Multiple sequence alignment - TraesCS1A01G306200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G306200 chr1A 100.000 4631 0 0 1 4631 498455124 498450494 0.000000e+00 8552.0
1 TraesCS1A01G306200 chr1A 91.358 81 6 1 1 81 16840124 16840203 4.900000e-20 110.0
2 TraesCS1A01G306200 chr1D 90.355 2312 122 46 95 2341 403239674 403237399 0.000000e+00 2940.0
3 TraesCS1A01G306200 chr1D 88.158 1140 61 28 3452 4563 403236523 403235430 0.000000e+00 1290.0
4 TraesCS1A01G306200 chr1D 95.942 345 12 1 2455 2799 403237401 403237059 4.050000e-155 558.0
5 TraesCS1A01G306200 chr1D 96.624 237 8 0 2844 3080 403237046 403236810 1.210000e-105 394.0
6 TraesCS1A01G306200 chr1D 90.698 172 11 4 3151 3321 225704940 225704773 1.680000e-54 224.0
7 TraesCS1A01G306200 chr1D 94.531 128 7 0 2337 2464 344594235 344594108 1.020000e-46 198.0
8 TraesCS1A01G306200 chr1D 93.421 76 5 0 1 76 289424165 289424090 3.790000e-21 113.0
9 TraesCS1A01G306200 chr1B 92.375 1718 77 27 95 1769 541470778 541469072 0.000000e+00 2398.0
10 TraesCS1A01G306200 chr1B 89.713 1186 72 18 3452 4607 541467273 541466108 0.000000e+00 1469.0
11 TraesCS1A01G306200 chr1B 85.992 721 45 16 1654 2341 541469149 541468452 0.000000e+00 721.0
12 TraesCS1A01G306200 chr1B 96.418 335 12 0 2455 2789 541468454 541468120 1.880000e-153 553.0
13 TraesCS1A01G306200 chr1B 95.833 288 12 0 2793 3080 541468024 541467737 2.520000e-127 466.0
14 TraesCS1A01G306200 chr3D 95.181 166 8 0 989 1154 443258967 443259132 3.550000e-66 263.0
15 TraesCS1A01G306200 chr3D 90.286 175 13 2 3144 3318 449740444 449740274 4.660000e-55 226.0
16 TraesCS1A01G306200 chr3D 91.071 168 11 1 3145 3312 187836308 187836471 1.680000e-54 224.0
17 TraesCS1A01G306200 chr3D 93.077 130 9 0 2922 3051 443260089 443260218 1.700000e-44 191.0
18 TraesCS1A01G306200 chr3D 90.551 127 12 0 2535 2661 443259706 443259832 7.970000e-38 169.0
19 TraesCS1A01G306200 chr3D 93.590 78 5 0 1 78 416217404 416217327 2.930000e-22 117.0
20 TraesCS1A01G306200 chr3D 89.535 86 7 2 1 85 193241393 193241477 1.760000e-19 108.0
21 TraesCS1A01G306200 chr3B 94.578 166 9 0 989 1154 581026436 581026601 1.650000e-64 257.0
22 TraesCS1A01G306200 chr3B 95.238 126 6 0 2332 2457 658489675 658489550 2.830000e-47 200.0
23 TraesCS1A01G306200 chr3B 93.077 130 9 0 2922 3051 581030347 581030476 1.700000e-44 191.0
24 TraesCS1A01G306200 chr3B 89.630 135 12 2 2535 2667 581029964 581030098 2.220000e-38 171.0
25 TraesCS1A01G306200 chr3A 93.976 166 10 0 989 1154 584276532 584276697 7.690000e-63 252.0
26 TraesCS1A01G306200 chr3A 98.361 122 2 0 2336 2457 24029952 24030073 1.010000e-51 215.0
27 TraesCS1A01G306200 chr3A 93.077 130 9 0 2922 3051 584277629 584277758 1.700000e-44 191.0
28 TraesCS1A01G306200 chr3A 90.370 135 11 2 2535 2667 584277248 584277382 4.760000e-40 176.0
29 TraesCS1A01G306200 chr3A 92.771 83 5 1 1 83 280775375 280775456 8.140000e-23 119.0
30 TraesCS1A01G306200 chr7A 93.827 162 6 1 3151 3312 451519966 451519809 1.660000e-59 241.0
31 TraesCS1A01G306200 chr7A 92.500 160 8 1 3151 3310 494786984 494786829 4.660000e-55 226.0
32 TraesCS1A01G306200 chr7D 92.262 168 9 1 3145 3312 397554916 397555079 7.750000e-58 235.0
33 TraesCS1A01G306200 chr7D 93.284 134 7 2 2326 2457 31949659 31949792 3.660000e-46 196.0
34 TraesCS1A01G306200 chr6B 91.617 167 10 1 3145 3311 481857851 481858013 1.300000e-55 228.0
35 TraesCS1A01G306200 chr6B 92.683 82 5 1 1 82 332261432 332261512 2.930000e-22 117.0
36 TraesCS1A01G306200 chr5A 91.463 164 14 0 991 1154 645261070 645261233 4.660000e-55 226.0
37 TraesCS1A01G306200 chr5A 89.385 179 12 3 3134 3312 320214236 320214407 7.800000e-53 219.0
38 TraesCS1A01G306200 chr7B 91.071 168 11 1 3145 3312 401532561 401532724 1.680000e-54 224.0
39 TraesCS1A01G306200 chr5D 90.854 164 15 0 991 1154 517840464 517840627 2.170000e-53 220.0
40 TraesCS1A01G306200 chr5D 92.500 80 6 0 1 80 87803427 87803348 1.050000e-21 115.0
41 TraesCS1A01G306200 chr5B 90.854 164 15 0 991 1154 650546192 650546355 2.170000e-53 220.0
42 TraesCS1A01G306200 chr5B 91.489 141 10 2 2339 2479 268959545 268959407 4.730000e-45 193.0
43 TraesCS1A01G306200 chr5B 96.000 75 3 0 3 77 51844536 51844462 6.290000e-24 122.0
44 TraesCS1A01G306200 chr4D 98.347 121 2 0 2337 2457 494876032 494875912 3.630000e-51 213.0
45 TraesCS1A01G306200 chr4D 92.754 138 5 4 2339 2475 367720769 367720902 1.310000e-45 195.0
46 TraesCS1A01G306200 chr4D 92.683 82 5 1 1 82 273828864 273828944 2.930000e-22 117.0
47 TraesCS1A01G306200 chr4D 93.506 77 5 0 1 77 48708731 48708655 1.050000e-21 115.0
48 TraesCS1A01G306200 chr4D 92.405 79 6 0 1 79 310470313 310470391 3.790000e-21 113.0
49 TraesCS1A01G306200 chr4D 90.244 82 7 1 1 82 155596062 155595982 6.340000e-19 106.0
50 TraesCS1A01G306200 chr2D 94.656 131 6 1 2337 2466 437904057 437903927 7.860000e-48 202.0
51 TraesCS1A01G306200 chr2D 88.957 163 16 2 991 1153 277672710 277672870 2.830000e-47 200.0
52 TraesCS1A01G306200 chr2B 92.308 143 9 2 2322 2463 518048461 518048320 7.860000e-48 202.0
53 TraesCS1A01G306200 chr6D 93.671 79 5 0 1 79 141388793 141388871 8.140000e-23 119.0
54 TraesCS1A01G306200 chr6D 92.500 80 5 1 1 80 440504773 440504851 3.790000e-21 113.0
55 TraesCS1A01G306200 chr6D 93.421 76 5 0 1 76 444471159 444471234 3.790000e-21 113.0
56 TraesCS1A01G306200 chr6D 90.361 83 6 2 1 82 450529078 450528997 1.760000e-19 108.0
57 TraesCS1A01G306200 chr6D 90.909 77 6 1 3 79 90441789 90441864 8.200000e-18 102.0
58 TraesCS1A01G306200 chr6D 90.667 75 7 0 1 75 410373594 410373520 2.950000e-17 100.0
59 TraesCS1A01G306200 chrUn 94.667 75 4 0 1 75 28673523 28673449 2.930000e-22 117.0
60 TraesCS1A01G306200 chrUn 92.105 76 6 0 1 76 105424015 105423940 1.760000e-19 108.0
61 TraesCS1A01G306200 chrUn 90.789 76 6 1 1 76 29714962 29715036 2.950000e-17 100.0
62 TraesCS1A01G306200 chrUn 89.189 74 8 0 2 75 35835460 35835387 4.930000e-15 93.5
63 TraesCS1A01G306200 chrUn 86.747 83 10 1 1 82 1411094 1411012 1.770000e-14 91.6
64 TraesCS1A01G306200 chrUn 88.158 76 9 0 1 76 202180522 202180447 1.770000e-14 91.6
65 TraesCS1A01G306200 chrUn 88.158 76 9 0 1 76 210631121 210631196 1.770000e-14 91.6
66 TraesCS1A01G306200 chrUn 88.158 76 9 0 1 76 258432692 258432767 1.770000e-14 91.6
67 TraesCS1A01G306200 chrUn 88.158 76 9 0 1 76 443157912 443157837 1.770000e-14 91.6
68 TraesCS1A01G306200 chr4A 93.590 78 5 0 1 78 63122604 63122527 2.930000e-22 117.0
69 TraesCS1A01G306200 chr2A 93.506 77 5 0 1 77 578489003 578489079 1.050000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G306200 chr1A 498450494 498455124 4630 True 8552.000000 8552 100.000000 1 4631 1 chr1A.!!$R1 4630
1 TraesCS1A01G306200 chr1D 403235430 403239674 4244 True 1295.500000 2940 92.769750 95 4563 4 chr1D.!!$R4 4468
2 TraesCS1A01G306200 chr1B 541466108 541470778 4670 True 1121.400000 2398 92.066200 95 4607 5 chr1B.!!$R1 4512
3 TraesCS1A01G306200 chr3D 443258967 443260218 1251 False 207.666667 263 92.936333 989 3051 3 chr3D.!!$F3 2062
4 TraesCS1A01G306200 chr3B 581026436 581030476 4040 False 206.333333 257 92.428333 989 3051 3 chr3B.!!$F1 2062
5 TraesCS1A01G306200 chr3A 584276532 584277758 1226 False 206.333333 252 92.474333 989 3051 3 chr3A.!!$F3 2062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.454285 CAAGTTAATGGCACCGCACG 60.454 55.000 0.00 0.0 0.00 5.34 F
503 509 1.005630 CCATTCGCCGGATCTCTCC 60.006 63.158 5.05 0.0 38.29 3.71 F
1898 2916 0.107456 CATGAGCCGCATAACCTCCT 59.893 55.000 0.00 0.0 34.82 3.69 F
2448 5221 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1371 0.321653 CTAAGGCAGGCAAGACCGTT 60.322 55.000 0.0 0.0 46.52 4.44 R
2428 5201 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.0 0.0 0.00 4.46 R
3287 6360 1.621814 CTCCCTCCGTTCCTAAACACA 59.378 52.381 0.0 0.0 34.93 3.72 R
4430 7799 1.002257 ACGCCTTCCACATGATGCA 60.002 52.632 0.0 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
37 38 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
38 39 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
52 53 6.801539 CTTTGACCAAAGCTAATACACAGA 57.198 37.500 9.25 0.00 40.94 3.41
53 54 6.801539 TTTGACCAAAGCTAATACACAGAG 57.198 37.500 0.00 0.00 0.00 3.35
54 55 5.483685 TGACCAAAGCTAATACACAGAGT 57.516 39.130 0.00 0.00 0.00 3.24
55 56 6.599356 TGACCAAAGCTAATACACAGAGTA 57.401 37.500 0.00 0.00 37.06 2.59
56 57 6.999950 TGACCAAAGCTAATACACAGAGTAA 58.000 36.000 0.00 0.00 36.05 2.24
57 58 7.446769 TGACCAAAGCTAATACACAGAGTAAA 58.553 34.615 0.00 0.00 36.05 2.01
58 59 8.100791 TGACCAAAGCTAATACACAGAGTAAAT 58.899 33.333 0.00 0.00 36.05 1.40
59 60 9.595823 GACCAAAGCTAATACACAGAGTAAATA 57.404 33.333 0.00 0.00 36.05 1.40
60 61 9.953565 ACCAAAGCTAATACACAGAGTAAATAA 57.046 29.630 0.00 0.00 36.05 1.40
83 84 6.870895 AAAAAGGAGGGAGTACTAAGTAGG 57.129 41.667 0.00 0.00 0.00 3.18
84 85 5.810456 AAAGGAGGGAGTACTAAGTAGGA 57.190 43.478 0.00 0.00 0.00 2.94
85 86 5.810456 AAGGAGGGAGTACTAAGTAGGAA 57.190 43.478 0.00 0.00 0.00 3.36
86 87 5.810456 AGGAGGGAGTACTAAGTAGGAAA 57.190 43.478 0.00 0.00 0.00 3.13
87 88 5.768752 AGGAGGGAGTACTAAGTAGGAAAG 58.231 45.833 0.00 0.00 0.00 2.62
88 89 5.495436 AGGAGGGAGTACTAAGTAGGAAAGA 59.505 44.000 0.00 0.00 0.00 2.52
89 90 6.162600 AGGAGGGAGTACTAAGTAGGAAAGAT 59.837 42.308 0.00 0.00 0.00 2.40
90 91 6.491062 GGAGGGAGTACTAAGTAGGAAAGATC 59.509 46.154 0.00 0.00 0.00 2.75
91 92 7.228652 AGGGAGTACTAAGTAGGAAAGATCT 57.771 40.000 0.00 0.00 0.00 2.75
92 93 7.292319 AGGGAGTACTAAGTAGGAAAGATCTC 58.708 42.308 0.00 0.00 0.00 2.75
93 94 7.129816 AGGGAGTACTAAGTAGGAAAGATCTCT 59.870 40.741 0.00 0.00 0.00 3.10
142 143 4.191544 TCTGGAATCACCGCTATTTTCTG 58.808 43.478 0.00 0.00 42.61 3.02
144 145 2.945668 GGAATCACCGCTATTTTCTGCT 59.054 45.455 0.00 0.00 0.00 4.24
201 202 0.454285 CAAGTTAATGGCACCGCACG 60.454 55.000 0.00 0.00 0.00 5.34
297 300 2.046892 CGGTGACCCTCCAAGCAG 60.047 66.667 0.00 0.00 0.00 4.24
314 317 5.477510 CAAGCAGCTCCCTATATAGACTTG 58.522 45.833 11.53 8.63 0.00 3.16
432 438 3.595173 GCAAAGGAAGAGAAGAGGAGAC 58.405 50.000 0.00 0.00 0.00 3.36
503 509 1.005630 CCATTCGCCGGATCTCTCC 60.006 63.158 5.05 0.00 38.29 3.71
572 622 4.527564 CCGATTCGTGATCTTATTTTGCC 58.472 43.478 5.20 0.00 32.30 4.52
595 645 2.158959 CCGTGATCGCGTTCAGTCC 61.159 63.158 25.58 7.98 35.54 3.85
619 669 3.407967 TTCTGGTGGATCGGGGGC 61.408 66.667 0.00 0.00 0.00 5.80
637 687 1.453524 GGCGTTCGATCTCATTCATCG 59.546 52.381 0.00 0.00 43.77 3.84
694 744 2.678336 GACGGTGTGATTTGAGGAATCC 59.322 50.000 0.00 0.00 42.90 3.01
697 747 2.359900 GTGTGATTTGAGGAATCCGCT 58.640 47.619 4.37 0.00 42.90 5.52
701 751 1.718757 ATTTGAGGAATCCGCTGCGC 61.719 55.000 18.00 0.00 0.00 6.09
963 1015 2.626780 GGGTTGACGCTTTGGCCTC 61.627 63.158 3.32 0.00 34.44 4.70
1170 1222 4.330894 GGTAAGCCCACGTTCTATGTAAAC 59.669 45.833 0.00 0.00 0.00 2.01
1178 1230 6.869913 CCCACGTTCTATGTAAACTTTCTGTA 59.130 38.462 0.00 0.00 0.00 2.74
1248 1308 9.436751 TCAATATGTTGTGGCAGCTTTAGCTTC 62.437 40.741 0.51 0.00 41.87 3.86
1298 1359 3.450904 TGGTAGGCAAGTTAGAGACCAT 58.549 45.455 0.00 0.00 30.67 3.55
1308 1369 6.621596 GCAAGTTAGAGACCATTTTAGTGCAG 60.622 42.308 0.00 0.00 0.00 4.41
1310 1371 6.769512 AGTTAGAGACCATTTTAGTGCAGAA 58.230 36.000 0.00 0.00 0.00 3.02
1312 1373 5.948992 AGAGACCATTTTAGTGCAGAAAC 57.051 39.130 0.00 0.00 0.00 2.78
1350 1411 9.533253 CCTTAGGAATAACATTAATGCTTTTGG 57.467 33.333 15.48 0.00 0.00 3.28
1376 1437 9.102757 GTAATGAAGATTACTTGAAGCTGATCA 57.897 33.333 0.00 0.00 40.56 2.92
1393 1454 7.212976 AGCTGATCACGAGTTGATTATATGTT 58.787 34.615 0.00 0.00 45.67 2.71
1432 1493 8.924511 ATTTTGGTAGCTTATGTATGTGCTAT 57.075 30.769 0.00 0.00 39.69 2.97
1481 1542 9.217223 GCCATGTTATTTGTACGTACATTAAAG 57.783 33.333 27.82 18.39 35.89 1.85
1551 1618 7.432869 TGAAGACAAACCATTCATGTTTAAGG 58.567 34.615 0.00 0.00 0.00 2.69
1584 1651 7.395190 TGTCTGCTAATTGTTTTGCATATCT 57.605 32.000 0.00 0.00 41.57 1.98
1585 1652 7.252708 TGTCTGCTAATTGTTTTGCATATCTG 58.747 34.615 0.00 0.00 41.57 2.90
1626 1693 1.771255 AGCTTGGGAGTTCAGTCAAGT 59.229 47.619 0.00 0.00 38.90 3.16
1636 1703 5.163561 GGAGTTCAGTCAAGTCAGGATAGAG 60.164 48.000 0.00 0.00 36.27 2.43
1640 1707 4.702612 TCAGTCAAGTCAGGATAGAGTGTC 59.297 45.833 0.00 0.00 32.81 3.67
1721 1793 0.608130 ATTCAGGCGTGTCAGCACTA 59.392 50.000 6.26 0.00 43.16 2.74
1758 1831 2.496070 AGATTAAGGCGTGTCAGCACTA 59.504 45.455 0.00 0.00 43.16 2.74
1898 2916 0.107456 CATGAGCCGCATAACCTCCT 59.893 55.000 0.00 0.00 34.82 3.69
1899 2917 0.107456 ATGAGCCGCATAACCTCCTG 59.893 55.000 0.00 0.00 34.82 3.86
1934 3087 1.271054 GGTGTCTGACCTTGACATGCT 60.271 52.381 5.17 0.00 44.74 3.79
1937 3090 2.104622 TGTCTGACCTTGACATGCTTGA 59.895 45.455 6.60 0.00 39.23 3.02
2092 4856 6.647481 TGCTGATGAAATCTGAATGTTTTTGG 59.353 34.615 0.00 0.00 45.81 3.28
2256 5023 9.002600 TCATTTATATAGCAGTTGCACTATTGG 57.997 33.333 6.90 0.00 45.16 3.16
2270 5037 4.576463 GCACTATTGGAATTACACTGAGGG 59.424 45.833 0.00 0.00 0.00 4.30
2291 5064 2.004733 GCATGCCTTCTTTGAATTGCC 58.995 47.619 6.36 0.00 0.00 4.52
2332 5105 4.637387 TGGAATTTTGGAATGTGCCATT 57.363 36.364 0.67 0.67 37.86 3.16
2338 5111 2.816204 TGGAATGTGCCATTGTGTTG 57.184 45.000 5.31 0.00 31.66 3.33
2339 5112 2.037901 TGGAATGTGCCATTGTGTTGT 58.962 42.857 5.31 0.00 31.66 3.32
2340 5113 3.225940 TGGAATGTGCCATTGTGTTGTA 58.774 40.909 5.31 0.00 31.66 2.41
2341 5114 3.005261 TGGAATGTGCCATTGTGTTGTAC 59.995 43.478 5.31 0.00 31.66 2.90
2342 5115 3.255642 GGAATGTGCCATTGTGTTGTACT 59.744 43.478 5.31 0.00 0.00 2.73
2343 5116 4.475944 GAATGTGCCATTGTGTTGTACTC 58.524 43.478 5.31 0.00 0.00 2.59
2344 5117 2.226330 TGTGCCATTGTGTTGTACTCC 58.774 47.619 0.00 0.00 0.00 3.85
2345 5118 1.539827 GTGCCATTGTGTTGTACTCCC 59.460 52.381 0.00 0.00 0.00 4.30
2346 5119 1.423541 TGCCATTGTGTTGTACTCCCT 59.576 47.619 0.00 0.00 0.00 4.20
2347 5120 2.084546 GCCATTGTGTTGTACTCCCTC 58.915 52.381 0.00 0.00 0.00 4.30
2348 5121 2.711542 CCATTGTGTTGTACTCCCTCC 58.288 52.381 0.00 0.00 0.00 4.30
2349 5122 2.346803 CATTGTGTTGTACTCCCTCCG 58.653 52.381 0.00 0.00 0.00 4.63
2350 5123 1.416243 TTGTGTTGTACTCCCTCCGT 58.584 50.000 0.00 0.00 0.00 4.69
2351 5124 0.963962 TGTGTTGTACTCCCTCCGTC 59.036 55.000 0.00 0.00 0.00 4.79
2352 5125 0.245813 GTGTTGTACTCCCTCCGTCC 59.754 60.000 0.00 0.00 0.00 4.79
2353 5126 1.246056 TGTTGTACTCCCTCCGTCCG 61.246 60.000 0.00 0.00 0.00 4.79
2354 5127 1.679977 TTGTACTCCCTCCGTCCGG 60.680 63.158 0.00 0.00 0.00 5.14
2355 5128 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
2356 5129 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2357 5130 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2358 5131 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
2359 5132 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
2360 5133 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
2361 5134 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
2362 5135 0.250597 CCCTCCGTCCGGAAAAACTT 60.251 55.000 5.23 0.00 44.66 2.66
2363 5136 0.872388 CCTCCGTCCGGAAAAACTTG 59.128 55.000 5.23 0.00 44.66 3.16
2364 5137 1.589803 CTCCGTCCGGAAAAACTTGT 58.410 50.000 5.23 0.00 44.66 3.16
2365 5138 1.529865 CTCCGTCCGGAAAAACTTGTC 59.470 52.381 5.23 0.00 44.66 3.18
2366 5139 0.589708 CCGTCCGGAAAAACTTGTCC 59.410 55.000 5.23 0.00 37.50 4.02
2367 5140 0.589708 CGTCCGGAAAAACTTGTCCC 59.410 55.000 5.23 0.00 0.00 4.46
2368 5141 1.812708 CGTCCGGAAAAACTTGTCCCT 60.813 52.381 5.23 0.00 0.00 4.20
2369 5142 1.878088 GTCCGGAAAAACTTGTCCCTC 59.122 52.381 5.23 0.00 0.00 4.30
2370 5143 1.491332 TCCGGAAAAACTTGTCCCTCA 59.509 47.619 0.00 0.00 0.00 3.86
2371 5144 2.092321 TCCGGAAAAACTTGTCCCTCAA 60.092 45.455 0.00 0.00 34.61 3.02
2372 5145 2.691011 CCGGAAAAACTTGTCCCTCAAA 59.309 45.455 0.00 0.00 35.48 2.69
2373 5146 3.320826 CCGGAAAAACTTGTCCCTCAAAT 59.679 43.478 0.00 0.00 35.48 2.32
2374 5147 4.298332 CGGAAAAACTTGTCCCTCAAATG 58.702 43.478 0.00 0.00 35.48 2.32
2375 5148 4.631131 GGAAAAACTTGTCCCTCAAATGG 58.369 43.478 0.00 0.00 35.48 3.16
2376 5149 4.343814 GGAAAAACTTGTCCCTCAAATGGA 59.656 41.667 0.00 0.00 35.48 3.41
2377 5150 5.012046 GGAAAAACTTGTCCCTCAAATGGAT 59.988 40.000 0.00 0.00 35.48 3.41
2378 5151 5.473066 AAAACTTGTCCCTCAAATGGATG 57.527 39.130 0.00 0.00 35.48 3.51
2379 5152 3.814504 ACTTGTCCCTCAAATGGATGT 57.185 42.857 0.00 0.00 35.48 3.06
2380 5153 4.927267 ACTTGTCCCTCAAATGGATGTA 57.073 40.909 0.00 0.00 35.48 2.29
2381 5154 5.456921 ACTTGTCCCTCAAATGGATGTAT 57.543 39.130 0.00 0.00 35.48 2.29
2382 5155 5.440610 ACTTGTCCCTCAAATGGATGTATC 58.559 41.667 0.00 0.00 35.48 2.24
2383 5156 5.192522 ACTTGTCCCTCAAATGGATGTATCT 59.807 40.000 0.00 0.00 35.48 1.98
2384 5157 6.386927 ACTTGTCCCTCAAATGGATGTATCTA 59.613 38.462 0.00 0.00 35.48 1.98
2385 5158 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2386 5159 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2387 5160 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2388 5161 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2389 5162 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
2390 5163 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
2391 5164 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
2392 5165 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
2393 5166 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
2394 5167 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
2395 5168 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
2396 5169 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
2397 5170 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
2398 5171 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
2411 5184 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2416 5189 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2420 5193 7.568349 AGTGCTAGATACATCCATTTGAGAAA 58.432 34.615 0.00 0.00 0.00 2.52
2422 5195 7.280876 GTGCTAGATACATCCATTTGAGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
2423 5196 7.828717 TGCTAGATACATCCATTTGAGAAACAA 59.171 33.333 0.00 0.00 36.65 2.83
2424 5197 8.341173 GCTAGATACATCCATTTGAGAAACAAG 58.659 37.037 0.00 0.00 39.77 3.16
2425 5198 7.093322 AGATACATCCATTTGAGAAACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
2426 5199 6.888632 AGATACATCCATTTGAGAAACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
2427 5200 5.796424 ACATCCATTTGAGAAACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
2428 5201 5.535333 ACATCCATTTGAGAAACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
2429 5202 4.589216 TCCATTTGAGAAACAAGCTTGG 57.411 40.909 29.18 12.28 39.77 3.61
2430 5203 3.321682 TCCATTTGAGAAACAAGCTTGGG 59.678 43.478 29.18 16.37 39.77 4.12
2431 5204 3.321682 CCATTTGAGAAACAAGCTTGGGA 59.678 43.478 29.18 7.03 39.77 4.37
2434 5207 3.360867 TTGAGAAACAAGCTTGGGACAA 58.639 40.909 29.18 21.59 37.48 3.18
2435 5208 3.381272 TTGAGAAACAAGCTTGGGACAAG 59.619 43.478 29.18 3.71 37.48 3.16
2436 5209 6.232513 TTGAGAAACAAGCTTGGGACAAGC 62.233 45.833 29.18 22.54 43.31 4.01
2446 5219 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
2448 5221 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
2449 5222 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2450 5223 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
2451 5224 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
2504 5291 6.072508 TGTGATCTATTTTCCTTGTGTGCTTC 60.073 38.462 0.00 0.00 0.00 3.86
2519 5306 6.671190 TGTGTGCTTCTCATCTAATGTTTTG 58.329 36.000 0.00 0.00 0.00 2.44
2665 5454 3.244009 CGGATGCTGAATGAGGTATCACT 60.244 47.826 0.00 0.00 38.57 3.41
2667 5456 5.337089 CGGATGCTGAATGAGGTATCACTAT 60.337 44.000 0.00 0.00 38.57 2.12
2697 5675 7.928307 ATAAAGCAATGTCAACACATAGACT 57.072 32.000 0.00 0.00 42.89 3.24
2888 5958 7.041508 GGTTAGCTCTTATCATCATTTCAGTGG 60.042 40.741 0.00 0.00 0.00 4.00
3067 6137 8.090788 ACACTGGTATGGTTTCTAATCTATGT 57.909 34.615 0.00 0.00 0.00 2.29
3082 6152 9.832445 TCTAATCTATGTTGAATGGAAGTTACC 57.168 33.333 0.00 0.00 0.00 2.85
3083 6153 9.838339 CTAATCTATGTTGAATGGAAGTTACCT 57.162 33.333 0.00 0.00 0.00 3.08
3088 6161 6.783708 TGTTGAATGGAAGTTACCTTGTTT 57.216 33.333 0.00 0.00 0.00 2.83
3089 6162 6.568869 TGTTGAATGGAAGTTACCTTGTTTG 58.431 36.000 0.00 0.00 0.00 2.93
3092 6165 5.888724 TGAATGGAAGTTACCTTGTTTGACA 59.111 36.000 0.00 0.00 0.00 3.58
3096 6169 7.504924 TGGAAGTTACCTTGTTTGACAATAG 57.495 36.000 0.00 0.00 37.48 1.73
3114 6187 9.904198 TGACAATAGTTTTATGATTGATCTCCA 57.096 29.630 0.00 0.00 35.12 3.86
3122 6195 9.438291 GTTTTATGATTGATCTCCAATAACACG 57.562 33.333 0.00 0.00 45.00 4.49
3124 6197 6.851222 ATGATTGATCTCCAATAACACGAC 57.149 37.500 0.00 0.00 45.00 4.34
3125 6198 5.977635 TGATTGATCTCCAATAACACGACT 58.022 37.500 0.00 0.00 45.00 4.18
3127 6200 7.726216 TGATTGATCTCCAATAACACGACTAT 58.274 34.615 0.00 0.00 45.00 2.12
3128 6201 7.867909 TGATTGATCTCCAATAACACGACTATC 59.132 37.037 0.00 0.00 45.00 2.08
3130 6203 7.348080 TGATCTCCAATAACACGACTATCTT 57.652 36.000 0.00 0.00 0.00 2.40
3131 6204 8.459911 TGATCTCCAATAACACGACTATCTTA 57.540 34.615 0.00 0.00 0.00 2.10
3132 6205 8.909923 TGATCTCCAATAACACGACTATCTTAA 58.090 33.333 0.00 0.00 0.00 1.85
3133 6206 9.745880 GATCTCCAATAACACGACTATCTTAAA 57.254 33.333 0.00 0.00 0.00 1.52
3143 6216 8.853469 ACACGACTATCTTAAATAAGTACAGC 57.147 34.615 0.00 0.00 34.93 4.40
3144 6217 8.684520 ACACGACTATCTTAAATAAGTACAGCT 58.315 33.333 0.00 0.00 34.93 4.24
3157 6230 9.810545 AAATAAGTACAGCTATTCTCTCTGTTC 57.189 33.333 0.00 0.00 40.96 3.18
3158 6231 5.845391 AGTACAGCTATTCTCTCTGTTCC 57.155 43.478 0.00 0.00 40.96 3.62
3159 6232 5.515106 AGTACAGCTATTCTCTCTGTTCCT 58.485 41.667 0.00 0.00 40.96 3.36
3160 6233 6.664714 AGTACAGCTATTCTCTCTGTTCCTA 58.335 40.000 0.00 0.00 40.96 2.94
3161 6234 7.120051 AGTACAGCTATTCTCTCTGTTCCTAA 58.880 38.462 0.00 0.00 40.96 2.69
3162 6235 6.859112 ACAGCTATTCTCTCTGTTCCTAAA 57.141 37.500 0.00 0.00 37.78 1.85
3163 6236 7.430760 ACAGCTATTCTCTCTGTTCCTAAAT 57.569 36.000 0.00 0.00 37.78 1.40
3164 6237 8.540507 ACAGCTATTCTCTCTGTTCCTAAATA 57.459 34.615 0.00 0.00 37.78 1.40
3165 6238 9.153479 ACAGCTATTCTCTCTGTTCCTAAATAT 57.847 33.333 0.00 0.00 37.78 1.28
3213 6286 8.627208 ATGGACTACATATGGAGCAAAATAAG 57.373 34.615 15.30 0.00 38.26 1.73
3214 6287 7.573710 TGGACTACATATGGAGCAAAATAAGT 58.426 34.615 15.30 0.00 0.00 2.24
3215 6288 7.498900 TGGACTACATATGGAGCAAAATAAGTG 59.501 37.037 15.30 0.00 0.00 3.16
3216 6289 7.715249 GGACTACATATGGAGCAAAATAAGTGA 59.285 37.037 15.30 0.00 0.00 3.41
3217 6290 9.109393 GACTACATATGGAGCAAAATAAGTGAA 57.891 33.333 15.30 0.00 0.00 3.18
3218 6291 9.632638 ACTACATATGGAGCAAAATAAGTGAAT 57.367 29.630 15.30 0.00 0.00 2.57
3220 6293 8.757982 ACATATGGAGCAAAATAAGTGAATCT 57.242 30.769 7.80 0.00 0.00 2.40
3221 6294 9.851686 ACATATGGAGCAAAATAAGTGAATCTA 57.148 29.630 7.80 0.00 0.00 1.98
3223 6296 9.851686 ATATGGAGCAAAATAAGTGAATCTACA 57.148 29.630 0.00 0.00 0.00 2.74
3224 6297 7.377766 TGGAGCAAAATAAGTGAATCTACAC 57.622 36.000 0.00 0.00 40.60 2.90
3236 6309 6.642430 AGTGAATCTACACTCTAGACTACGT 58.358 40.000 0.00 0.00 46.36 3.57
3237 6310 6.757947 AGTGAATCTACACTCTAGACTACGTC 59.242 42.308 0.00 0.00 46.36 4.34
3238 6311 6.757947 GTGAATCTACACTCTAGACTACGTCT 59.242 42.308 0.00 1.82 40.41 4.18
3239 6312 7.920151 GTGAATCTACACTCTAGACTACGTCTA 59.080 40.741 0.00 3.93 39.31 2.59
3240 6313 8.640651 TGAATCTACACTCTAGACTACGTCTAT 58.359 37.037 0.00 0.00 43.08 1.98
3253 6326 8.645730 AGACTACGTCTATATATGTACATCCG 57.354 38.462 12.68 7.04 41.51 4.18
3254 6327 8.256605 AGACTACGTCTATATATGTACATCCGT 58.743 37.037 12.68 11.95 41.51 4.69
3255 6328 9.521503 GACTACGTCTATATATGTACATCCGTA 57.478 37.037 12.68 12.37 0.00 4.02
3259 6332 9.822185 ACGTCTATATATGTACATCCGTATGTA 57.178 33.333 12.68 0.00 44.66 2.29
3265 6338 7.956328 ATATGTACATCCGTATGTAGTCCAT 57.044 36.000 12.68 4.84 46.68 3.41
3267 6340 7.956328 ATGTACATCCGTATGTAGTCCATAT 57.044 36.000 1.41 0.00 46.68 1.78
3268 6341 7.770366 TGTACATCCGTATGTAGTCCATATT 57.230 36.000 0.46 0.00 46.68 1.28
3269 6342 7.599171 TGTACATCCGTATGTAGTCCATATTG 58.401 38.462 0.46 0.00 46.68 1.90
3270 6343 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
3271 6344 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
3272 6345 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
3273 6346 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
3274 6347 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
3275 6348 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3276 6349 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3277 6350 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3285 6358 9.606631 AGTCCATATTGAAATCTCTACAAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
3286 6359 9.606631 GTCCATATTGAAATCTCTACAAAGACT 57.393 33.333 0.00 0.00 0.00 3.24
3291 6364 8.682936 ATTGAAATCTCTACAAAGACTTGTGT 57.317 30.769 0.81 7.75 45.53 3.72
3292 6365 8.506168 TTGAAATCTCTACAAAGACTTGTGTT 57.494 30.769 7.88 0.00 45.53 3.32
3293 6366 8.506168 TGAAATCTCTACAAAGACTTGTGTTT 57.494 30.769 7.88 0.00 45.53 2.83
3294 6367 9.607988 TGAAATCTCTACAAAGACTTGTGTTTA 57.392 29.630 7.88 0.00 45.53 2.01
3296 6369 8.608844 AATCTCTACAAAGACTTGTGTTTAGG 57.391 34.615 7.88 0.00 45.53 2.69
3297 6370 7.356089 TCTCTACAAAGACTTGTGTTTAGGA 57.644 36.000 7.88 0.00 45.53 2.94
3298 6371 7.788026 TCTCTACAAAGACTTGTGTTTAGGAA 58.212 34.615 7.88 0.00 45.53 3.36
3299 6372 7.709613 TCTCTACAAAGACTTGTGTTTAGGAAC 59.290 37.037 7.88 0.00 45.53 3.62
3300 6373 5.479716 ACAAAGACTTGTGTTTAGGAACG 57.520 39.130 0.00 0.00 44.28 3.95
3301 6374 4.334481 ACAAAGACTTGTGTTTAGGAACGG 59.666 41.667 0.00 0.00 44.28 4.44
3302 6375 4.411256 AAGACTTGTGTTTAGGAACGGA 57.589 40.909 0.00 0.00 38.65 4.69
3303 6376 3.991367 AGACTTGTGTTTAGGAACGGAG 58.009 45.455 0.00 0.00 38.65 4.63
3304 6377 3.064931 GACTTGTGTTTAGGAACGGAGG 58.935 50.000 0.00 0.00 38.65 4.30
3305 6378 2.224450 ACTTGTGTTTAGGAACGGAGGG 60.224 50.000 0.00 0.00 38.65 4.30
3310 6383 3.450096 GTGTTTAGGAACGGAGGGAGTAT 59.550 47.826 0.00 0.00 38.65 2.12
3315 6388 7.092757 TGTTTAGGAACGGAGGGAGTATATTTT 60.093 37.037 0.00 0.00 38.65 1.82
3316 6389 8.424133 GTTTAGGAACGGAGGGAGTATATTTTA 58.576 37.037 0.00 0.00 0.00 1.52
3319 6392 8.731591 AGGAACGGAGGGAGTATATTTTAATA 57.268 34.615 0.00 0.00 0.00 0.98
3340 6413 9.868277 TTAATATATGGGAAGCAACAAAACTTG 57.132 29.630 0.00 0.00 0.00 3.16
3341 6414 7.716799 ATATATGGGAAGCAACAAAACTTGA 57.283 32.000 0.00 0.00 0.00 3.02
3343 6416 4.751767 TGGGAAGCAACAAAACTTGAAT 57.248 36.364 0.00 0.00 0.00 2.57
3345 6418 6.418057 TGGGAAGCAACAAAACTTGAATAT 57.582 33.333 0.00 0.00 0.00 1.28
3347 6420 6.183360 TGGGAAGCAACAAAACTTGAATATGT 60.183 34.615 0.00 0.00 0.00 2.29
3348 6421 6.146021 GGGAAGCAACAAAACTTGAATATGTG 59.854 38.462 0.00 0.00 0.00 3.21
3350 6423 7.865385 GGAAGCAACAAAACTTGAATATGTGTA 59.135 33.333 0.00 0.00 0.00 2.90
3352 6425 9.762933 AAGCAACAAAACTTGAATATGTGTAAT 57.237 25.926 0.00 0.00 0.00 1.89
3371 6450 8.812972 TGTGTAATAATAGTCTTGTCTTGAGGT 58.187 33.333 0.00 0.00 0.00 3.85
3372 6451 9.088512 GTGTAATAATAGTCTTGTCTTGAGGTG 57.911 37.037 0.00 0.00 0.00 4.00
3373 6452 8.258007 TGTAATAATAGTCTTGTCTTGAGGTGG 58.742 37.037 0.00 0.00 0.00 4.61
3374 6453 6.875972 ATAATAGTCTTGTCTTGAGGTGGT 57.124 37.500 0.00 0.00 0.00 4.16
3375 6454 2.918712 AGTCTTGTCTTGAGGTGGTG 57.081 50.000 0.00 0.00 0.00 4.17
3376 6455 2.398588 AGTCTTGTCTTGAGGTGGTGA 58.601 47.619 0.00 0.00 0.00 4.02
3377 6456 2.975489 AGTCTTGTCTTGAGGTGGTGAT 59.025 45.455 0.00 0.00 0.00 3.06
3378 6457 4.160329 AGTCTTGTCTTGAGGTGGTGATA 58.840 43.478 0.00 0.00 0.00 2.15
3379 6458 4.021016 AGTCTTGTCTTGAGGTGGTGATAC 60.021 45.833 0.00 0.00 0.00 2.24
3380 6459 3.901222 TCTTGTCTTGAGGTGGTGATACA 59.099 43.478 0.00 0.00 0.00 2.29
3381 6460 3.678056 TGTCTTGAGGTGGTGATACAC 57.322 47.619 0.00 0.00 40.60 2.90
3423 6502 8.970691 ACACAAATTAACATCTATTCACAAGC 57.029 30.769 0.00 0.00 0.00 4.01
3424 6503 8.028938 ACACAAATTAACATCTATTCACAAGCC 58.971 33.333 0.00 0.00 0.00 4.35
3427 6506 9.079833 CAAATTAACATCTATTCACAAGCCAAG 57.920 33.333 0.00 0.00 0.00 3.61
3437 6516 6.655078 ATTCACAAGCCAAGTACTCATTTT 57.345 33.333 0.00 0.00 0.00 1.82
3439 6518 4.887071 TCACAAGCCAAGTACTCATTTTGT 59.113 37.500 0.00 3.08 0.00 2.83
3441 6520 6.017440 TCACAAGCCAAGTACTCATTTTGTAC 60.017 38.462 12.52 0.00 40.19 2.90
3444 6523 4.760204 AGCCAAGTACTCATTTTGTACCAC 59.240 41.667 0.00 0.00 40.61 4.16
3446 6525 4.153475 CCAAGTACTCATTTTGTACCACCG 59.847 45.833 0.00 0.00 40.61 4.94
3450 6529 3.143728 ACTCATTTTGTACCACCGAACC 58.856 45.455 0.00 0.00 0.00 3.62
3454 6795 4.938832 TCATTTTGTACCACCGAACCTATG 59.061 41.667 0.00 0.00 0.00 2.23
3470 6811 6.127730 CGAACCTATGTTTTATGGCCTTTTCT 60.128 38.462 3.32 0.00 33.97 2.52
3473 6814 8.237811 ACCTATGTTTTATGGCCTTTTCTATG 57.762 34.615 3.32 0.00 0.00 2.23
3475 6816 8.912988 CCTATGTTTTATGGCCTTTTCTATGAA 58.087 33.333 3.32 0.00 0.00 2.57
3488 6829 8.730680 GCCTTTTCTATGAAGACTCAATTTACA 58.269 33.333 0.00 0.00 34.49 2.41
3499 6840 7.659652 AGACTCAATTTACAGTAACTTGCTC 57.340 36.000 15.41 12.47 30.96 4.26
3503 6844 7.715249 ACTCAATTTACAGTAACTTGCTCTGAA 59.285 33.333 15.41 1.16 30.96 3.02
3515 6856 5.523369 ACTTGCTCTGAACTTATGTTTTGC 58.477 37.500 0.00 0.31 36.39 3.68
3518 6859 6.241207 TGCTCTGAACTTATGTTTTGCTAC 57.759 37.500 0.00 0.00 36.39 3.58
3520 6861 6.486657 TGCTCTGAACTTATGTTTTGCTACTT 59.513 34.615 0.00 0.00 36.39 2.24
3521 6862 6.798959 GCTCTGAACTTATGTTTTGCTACTTG 59.201 38.462 0.00 0.00 36.39 3.16
3558 6899 3.465990 CACATGTGCTACCTCTGGG 57.534 57.895 13.94 0.00 38.88 4.45
3629 6970 1.450134 TGCGTCAGCTGGCCTTATG 60.450 57.895 13.81 0.00 45.42 1.90
3713 7065 7.175816 TCCATTCGATACTTGATGGTTTTGAAA 59.824 33.333 10.55 0.00 29.31 2.69
3796 7148 7.561356 ACCTGGCAGCTTTAGTATATGAAAATT 59.439 33.333 9.56 0.00 0.00 1.82
3821 7173 4.758674 TCCAGTTTGCATCTTTCTCTTCTG 59.241 41.667 0.00 0.00 0.00 3.02
3838 7190 6.924060 TCTCTTCTGTTGTTGCTACTTAGTTC 59.076 38.462 0.00 0.00 0.00 3.01
3844 7196 6.453092 TGTTGTTGCTACTTAGTTCTACTCC 58.547 40.000 0.00 0.00 0.00 3.85
3847 7199 4.959596 TGCTACTTAGTTCTACTCCGTG 57.040 45.455 0.00 0.00 0.00 4.94
3851 7203 6.430925 TGCTACTTAGTTCTACTCCGTGTTTA 59.569 38.462 0.00 0.00 0.00 2.01
3857 7209 5.315348 AGTTCTACTCCGTGTTTACTCTCT 58.685 41.667 0.00 0.00 0.00 3.10
3862 7214 3.387050 ACTCCGTGTTTACTCTCTTTGGT 59.613 43.478 0.00 0.00 0.00 3.67
3868 7220 5.293569 CGTGTTTACTCTCTTTGGTGTCTTT 59.706 40.000 0.00 0.00 0.00 2.52
3869 7221 6.183360 CGTGTTTACTCTCTTTGGTGTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
3871 7223 7.484959 GTGTTTACTCTCTTTGGTGTCTTTTTG 59.515 37.037 0.00 0.00 0.00 2.44
3893 7245 3.365969 GGATTGGTTTCTGCAACTAACCG 60.366 47.826 15.50 0.00 43.34 4.44
3899 7251 0.602638 TCTGCAACTAACCGCCTGTG 60.603 55.000 0.00 0.00 0.00 3.66
4214 7566 4.275936 ACTTGTCTTGGCATAGTTTGTCAC 59.724 41.667 0.00 0.00 40.39 3.67
4263 7615 6.747125 TGTGTTGATTTCATGTGCAAAGTAT 58.253 32.000 0.00 0.00 0.00 2.12
4264 7616 6.641723 TGTGTTGATTTCATGTGCAAAGTATG 59.358 34.615 0.00 0.00 0.00 2.39
4430 7799 7.446013 TGGAAATAGGAAACGATACAAACACTT 59.554 33.333 0.00 0.00 0.00 3.16
4437 7806 5.627499 AACGATACAAACACTTGCATCAT 57.373 34.783 0.00 0.00 35.73 2.45
4465 7834 4.100084 TGGCTGCGGACATCCTGG 62.100 66.667 0.00 0.00 33.01 4.45
4564 7935 9.941664 CAATTTATGTCATTTTAGGCTAGACAG 57.058 33.333 16.36 2.71 41.85 3.51
4569 7940 4.331168 GTCATTTTAGGCTAGACAGTGCAG 59.669 45.833 0.00 0.00 0.00 4.41
4577 7948 2.346847 GCTAGACAGTGCAGAATTCACG 59.653 50.000 8.44 0.00 37.31 4.35
4578 7949 1.800805 AGACAGTGCAGAATTCACGG 58.199 50.000 8.44 1.41 37.31 4.94
4582 7953 0.957395 AGTGCAGAATTCACGGCCAG 60.957 55.000 8.44 0.00 37.31 4.85
4607 7978 3.006537 AGCACCACTTAGCTCGTTAAAGA 59.993 43.478 0.00 0.00 36.00 2.52
4608 7979 3.744426 GCACCACTTAGCTCGTTAAAGAA 59.256 43.478 0.00 0.00 0.00 2.52
4609 7980 4.392138 GCACCACTTAGCTCGTTAAAGAAT 59.608 41.667 0.00 0.00 0.00 2.40
4610 7981 5.446073 GCACCACTTAGCTCGTTAAAGAATC 60.446 44.000 0.00 0.00 0.00 2.52
4611 7982 5.869888 CACCACTTAGCTCGTTAAAGAATCT 59.130 40.000 0.00 0.00 0.00 2.40
4612 7983 5.869888 ACCACTTAGCTCGTTAAAGAATCTG 59.130 40.000 0.00 0.00 0.00 2.90
4613 7984 6.100004 CCACTTAGCTCGTTAAAGAATCTGA 58.900 40.000 0.00 0.00 0.00 3.27
4614 7985 6.590292 CCACTTAGCTCGTTAAAGAATCTGAA 59.410 38.462 0.00 0.00 0.00 3.02
4615 7986 7.201478 CCACTTAGCTCGTTAAAGAATCTGAAG 60.201 40.741 0.00 0.00 0.00 3.02
4616 7987 7.329717 CACTTAGCTCGTTAAAGAATCTGAAGT 59.670 37.037 0.00 0.00 0.00 3.01
4617 7988 7.329717 ACTTAGCTCGTTAAAGAATCTGAAGTG 59.670 37.037 0.00 0.00 0.00 3.16
4618 7989 5.542779 AGCTCGTTAAAGAATCTGAAGTGT 58.457 37.500 0.00 0.00 0.00 3.55
4619 7990 5.992217 AGCTCGTTAAAGAATCTGAAGTGTT 59.008 36.000 0.00 0.00 0.00 3.32
4620 7991 7.152645 AGCTCGTTAAAGAATCTGAAGTGTTA 58.847 34.615 0.00 0.00 0.00 2.41
4621 7992 7.819900 AGCTCGTTAAAGAATCTGAAGTGTTAT 59.180 33.333 0.00 0.00 0.00 1.89
4622 7993 7.900352 GCTCGTTAAAGAATCTGAAGTGTTATG 59.100 37.037 0.00 0.00 0.00 1.90
4623 7994 8.827177 TCGTTAAAGAATCTGAAGTGTTATGT 57.173 30.769 0.00 0.00 0.00 2.29
4624 7995 8.708742 TCGTTAAAGAATCTGAAGTGTTATGTG 58.291 33.333 0.00 0.00 0.00 3.21
4625 7996 7.957484 CGTTAAAGAATCTGAAGTGTTATGTGG 59.043 37.037 0.00 0.00 0.00 4.17
4626 7997 6.824305 AAAGAATCTGAAGTGTTATGTGGG 57.176 37.500 0.00 0.00 0.00 4.61
4627 7998 4.848357 AGAATCTGAAGTGTTATGTGGGG 58.152 43.478 0.00 0.00 0.00 4.96
4628 7999 4.536090 AGAATCTGAAGTGTTATGTGGGGA 59.464 41.667 0.00 0.00 0.00 4.81
4629 8000 3.981071 TCTGAAGTGTTATGTGGGGAG 57.019 47.619 0.00 0.00 0.00 4.30
4630 8001 3.516586 TCTGAAGTGTTATGTGGGGAGA 58.483 45.455 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.542130 AGTCAAGCTTTACAAACTTTGACAAAG 59.458 33.333 23.41 23.41 44.10 2.77
5 6 7.375053 AGTCAAGCTTTACAAACTTTGACAAA 58.625 30.769 13.07 0.00 30.59 2.83
6 7 6.919721 AGTCAAGCTTTACAAACTTTGACAA 58.080 32.000 13.07 0.00 30.59 3.18
7 8 6.509418 AGTCAAGCTTTACAAACTTTGACA 57.491 33.333 13.07 0.00 30.59 3.58
8 9 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
11 12 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
12 13 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
13 14 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
14 15 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
15 16 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
16 17 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
17 18 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
30 31 6.296026 ACTCTGTGTATTAGCTTTGGTCAAA 58.704 36.000 0.00 0.00 0.00 2.69
31 32 5.865085 ACTCTGTGTATTAGCTTTGGTCAA 58.135 37.500 0.00 0.00 0.00 3.18
32 33 5.483685 ACTCTGTGTATTAGCTTTGGTCA 57.516 39.130 0.00 0.00 0.00 4.02
33 34 7.900782 TTTACTCTGTGTATTAGCTTTGGTC 57.099 36.000 0.00 0.00 0.00 4.02
34 35 9.953565 TTATTTACTCTGTGTATTAGCTTTGGT 57.046 29.630 0.00 0.00 0.00 3.67
60 61 6.568795 TCCTACTTAGTACTCCCTCCTTTTT 58.431 40.000 0.00 0.00 0.00 1.94
61 62 6.163110 TCCTACTTAGTACTCCCTCCTTTT 57.837 41.667 0.00 0.00 0.00 2.27
62 63 5.810456 TCCTACTTAGTACTCCCTCCTTT 57.190 43.478 0.00 0.00 0.00 3.11
63 64 5.810456 TTCCTACTTAGTACTCCCTCCTT 57.190 43.478 0.00 0.00 0.00 3.36
64 65 5.495436 TCTTTCCTACTTAGTACTCCCTCCT 59.505 44.000 0.00 0.00 0.00 3.69
65 66 5.764432 TCTTTCCTACTTAGTACTCCCTCC 58.236 45.833 0.00 0.00 0.00 4.30
66 67 7.292319 AGATCTTTCCTACTTAGTACTCCCTC 58.708 42.308 0.00 0.00 0.00 4.30
67 68 7.129816 AGAGATCTTTCCTACTTAGTACTCCCT 59.870 40.741 0.00 0.00 0.00 4.20
68 69 7.292319 AGAGATCTTTCCTACTTAGTACTCCC 58.708 42.308 0.00 0.00 0.00 4.30
81 82 9.653516 TTGACATTAGAGATAGAGATCTTTCCT 57.346 33.333 0.00 0.00 42.80 3.36
98 99 9.784680 CCAGATTCATTTCTCTTTTGACATTAG 57.215 33.333 0.00 0.00 0.00 1.73
121 122 3.242870 GCAGAAAATAGCGGTGATTCCAG 60.243 47.826 0.00 0.00 35.57 3.86
123 124 2.945668 AGCAGAAAATAGCGGTGATTCC 59.054 45.455 0.00 0.00 35.48 3.01
142 143 2.362397 TGTCCATCGAGAATCAGGTAGC 59.638 50.000 0.00 0.00 33.17 3.58
144 145 2.357952 CGTGTCCATCGAGAATCAGGTA 59.642 50.000 0.00 0.00 33.17 3.08
201 202 3.127533 GTGCGTGGGTCCATCTGC 61.128 66.667 0.00 0.00 0.00 4.26
297 300 3.759618 ACGAGCAAGTCTATATAGGGAGC 59.240 47.826 9.89 9.01 0.00 4.70
543 593 2.622903 GATCACGAATCGGCCGACCA 62.623 60.000 33.75 9.28 34.57 4.02
586 636 2.654912 GAACCACGCGGACTGAACG 61.655 63.158 12.47 0.00 35.59 3.95
595 645 2.047274 ATCCACCAGAACCACGCG 60.047 61.111 3.53 3.53 0.00 6.01
619 669 2.721603 GGACGATGAATGAGATCGAACG 59.278 50.000 9.00 0.00 44.46 3.95
814 864 4.778143 AACCAGATCCGCCGCACC 62.778 66.667 0.00 0.00 0.00 5.01
819 869 3.512516 GCAGCAACCAGATCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
902 952 9.477484 CACAGGCTCGTTATAAGAATTAGTATT 57.523 33.333 0.00 0.00 31.76 1.89
903 953 8.639761 ACACAGGCTCGTTATAAGAATTAGTAT 58.360 33.333 0.00 0.00 31.76 2.12
906 956 7.168302 CAGACACAGGCTCGTTATAAGAATTAG 59.832 40.741 0.00 0.00 31.76 1.73
963 1015 5.732185 GCTGAAACCAAACGAAACAAAATTG 59.268 36.000 0.00 0.00 0.00 2.32
1170 1222 7.810658 AGATAAACAACATGCTGTACAGAAAG 58.189 34.615 27.08 15.94 0.00 2.62
1217 1277 4.080919 AGCTGCCACAACATATTGAGACTA 60.081 41.667 0.00 0.00 39.30 2.59
1218 1278 3.012518 GCTGCCACAACATATTGAGACT 58.987 45.455 0.00 0.00 39.30 3.24
1248 1308 0.373370 CATTACATGCACACGGTCCG 59.627 55.000 10.48 10.48 0.00 4.79
1268 1328 3.508845 ACTTGCCTACCATGAAACACT 57.491 42.857 0.00 0.00 0.00 3.55
1274 1334 3.451178 GGTCTCTAACTTGCCTACCATGA 59.549 47.826 0.00 0.00 0.00 3.07
1282 1342 5.392057 GCACTAAAATGGTCTCTAACTTGCC 60.392 44.000 0.00 0.00 0.00 4.52
1298 1359 3.242936 GCAAGACCGTTTCTGCACTAAAA 60.243 43.478 0.00 0.00 33.46 1.52
1308 1369 1.172812 AAGGCAGGCAAGACCGTTTC 61.173 55.000 0.00 0.00 46.52 2.78
1310 1371 0.321653 CTAAGGCAGGCAAGACCGTT 60.322 55.000 0.00 0.00 46.52 4.44
1312 1373 1.450312 CCTAAGGCAGGCAAGACCG 60.450 63.158 0.00 0.00 46.52 4.79
1350 1411 9.102757 TGATCAGCTTCAAGTAATCTTCATTAC 57.897 33.333 0.00 0.00 43.42 1.89
1351 1412 9.102757 GTGATCAGCTTCAAGTAATCTTCATTA 57.897 33.333 0.00 0.00 0.00 1.90
1361 1422 4.022329 TCAACTCGTGATCAGCTTCAAGTA 60.022 41.667 0.00 0.00 0.00 2.24
1432 1493 5.552807 CACGTGAAGTTCGTTTACAGAAAA 58.447 37.500 10.90 0.00 39.55 2.29
1443 1504 0.586319 AACATGGCACGTGAAGTTCG 59.414 50.000 22.23 4.13 0.00 3.95
1551 1618 4.610945 ACAATTAGCAGACAACTTGCAAC 58.389 39.130 0.00 0.00 0.00 4.17
1584 1651 6.016024 AGCTCAATTATCAAACTGAACTTGCA 60.016 34.615 0.00 0.00 0.00 4.08
1585 1652 6.385033 AGCTCAATTATCAAACTGAACTTGC 58.615 36.000 0.00 0.00 0.00 4.01
1636 1703 7.940636 TGTGATCACAATTACAGTGCAGACAC 61.941 42.308 26.02 0.00 41.93 3.67
1640 1707 4.715896 GTGTGATCACAATTACAGTGCAG 58.284 43.478 29.42 0.00 43.77 4.41
1721 1793 6.933521 GCCTTAATCTGTGTGATCACTATGAT 59.066 38.462 25.55 20.21 44.14 2.45
1732 1804 2.412870 TGACACGCCTTAATCTGTGTG 58.587 47.619 10.37 10.32 44.93 3.82
1734 1806 1.394917 GCTGACACGCCTTAATCTGTG 59.605 52.381 0.00 0.00 38.28 3.66
1758 1831 6.338214 AGTGTTATCGCTCATCACTATGAT 57.662 37.500 0.00 0.00 41.29 2.45
1769 1842 3.179830 ACATGAACGAGTGTTATCGCTC 58.820 45.455 0.00 4.55 46.60 5.03
1850 2122 5.484715 CCACTTTGGAATGATTCAGCATTT 58.515 37.500 7.56 0.00 40.96 2.32
1853 2125 2.231964 GCCACTTTGGAATGATTCAGCA 59.768 45.455 7.56 0.00 40.96 4.41
1886 2904 3.802948 ACTCTTACAGGAGGTTATGCG 57.197 47.619 0.00 0.00 37.63 4.73
1898 2916 4.585955 GACACCAGTCAGAACTCTTACA 57.414 45.455 0.00 0.00 44.34 2.41
2031 4685 6.647067 GTGATGTCAAAGTAGCAGAGTAAAGT 59.353 38.462 0.00 0.00 0.00 2.66
2092 4856 6.038271 AGTTTCGACATTAAACCCTGCATATC 59.962 38.462 0.00 0.00 37.51 1.63
2095 4859 4.079253 AGTTTCGACATTAAACCCTGCAT 58.921 39.130 0.00 0.00 37.51 3.96
2256 5023 1.678101 GCATGCCCCTCAGTGTAATTC 59.322 52.381 6.36 0.00 0.00 2.17
2270 5037 2.004733 GCAATTCAAAGAAGGCATGCC 58.995 47.619 30.12 30.12 0.00 4.40
2325 5098 1.539827 GGGAGTACAACACAATGGCAC 59.460 52.381 0.00 0.00 0.00 5.01
2332 5105 0.963962 GACGGAGGGAGTACAACACA 59.036 55.000 0.00 0.00 0.00 3.72
2338 5111 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2339 5112 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
2340 5113 1.123246 TTTTTCCGGACGGAGGGAGT 61.123 55.000 13.64 0.00 46.06 3.85
2341 5114 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
2342 5115 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
2343 5116 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.000 13.64 0.00 46.06 4.30
2344 5117 0.872388 CAAGTTTTTCCGGACGGAGG 59.128 55.000 13.64 0.00 46.06 4.30
2345 5118 1.529865 GACAAGTTTTTCCGGACGGAG 59.470 52.381 13.64 3.15 46.06 4.63
2346 5119 1.585297 GACAAGTTTTTCCGGACGGA 58.415 50.000 1.83 9.76 43.52 4.69
2347 5120 0.589708 GGACAAGTTTTTCCGGACGG 59.410 55.000 1.83 3.96 0.00 4.79
2348 5121 0.589708 GGGACAAGTTTTTCCGGACG 59.410 55.000 1.83 0.00 32.00 4.79
2349 5122 1.878088 GAGGGACAAGTTTTTCCGGAC 59.122 52.381 1.83 0.00 32.00 4.79
2350 5123 1.491332 TGAGGGACAAGTTTTTCCGGA 59.509 47.619 0.00 0.00 32.00 5.14
2351 5124 1.975660 TGAGGGACAAGTTTTTCCGG 58.024 50.000 0.00 0.00 32.00 5.14
2352 5125 4.298332 CATTTGAGGGACAAGTTTTTCCG 58.702 43.478 0.00 0.00 39.77 4.30
2353 5126 4.343814 TCCATTTGAGGGACAAGTTTTTCC 59.656 41.667 0.00 0.00 39.77 3.13
2354 5127 5.529581 TCCATTTGAGGGACAAGTTTTTC 57.470 39.130 0.00 0.00 39.77 2.29
2355 5128 5.366477 ACATCCATTTGAGGGACAAGTTTTT 59.634 36.000 0.00 0.00 39.77 1.94
2356 5129 4.901250 ACATCCATTTGAGGGACAAGTTTT 59.099 37.500 0.00 0.00 39.77 2.43
2357 5130 4.482990 ACATCCATTTGAGGGACAAGTTT 58.517 39.130 0.00 0.00 39.77 2.66
2358 5131 4.118168 ACATCCATTTGAGGGACAAGTT 57.882 40.909 0.00 0.00 39.77 2.66
2359 5132 3.814504 ACATCCATTTGAGGGACAAGT 57.185 42.857 0.00 0.00 39.77 3.16
2360 5133 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2361 5134 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2362 5135 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2363 5136 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2364 5137 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2365 5138 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2366 5139 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2367 5140 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
2368 5141 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
2369 5142 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
2370 5143 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
2371 5144 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
2372 5145 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
2373 5146 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
2374 5147 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
2386 5159 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
2387 5160 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
2388 5161 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
2389 5162 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
2390 5163 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2391 5164 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2392 5165 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
2393 5166 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
2394 5167 7.839680 TCTCAAATGGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
2395 5168 6.737720 TCTCAAATGGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
2396 5169 7.280876 TGTTTCTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
2397 5170 7.337938 TGTTTCTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
2398 5171 7.792374 TGTTTCTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
2399 5172 8.341173 GCTTGTTTCTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
2400 5173 8.049117 AGCTTGTTTCTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
2401 5174 6.888632 AGCTTGTTTCTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
2402 5175 7.093322 AGCTTGTTTCTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
2403 5176 7.318141 CAAGCTTGTTTCTCAAATGGATGTAT 58.682 34.615 18.65 0.00 35.48 2.29
2404 5177 6.294675 CCAAGCTTGTTTCTCAAATGGATGTA 60.295 38.462 24.35 0.00 36.92 2.29
2405 5178 5.510179 CCAAGCTTGTTTCTCAAATGGATGT 60.510 40.000 24.35 0.00 36.92 3.06
2411 5184 3.960102 TGTCCCAAGCTTGTTTCTCAAAT 59.040 39.130 24.35 0.00 35.48 2.32
2416 5189 1.683385 GCTTGTCCCAAGCTTGTTTCT 59.317 47.619 24.35 0.00 40.01 2.52
2424 5197 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
2425 5198 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
2426 5199 1.679153 GTCCGAAAAAGCTTGTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
2427 5200 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
2428 5201 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
2429 5202 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2430 5203 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
2431 5204 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
2434 5207 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
2435 5208 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2436 5209 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2437 5210 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2438 5211 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2440 5213 1.108776 CAATACTCCCTCCGTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
2441 5214 0.256752 TCAATACTCCCTCCGTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
2442 5215 1.108776 TTCAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
2443 5216 5.485209 AATATTCAATACTCCCTCCGTCC 57.515 43.478 0.00 0.00 0.00 4.79
2446 5219 8.754080 AGATAGAAATATTCAATACTCCCTCCG 58.246 37.037 0.00 0.00 0.00 4.63
2504 5291 5.344128 GCAAGTGCACAAAACATTAGATGAG 59.656 40.000 21.04 0.00 41.59 2.90
2519 5306 3.686241 TGATCTGTATTGAGCAAGTGCAC 59.314 43.478 9.40 9.40 45.16 4.57
2665 5454 9.237187 TGTGTTGACATTGCTTTATTTCCTATA 57.763 29.630 0.00 0.00 0.00 1.31
2667 5456 7.517614 TGTGTTGACATTGCTTTATTTCCTA 57.482 32.000 0.00 0.00 0.00 2.94
2834 5904 4.232221 CAAGGCAGCATCTTAAAACAGTG 58.768 43.478 0.00 0.00 0.00 3.66
2863 5933 7.519649 GCCACTGAAATGATGATAAGAGCTAAC 60.520 40.741 0.00 0.00 0.00 2.34
2888 5958 4.349663 TTGCCGTCATTAATAAGTGTGC 57.650 40.909 0.00 0.00 0.00 4.57
2893 5963 5.173774 ACAGCATTGCCGTCATTAATAAG 57.826 39.130 4.70 0.00 0.00 1.73
3088 6161 9.904198 TGGAGATCAATCATAAAACTATTGTCA 57.096 29.630 0.00 0.00 33.35 3.58
3096 6169 9.438291 CGTGTTATTGGAGATCAATCATAAAAC 57.562 33.333 0.00 0.00 44.32 2.43
3102 6175 5.977635 AGTCGTGTTATTGGAGATCAATCA 58.022 37.500 0.00 0.00 44.32 2.57
3117 6190 9.298774 GCTGTACTTATTTAAGATAGTCGTGTT 57.701 33.333 4.40 0.00 37.08 3.32
3118 6191 8.684520 AGCTGTACTTATTTAAGATAGTCGTGT 58.315 33.333 4.40 0.00 37.08 4.49
3131 6204 9.810545 GAACAGAGAGAATAGCTGTACTTATTT 57.189 33.333 0.00 0.00 41.65 1.40
3132 6205 8.417884 GGAACAGAGAGAATAGCTGTACTTATT 58.582 37.037 0.00 0.00 41.65 1.40
3133 6206 7.782644 AGGAACAGAGAGAATAGCTGTACTTAT 59.217 37.037 0.00 0.00 41.65 1.73
3134 6207 7.120051 AGGAACAGAGAGAATAGCTGTACTTA 58.880 38.462 0.00 0.00 41.65 2.24
3135 6208 5.955355 AGGAACAGAGAGAATAGCTGTACTT 59.045 40.000 0.00 0.00 41.65 2.24
3136 6209 5.515106 AGGAACAGAGAGAATAGCTGTACT 58.485 41.667 0.00 0.00 41.65 2.73
3137 6210 5.845391 AGGAACAGAGAGAATAGCTGTAC 57.155 43.478 0.00 0.00 41.65 2.90
3138 6211 7.956328 TTTAGGAACAGAGAGAATAGCTGTA 57.044 36.000 0.00 0.00 41.65 2.74
3139 6212 6.859112 TTTAGGAACAGAGAGAATAGCTGT 57.141 37.500 0.00 0.00 44.15 4.40
3182 6255 5.784906 TGCTCCATATGTAGTCCATATTGGA 59.215 40.000 1.24 0.00 45.98 3.53
3183 6256 6.053632 TGCTCCATATGTAGTCCATATTGG 57.946 41.667 1.24 0.00 42.87 3.16
3184 6257 7.984422 TTTGCTCCATATGTAGTCCATATTG 57.016 36.000 1.24 0.00 42.87 1.90
3187 6260 9.725019 CTTATTTTGCTCCATATGTAGTCCATA 57.275 33.333 1.24 0.00 40.27 2.74
3188 6261 8.220559 ACTTATTTTGCTCCATATGTAGTCCAT 58.779 33.333 1.24 0.00 37.58 3.41
3189 6262 7.498900 CACTTATTTTGCTCCATATGTAGTCCA 59.501 37.037 1.24 0.00 0.00 4.02
3190 6263 7.715249 TCACTTATTTTGCTCCATATGTAGTCC 59.285 37.037 1.24 0.00 0.00 3.85
3191 6264 8.662781 TCACTTATTTTGCTCCATATGTAGTC 57.337 34.615 1.24 0.00 0.00 2.59
3192 6265 9.632638 ATTCACTTATTTTGCTCCATATGTAGT 57.367 29.630 1.24 0.00 0.00 2.73
3194 6267 9.851686 AGATTCACTTATTTTGCTCCATATGTA 57.148 29.630 1.24 0.00 0.00 2.29
3195 6268 8.757982 AGATTCACTTATTTTGCTCCATATGT 57.242 30.769 1.24 0.00 0.00 2.29
3197 6270 9.851686 TGTAGATTCACTTATTTTGCTCCATAT 57.148 29.630 0.00 0.00 0.00 1.78
3198 6271 9.109393 GTGTAGATTCACTTATTTTGCTCCATA 57.891 33.333 0.00 0.00 35.68 2.74
3199 6272 7.831193 AGTGTAGATTCACTTATTTTGCTCCAT 59.169 33.333 0.00 0.00 44.92 3.41
3200 6273 7.168219 AGTGTAGATTCACTTATTTTGCTCCA 58.832 34.615 0.00 0.00 44.92 3.86
3201 6274 7.550906 AGAGTGTAGATTCACTTATTTTGCTCC 59.449 37.037 0.98 0.00 46.81 4.70
3202 6275 8.485976 AGAGTGTAGATTCACTTATTTTGCTC 57.514 34.615 0.98 0.00 46.81 4.26
3203 6276 9.593134 CTAGAGTGTAGATTCACTTATTTTGCT 57.407 33.333 0.98 0.00 46.81 3.91
3204 6277 9.587772 TCTAGAGTGTAGATTCACTTATTTTGC 57.412 33.333 0.00 0.00 46.81 3.68
3209 6282 9.263538 CGTAGTCTAGAGTGTAGATTCACTTAT 57.736 37.037 10.51 0.00 46.81 1.73
3210 6283 8.256605 ACGTAGTCTAGAGTGTAGATTCACTTA 58.743 37.037 10.51 0.00 42.93 2.24
3211 6284 7.104939 ACGTAGTCTAGAGTGTAGATTCACTT 58.895 38.462 10.51 0.00 42.93 3.16
3212 6285 6.642430 ACGTAGTCTAGAGTGTAGATTCACT 58.358 40.000 10.51 0.00 44.85 3.41
3213 6286 6.907206 ACGTAGTCTAGAGTGTAGATTCAC 57.093 41.667 10.51 0.00 29.74 3.18
3232 6305 9.822185 ACATACGGATGTACATATATAGACGTA 57.178 33.333 12.79 13.95 44.77 3.57
3233 6306 8.728337 ACATACGGATGTACATATATAGACGT 57.272 34.615 12.79 12.43 44.77 4.34
3239 6312 9.642343 ATGGACTACATACGGATGTACATATAT 57.358 33.333 16.71 5.39 44.77 0.86
3241 6314 7.956328 ATGGACTACATACGGATGTACATAT 57.044 36.000 16.71 6.36 44.77 1.78
3242 6315 9.470399 AATATGGACTACATACGGATGTACATA 57.530 33.333 22.25 22.25 44.77 2.29
3243 6316 7.956328 ATATGGACTACATACGGATGTACAT 57.044 36.000 16.71 18.85 44.77 2.29
3244 6317 7.449086 TCAATATGGACTACATACGGATGTACA 59.551 37.037 16.71 13.43 44.77 2.90
3245 6318 7.823665 TCAATATGGACTACATACGGATGTAC 58.176 38.462 16.71 8.04 44.77 2.90
3246 6319 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
3248 6321 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
3249 6322 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
3250 6323 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3251 6324 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3259 6332 9.606631 GTCTTTGTAGAGATTTCAATATGGACT 57.393 33.333 0.00 0.00 0.00 3.85
3260 6333 9.606631 AGTCTTTGTAGAGATTTCAATATGGAC 57.393 33.333 0.00 0.00 0.00 4.02
3265 6338 9.778741 ACACAAGTCTTTGTAGAGATTTCAATA 57.221 29.630 0.00 0.00 45.53 1.90
3266 6339 8.682936 ACACAAGTCTTTGTAGAGATTTCAAT 57.317 30.769 0.00 0.00 45.53 2.57
3267 6340 8.506168 AACACAAGTCTTTGTAGAGATTTCAA 57.494 30.769 0.00 0.00 45.53 2.69
3268 6341 8.506168 AAACACAAGTCTTTGTAGAGATTTCA 57.494 30.769 0.00 0.00 45.53 2.69
3270 6343 9.057089 CCTAAACACAAGTCTTTGTAGAGATTT 57.943 33.333 0.00 0.00 45.53 2.17
3271 6344 8.429641 TCCTAAACACAAGTCTTTGTAGAGATT 58.570 33.333 0.00 0.00 45.53 2.40
3272 6345 7.963532 TCCTAAACACAAGTCTTTGTAGAGAT 58.036 34.615 0.00 0.00 45.53 2.75
3273 6346 7.356089 TCCTAAACACAAGTCTTTGTAGAGA 57.644 36.000 0.00 0.00 45.53 3.10
3274 6347 7.306632 CGTTCCTAAACACAAGTCTTTGTAGAG 60.307 40.741 0.00 3.29 45.53 2.43
3275 6348 6.477688 CGTTCCTAAACACAAGTCTTTGTAGA 59.522 38.462 0.00 0.00 45.53 2.59
3276 6349 6.292703 CCGTTCCTAAACACAAGTCTTTGTAG 60.293 42.308 0.00 0.00 45.53 2.74
3277 6350 5.524646 CCGTTCCTAAACACAAGTCTTTGTA 59.475 40.000 0.00 0.00 45.53 2.41
3279 6352 4.573201 TCCGTTCCTAAACACAAGTCTTTG 59.427 41.667 0.00 0.00 40.24 2.77
3280 6353 4.773013 TCCGTTCCTAAACACAAGTCTTT 58.227 39.130 0.00 0.00 34.93 2.52
3281 6354 4.377897 CTCCGTTCCTAAACACAAGTCTT 58.622 43.478 0.00 0.00 34.93 3.01
3282 6355 3.244112 CCTCCGTTCCTAAACACAAGTCT 60.244 47.826 0.00 0.00 34.93 3.24
3283 6356 3.064931 CCTCCGTTCCTAAACACAAGTC 58.935 50.000 0.00 0.00 34.93 3.01
3284 6357 2.224450 CCCTCCGTTCCTAAACACAAGT 60.224 50.000 0.00 0.00 34.93 3.16
3285 6358 2.038033 TCCCTCCGTTCCTAAACACAAG 59.962 50.000 0.00 0.00 34.93 3.16
3286 6359 2.038033 CTCCCTCCGTTCCTAAACACAA 59.962 50.000 0.00 0.00 34.93 3.33
3287 6360 1.621814 CTCCCTCCGTTCCTAAACACA 59.378 52.381 0.00 0.00 34.93 3.72
3288 6361 1.622312 ACTCCCTCCGTTCCTAAACAC 59.378 52.381 0.00 0.00 34.93 3.32
3289 6362 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
3290 6363 6.416631 AATATACTCCCTCCGTTCCTAAAC 57.583 41.667 0.00 0.00 0.00 2.01
3291 6364 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
3292 6365 8.551682 TTAAAATATACTCCCTCCGTTCCTAA 57.448 34.615 0.00 0.00 0.00 2.69
3293 6366 8.731591 ATTAAAATATACTCCCTCCGTTCCTA 57.268 34.615 0.00 0.00 0.00 2.94
3294 6367 7.628501 ATTAAAATATACTCCCTCCGTTCCT 57.371 36.000 0.00 0.00 0.00 3.36
3299 6372 9.998106 CCCATATATTAAAATATACTCCCTCCG 57.002 37.037 4.88 0.00 36.85 4.63
3315 6388 9.249053 TCAAGTTTTGTTGCTTCCCATATATTA 57.751 29.630 0.00 0.00 0.00 0.98
3316 6389 8.133024 TCAAGTTTTGTTGCTTCCCATATATT 57.867 30.769 0.00 0.00 0.00 1.28
3319 6392 6.418057 TTCAAGTTTTGTTGCTTCCCATAT 57.582 33.333 0.00 0.00 0.00 1.78
3345 6418 8.812972 ACCTCAAGACAAGACTATTATTACACA 58.187 33.333 0.00 0.00 0.00 3.72
3347 6420 8.258007 CCACCTCAAGACAAGACTATTATTACA 58.742 37.037 0.00 0.00 0.00 2.41
3348 6421 8.258708 ACCACCTCAAGACAAGACTATTATTAC 58.741 37.037 0.00 0.00 0.00 1.89
3350 6423 7.038302 TCACCACCTCAAGACAAGACTATTATT 60.038 37.037 0.00 0.00 0.00 1.40
3352 6425 5.778241 TCACCACCTCAAGACAAGACTATTA 59.222 40.000 0.00 0.00 0.00 0.98
3353 6426 4.593206 TCACCACCTCAAGACAAGACTATT 59.407 41.667 0.00 0.00 0.00 1.73
3358 6437 3.901222 TGTATCACCACCTCAAGACAAGA 59.099 43.478 0.00 0.00 0.00 3.02
3359 6438 3.997021 GTGTATCACCACCTCAAGACAAG 59.003 47.826 0.00 0.00 0.00 3.16
3371 6450 6.893554 ACAATAGTAGTACCAGTGTATCACCA 59.106 38.462 0.00 0.00 34.49 4.17
3372 6451 7.344095 ACAATAGTAGTACCAGTGTATCACC 57.656 40.000 0.00 0.00 34.49 4.02
3373 6452 9.727627 GTAACAATAGTAGTACCAGTGTATCAC 57.272 37.037 2.32 0.00 34.10 3.06
3374 6453 9.465199 TGTAACAATAGTAGTACCAGTGTATCA 57.535 33.333 2.32 3.14 0.00 2.15
3375 6454 9.727627 GTGTAACAATAGTAGTACCAGTGTATC 57.272 37.037 2.32 0.89 36.32 2.24
3409 6488 6.108687 TGAGTACTTGGCTTGTGAATAGATG 58.891 40.000 0.00 0.00 0.00 2.90
3410 6489 6.299805 TGAGTACTTGGCTTGTGAATAGAT 57.700 37.500 0.00 0.00 0.00 1.98
3411 6490 5.738619 TGAGTACTTGGCTTGTGAATAGA 57.261 39.130 0.00 0.00 0.00 1.98
3412 6491 6.992063 AATGAGTACTTGGCTTGTGAATAG 57.008 37.500 0.00 0.00 0.00 1.73
3414 6493 6.040842 ACAAAATGAGTACTTGGCTTGTGAAT 59.959 34.615 0.00 0.00 0.00 2.57
3415 6494 5.359576 ACAAAATGAGTACTTGGCTTGTGAA 59.640 36.000 0.00 0.00 0.00 3.18
3416 6495 4.887071 ACAAAATGAGTACTTGGCTTGTGA 59.113 37.500 0.00 0.00 0.00 3.58
3417 6496 5.186996 ACAAAATGAGTACTTGGCTTGTG 57.813 39.130 0.00 0.00 0.00 3.33
3418 6497 5.240844 GGTACAAAATGAGTACTTGGCTTGT 59.759 40.000 14.71 14.71 41.16 3.16
3423 6502 4.153475 CGGTGGTACAAAATGAGTACTTGG 59.847 45.833 0.00 0.00 44.16 3.61
3424 6503 4.992319 TCGGTGGTACAAAATGAGTACTTG 59.008 41.667 0.00 0.00 44.16 3.16
3427 6506 4.152938 GGTTCGGTGGTACAAAATGAGTAC 59.847 45.833 0.00 0.00 44.16 2.73
3437 6516 4.354893 AAAACATAGGTTCGGTGGTACA 57.645 40.909 0.00 0.00 35.82 2.90
3439 6518 5.430007 CCATAAAACATAGGTTCGGTGGTA 58.570 41.667 0.00 0.00 35.82 3.25
3441 6520 3.066203 GCCATAAAACATAGGTTCGGTGG 59.934 47.826 11.26 11.26 35.82 4.61
3444 6523 3.551846 AGGCCATAAAACATAGGTTCGG 58.448 45.455 5.01 0.00 35.82 4.30
3446 6525 7.170393 AGAAAAGGCCATAAAACATAGGTTC 57.830 36.000 5.01 0.00 35.82 3.62
3450 6529 9.956720 CTTCATAGAAAAGGCCATAAAACATAG 57.043 33.333 5.01 0.00 0.00 2.23
3454 6795 8.056407 AGTCTTCATAGAAAAGGCCATAAAAC 57.944 34.615 5.01 0.00 30.65 2.43
3473 6814 8.089115 AGCAAGTTACTGTAAATTGAGTCTTC 57.911 34.615 32.54 19.12 44.01 2.87
3475 6816 7.386299 CAGAGCAAGTTACTGTAAATTGAGTCT 59.614 37.037 32.54 28.18 44.01 3.24
3488 6829 8.345565 CAAAACATAAGTTCAGAGCAAGTTACT 58.654 33.333 0.00 0.00 36.84 2.24
3489 6830 7.113544 GCAAAACATAAGTTCAGAGCAAGTTAC 59.886 37.037 0.00 0.00 36.84 2.50
3492 6833 5.300286 AGCAAAACATAAGTTCAGAGCAAGT 59.700 36.000 0.00 0.00 36.84 3.16
3493 6834 5.766222 AGCAAAACATAAGTTCAGAGCAAG 58.234 37.500 0.00 0.00 36.84 4.01
3494 6835 5.772825 AGCAAAACATAAGTTCAGAGCAA 57.227 34.783 0.00 0.00 36.84 3.91
3499 6840 8.856490 AAACAAGTAGCAAAACATAAGTTCAG 57.144 30.769 0.00 0.00 36.84 3.02
3503 6844 7.068226 ACCTGAAACAAGTAGCAAAACATAAGT 59.932 33.333 0.00 0.00 0.00 2.24
3515 6856 6.037786 TCTGGATGTACCTGAAACAAGTAG 57.962 41.667 0.00 0.00 42.27 2.57
3518 6859 3.686726 GCTCTGGATGTACCTGAAACAAG 59.313 47.826 0.00 0.00 44.02 3.16
3520 6861 2.637382 TGCTCTGGATGTACCTGAAACA 59.363 45.455 0.00 0.00 44.02 2.83
3521 6862 3.003480 GTGCTCTGGATGTACCTGAAAC 58.997 50.000 0.00 0.00 44.02 2.78
3558 6899 3.027675 GCCCTCGTACAACCCCTCC 62.028 68.421 0.00 0.00 0.00 4.30
3713 7065 5.336690 GGGAAATCATGTGTGTTTGCACTAT 60.337 40.000 0.00 0.00 45.44 2.12
3796 7148 4.630644 AGAGAAAGATGCAAACTGGAGA 57.369 40.909 0.00 0.00 0.00 3.71
3821 7173 5.572126 CGGAGTAGAACTAAGTAGCAACAAC 59.428 44.000 0.00 0.00 0.00 3.32
3838 7190 5.162075 CCAAAGAGAGTAAACACGGAGTAG 58.838 45.833 0.00 0.00 41.61 2.57
3844 7196 4.369182 AGACACCAAAGAGAGTAAACACG 58.631 43.478 0.00 0.00 0.00 4.49
3847 7199 6.972901 CCAAAAAGACACCAAAGAGAGTAAAC 59.027 38.462 0.00 0.00 0.00 2.01
3851 7203 4.855340 TCCAAAAAGACACCAAAGAGAGT 58.145 39.130 0.00 0.00 0.00 3.24
3857 7209 5.428184 AACCAATCCAAAAAGACACCAAA 57.572 34.783 0.00 0.00 0.00 3.28
3862 7214 4.161189 TGCAGAAACCAATCCAAAAAGACA 59.839 37.500 0.00 0.00 0.00 3.41
3868 7220 5.452636 GGTTAGTTGCAGAAACCAATCCAAA 60.453 40.000 17.37 0.00 41.89 3.28
3869 7221 4.038642 GGTTAGTTGCAGAAACCAATCCAA 59.961 41.667 17.37 0.00 41.89 3.53
3871 7223 3.365969 CGGTTAGTTGCAGAAACCAATCC 60.366 47.826 20.37 3.62 42.31 3.01
3893 7245 7.986085 ATATATCAGGAAATTACACACAGGC 57.014 36.000 0.00 0.00 0.00 4.85
3899 7251 9.944376 TCAAGCCTATATATCAGGAAATTACAC 57.056 33.333 7.35 0.00 34.91 2.90
4126 7478 5.297278 AGAGTACAGAGCGGACATAGTAAAG 59.703 44.000 0.00 0.00 0.00 1.85
4214 7566 4.437239 AGATAGCAATTCAGAAGACACGG 58.563 43.478 0.00 0.00 0.00 4.94
4263 7615 2.033550 CGTTGTTTCGGGATGGAAAACA 59.966 45.455 0.00 0.00 37.63 2.83
4264 7616 2.033675 ACGTTGTTTCGGGATGGAAAAC 59.966 45.455 0.00 0.00 37.63 2.43
4430 7799 1.002257 ACGCCTTCCACATGATGCA 60.002 52.632 0.00 0.00 0.00 3.96
4461 7830 3.741476 GAAACGCAGGCAGCCAGG 61.741 66.667 15.80 6.47 41.38 4.45
4465 7834 4.389576 CGTGGAAACGCAGGCAGC 62.390 66.667 0.00 0.00 42.37 5.25
4496 7865 4.994744 GCAATTGAACCAGGTGCC 57.005 55.556 10.34 0.00 0.00 5.01
4535 7905 9.905713 TCTAGCCTAAAATGACATAAATTGACT 57.094 29.630 0.00 0.00 0.00 3.41
4536 7906 9.937175 GTCTAGCCTAAAATGACATAAATTGAC 57.063 33.333 0.00 0.00 0.00 3.18
4559 7930 1.800805 CCGTGAATTCTGCACTGTCT 58.199 50.000 7.05 0.00 34.18 3.41
4564 7935 1.237285 ACTGGCCGTGAATTCTGCAC 61.237 55.000 7.05 0.00 0.00 4.57
4569 7940 1.130561 GTGCTTACTGGCCGTGAATTC 59.869 52.381 10.01 0.00 0.00 2.17
4577 7948 1.739067 CTAAGTGGTGCTTACTGGCC 58.261 55.000 0.00 0.00 38.57 5.36
4578 7949 1.087501 GCTAAGTGGTGCTTACTGGC 58.912 55.000 0.00 0.00 38.57 4.85
4582 7953 2.365408 ACGAGCTAAGTGGTGCTTAC 57.635 50.000 0.00 0.00 39.91 2.34
4607 7978 4.536090 TCTCCCCACATAACACTTCAGATT 59.464 41.667 0.00 0.00 0.00 2.40
4608 7979 4.104086 TCTCCCCACATAACACTTCAGAT 58.896 43.478 0.00 0.00 0.00 2.90
4609 7980 3.516586 TCTCCCCACATAACACTTCAGA 58.483 45.455 0.00 0.00 0.00 3.27
4610 7981 3.981071 TCTCCCCACATAACACTTCAG 57.019 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.