Multiple sequence alignment - TraesCS1A01G306300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G306300 chr1A 100.000 5327 0 0 1 5327 498532249 498537575 0.000000e+00 9838.0
1 TraesCS1A01G306300 chr1D 95.545 3412 112 13 204 3595 403273099 403276490 0.000000e+00 5422.0
2 TraesCS1A01G306300 chr1D 90.157 701 27 15 4647 5327 403281112 403281790 0.000000e+00 874.0
3 TraesCS1A01G306300 chr1D 97.082 377 7 2 4192 4568 403276984 403277356 2.710000e-177 632.0
4 TraesCS1A01G306300 chr1D 97.585 207 5 0 3621 3827 403276485 403276691 6.560000e-94 355.0
5 TraesCS1A01G306300 chr1D 90.037 271 13 5 3827 4097 403276721 403276977 6.610000e-89 339.0
6 TraesCS1A01G306300 chr1D 94.505 91 3 1 4565 4653 403281001 403281091 7.190000e-29 139.0
7 TraesCS1A01G306300 chr1B 92.824 3665 156 38 210 3827 542134867 542138471 0.000000e+00 5212.0
8 TraesCS1A01G306300 chr1B 92.672 464 23 2 4864 5327 542139457 542139909 0.000000e+00 658.0
9 TraesCS1A01G306300 chr1B 90.110 273 13 9 3825 4097 542138499 542138757 5.110000e-90 342.0
10 TraesCS1A01G306300 chr1B 96.599 147 5 0 4192 4338 542138768 542138914 1.480000e-60 244.0
11 TraesCS1A01G306300 chr1B 82.353 170 9 8 4395 4560 542138912 542139064 1.560000e-25 128.0
12 TraesCS1A01G306300 chr1B 90.805 87 6 1 4565 4649 542139150 542139236 1.210000e-21 115.0
13 TraesCS1A01G306300 chr1B 96.970 33 1 0 4411 4443 542138982 542139014 7.450000e-04 56.5
14 TraesCS1A01G306300 chr6B 87.938 257 27 4 1984 2238 715838675 715838421 3.120000e-77 300.0
15 TraesCS1A01G306300 chr6B 87.023 262 24 8 1986 2241 217169263 217169006 2.430000e-73 287.0
16 TraesCS1A01G306300 chr6D 87.549 257 30 2 1986 2241 123159235 123158980 4.030000e-76 296.0
17 TraesCS1A01G306300 chr5A 88.095 252 23 7 1990 2238 130535256 130535503 5.220000e-75 292.0
18 TraesCS1A01G306300 chr7D 87.451 255 24 6 1987 2238 186402879 186403128 2.430000e-73 287.0
19 TraesCS1A01G306300 chr7D 87.600 250 28 3 1993 2241 204871003 204870756 2.430000e-73 287.0
20 TraesCS1A01G306300 chr7B 87.451 255 23 6 1987 2238 329084839 329085087 8.730000e-73 285.0
21 TraesCS1A01G306300 chr4A 95.122 41 2 0 3211 3251 485387797 485387757 1.240000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G306300 chr1A 498532249 498537575 5326 False 9838.000000 9838 100.000000 1 5327 1 chr1A.!!$F1 5326
1 TraesCS1A01G306300 chr1D 403273099 403281790 8691 False 1293.500000 5422 94.151833 204 5327 6 chr1D.!!$F1 5123
2 TraesCS1A01G306300 chr1B 542134867 542139909 5042 False 965.071429 5212 91.761857 210 5327 7 chr1B.!!$F1 5117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.165944 GTTTTCCGCATCCGTGTCTG 59.834 55.000 0.00 0.00 0.00 3.51 F
149 150 0.247736 GTCTGCGGACTGATCACCTT 59.752 55.000 18.76 0.00 39.24 3.50 F
164 165 0.391661 ACCTTCTACTCGCGGACGTA 60.392 55.000 6.13 4.97 41.18 3.57 F
197 198 0.394938 TTACAAGTTGCCGCTGGAGA 59.605 50.000 1.81 0.00 0.00 3.71 F
206 207 0.599728 GCCGCTGGAGATGCTCTTAG 60.600 60.000 0.00 0.00 0.00 2.18 F
208 209 0.599728 CGCTGGAGATGCTCTTAGCC 60.600 60.000 14.04 0.00 41.51 3.93 F
1344 1351 0.741221 ATTCGCCGAAGAGAAGTGGC 60.741 55.000 5.52 0.00 44.09 5.01 F
1689 1696 1.349627 GTCACCAATGCTCGATGCG 59.650 57.895 0.00 0.00 46.63 4.73 F
3596 3646 1.276622 TTGCTTCCCTGTAGTCCTCC 58.723 55.000 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1288 0.671781 CCACCGTCTTCTTGCTCAGG 60.672 60.000 0.00 0.0 0.00 3.86 R
1570 1577 1.033746 ATGAAAGGACCTGCCATGCG 61.034 55.000 0.00 0.0 40.02 4.73 R
1803 1810 1.153667 CTGCTTCCTCGCTCTGGAC 60.154 63.158 0.00 0.0 32.65 4.02 R
1872 1879 7.086376 GCTGCAATCATAACATTATAACAGGG 58.914 38.462 0.00 0.0 0.00 4.45 R
2238 2260 2.298610 CTACTCCAGTGGCATAGTCGA 58.701 52.381 3.51 0.0 0.00 4.20 R
2322 2344 1.176527 GCCTGCCAAGTAGAATGCAA 58.823 50.000 0.00 0.0 32.58 4.08 R
2789 2816 0.036577 ACTGCATCTGTCTGTCAGCC 60.037 55.000 0.00 0.0 43.32 4.85 R
3784 3849 1.160329 GGTGCTCTGTTGCTTCACGT 61.160 55.000 0.00 0.0 0.00 4.49 R
4782 8576 0.110238 CACACCGCACCATTTCTTCG 60.110 55.000 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.670695 AACTGAGGGCACAAAAATAGAAAT 57.329 33.333 0.00 0.00 0.00 2.17
25 26 6.272822 ACTGAGGGCACAAAAATAGAAATC 57.727 37.500 0.00 0.00 0.00 2.17
26 27 5.185828 ACTGAGGGCACAAAAATAGAAATCC 59.814 40.000 0.00 0.00 0.00 3.01
27 28 4.466015 TGAGGGCACAAAAATAGAAATCCC 59.534 41.667 0.00 0.00 0.00 3.85
28 29 3.774766 AGGGCACAAAAATAGAAATCCCC 59.225 43.478 0.00 0.00 31.75 4.81
29 30 3.517500 GGGCACAAAAATAGAAATCCCCA 59.482 43.478 0.00 0.00 0.00 4.96
30 31 4.164030 GGGCACAAAAATAGAAATCCCCAT 59.836 41.667 0.00 0.00 0.00 4.00
31 32 5.365314 GGGCACAAAAATAGAAATCCCCATA 59.635 40.000 0.00 0.00 0.00 2.74
32 33 6.043127 GGGCACAAAAATAGAAATCCCCATAT 59.957 38.462 0.00 0.00 0.00 1.78
33 34 7.420097 GGGCACAAAAATAGAAATCCCCATATT 60.420 37.037 0.00 0.00 0.00 1.28
34 35 7.992608 GGCACAAAAATAGAAATCCCCATATTT 59.007 33.333 0.00 0.00 30.98 1.40
63 64 8.504812 TGAAATCTAATCACGAATTTCATCCA 57.495 30.769 5.51 0.00 34.39 3.41
64 65 8.955388 TGAAATCTAATCACGAATTTCATCCAA 58.045 29.630 5.51 0.00 34.39 3.53
65 66 9.956720 GAAATCTAATCACGAATTTCATCCAAT 57.043 29.630 0.00 0.00 0.00 3.16
68 69 9.740239 ATCTAATCACGAATTTCATCCAATTTG 57.260 29.630 0.00 0.00 34.71 2.32
69 70 8.739039 TCTAATCACGAATTTCATCCAATTTGT 58.261 29.630 0.00 0.00 40.16 2.83
70 71 9.357652 CTAATCACGAATTTCATCCAATTTGTT 57.642 29.630 0.00 0.00 38.29 2.83
71 72 7.585286 ATCACGAATTTCATCCAATTTGTTG 57.415 32.000 0.00 0.00 38.29 3.33
72 73 6.743110 TCACGAATTTCATCCAATTTGTTGA 58.257 32.000 0.00 0.00 38.29 3.18
73 74 7.205992 TCACGAATTTCATCCAATTTGTTGAA 58.794 30.769 7.53 7.53 38.29 2.69
74 75 7.708322 TCACGAATTTCATCCAATTTGTTGAAA 59.292 29.630 18.94 18.94 38.29 2.69
75 76 8.333908 CACGAATTTCATCCAATTTGTTGAAAA 58.666 29.630 19.84 7.39 38.29 2.29
76 77 8.887717 ACGAATTTCATCCAATTTGTTGAAAAA 58.112 25.926 19.84 7.18 40.36 1.94
99 100 8.825667 AAAAAGTTTGAAATGTATGCGGTTAT 57.174 26.923 0.00 0.00 0.00 1.89
100 101 8.825667 AAAAGTTTGAAATGTATGCGGTTATT 57.174 26.923 0.00 0.00 0.00 1.40
101 102 9.915629 AAAAGTTTGAAATGTATGCGGTTATTA 57.084 25.926 0.00 0.00 0.00 0.98
103 104 9.515020 AAGTTTGAAATGTATGCGGTTATTATG 57.485 29.630 0.00 0.00 0.00 1.90
104 105 8.134895 AGTTTGAAATGTATGCGGTTATTATGG 58.865 33.333 0.00 0.00 0.00 2.74
105 106 7.575414 TTGAAATGTATGCGGTTATTATGGT 57.425 32.000 0.00 0.00 0.00 3.55
106 107 7.575414 TGAAATGTATGCGGTTATTATGGTT 57.425 32.000 0.00 0.00 0.00 3.67
107 108 7.421599 TGAAATGTATGCGGTTATTATGGTTG 58.578 34.615 0.00 0.00 0.00 3.77
108 109 7.283354 TGAAATGTATGCGGTTATTATGGTTGA 59.717 33.333 0.00 0.00 0.00 3.18
109 110 7.575414 AATGTATGCGGTTATTATGGTTGAA 57.425 32.000 0.00 0.00 0.00 2.69
110 111 7.759489 ATGTATGCGGTTATTATGGTTGAAT 57.241 32.000 0.00 0.00 0.00 2.57
111 112 6.964908 TGTATGCGGTTATTATGGTTGAATG 58.035 36.000 0.00 0.00 0.00 2.67
112 113 6.768381 TGTATGCGGTTATTATGGTTGAATGA 59.232 34.615 0.00 0.00 0.00 2.57
113 114 5.493133 TGCGGTTATTATGGTTGAATGAC 57.507 39.130 0.00 0.00 0.00 3.06
114 115 4.034626 TGCGGTTATTATGGTTGAATGACG 59.965 41.667 0.00 0.00 0.00 4.35
115 116 4.553938 GCGGTTATTATGGTTGAATGACGG 60.554 45.833 0.00 0.00 0.00 4.79
116 117 4.573201 CGGTTATTATGGTTGAATGACGGT 59.427 41.667 0.00 0.00 0.00 4.83
117 118 5.065474 CGGTTATTATGGTTGAATGACGGTT 59.935 40.000 0.00 0.00 0.00 4.44
118 119 6.403855 CGGTTATTATGGTTGAATGACGGTTT 60.404 38.462 0.00 0.00 0.00 3.27
119 120 7.317390 GGTTATTATGGTTGAATGACGGTTTT 58.683 34.615 0.00 0.00 0.00 2.43
120 121 7.486870 GGTTATTATGGTTGAATGACGGTTTTC 59.513 37.037 0.00 0.00 0.00 2.29
121 122 3.934457 ATGGTTGAATGACGGTTTTCC 57.066 42.857 0.00 0.00 0.00 3.13
131 132 3.663202 GGTTTTCCGCATCCGTGT 58.337 55.556 0.00 0.00 0.00 4.49
132 133 1.500396 GGTTTTCCGCATCCGTGTC 59.500 57.895 0.00 0.00 0.00 3.67
133 134 0.953960 GGTTTTCCGCATCCGTGTCT 60.954 55.000 0.00 0.00 0.00 3.41
134 135 0.165944 GTTTTCCGCATCCGTGTCTG 59.834 55.000 0.00 0.00 0.00 3.51
135 136 1.573829 TTTTCCGCATCCGTGTCTGC 61.574 55.000 0.00 0.00 35.02 4.26
144 145 4.079090 CGTGTCTGCGGACTGATC 57.921 61.111 25.54 12.49 42.54 2.92
145 146 1.212751 CGTGTCTGCGGACTGATCA 59.787 57.895 25.54 2.80 42.54 2.92
146 147 1.073216 CGTGTCTGCGGACTGATCAC 61.073 60.000 25.54 14.17 42.54 3.06
147 148 0.737715 GTGTCTGCGGACTGATCACC 60.738 60.000 25.54 0.00 42.54 4.02
148 149 0.900182 TGTCTGCGGACTGATCACCT 60.900 55.000 25.54 0.00 42.54 4.00
149 150 0.247736 GTCTGCGGACTGATCACCTT 59.752 55.000 18.76 0.00 39.24 3.50
150 151 0.532573 TCTGCGGACTGATCACCTTC 59.467 55.000 0.00 0.00 0.00 3.46
151 152 0.534412 CTGCGGACTGATCACCTTCT 59.466 55.000 0.00 0.00 0.00 2.85
152 153 1.751351 CTGCGGACTGATCACCTTCTA 59.249 52.381 0.00 0.00 0.00 2.10
153 154 1.476891 TGCGGACTGATCACCTTCTAC 59.523 52.381 0.00 0.00 0.00 2.59
154 155 1.751924 GCGGACTGATCACCTTCTACT 59.248 52.381 0.00 0.00 0.00 2.57
155 156 2.223618 GCGGACTGATCACCTTCTACTC 60.224 54.545 0.00 0.00 0.00 2.59
156 157 2.032302 CGGACTGATCACCTTCTACTCG 59.968 54.545 0.00 0.00 0.00 4.18
157 158 2.223618 GGACTGATCACCTTCTACTCGC 60.224 54.545 0.00 0.00 0.00 5.03
158 159 1.402259 ACTGATCACCTTCTACTCGCG 59.598 52.381 0.00 0.00 0.00 5.87
159 160 0.738975 TGATCACCTTCTACTCGCGG 59.261 55.000 6.13 0.00 0.00 6.46
160 161 1.022735 GATCACCTTCTACTCGCGGA 58.977 55.000 6.13 0.00 0.00 5.54
161 162 0.739561 ATCACCTTCTACTCGCGGAC 59.260 55.000 6.13 0.00 0.00 4.79
162 163 1.226323 CACCTTCTACTCGCGGACG 60.226 63.158 6.13 0.00 42.01 4.79
163 164 1.673665 ACCTTCTACTCGCGGACGT 60.674 57.895 6.13 3.89 41.18 4.34
164 165 0.391661 ACCTTCTACTCGCGGACGTA 60.392 55.000 6.13 4.97 41.18 3.57
165 166 0.729116 CCTTCTACTCGCGGACGTAA 59.271 55.000 6.13 0.00 41.18 3.18
166 167 1.267932 CCTTCTACTCGCGGACGTAAG 60.268 57.143 6.13 5.38 41.18 2.34
185 186 7.198306 CGTAAGTGGAAGGAAAATTACAAGT 57.802 36.000 0.00 0.00 0.00 3.16
186 187 7.645402 CGTAAGTGGAAGGAAAATTACAAGTT 58.355 34.615 0.00 0.00 0.00 2.66
187 188 7.589954 CGTAAGTGGAAGGAAAATTACAAGTTG 59.410 37.037 0.00 0.00 0.00 3.16
188 189 5.842907 AGTGGAAGGAAAATTACAAGTTGC 58.157 37.500 1.81 0.00 0.00 4.17
189 190 4.988540 GTGGAAGGAAAATTACAAGTTGCC 59.011 41.667 1.81 0.00 31.74 4.52
190 191 4.234574 GGAAGGAAAATTACAAGTTGCCG 58.765 43.478 1.81 0.00 36.79 5.69
191 192 3.297830 AGGAAAATTACAAGTTGCCGC 57.702 42.857 1.81 0.00 36.79 6.53
192 193 2.890945 AGGAAAATTACAAGTTGCCGCT 59.109 40.909 1.81 0.00 36.79 5.52
193 194 2.986479 GGAAAATTACAAGTTGCCGCTG 59.014 45.455 1.81 0.00 0.00 5.18
194 195 2.723124 AAATTACAAGTTGCCGCTGG 57.277 45.000 1.81 0.00 0.00 4.85
195 196 1.904287 AATTACAAGTTGCCGCTGGA 58.096 45.000 1.81 0.00 0.00 3.86
196 197 1.453155 ATTACAAGTTGCCGCTGGAG 58.547 50.000 1.81 0.00 0.00 3.86
197 198 0.394938 TTACAAGTTGCCGCTGGAGA 59.605 50.000 1.81 0.00 0.00 3.71
198 199 0.613260 TACAAGTTGCCGCTGGAGAT 59.387 50.000 1.81 0.00 0.00 2.75
199 200 0.957395 ACAAGTTGCCGCTGGAGATG 60.957 55.000 1.81 0.00 0.00 2.90
200 201 2.042831 AAGTTGCCGCTGGAGATGC 61.043 57.895 0.00 0.00 0.00 3.91
201 202 2.437359 GTTGCCGCTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
202 203 2.124983 TTGCCGCTGGAGATGCTC 60.125 61.111 0.00 0.00 0.00 4.26
203 204 2.663075 TTGCCGCTGGAGATGCTCT 61.663 57.895 0.00 0.00 0.00 4.09
204 205 2.188994 GCCGCTGGAGATGCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
205 206 1.329913 TGCCGCTGGAGATGCTCTTA 61.330 55.000 0.00 0.00 0.00 2.10
206 207 0.599728 GCCGCTGGAGATGCTCTTAG 60.600 60.000 0.00 0.00 0.00 2.18
207 208 0.599728 CCGCTGGAGATGCTCTTAGC 60.600 60.000 11.46 11.46 42.82 3.09
208 209 0.599728 CGCTGGAGATGCTCTTAGCC 60.600 60.000 14.04 0.00 41.51 3.93
249 250 3.005684 AGCTCCATTTGCATCGACAAAAA 59.994 39.130 5.42 0.00 42.45 1.94
300 301 1.032014 TGTTGGAAGCTCAAACTGGC 58.968 50.000 0.00 0.00 0.00 4.85
376 377 2.677228 CAGGCCCATTTCCGTCCT 59.323 61.111 0.00 0.00 0.00 3.85
377 378 1.452108 CAGGCCCATTTCCGTCCTC 60.452 63.158 0.00 0.00 0.00 3.71
378 379 1.616628 AGGCCCATTTCCGTCCTCT 60.617 57.895 0.00 0.00 0.00 3.69
708 715 1.608283 GGAAGACAAGTCGAGGTTGGG 60.608 57.143 11.21 0.00 34.09 4.12
726 733 1.790896 GTTAACGTTCCTTGCGCGC 60.791 57.895 27.26 27.26 0.00 6.86
759 766 1.202879 TGCTCGTGTTTTCCTTCCCAT 60.203 47.619 0.00 0.00 0.00 4.00
761 768 1.200020 CTCGTGTTTTCCTTCCCATGC 59.800 52.381 0.00 0.00 0.00 4.06
826 833 2.950781 TGCTACTGTCTCATAGGAGGG 58.049 52.381 4.28 0.00 41.69 4.30
876 883 2.885861 GTCTCGTGGATCTGCGGT 59.114 61.111 8.96 0.00 0.00 5.68
978 985 1.079750 GGCGACCAGTCCAAGAGAC 60.080 63.158 0.00 0.00 46.71 3.36
1191 1198 2.919971 GCTCAAGAGCGTGTTTCCT 58.080 52.632 6.28 0.00 45.29 3.36
1281 1288 1.524621 CATCACCATGCCTCCGGAC 60.525 63.158 0.00 0.00 0.00 4.79
1344 1351 0.741221 ATTCGCCGAAGAGAAGTGGC 60.741 55.000 5.52 0.00 44.09 5.01
1570 1577 3.731728 TGGAGCCCCAGCATCCAC 61.732 66.667 0.00 0.00 43.56 4.02
1689 1696 1.349627 GTCACCAATGCTCGATGCG 59.650 57.895 0.00 0.00 46.63 4.73
1803 1810 2.110967 CAGGGAATCAGCTGCACGG 61.111 63.158 9.47 0.00 0.00 4.94
1856 1863 5.825593 TGTCCTGTCTATTCCTGTTTTCT 57.174 39.130 0.00 0.00 0.00 2.52
1866 1873 5.705609 ATTCCTGTTTTCTTACGCATTGT 57.294 34.783 0.00 0.00 0.00 2.71
2267 2289 2.224161 GCCACTGGAGTAGCCTATTGAG 60.224 54.545 0.00 0.00 37.63 3.02
2294 2316 7.904558 ATTCTCATTCCATGTCACTCTACTA 57.095 36.000 0.00 0.00 0.00 1.82
2345 2367 3.217626 GCATTCTACTTGGCAGGCTTAT 58.782 45.455 0.00 0.00 0.00 1.73
2515 2542 4.917385 ACTATGCATTGTAGTGAACCCAA 58.083 39.130 12.24 0.00 31.47 4.12
2589 2616 5.986004 AGTCGATCGTTCAACTTCTTTTT 57.014 34.783 15.94 0.00 0.00 1.94
3118 3155 6.863645 CCTACTGAATGTATTGACCGATGTAG 59.136 42.308 0.00 0.00 0.00 2.74
3135 3172 4.041740 TGTAGTTAGGCTAAGCATGTCG 57.958 45.455 7.33 0.00 0.00 4.35
3147 3184 3.581024 AGCATGTCGATGTTTTGCATT 57.419 38.095 0.00 0.00 38.06 3.56
3153 3190 4.041049 TGTCGATGTTTTGCATTGTGAAC 58.959 39.130 0.00 0.00 39.47 3.18
3543 3593 8.995220 ACTTTTGTTTGAATCAATGAATCATGG 58.005 29.630 1.43 0.00 0.00 3.66
3593 3643 3.636153 AGAATTGCTTCCCTGTAGTCC 57.364 47.619 0.00 0.00 31.27 3.85
3594 3644 3.185455 AGAATTGCTTCCCTGTAGTCCT 58.815 45.455 0.00 0.00 31.27 3.85
3595 3645 3.198853 AGAATTGCTTCCCTGTAGTCCTC 59.801 47.826 0.00 0.00 31.27 3.71
3596 3646 1.276622 TTGCTTCCCTGTAGTCCTCC 58.723 55.000 0.00 0.00 0.00 4.30
3735 3800 6.183360 GGAACCACACTTAACAAACAGATCAA 60.183 38.462 0.00 0.00 0.00 2.57
3970 4065 5.756195 TGCCAAACACAATCATATCTAGC 57.244 39.130 0.00 0.00 0.00 3.42
3971 4066 5.192176 TGCCAAACACAATCATATCTAGCA 58.808 37.500 0.00 0.00 0.00 3.49
3972 4067 5.651576 TGCCAAACACAATCATATCTAGCAA 59.348 36.000 0.00 0.00 0.00 3.91
3973 4068 6.321945 TGCCAAACACAATCATATCTAGCAAT 59.678 34.615 0.00 0.00 0.00 3.56
3974 4069 7.501892 TGCCAAACACAATCATATCTAGCAATA 59.498 33.333 0.00 0.00 0.00 1.90
3975 4070 8.517878 GCCAAACACAATCATATCTAGCAATAT 58.482 33.333 0.00 0.00 0.00 1.28
3980 4075 9.814899 ACACAATCATATCTAGCAATATCTAGC 57.185 33.333 0.00 0.00 36.77 3.42
3981 4076 9.813446 CACAATCATATCTAGCAATATCTAGCA 57.187 33.333 0.00 0.00 36.77 3.49
4010 4105 5.483811 TCATTGGTCATTACTTTGTCGCTA 58.516 37.500 0.00 0.00 0.00 4.26
4097 4196 4.216257 TCACACTTCTTTTGGATGCTAAGC 59.784 41.667 0.00 0.00 0.00 3.09
4099 4198 4.022849 ACACTTCTTTTGGATGCTAAGCAC 60.023 41.667 0.00 0.00 43.04 4.40
4100 4199 4.217118 CACTTCTTTTGGATGCTAAGCACT 59.783 41.667 0.00 0.00 43.04 4.40
4101 4200 4.457257 ACTTCTTTTGGATGCTAAGCACTC 59.543 41.667 0.00 0.00 43.04 3.51
4102 4201 3.347216 TCTTTTGGATGCTAAGCACTCC 58.653 45.455 0.00 0.00 43.04 3.85
4103 4202 2.128771 TTTGGATGCTAAGCACTCCC 57.871 50.000 0.00 0.00 43.04 4.30
4104 4203 1.289160 TTGGATGCTAAGCACTCCCT 58.711 50.000 0.00 0.00 43.04 4.20
4105 4204 0.833287 TGGATGCTAAGCACTCCCTC 59.167 55.000 0.00 0.00 43.04 4.30
4106 4205 1.127343 GGATGCTAAGCACTCCCTCT 58.873 55.000 0.00 0.00 43.04 3.69
4107 4206 1.069978 GGATGCTAAGCACTCCCTCTC 59.930 57.143 0.00 0.00 43.04 3.20
4108 4207 2.038659 GATGCTAAGCACTCCCTCTCT 58.961 52.381 0.00 0.00 43.04 3.10
4109 4208 2.828661 TGCTAAGCACTCCCTCTCTA 57.171 50.000 0.00 0.00 31.71 2.43
4110 4209 3.101643 TGCTAAGCACTCCCTCTCTAA 57.898 47.619 0.00 0.00 31.71 2.10
4111 4210 3.441101 TGCTAAGCACTCCCTCTCTAAA 58.559 45.455 0.00 0.00 31.71 1.85
4112 4211 3.195825 TGCTAAGCACTCCCTCTCTAAAC 59.804 47.826 0.00 0.00 31.71 2.01
4113 4212 3.195825 GCTAAGCACTCCCTCTCTAAACA 59.804 47.826 0.00 0.00 0.00 2.83
4114 4213 4.322801 GCTAAGCACTCCCTCTCTAAACAA 60.323 45.833 0.00 0.00 0.00 2.83
4115 4214 4.917906 AAGCACTCCCTCTCTAAACAAT 57.082 40.909 0.00 0.00 0.00 2.71
4116 4215 6.407074 GCTAAGCACTCCCTCTCTAAACAATA 60.407 42.308 0.00 0.00 0.00 1.90
4117 4216 6.567602 AAGCACTCCCTCTCTAAACAATAT 57.432 37.500 0.00 0.00 0.00 1.28
4118 4217 6.168270 AGCACTCCCTCTCTAAACAATATC 57.832 41.667 0.00 0.00 0.00 1.63
4119 4218 5.071115 AGCACTCCCTCTCTAAACAATATCC 59.929 44.000 0.00 0.00 0.00 2.59
4120 4219 5.743422 GCACTCCCTCTCTAAACAATATCCC 60.743 48.000 0.00 0.00 0.00 3.85
4121 4220 4.908481 ACTCCCTCTCTAAACAATATCCCC 59.092 45.833 0.00 0.00 0.00 4.81
4122 4221 4.903149 TCCCTCTCTAAACAATATCCCCA 58.097 43.478 0.00 0.00 0.00 4.96
4123 4222 4.658901 TCCCTCTCTAAACAATATCCCCAC 59.341 45.833 0.00 0.00 0.00 4.61
4124 4223 4.412199 CCCTCTCTAAACAATATCCCCACA 59.588 45.833 0.00 0.00 0.00 4.17
4125 4224 5.368989 CCTCTCTAAACAATATCCCCACAC 58.631 45.833 0.00 0.00 0.00 3.82
4126 4225 5.131142 CCTCTCTAAACAATATCCCCACACT 59.869 44.000 0.00 0.00 0.00 3.55
4127 4226 6.353082 CCTCTCTAAACAATATCCCCACACTT 60.353 42.308 0.00 0.00 0.00 3.16
4128 4227 6.650120 TCTCTAAACAATATCCCCACACTTC 58.350 40.000 0.00 0.00 0.00 3.01
4129 4228 6.443849 TCTCTAAACAATATCCCCACACTTCT 59.556 38.462 0.00 0.00 0.00 2.85
4130 4229 7.027874 TCTAAACAATATCCCCACACTTCTT 57.972 36.000 0.00 0.00 0.00 2.52
4131 4230 7.466804 TCTAAACAATATCCCCACACTTCTTT 58.533 34.615 0.00 0.00 0.00 2.52
4132 4231 6.994421 AAACAATATCCCCACACTTCTTTT 57.006 33.333 0.00 0.00 0.00 2.27
4133 4232 5.982890 ACAATATCCCCACACTTCTTTTG 57.017 39.130 0.00 0.00 0.00 2.44
4134 4233 4.772100 ACAATATCCCCACACTTCTTTTGG 59.228 41.667 0.00 0.00 0.00 3.28
4135 4234 4.946160 ATATCCCCACACTTCTTTTGGA 57.054 40.909 0.00 0.00 31.39 3.53
4136 4235 3.833559 ATCCCCACACTTCTTTTGGAT 57.166 42.857 0.00 0.00 31.39 3.41
4137 4236 2.875296 TCCCCACACTTCTTTTGGATG 58.125 47.619 0.00 0.00 31.39 3.51
4138 4237 1.273327 CCCCACACTTCTTTTGGATGC 59.727 52.381 0.00 0.00 31.39 3.91
4139 4238 1.273327 CCCACACTTCTTTTGGATGCC 59.727 52.381 0.00 0.00 31.39 4.40
4140 4239 1.962807 CCACACTTCTTTTGGATGCCA 59.037 47.619 0.00 0.00 31.39 4.92
4141 4240 2.364970 CCACACTTCTTTTGGATGCCAA 59.635 45.455 0.00 0.00 42.29 4.52
4142 4241 3.553508 CCACACTTCTTTTGGATGCCAAG 60.554 47.826 0.00 0.00 44.84 3.61
4143 4242 3.068590 CACACTTCTTTTGGATGCCAAGT 59.931 43.478 0.00 0.00 44.84 3.16
4144 4243 4.278170 CACACTTCTTTTGGATGCCAAGTA 59.722 41.667 0.00 0.00 44.84 2.24
4145 4244 4.520492 ACACTTCTTTTGGATGCCAAGTAG 59.480 41.667 0.00 0.00 44.84 2.57
4146 4245 3.507622 ACTTCTTTTGGATGCCAAGTAGC 59.492 43.478 0.00 0.00 44.84 3.58
4147 4246 3.439857 TCTTTTGGATGCCAAGTAGCT 57.560 42.857 0.00 0.00 44.84 3.32
4148 4247 3.766545 TCTTTTGGATGCCAAGTAGCTT 58.233 40.909 0.00 0.00 44.84 3.74
4149 4248 4.917385 TCTTTTGGATGCCAAGTAGCTTA 58.083 39.130 0.00 0.00 44.84 3.09
4150 4249 5.509498 TCTTTTGGATGCCAAGTAGCTTAT 58.491 37.500 0.00 0.00 44.84 1.73
4151 4250 6.658849 TCTTTTGGATGCCAAGTAGCTTATA 58.341 36.000 0.00 0.00 44.84 0.98
4152 4251 7.290061 TCTTTTGGATGCCAAGTAGCTTATAT 58.710 34.615 0.00 0.00 44.84 0.86
4153 4252 7.779798 TCTTTTGGATGCCAAGTAGCTTATATT 59.220 33.333 0.00 0.00 44.84 1.28
4154 4253 8.988546 TTTTGGATGCCAAGTAGCTTATATTA 57.011 30.769 0.00 0.00 44.84 0.98
4155 4254 9.586732 TTTTGGATGCCAAGTAGCTTATATTAT 57.413 29.630 0.00 0.00 44.84 1.28
4156 4255 8.565896 TTGGATGCCAAGTAGCTTATATTATG 57.434 34.615 0.00 0.00 38.75 1.90
4157 4256 7.689299 TGGATGCCAAGTAGCTTATATTATGT 58.311 34.615 0.00 0.00 0.00 2.29
4158 4257 8.163408 TGGATGCCAAGTAGCTTATATTATGTT 58.837 33.333 0.00 0.00 0.00 2.71
4159 4258 9.667107 GGATGCCAAGTAGCTTATATTATGTTA 57.333 33.333 0.00 0.00 0.00 2.41
4186 4285 1.808411 GTCATTTCTGACGCCTTCCA 58.192 50.000 0.00 0.00 42.24 3.53
4187 4286 2.359900 GTCATTTCTGACGCCTTCCAT 58.640 47.619 0.00 0.00 42.24 3.41
4188 4287 2.749621 GTCATTTCTGACGCCTTCCATT 59.250 45.455 0.00 0.00 42.24 3.16
4189 4288 3.191371 GTCATTTCTGACGCCTTCCATTT 59.809 43.478 0.00 0.00 42.24 2.32
4190 4289 3.440173 TCATTTCTGACGCCTTCCATTTC 59.560 43.478 0.00 0.00 0.00 2.17
4366 4465 5.538118 TGTAGAATTACACCGCTCATATGG 58.462 41.667 2.13 0.00 34.91 2.74
4369 4468 6.169557 AGAATTACACCGCTCATATGGTTA 57.830 37.500 2.13 0.00 35.96 2.85
4370 4469 6.588204 AGAATTACACCGCTCATATGGTTAA 58.412 36.000 2.13 0.00 35.96 2.01
4446 4545 3.057734 CGGTGGTTCAGAGTTTGTAGAC 58.942 50.000 0.00 0.00 0.00 2.59
4461 4560 1.874872 GTAGACGAGTAGCAGCCCTAG 59.125 57.143 0.00 0.00 0.00 3.02
4462 4561 0.466555 AGACGAGTAGCAGCCCTAGG 60.467 60.000 0.06 0.06 0.00 3.02
4695 8484 7.283127 TGAGAATTTGACAGCCAATTCCTATAC 59.717 37.037 7.25 0.00 34.23 1.47
4712 8501 4.677378 CCTATACGAGTCTTGAAATCAGCG 59.323 45.833 0.00 0.00 0.00 5.18
4735 8524 5.558083 CGTGAAGTTTGATCGTCATTGTTGA 60.558 40.000 0.00 0.00 0.00 3.18
4759 8553 0.606130 TCAATGGCGCAGTGTGTGAT 60.606 50.000 10.83 0.00 31.07 3.06
4842 8649 5.726138 GCATCATTAGAACTGCGAAGAACTG 60.726 44.000 0.00 0.00 0.00 3.16
4854 8703 1.799258 AAGAACTGCAAAGGCGCTGG 61.799 55.000 7.64 0.00 45.35 4.85
4855 8704 3.903932 GAACTGCAAAGGCGCTGGC 62.904 63.158 7.64 6.77 45.35 4.85
4856 8705 4.962836 ACTGCAAAGGCGCTGGCT 62.963 61.111 7.64 0.00 45.35 4.75
4857 8706 4.415332 CTGCAAAGGCGCTGGCTG 62.415 66.667 7.64 6.50 45.35 4.85
4858 8707 4.953010 TGCAAAGGCGCTGGCTGA 62.953 61.111 7.64 0.00 45.35 4.26
4859 8708 3.446570 GCAAAGGCGCTGGCTGAT 61.447 61.111 7.64 0.00 38.81 2.90
4860 8709 2.796651 CAAAGGCGCTGGCTGATC 59.203 61.111 7.64 0.00 38.81 2.92
4861 8710 2.042259 CAAAGGCGCTGGCTGATCA 61.042 57.895 7.64 0.00 38.81 2.92
4889 8772 1.421382 ACATGCATGAAAACGCTTGC 58.579 45.000 32.75 0.00 36.92 4.01
4904 8787 1.067199 CTTGCGCGCAATTCTGGTTC 61.067 55.000 42.70 5.95 35.20 3.62
4920 8803 3.941483 CTGGTTCGCTCCTTCAATAATGT 59.059 43.478 0.00 0.00 0.00 2.71
5017 8900 4.905429 TGAAGAAGTCGAATGATCCCAAA 58.095 39.130 0.00 0.00 0.00 3.28
5091 8975 9.962783 GATACACCTACAATACTTTCTAACGAT 57.037 33.333 0.00 0.00 0.00 3.73
5117 9001 6.599244 ACAGTCAAACATATTGGACCACTATG 59.401 38.462 23.54 23.54 39.34 2.23
5269 9153 2.669391 GCTGTATGTCCTTTTGCACTGC 60.669 50.000 0.00 0.00 0.00 4.40
5313 9197 3.189287 GTCAGGTTAACAGGAACATGCTG 59.811 47.826 8.10 2.46 40.14 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.295292 GGATTTCTATTTTTGTGCCCTCAGTT 60.295 38.462 0.00 0.00 0.00 3.16
3 4 5.394553 GGGATTTCTATTTTTGTGCCCTCAG 60.395 44.000 0.00 0.00 0.00 3.35
4 5 4.466015 GGGATTTCTATTTTTGTGCCCTCA 59.534 41.667 0.00 0.00 0.00 3.86
5 6 4.141937 GGGGATTTCTATTTTTGTGCCCTC 60.142 45.833 0.00 0.00 34.73 4.30
6 7 3.774766 GGGGATTTCTATTTTTGTGCCCT 59.225 43.478 0.00 0.00 34.73 5.19
7 8 3.517500 TGGGGATTTCTATTTTTGTGCCC 59.482 43.478 0.00 0.00 37.69 5.36
8 9 4.817318 TGGGGATTTCTATTTTTGTGCC 57.183 40.909 0.00 0.00 0.00 5.01
9 10 8.962884 AAATATGGGGATTTCTATTTTTGTGC 57.037 30.769 0.00 0.00 0.00 4.57
37 38 9.123902 TGGATGAAATTCGTGATTAGATTTCAT 57.876 29.630 17.93 17.93 45.60 2.57
38 39 8.504812 TGGATGAAATTCGTGATTAGATTTCA 57.495 30.769 11.36 11.36 40.69 2.69
39 40 9.956720 ATTGGATGAAATTCGTGATTAGATTTC 57.043 29.630 0.00 0.00 0.00 2.17
42 43 9.740239 CAAATTGGATGAAATTCGTGATTAGAT 57.260 29.630 0.00 0.00 0.00 1.98
43 44 8.739039 ACAAATTGGATGAAATTCGTGATTAGA 58.261 29.630 0.00 0.00 0.00 2.10
44 45 8.915871 ACAAATTGGATGAAATTCGTGATTAG 57.084 30.769 0.00 0.00 0.00 1.73
45 46 9.138062 CAACAAATTGGATGAAATTCGTGATTA 57.862 29.630 0.00 0.00 31.63 1.75
46 47 7.871973 TCAACAAATTGGATGAAATTCGTGATT 59.128 29.630 0.00 0.00 36.39 2.57
47 48 7.377398 TCAACAAATTGGATGAAATTCGTGAT 58.623 30.769 0.00 0.00 36.39 3.06
48 49 6.743110 TCAACAAATTGGATGAAATTCGTGA 58.257 32.000 0.00 0.00 36.39 4.35
49 50 7.405469 TTCAACAAATTGGATGAAATTCGTG 57.595 32.000 12.06 0.00 36.39 4.35
50 51 8.430801 TTTTCAACAAATTGGATGAAATTCGT 57.569 26.923 21.28 0.00 37.25 3.85
74 75 8.825667 ATAACCGCATACATTTCAAACTTTTT 57.174 26.923 0.00 0.00 0.00 1.94
75 76 8.825667 AATAACCGCATACATTTCAAACTTTT 57.174 26.923 0.00 0.00 0.00 2.27
77 78 9.515020 CATAATAACCGCATACATTTCAAACTT 57.485 29.630 0.00 0.00 0.00 2.66
78 79 8.134895 CCATAATAACCGCATACATTTCAAACT 58.865 33.333 0.00 0.00 0.00 2.66
79 80 7.918562 ACCATAATAACCGCATACATTTCAAAC 59.081 33.333 0.00 0.00 0.00 2.93
80 81 8.001881 ACCATAATAACCGCATACATTTCAAA 57.998 30.769 0.00 0.00 0.00 2.69
81 82 7.575414 ACCATAATAACCGCATACATTTCAA 57.425 32.000 0.00 0.00 0.00 2.69
82 83 7.283354 TCAACCATAATAACCGCATACATTTCA 59.717 33.333 0.00 0.00 0.00 2.69
83 84 7.644490 TCAACCATAATAACCGCATACATTTC 58.356 34.615 0.00 0.00 0.00 2.17
84 85 7.575414 TCAACCATAATAACCGCATACATTT 57.425 32.000 0.00 0.00 0.00 2.32
85 86 7.575414 TTCAACCATAATAACCGCATACATT 57.425 32.000 0.00 0.00 0.00 2.71
86 87 7.446931 TCATTCAACCATAATAACCGCATACAT 59.553 33.333 0.00 0.00 0.00 2.29
87 88 6.768381 TCATTCAACCATAATAACCGCATACA 59.232 34.615 0.00 0.00 0.00 2.29
88 89 7.075741 GTCATTCAACCATAATAACCGCATAC 58.924 38.462 0.00 0.00 0.00 2.39
89 90 6.073494 CGTCATTCAACCATAATAACCGCATA 60.073 38.462 0.00 0.00 0.00 3.14
90 91 5.277779 CGTCATTCAACCATAATAACCGCAT 60.278 40.000 0.00 0.00 0.00 4.73
91 92 4.034626 CGTCATTCAACCATAATAACCGCA 59.965 41.667 0.00 0.00 0.00 5.69
92 93 4.523813 CGTCATTCAACCATAATAACCGC 58.476 43.478 0.00 0.00 0.00 5.68
93 94 4.573201 ACCGTCATTCAACCATAATAACCG 59.427 41.667 0.00 0.00 0.00 4.44
94 95 6.445357 AACCGTCATTCAACCATAATAACC 57.555 37.500 0.00 0.00 0.00 2.85
95 96 7.486870 GGAAAACCGTCATTCAACCATAATAAC 59.513 37.037 0.00 0.00 0.00 1.89
96 97 7.540299 GGAAAACCGTCATTCAACCATAATAA 58.460 34.615 0.00 0.00 0.00 1.40
97 98 6.183360 CGGAAAACCGTCATTCAACCATAATA 60.183 38.462 0.00 0.00 0.00 0.98
98 99 5.392595 CGGAAAACCGTCATTCAACCATAAT 60.393 40.000 0.00 0.00 0.00 1.28
99 100 4.083217 CGGAAAACCGTCATTCAACCATAA 60.083 41.667 0.00 0.00 0.00 1.90
100 101 3.437395 CGGAAAACCGTCATTCAACCATA 59.563 43.478 0.00 0.00 0.00 2.74
101 102 2.227865 CGGAAAACCGTCATTCAACCAT 59.772 45.455 0.00 0.00 0.00 3.55
102 103 1.604755 CGGAAAACCGTCATTCAACCA 59.395 47.619 0.00 0.00 0.00 3.67
103 104 1.664874 GCGGAAAACCGTCATTCAACC 60.665 52.381 10.25 0.00 35.43 3.77
104 105 1.002251 TGCGGAAAACCGTCATTCAAC 60.002 47.619 10.25 0.00 35.43 3.18
105 106 1.309950 TGCGGAAAACCGTCATTCAA 58.690 45.000 10.25 0.00 35.43 2.69
106 107 1.466950 GATGCGGAAAACCGTCATTCA 59.533 47.619 10.25 0.17 33.10 2.57
107 108 1.202143 GGATGCGGAAAACCGTCATTC 60.202 52.381 10.25 8.90 33.10 2.67
108 109 0.808755 GGATGCGGAAAACCGTCATT 59.191 50.000 10.25 1.04 33.10 2.57
109 110 1.366111 CGGATGCGGAAAACCGTCAT 61.366 55.000 14.39 14.39 40.42 3.06
110 111 2.030401 CGGATGCGGAAAACCGTCA 61.030 57.895 10.25 8.87 40.42 4.35
111 112 2.782615 CGGATGCGGAAAACCGTC 59.217 61.111 10.25 1.26 40.42 4.79
114 115 0.953960 AGACACGGATGCGGAAAACC 60.954 55.000 12.44 0.00 0.00 3.27
115 116 0.165944 CAGACACGGATGCGGAAAAC 59.834 55.000 12.44 0.00 0.00 2.43
116 117 1.573829 GCAGACACGGATGCGGAAAA 61.574 55.000 12.44 0.00 31.87 2.29
117 118 2.032634 GCAGACACGGATGCGGAAA 61.033 57.895 12.44 0.00 31.87 3.13
118 119 2.434185 GCAGACACGGATGCGGAA 60.434 61.111 12.44 0.00 31.87 4.30
127 128 1.073216 GTGATCAGTCCGCAGACACG 61.073 60.000 2.32 0.00 46.15 4.49
128 129 0.737715 GGTGATCAGTCCGCAGACAC 60.738 60.000 2.32 0.00 46.15 3.67
129 130 0.900182 AGGTGATCAGTCCGCAGACA 60.900 55.000 2.32 0.00 46.15 3.41
130 131 0.247736 AAGGTGATCAGTCCGCAGAC 59.752 55.000 0.00 0.00 43.89 3.51
131 132 0.532573 GAAGGTGATCAGTCCGCAGA 59.467 55.000 0.00 0.00 0.00 4.26
132 133 0.534412 AGAAGGTGATCAGTCCGCAG 59.466 55.000 0.00 0.00 0.00 5.18
133 134 1.476891 GTAGAAGGTGATCAGTCCGCA 59.523 52.381 0.00 0.00 0.00 5.69
134 135 1.751924 AGTAGAAGGTGATCAGTCCGC 59.248 52.381 0.00 0.00 0.00 5.54
135 136 2.032302 CGAGTAGAAGGTGATCAGTCCG 59.968 54.545 0.00 0.00 0.00 4.79
136 137 2.223618 GCGAGTAGAAGGTGATCAGTCC 60.224 54.545 0.00 0.00 0.00 3.85
137 138 2.539953 CGCGAGTAGAAGGTGATCAGTC 60.540 54.545 0.00 0.00 0.00 3.51
138 139 1.402259 CGCGAGTAGAAGGTGATCAGT 59.598 52.381 0.00 0.00 0.00 3.41
139 140 1.268794 CCGCGAGTAGAAGGTGATCAG 60.269 57.143 8.23 0.00 0.00 2.90
140 141 0.738975 CCGCGAGTAGAAGGTGATCA 59.261 55.000 8.23 0.00 0.00 2.92
141 142 1.022735 TCCGCGAGTAGAAGGTGATC 58.977 55.000 8.23 0.00 0.00 2.92
142 143 0.739561 GTCCGCGAGTAGAAGGTGAT 59.260 55.000 8.23 0.00 0.00 3.06
143 144 1.642037 CGTCCGCGAGTAGAAGGTGA 61.642 60.000 8.23 0.00 41.33 4.02
144 145 1.226323 CGTCCGCGAGTAGAAGGTG 60.226 63.158 8.23 0.00 41.33 4.00
145 146 0.391661 TACGTCCGCGAGTAGAAGGT 60.392 55.000 8.23 0.46 42.00 3.50
146 147 0.729116 TTACGTCCGCGAGTAGAAGG 59.271 55.000 8.23 0.00 42.00 3.46
147 148 1.396301 ACTTACGTCCGCGAGTAGAAG 59.604 52.381 8.23 8.08 42.00 2.85
148 149 1.129251 CACTTACGTCCGCGAGTAGAA 59.871 52.381 8.23 0.00 42.00 2.10
149 150 0.723414 CACTTACGTCCGCGAGTAGA 59.277 55.000 8.23 0.00 42.00 2.59
150 151 0.247974 CCACTTACGTCCGCGAGTAG 60.248 60.000 8.23 6.07 42.00 2.57
151 152 0.673333 TCCACTTACGTCCGCGAGTA 60.673 55.000 8.23 6.30 42.00 2.59
152 153 1.518056 TTCCACTTACGTCCGCGAGT 61.518 55.000 8.23 7.44 42.00 4.18
153 154 0.797249 CTTCCACTTACGTCCGCGAG 60.797 60.000 8.23 0.00 42.00 5.03
154 155 1.210931 CTTCCACTTACGTCCGCGA 59.789 57.895 8.23 0.00 42.00 5.87
155 156 1.804326 CCTTCCACTTACGTCCGCG 60.804 63.158 0.00 0.00 44.93 6.46
156 157 0.037975 TTCCTTCCACTTACGTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
157 158 2.443887 TTTCCTTCCACTTACGTCCG 57.556 50.000 0.00 0.00 0.00 4.79
158 159 5.702209 TGTAATTTTCCTTCCACTTACGTCC 59.298 40.000 0.00 0.00 0.00 4.79
159 160 6.790285 TGTAATTTTCCTTCCACTTACGTC 57.210 37.500 0.00 0.00 0.00 4.34
160 161 6.769341 ACTTGTAATTTTCCTTCCACTTACGT 59.231 34.615 0.00 0.00 0.00 3.57
161 162 7.198306 ACTTGTAATTTTCCTTCCACTTACG 57.802 36.000 0.00 0.00 0.00 3.18
162 163 7.381408 GCAACTTGTAATTTTCCTTCCACTTAC 59.619 37.037 0.00 0.00 0.00 2.34
163 164 7.430441 GCAACTTGTAATTTTCCTTCCACTTA 58.570 34.615 0.00 0.00 0.00 2.24
164 165 6.280643 GCAACTTGTAATTTTCCTTCCACTT 58.719 36.000 0.00 0.00 0.00 3.16
165 166 5.221441 GGCAACTTGTAATTTTCCTTCCACT 60.221 40.000 0.00 0.00 0.00 4.00
166 167 4.988540 GGCAACTTGTAATTTTCCTTCCAC 59.011 41.667 0.00 0.00 0.00 4.02
167 168 4.261825 CGGCAACTTGTAATTTTCCTTCCA 60.262 41.667 0.00 0.00 0.00 3.53
168 169 4.234574 CGGCAACTTGTAATTTTCCTTCC 58.765 43.478 0.00 0.00 0.00 3.46
169 170 3.673338 GCGGCAACTTGTAATTTTCCTTC 59.327 43.478 0.00 0.00 0.00 3.46
170 171 3.320826 AGCGGCAACTTGTAATTTTCCTT 59.679 39.130 1.45 0.00 0.00 3.36
171 172 2.890945 AGCGGCAACTTGTAATTTTCCT 59.109 40.909 1.45 0.00 0.00 3.36
172 173 2.986479 CAGCGGCAACTTGTAATTTTCC 59.014 45.455 1.45 0.00 0.00 3.13
173 174 2.986479 CCAGCGGCAACTTGTAATTTTC 59.014 45.455 1.45 0.00 0.00 2.29
174 175 2.625790 TCCAGCGGCAACTTGTAATTTT 59.374 40.909 1.45 0.00 0.00 1.82
175 176 2.228822 CTCCAGCGGCAACTTGTAATTT 59.771 45.455 1.45 0.00 0.00 1.82
176 177 1.812571 CTCCAGCGGCAACTTGTAATT 59.187 47.619 1.45 0.00 0.00 1.40
177 178 1.003118 TCTCCAGCGGCAACTTGTAAT 59.997 47.619 1.45 0.00 0.00 1.89
178 179 0.394938 TCTCCAGCGGCAACTTGTAA 59.605 50.000 1.45 0.00 0.00 2.41
179 180 0.613260 ATCTCCAGCGGCAACTTGTA 59.387 50.000 1.45 0.00 0.00 2.41
180 181 0.957395 CATCTCCAGCGGCAACTTGT 60.957 55.000 1.45 0.00 0.00 3.16
181 182 1.798735 CATCTCCAGCGGCAACTTG 59.201 57.895 1.45 0.00 0.00 3.16
182 183 2.042831 GCATCTCCAGCGGCAACTT 61.043 57.895 1.45 0.00 0.00 2.66
183 184 2.437359 GCATCTCCAGCGGCAACT 60.437 61.111 1.45 0.00 0.00 3.16
184 185 2.437359 AGCATCTCCAGCGGCAAC 60.437 61.111 1.45 0.00 37.01 4.17
185 186 2.124983 GAGCATCTCCAGCGGCAA 60.125 61.111 1.45 0.00 37.01 4.52
196 197 1.069204 TGTCGATGGGCTAAGAGCATC 59.931 52.381 0.21 0.00 44.75 3.91
197 198 1.123077 TGTCGATGGGCTAAGAGCAT 58.877 50.000 0.21 0.00 44.75 3.79
198 199 1.069204 GATGTCGATGGGCTAAGAGCA 59.931 52.381 0.21 0.00 44.75 4.26
199 200 1.789506 GATGTCGATGGGCTAAGAGC 58.210 55.000 0.00 0.00 41.46 4.09
200 201 1.338337 ACGATGTCGATGGGCTAAGAG 59.662 52.381 9.67 0.00 43.02 2.85
201 202 1.399714 ACGATGTCGATGGGCTAAGA 58.600 50.000 9.67 0.00 43.02 2.10
202 203 2.293677 AGTACGATGTCGATGGGCTAAG 59.706 50.000 9.67 0.00 43.02 2.18
203 204 2.304092 AGTACGATGTCGATGGGCTAA 58.696 47.619 9.67 0.00 43.02 3.09
204 205 1.977056 AGTACGATGTCGATGGGCTA 58.023 50.000 9.67 0.00 43.02 3.93
205 206 1.880675 CTAGTACGATGTCGATGGGCT 59.119 52.381 9.67 2.66 43.02 5.19
206 207 1.666311 GCTAGTACGATGTCGATGGGC 60.666 57.143 9.67 3.47 43.02 5.36
207 208 1.607148 TGCTAGTACGATGTCGATGGG 59.393 52.381 9.67 0.00 43.02 4.00
208 209 2.918549 GCTGCTAGTACGATGTCGATGG 60.919 54.545 9.67 0.00 43.02 3.51
249 250 5.508200 TTAACGATGCAAAGTGAGGTTTT 57.492 34.783 0.00 0.00 0.00 2.43
251 252 4.518970 ACATTAACGATGCAAAGTGAGGTT 59.481 37.500 0.00 0.00 39.47 3.50
252 253 4.072131 ACATTAACGATGCAAAGTGAGGT 58.928 39.130 0.00 0.00 39.47 3.85
522 529 2.284478 TCAGAGCTGGCTGAGGCT 60.284 61.111 7.74 0.00 39.84 4.58
523 530 2.125188 GTCAGAGCTGGCTGAGGC 60.125 66.667 5.40 0.00 44.92 4.70
524 531 2.583520 GGTCAGAGCTGGCTGAGG 59.416 66.667 5.40 0.00 44.92 3.86
525 532 2.183811 CGGTCAGAGCTGGCTGAG 59.816 66.667 4.96 0.00 44.92 3.35
526 533 4.074526 GCGGTCAGAGCTGGCTGA 62.075 66.667 14.69 1.08 43.95 4.26
652 659 1.078143 GCGGATTGGAGGCAAGTCT 60.078 57.895 0.00 0.00 0.00 3.24
697 704 1.794701 GAACGTTAACCCAACCTCGAC 59.205 52.381 0.00 0.00 33.19 4.20
708 715 1.790896 GCGCGCAAGGAACGTTAAC 60.791 57.895 29.10 0.00 38.28 2.01
736 743 1.264288 GGAAGGAAAACACGAGCACAG 59.736 52.381 0.00 0.00 0.00 3.66
759 766 1.511850 CGTTCATGAACAGAGTGGCA 58.488 50.000 32.06 0.00 41.20 4.92
761 768 1.270839 ACCCGTTCATGAACAGAGTGG 60.271 52.381 32.06 24.55 41.20 4.00
852 859 4.796231 ATCCACGAGACGGCGCAC 62.796 66.667 10.83 0.76 33.86 5.34
858 865 2.278206 CCGCAGATCCACGAGACG 60.278 66.667 6.55 0.00 0.00 4.18
876 883 2.355363 CGGTCACAAGTCGCCGAA 60.355 61.111 6.21 0.00 46.33 4.30
978 985 1.439353 CCTGAATCATGAACCGGCGG 61.439 60.000 27.06 27.06 0.00 6.13
1191 1198 2.994995 ACAGGATCCACGCCGTCA 60.995 61.111 15.82 0.00 0.00 4.35
1250 1257 3.008517 TGATGCTCCCCTGGCGAA 61.009 61.111 0.00 0.00 0.00 4.70
1281 1288 0.671781 CCACCGTCTTCTTGCTCAGG 60.672 60.000 0.00 0.00 0.00 3.86
1323 1330 1.281899 CACTTCTCTTCGGCGAATCC 58.718 55.000 23.96 0.00 0.00 3.01
1344 1351 3.584052 CGCCGACTACCCTCCTCG 61.584 72.222 0.00 0.00 0.00 4.63
1570 1577 1.033746 ATGAAAGGACCTGCCATGCG 61.034 55.000 0.00 0.00 40.02 4.73
1803 1810 1.153667 CTGCTTCCTCGCTCTGGAC 60.154 63.158 0.00 0.00 32.65 4.02
1872 1879 7.086376 GCTGCAATCATAACATTATAACAGGG 58.914 38.462 0.00 0.00 0.00 4.45
2238 2260 2.298610 CTACTCCAGTGGCATAGTCGA 58.701 52.381 3.51 0.00 0.00 4.20
2322 2344 1.176527 GCCTGCCAAGTAGAATGCAA 58.823 50.000 0.00 0.00 32.58 4.08
2589 2616 7.998383 ACACATGATATTATTGAGCCCAAGTAA 59.002 33.333 0.00 0.00 35.48 2.24
2664 2691 1.981256 AATGAGTTGTGTGGGTGGTC 58.019 50.000 0.00 0.00 0.00 4.02
2789 2816 0.036577 ACTGCATCTGTCTGTCAGCC 60.037 55.000 0.00 0.00 43.32 4.85
2801 2828 5.306532 ACAAACAATGAGATCACTGCATC 57.693 39.130 0.00 0.00 0.00 3.91
3017 3054 4.560128 TCGAATGACCAGCTGCTTATATC 58.440 43.478 8.66 0.99 0.00 1.63
3118 3155 3.458189 ACATCGACATGCTTAGCCTAAC 58.542 45.455 0.29 0.00 32.57 2.34
3135 3172 6.774354 ATCAAGTTCACAATGCAAAACATC 57.226 33.333 0.00 0.00 38.34 3.06
3147 3184 3.129113 GCCATGCACATATCAAGTTCACA 59.871 43.478 0.00 0.00 0.00 3.58
3153 3190 4.336153 TGTTGTAGCCATGCACATATCAAG 59.664 41.667 0.00 0.00 0.00 3.02
3543 3593 3.243434 TGCTAACTCGCCAAGTATAGAGC 60.243 47.826 0.00 0.00 37.17 4.09
3593 3643 7.753580 GGGTTTTCATTTTTAGATTGTACGGAG 59.246 37.037 0.00 0.00 0.00 4.63
3594 3644 7.230913 TGGGTTTTCATTTTTAGATTGTACGGA 59.769 33.333 0.00 0.00 0.00 4.69
3595 3645 7.371936 TGGGTTTTCATTTTTAGATTGTACGG 58.628 34.615 0.00 0.00 0.00 4.02
3596 3646 8.079809 ACTGGGTTTTCATTTTTAGATTGTACG 58.920 33.333 0.00 0.00 0.00 3.67
3776 3841 4.314961 TCTGTTGCTTCACGTGTGATTAT 58.685 39.130 16.51 0.00 39.64 1.28
3784 3849 1.160329 GGTGCTCTGTTGCTTCACGT 61.160 55.000 0.00 0.00 0.00 4.49
3948 4043 5.192176 TGCTAGATATGATTGTGTTTGGCA 58.808 37.500 0.00 0.00 0.00 4.92
3975 4070 9.851686 AGTAATGACCAATGAAATATTGCTAGA 57.148 29.630 0.00 0.00 0.00 2.43
3978 4073 9.590451 CAAAGTAATGACCAATGAAATATTGCT 57.410 29.630 0.00 0.00 0.00 3.91
3979 4074 9.369904 ACAAAGTAATGACCAATGAAATATTGC 57.630 29.630 0.00 0.00 0.00 3.56
3981 4076 9.787532 CGACAAAGTAATGACCAATGAAATATT 57.212 29.630 0.00 0.00 0.00 1.28
3982 4077 7.915397 GCGACAAAGTAATGACCAATGAAATAT 59.085 33.333 0.00 0.00 0.00 1.28
3983 4078 7.120579 AGCGACAAAGTAATGACCAATGAAATA 59.879 33.333 0.00 0.00 0.00 1.40
4097 4196 5.221742 GGGGATATTGTTTAGAGAGGGAGTG 60.222 48.000 0.00 0.00 0.00 3.51
4099 4198 4.907875 TGGGGATATTGTTTAGAGAGGGAG 59.092 45.833 0.00 0.00 0.00 4.30
4100 4199 4.658901 GTGGGGATATTGTTTAGAGAGGGA 59.341 45.833 0.00 0.00 0.00 4.20
4101 4200 4.412199 TGTGGGGATATTGTTTAGAGAGGG 59.588 45.833 0.00 0.00 0.00 4.30
4102 4201 5.131142 AGTGTGGGGATATTGTTTAGAGAGG 59.869 44.000 0.00 0.00 0.00 3.69
4103 4202 6.240549 AGTGTGGGGATATTGTTTAGAGAG 57.759 41.667 0.00 0.00 0.00 3.20
4104 4203 6.443849 AGAAGTGTGGGGATATTGTTTAGAGA 59.556 38.462 0.00 0.00 0.00 3.10
4105 4204 6.653989 AGAAGTGTGGGGATATTGTTTAGAG 58.346 40.000 0.00 0.00 0.00 2.43
4106 4205 6.636454 AGAAGTGTGGGGATATTGTTTAGA 57.364 37.500 0.00 0.00 0.00 2.10
4107 4206 7.703058 AAAGAAGTGTGGGGATATTGTTTAG 57.297 36.000 0.00 0.00 0.00 1.85
4108 4207 7.039363 CCAAAAGAAGTGTGGGGATATTGTTTA 60.039 37.037 0.00 0.00 0.00 2.01
4109 4208 6.239572 CCAAAAGAAGTGTGGGGATATTGTTT 60.240 38.462 0.00 0.00 0.00 2.83
4110 4209 5.245977 CCAAAAGAAGTGTGGGGATATTGTT 59.754 40.000 0.00 0.00 0.00 2.83
4111 4210 4.772100 CCAAAAGAAGTGTGGGGATATTGT 59.228 41.667 0.00 0.00 0.00 2.71
4112 4211 5.016173 TCCAAAAGAAGTGTGGGGATATTG 58.984 41.667 0.00 0.00 32.95 1.90
4113 4212 5.269554 TCCAAAAGAAGTGTGGGGATATT 57.730 39.130 0.00 0.00 32.95 1.28
4114 4213 4.946160 TCCAAAAGAAGTGTGGGGATAT 57.054 40.909 0.00 0.00 32.95 1.63
4115 4214 4.599041 CATCCAAAAGAAGTGTGGGGATA 58.401 43.478 0.00 0.00 32.66 2.59
4116 4215 3.434309 CATCCAAAAGAAGTGTGGGGAT 58.566 45.455 0.00 0.00 34.13 3.85
4117 4216 2.875296 CATCCAAAAGAAGTGTGGGGA 58.125 47.619 0.00 0.00 32.95 4.81
4118 4217 1.273327 GCATCCAAAAGAAGTGTGGGG 59.727 52.381 0.00 0.00 32.95 4.96
4119 4218 1.273327 GGCATCCAAAAGAAGTGTGGG 59.727 52.381 0.00 0.00 32.95 4.61
4120 4219 1.962807 TGGCATCCAAAAGAAGTGTGG 59.037 47.619 0.00 0.00 0.00 4.17
4121 4220 3.068590 ACTTGGCATCCAAAAGAAGTGTG 59.931 43.478 0.00 0.00 43.44 3.82
4122 4221 3.299503 ACTTGGCATCCAAAAGAAGTGT 58.700 40.909 0.00 0.00 43.44 3.55
4123 4222 4.616835 GCTACTTGGCATCCAAAAGAAGTG 60.617 45.833 10.20 0.00 43.44 3.16
4124 4223 3.507622 GCTACTTGGCATCCAAAAGAAGT 59.492 43.478 10.20 0.00 43.44 3.01
4125 4224 3.760684 AGCTACTTGGCATCCAAAAGAAG 59.239 43.478 10.20 0.00 43.44 2.85
4126 4225 3.766545 AGCTACTTGGCATCCAAAAGAA 58.233 40.909 10.20 0.00 43.44 2.52
4127 4226 3.439857 AGCTACTTGGCATCCAAAAGA 57.560 42.857 10.20 0.00 43.44 2.52
4128 4227 5.841957 ATAAGCTACTTGGCATCCAAAAG 57.158 39.130 0.00 2.34 43.44 2.27
4129 4228 7.896383 AATATAAGCTACTTGGCATCCAAAA 57.104 32.000 0.00 0.00 43.44 2.44
4130 4229 9.013229 CATAATATAAGCTACTTGGCATCCAAA 57.987 33.333 0.00 0.00 43.44 3.28
4131 4230 8.163408 ACATAATATAAGCTACTTGGCATCCAA 58.837 33.333 0.00 0.00 41.69 3.53
4132 4231 7.689299 ACATAATATAAGCTACTTGGCATCCA 58.311 34.615 0.00 0.00 34.17 3.41
4133 4232 8.567285 AACATAATATAAGCTACTTGGCATCC 57.433 34.615 0.00 0.00 34.17 3.51
4154 4253 8.285394 GCGTCAGAAATGACATCAATATAACAT 58.715 33.333 8.91 0.00 38.65 2.71
4155 4254 7.254761 GGCGTCAGAAATGACATCAATATAACA 60.255 37.037 8.91 0.00 38.65 2.41
4156 4255 7.041780 AGGCGTCAGAAATGACATCAATATAAC 60.042 37.037 8.91 0.00 38.65 1.89
4157 4256 6.992123 AGGCGTCAGAAATGACATCAATATAA 59.008 34.615 8.91 0.00 38.65 0.98
4158 4257 6.524734 AGGCGTCAGAAATGACATCAATATA 58.475 36.000 8.91 0.00 38.65 0.86
4159 4258 5.371526 AGGCGTCAGAAATGACATCAATAT 58.628 37.500 8.91 0.00 38.65 1.28
4160 4259 4.769688 AGGCGTCAGAAATGACATCAATA 58.230 39.130 8.91 0.00 38.65 1.90
4161 4260 3.614092 AGGCGTCAGAAATGACATCAAT 58.386 40.909 8.91 0.00 38.65 2.57
4162 4261 3.057969 AGGCGTCAGAAATGACATCAA 57.942 42.857 8.91 0.00 38.65 2.57
4163 4262 2.768253 AGGCGTCAGAAATGACATCA 57.232 45.000 8.91 0.00 38.65 3.07
4164 4263 2.352960 GGAAGGCGTCAGAAATGACATC 59.647 50.000 8.91 0.65 38.65 3.06
4165 4264 2.290260 TGGAAGGCGTCAGAAATGACAT 60.290 45.455 8.91 0.00 38.65 3.06
4166 4265 1.071542 TGGAAGGCGTCAGAAATGACA 59.928 47.619 8.91 0.00 38.65 3.58
4167 4266 1.808411 TGGAAGGCGTCAGAAATGAC 58.192 50.000 2.23 0.00 35.59 3.06
4168 4267 2.787473 ATGGAAGGCGTCAGAAATGA 57.213 45.000 2.23 0.00 0.00 2.57
4169 4268 3.191162 TGAAATGGAAGGCGTCAGAAATG 59.809 43.478 2.23 0.00 0.00 2.32
4170 4269 3.420893 TGAAATGGAAGGCGTCAGAAAT 58.579 40.909 2.23 0.00 0.00 2.17
4171 4270 2.857483 TGAAATGGAAGGCGTCAGAAA 58.143 42.857 2.23 0.00 0.00 2.52
4172 4271 2.559698 TGAAATGGAAGGCGTCAGAA 57.440 45.000 2.23 0.00 0.00 3.02
4173 4272 2.787473 ATGAAATGGAAGGCGTCAGA 57.213 45.000 2.23 0.00 0.00 3.27
4174 4273 6.205464 ACATAATATGAAATGGAAGGCGTCAG 59.795 38.462 7.33 0.00 0.00 3.51
4175 4274 6.061441 ACATAATATGAAATGGAAGGCGTCA 58.939 36.000 7.33 0.00 0.00 4.35
4176 4275 6.560253 ACATAATATGAAATGGAAGGCGTC 57.440 37.500 7.33 0.00 0.00 5.19
4177 4276 6.959639 AACATAATATGAAATGGAAGGCGT 57.040 33.333 7.33 0.00 0.00 5.68
4366 4465 4.332268 TGTTTCTACCACAACCACGTTAAC 59.668 41.667 0.00 0.00 0.00 2.01
4369 4468 2.940410 CTGTTTCTACCACAACCACGTT 59.060 45.455 0.00 0.00 0.00 3.99
4370 4469 2.093341 ACTGTTTCTACCACAACCACGT 60.093 45.455 0.00 0.00 0.00 4.49
4446 4545 2.731374 GCCTAGGGCTGCTACTCG 59.269 66.667 11.72 0.00 46.69 4.18
4461 4560 2.902343 GACATGCTAAGGGCCGCC 60.902 66.667 0.00 0.00 40.92 6.13
4462 4561 2.902343 GGACATGCTAAGGGCCGC 60.902 66.667 0.00 0.00 40.92 6.53
4463 4562 2.203209 GGGACATGCTAAGGGCCG 60.203 66.667 0.00 0.00 40.92 6.13
4583 8330 7.150783 TGACCAATATGATGAGATAGAGACG 57.849 40.000 0.00 0.00 0.00 4.18
4695 8484 2.328473 TCACGCTGATTTCAAGACTCG 58.672 47.619 0.00 0.00 0.00 4.18
4712 8501 5.747565 TCAACAATGACGATCAAACTTCAC 58.252 37.500 0.00 0.00 0.00 3.18
4747 8541 1.509644 AACTGCCATCACACACTGCG 61.510 55.000 0.00 0.00 0.00 5.18
4775 8569 3.559655 CCGCACCATTTCTTCGATAATGA 59.440 43.478 13.77 0.00 34.44 2.57
4781 8575 0.250124 ACACCGCACCATTTCTTCGA 60.250 50.000 0.00 0.00 0.00 3.71
4782 8576 0.110238 CACACCGCACCATTTCTTCG 60.110 55.000 0.00 0.00 0.00 3.79
4783 8577 0.951558 ACACACCGCACCATTTCTTC 59.048 50.000 0.00 0.00 0.00 2.87
4842 8649 3.407046 GATCAGCCAGCGCCTTTGC 62.407 63.158 2.29 1.09 34.57 3.68
4854 8703 3.803231 TGCATGTTTTGTTTGTGATCAGC 59.197 39.130 0.00 0.00 0.00 4.26
4855 8704 5.692654 TCATGCATGTTTTGTTTGTGATCAG 59.307 36.000 25.43 0.00 0.00 2.90
4856 8705 5.598769 TCATGCATGTTTTGTTTGTGATCA 58.401 33.333 25.43 0.00 0.00 2.92
4857 8706 6.528014 TTCATGCATGTTTTGTTTGTGATC 57.472 33.333 25.43 0.00 0.00 2.92
4858 8707 6.922247 TTTCATGCATGTTTTGTTTGTGAT 57.078 29.167 25.43 0.00 0.00 3.06
4859 8708 6.541086 GTTTTCATGCATGTTTTGTTTGTGA 58.459 32.000 25.43 0.00 0.00 3.58
4860 8709 5.448479 CGTTTTCATGCATGTTTTGTTTGTG 59.552 36.000 25.43 0.00 0.00 3.33
4861 8710 5.558307 CGTTTTCATGCATGTTTTGTTTGT 58.442 33.333 25.43 0.00 0.00 2.83
4889 8772 2.574212 GCGAACCAGAATTGCGCG 60.574 61.111 0.00 0.00 38.24 6.86
4904 8787 4.963276 TTTCCACATTATTGAAGGAGCG 57.037 40.909 0.00 0.00 34.03 5.03
4920 8803 2.823154 GGAATCGGTTGTGGATTTTCCA 59.177 45.455 0.00 0.00 45.98 3.53
5017 8900 6.035005 CGAAGTTGATCTGATTCGTTACATGT 59.965 38.462 2.69 2.69 39.62 3.21
5091 8975 6.121776 AGTGGTCCAATATGTTTGACTGTA 57.878 37.500 6.41 0.00 32.24 2.74
5246 9130 3.254166 CAGTGCAAAAGGACATACAGCTT 59.746 43.478 0.00 0.00 0.00 3.74
5283 9167 4.466827 TCCTGTTAACCTGACCTTTTTCC 58.533 43.478 2.48 0.00 0.00 3.13
5284 9168 5.358725 TGTTCCTGTTAACCTGACCTTTTTC 59.641 40.000 2.48 0.00 0.00 2.29
5285 9169 5.265989 TGTTCCTGTTAACCTGACCTTTTT 58.734 37.500 2.48 0.00 0.00 1.94
5286 9170 4.862371 TGTTCCTGTTAACCTGACCTTTT 58.138 39.130 2.48 0.00 0.00 2.27
5287 9171 4.513406 TGTTCCTGTTAACCTGACCTTT 57.487 40.909 2.48 0.00 0.00 3.11
5288 9172 4.398319 CATGTTCCTGTTAACCTGACCTT 58.602 43.478 2.48 0.00 29.49 3.50
5289 9173 3.810743 GCATGTTCCTGTTAACCTGACCT 60.811 47.826 2.48 0.00 29.49 3.85
5290 9174 2.488153 GCATGTTCCTGTTAACCTGACC 59.512 50.000 2.48 0.00 29.49 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.