Multiple sequence alignment - TraesCS1A01G305800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G305800 chr1A 100.000 5873 0 0 1 5873 498162906 498168778 0.000000e+00 10846.0
1 TraesCS1A01G305800 chr1A 91.463 82 5 1 4384 4463 311077264 311077345 1.730000e-20 111.0
2 TraesCS1A01G305800 chr1B 94.687 4028 133 29 1 3977 540999537 541003534 0.000000e+00 6178.0
3 TraesCS1A01G305800 chr1B 93.790 1417 76 8 4458 5867 541003829 541005240 0.000000e+00 2119.0
4 TraesCS1A01G305800 chr1B 91.722 302 21 3 4080 4381 541003531 541003828 3.270000e-112 416.0
5 TraesCS1A01G305800 chr1B 90.361 83 4 3 4384 4464 392878983 392878903 8.050000e-19 106.0
6 TraesCS1A01G305800 chr1D 95.560 1847 51 9 2158 3977 403050401 403052243 0.000000e+00 2928.0
7 TraesCS1A01G305800 chr1D 90.087 2189 96 40 1 2149 403048244 403050351 0.000000e+00 2728.0
8 TraesCS1A01G305800 chr1D 93.404 1410 62 12 4458 5864 403052541 403053922 0.000000e+00 2060.0
9 TraesCS1A01G305800 chr1D 95.349 301 13 1 4080 4380 403052240 403052539 1.480000e-130 477.0
10 TraesCS1A01G305800 chr1D 95.370 108 5 0 3976 4083 465596804 465596911 7.820000e-39 172.0
11 TraesCS1A01G305800 chr1D 96.491 57 2 0 2208 2264 403050347 403050403 1.740000e-15 95.3
12 TraesCS1A01G305800 chr3D 80.101 397 70 6 3236 3624 443710792 443710397 2.680000e-73 287.0
13 TraesCS1A01G305800 chr3D 73.498 649 139 22 2334 2961 443711482 443710846 1.280000e-51 215.0
14 TraesCS1A01G305800 chr3D 92.982 114 8 0 3970 4083 388791373 388791486 3.640000e-37 167.0
15 TraesCS1A01G305800 chr3D 93.590 78 3 1 4384 4459 105151047 105151124 1.340000e-21 115.0
16 TraesCS1A01G305800 chr3D 92.308 78 4 1 4384 4459 105182932 105183009 6.220000e-20 110.0
17 TraesCS1A01G305800 chr3D 91.667 84 0 2 4384 4460 563133639 563133556 6.220000e-20 110.0
18 TraesCS1A01G305800 chr3B 79.899 398 69 7 3236 3624 581705672 581705277 1.250000e-71 281.0
19 TraesCS1A01G305800 chr3B 90.984 122 9 2 3971 4090 753999902 753999781 4.710000e-36 163.0
20 TraesCS1A01G305800 chr3B 93.750 80 2 2 4384 4460 828548736 828548657 3.720000e-22 117.0
21 TraesCS1A01G305800 chr3B 91.463 82 4 2 4384 4462 169261818 169261737 6.220000e-20 110.0
22 TraesCS1A01G305800 chr3A 84.729 203 31 0 3236 3438 584934343 584934141 2.770000e-48 204.0
23 TraesCS1A01G305800 chr3A 73.118 651 138 24 2334 2961 584935033 584934397 1.290000e-46 198.0
24 TraesCS1A01G305800 chr6B 95.690 116 5 0 3968 4083 506127975 506128090 2.790000e-43 187.0
25 TraesCS1A01G305800 chr6B 93.694 111 7 0 3973 4083 204159134 204159244 3.640000e-37 167.0
26 TraesCS1A01G305800 chr2A 96.296 108 4 0 3976 4083 449280138 449280031 1.680000e-40 178.0
27 TraesCS1A01G305800 chr6D 93.966 116 7 0 3968 4083 318149932 318149817 6.050000e-40 176.0
28 TraesCS1A01G305800 chr7D 95.413 109 4 1 3975 4083 60693372 60693479 7.820000e-39 172.0
29 TraesCS1A01G305800 chrUn 93.750 112 7 0 3976 4087 94181871 94181982 1.010000e-37 169.0
30 TraesCS1A01G305800 chr4D 91.667 84 2 2 4384 4462 134142504 134142421 1.730000e-20 111.0
31 TraesCS1A01G305800 chr5D 84.762 105 8 3 4367 4463 509559194 509559298 1.350000e-16 99.0
32 TraesCS1A01G305800 chr5A 89.831 59 6 0 5813 5871 660403916 660403974 6.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G305800 chr1A 498162906 498168778 5872 False 10846.000000 10846 100.000000 1 5873 1 chr1A.!!$F2 5872
1 TraesCS1A01G305800 chr1B 540999537 541005240 5703 False 2904.333333 6178 93.399667 1 5867 3 chr1B.!!$F1 5866
2 TraesCS1A01G305800 chr1D 403048244 403053922 5678 False 1657.660000 2928 94.178200 1 5864 5 chr1D.!!$F2 5863
3 TraesCS1A01G305800 chr3D 443710397 443711482 1085 True 251.000000 287 76.799500 2334 3624 2 chr3D.!!$R2 1290
4 TraesCS1A01G305800 chr3A 584934141 584935033 892 True 201.000000 204 78.923500 2334 3438 2 chr3A.!!$R1 1104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 562 0.615331 TGTCTCCTGTTCATCCCTGC 59.385 55.000 0.00 0.00 0.00 4.85 F
827 854 0.961019 TTTCTGGGACAAGTGCATGC 59.039 50.000 11.82 11.82 38.70 4.06 F
1198 1230 1.077625 AGACCGTCCAAGCTCCTCT 59.922 57.895 0.00 0.00 0.00 3.69 F
1628 1681 0.316204 GCACTTTGCTGCACTGGATT 59.684 50.000 0.00 0.00 40.96 3.01 F
2073 2126 1.098712 AGACTTGCGGTGCCGAAAAA 61.099 50.000 15.45 4.46 42.83 1.94 F
2802 2911 1.821753 TCTGCTTCTGCCTCTAGTGAC 59.178 52.381 0.00 0.00 38.71 3.67 F
3696 3841 3.412237 TTTCCCCAACGAGGAACTAAG 57.588 47.619 0.00 0.00 43.08 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1591 1.203441 TGGAGGAGCTTGGTGCAGAT 61.203 55.000 0.00 0.0 45.94 2.90 R
1628 1681 1.630369 ACCAGCAGCATCCAAAGAGTA 59.370 47.619 0.00 0.0 0.00 2.59 R
2577 2686 4.061596 GCATGTAAGGCTTCCTGATAGAC 58.938 47.826 1.30 0.0 42.67 2.59 R
3225 3362 6.064060 TGATATACATCCCTGAAGCCAAAAG 58.936 40.000 0.00 0.0 0.00 2.27 R
4019 4164 0.176680 ATGAGCTACTTCGCACCCTG 59.823 55.000 0.00 0.0 0.00 4.45 R
4020 4165 0.905357 AATGAGCTACTTCGCACCCT 59.095 50.000 0.00 0.0 0.00 4.34 R
4909 5054 0.108585 AGCCGCAGAAAGTTTCCTCA 59.891 50.000 12.05 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 1.180029 TTTTCTCGGGTAGGAGGACG 58.820 55.000 0.00 0.00 34.74 4.79
72 74 3.217743 CTCGGGTAGGAGGACGGC 61.218 72.222 0.00 0.00 0.00 5.68
198 207 4.436998 GTGCCCTCCTCGACCGTG 62.437 72.222 0.00 0.00 0.00 4.94
248 257 1.935327 CTTCCAGGGGTCGTCGTCTC 61.935 65.000 0.00 0.00 0.00 3.36
249 258 3.450115 CCAGGGGTCGTCGTCTCC 61.450 72.222 0.00 0.00 0.00 3.71
250 259 3.812019 CAGGGGTCGTCGTCTCCG 61.812 72.222 2.62 0.00 0.00 4.63
277 286 3.775654 CGCCGCTCCTCTTCCCTT 61.776 66.667 0.00 0.00 0.00 3.95
279 288 2.904131 CCGCTCCTCTTCCCTTCC 59.096 66.667 0.00 0.00 0.00 3.46
280 289 2.736826 CCGCTCCTCTTCCCTTCCC 61.737 68.421 0.00 0.00 0.00 3.97
281 290 2.736826 CGCTCCTCTTCCCTTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
325 334 2.045634 GGCCTTCCCGGTGGTTAC 60.046 66.667 0.00 0.00 34.25 2.50
342 351 4.452733 CGGGGAGGAGTCGTTGGC 62.453 72.222 0.00 0.00 0.00 4.52
404 413 2.448736 GGTGGGGGAGGAGGGATC 60.449 72.222 0.00 0.00 0.00 3.36
405 414 2.844839 GTGGGGGAGGAGGGATCG 60.845 72.222 0.00 0.00 0.00 3.69
454 463 4.133796 GGCCGGATTTGCTGGTGC 62.134 66.667 5.05 0.00 45.49 5.01
535 544 3.951306 TGTTTCATTTCGTGCTGTTCTG 58.049 40.909 0.00 0.00 0.00 3.02
553 562 0.615331 TGTCTCCTGTTCATCCCTGC 59.385 55.000 0.00 0.00 0.00 4.85
616 627 3.551046 CCGTGTGTCAGATACAGATAGGC 60.551 52.174 0.00 0.00 39.29 3.93
619 630 3.638627 TGTGTCAGATACAGATAGGCAGG 59.361 47.826 0.00 0.00 39.29 4.85
628 639 3.878778 ACAGATAGGCAGGCTACTTTTG 58.121 45.455 5.70 5.28 0.00 2.44
635 646 2.514803 GCAGGCTACTTTTGGGAAAGA 58.485 47.619 5.95 0.00 44.03 2.52
638 649 2.108250 AGGCTACTTTTGGGAAAGAGCA 59.892 45.455 17.02 0.00 44.03 4.26
640 651 3.129462 GGCTACTTTTGGGAAAGAGCATC 59.871 47.826 17.02 5.55 44.03 3.91
717 728 3.209410 GGGCCATACATCAGTTCTTCAG 58.791 50.000 4.39 0.00 0.00 3.02
718 729 3.209410 GGCCATACATCAGTTCTTCAGG 58.791 50.000 0.00 0.00 0.00 3.86
724 735 6.322456 CCATACATCAGTTCTTCAGGTCTAGA 59.678 42.308 0.00 0.00 0.00 2.43
725 736 5.913137 ACATCAGTTCTTCAGGTCTAGAG 57.087 43.478 0.00 0.00 0.00 2.43
726 737 5.329399 ACATCAGTTCTTCAGGTCTAGAGT 58.671 41.667 0.00 0.00 0.00 3.24
728 739 4.730966 TCAGTTCTTCAGGTCTAGAGTGT 58.269 43.478 0.00 0.00 0.00 3.55
730 741 3.829601 AGTTCTTCAGGTCTAGAGTGTGG 59.170 47.826 0.00 0.00 0.00 4.17
732 743 1.827969 CTTCAGGTCTAGAGTGTGGGG 59.172 57.143 0.00 0.00 0.00 4.96
798 819 7.060421 TGGGGTGTAAATATTCTCCTTCATTC 58.940 38.462 0.00 0.00 0.00 2.67
822 849 6.041523 TCCCTTTTTATTTTCTGGGACAAGTG 59.958 38.462 0.00 0.00 38.67 3.16
827 854 0.961019 TTTCTGGGACAAGTGCATGC 59.039 50.000 11.82 11.82 38.70 4.06
872 899 8.565896 TTTATTTGTGCTGATGTCAGAGTTAT 57.434 30.769 13.94 3.17 46.59 1.89
931 963 5.751243 ACCGCGCAATCTTTAATTTCTAT 57.249 34.783 8.75 0.00 0.00 1.98
979 1011 5.007724 CCTGGAATAATAAGCTTCGGTTGTC 59.992 44.000 0.00 0.00 0.00 3.18
1032 1064 5.884232 TCCAGATGATGAAAAGATGAAGGTG 59.116 40.000 0.00 0.00 0.00 4.00
1033 1065 5.450137 CCAGATGATGAAAAGATGAAGGTGC 60.450 44.000 0.00 0.00 0.00 5.01
1095 1127 9.591792 TTAGTTTCAGAGATACATCATTGACTG 57.408 33.333 0.00 0.00 0.00 3.51
1171 1203 1.592350 GCGAAAGATAAGAAAGCCGCG 60.592 52.381 0.00 0.00 32.24 6.46
1198 1230 1.077625 AGACCGTCCAAGCTCCTCT 59.922 57.895 0.00 0.00 0.00 3.69
1238 1270 9.358872 CTTAATTCTTTTGGAAGCTGAATAACC 57.641 33.333 0.00 0.00 37.36 2.85
1256 1288 2.584236 ACCGAGTCACTGTCTTGTAGT 58.416 47.619 0.00 0.00 0.00 2.73
1306 1354 6.664816 TCAAAATTTAGCTCATCTGGGTTCAT 59.335 34.615 0.00 0.00 0.00 2.57
1372 1420 4.745620 GCCTCTGTCAACTTCGTATAATCC 59.254 45.833 0.00 0.00 0.00 3.01
1373 1421 5.681437 GCCTCTGTCAACTTCGTATAATCCA 60.681 44.000 0.00 0.00 0.00 3.41
1521 1574 5.221803 ACTGTTCCATGTTCTCTTGTCATCT 60.222 40.000 0.00 0.00 0.00 2.90
1522 1575 6.014242 ACTGTTCCATGTTCTCTTGTCATCTA 60.014 38.462 0.00 0.00 0.00 1.98
1523 1576 6.166279 TGTTCCATGTTCTCTTGTCATCTAC 58.834 40.000 0.00 0.00 0.00 2.59
1524 1577 6.014242 TGTTCCATGTTCTCTTGTCATCTACT 60.014 38.462 0.00 0.00 0.00 2.57
1525 1578 6.214191 TCCATGTTCTCTTGTCATCTACTC 57.786 41.667 0.00 0.00 0.00 2.59
1526 1579 5.716703 TCCATGTTCTCTTGTCATCTACTCA 59.283 40.000 0.00 0.00 0.00 3.41
1527 1580 6.382282 TCCATGTTCTCTTGTCATCTACTCAT 59.618 38.462 0.00 0.00 0.00 2.90
1528 1581 6.700960 CCATGTTCTCTTGTCATCTACTCATC 59.299 42.308 0.00 0.00 0.00 2.92
1562 1615 2.437359 CCAAGCTCCTCCAAGGCG 60.437 66.667 0.00 0.00 34.61 5.52
1598 1651 3.402628 TTCAGACCACTTTCAGGTAGC 57.597 47.619 0.00 0.00 40.09 3.58
1628 1681 0.316204 GCACTTTGCTGCACTGGATT 59.684 50.000 0.00 0.00 40.96 3.01
1636 1689 3.076621 TGCTGCACTGGATTACTCTTTG 58.923 45.455 0.00 0.00 0.00 2.77
1661 1714 3.636300 TGCTGCTGGTTTTATTTGACTGT 59.364 39.130 0.00 0.00 0.00 3.55
2073 2126 1.098712 AGACTTGCGGTGCCGAAAAA 61.099 50.000 15.45 4.46 42.83 1.94
2089 2142 7.373441 GTGCCGAAAAATTCATAGAAGAATACG 59.627 37.037 0.00 0.00 37.24 3.06
2289 2383 4.990426 CCTTGGAGTTAAATTGGCTTGTTG 59.010 41.667 0.00 0.00 0.00 3.33
2577 2686 4.637977 GCAATCTTCCAGTCCTCCTTAAAG 59.362 45.833 0.00 0.00 0.00 1.85
2802 2911 1.821753 TCTGCTTCTGCCTCTAGTGAC 59.178 52.381 0.00 0.00 38.71 3.67
2966 3075 8.779354 AACAAGGTTAGAACTGAATCTGTATC 57.221 34.615 0.00 0.00 0.00 2.24
3105 3233 5.316167 TGCTCTGTTTCCTGTATCATGTTT 58.684 37.500 0.00 0.00 0.00 2.83
3225 3362 5.385509 TTCTTTTATGCCTTGCACTTACC 57.614 39.130 0.00 0.00 43.04 2.85
3696 3841 3.412237 TTTCCCCAACGAGGAACTAAG 57.588 47.619 0.00 0.00 43.08 2.18
3960 4105 7.683437 ACAAATAACTCCTACTTTAACAGCC 57.317 36.000 0.00 0.00 0.00 4.85
3973 4118 5.830991 ACTTTAACAGCCATGACAACCTTTA 59.169 36.000 0.00 0.00 0.00 1.85
3974 4119 5.957842 TTAACAGCCATGACAACCTTTAG 57.042 39.130 0.00 0.00 0.00 1.85
3975 4120 3.508845 ACAGCCATGACAACCTTTAGT 57.491 42.857 0.00 0.00 0.00 2.24
3976 4121 4.634012 ACAGCCATGACAACCTTTAGTA 57.366 40.909 0.00 0.00 0.00 1.82
3977 4122 4.324267 ACAGCCATGACAACCTTTAGTAC 58.676 43.478 0.00 0.00 0.00 2.73
3978 4123 4.041691 ACAGCCATGACAACCTTTAGTACT 59.958 41.667 0.00 0.00 0.00 2.73
3979 4124 4.631813 CAGCCATGACAACCTTTAGTACTC 59.368 45.833 0.00 0.00 0.00 2.59
3980 4125 3.939592 GCCATGACAACCTTTAGTACTCC 59.060 47.826 0.00 0.00 0.00 3.85
3981 4126 4.514401 CCATGACAACCTTTAGTACTCCC 58.486 47.826 0.00 0.00 0.00 4.30
3982 4127 4.225267 CCATGACAACCTTTAGTACTCCCT 59.775 45.833 0.00 0.00 0.00 4.20
3983 4128 5.420409 CATGACAACCTTTAGTACTCCCTC 58.580 45.833 0.00 0.00 0.00 4.30
3984 4129 4.748701 TGACAACCTTTAGTACTCCCTCT 58.251 43.478 0.00 0.00 0.00 3.69
3985 4130 4.527038 TGACAACCTTTAGTACTCCCTCTG 59.473 45.833 0.00 0.00 0.00 3.35
3986 4131 4.490706 ACAACCTTTAGTACTCCCTCTGT 58.509 43.478 0.00 0.00 0.00 3.41
3987 4132 4.906060 ACAACCTTTAGTACTCCCTCTGTT 59.094 41.667 0.00 0.00 0.00 3.16
3988 4133 5.011840 ACAACCTTTAGTACTCCCTCTGTTC 59.988 44.000 0.00 0.00 0.00 3.18
3989 4134 4.748701 ACCTTTAGTACTCCCTCTGTTCA 58.251 43.478 0.00 0.00 0.00 3.18
3990 4135 4.527427 ACCTTTAGTACTCCCTCTGTTCAC 59.473 45.833 0.00 0.00 0.00 3.18
3991 4136 4.773149 CCTTTAGTACTCCCTCTGTTCACT 59.227 45.833 0.00 0.00 0.00 3.41
3992 4137 5.246429 CCTTTAGTACTCCCTCTGTTCACTT 59.754 44.000 0.00 0.00 0.00 3.16
3993 4138 6.239629 CCTTTAGTACTCCCTCTGTTCACTTT 60.240 42.308 0.00 0.00 0.00 2.66
3994 4139 6.742559 TTAGTACTCCCTCTGTTCACTTTT 57.257 37.500 0.00 0.00 0.00 2.27
3995 4140 7.844493 TTAGTACTCCCTCTGTTCACTTTTA 57.156 36.000 0.00 0.00 0.00 1.52
3996 4141 6.936968 AGTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
3997 4142 9.537852 TTAGTACTCCCTCTGTTCACTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
3998 4143 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
3999 4144 8.532819 AGTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
4000 4145 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
4001 4146 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
4002 4147 4.640647 CCCTCTGTTCACTTTTATAAGGCC 59.359 45.833 0.00 0.00 35.61 5.19
4003 4148 5.501156 CCTCTGTTCACTTTTATAAGGCCT 58.499 41.667 0.00 0.00 35.61 5.19
4004 4149 5.946377 CCTCTGTTCACTTTTATAAGGCCTT 59.054 40.000 24.18 24.18 35.61 4.35
4005 4150 6.127897 CCTCTGTTCACTTTTATAAGGCCTTG 60.128 42.308 28.77 12.48 35.61 3.61
4006 4151 6.539173 TCTGTTCACTTTTATAAGGCCTTGA 58.461 36.000 28.77 11.98 35.61 3.02
4007 4152 7.001674 TCTGTTCACTTTTATAAGGCCTTGAA 58.998 34.615 28.77 17.44 35.61 2.69
4008 4153 7.174946 TCTGTTCACTTTTATAAGGCCTTGAAG 59.825 37.037 28.77 24.09 35.61 3.02
4009 4154 7.001674 TGTTCACTTTTATAAGGCCTTGAAGA 58.998 34.615 28.77 15.87 35.61 2.87
4010 4155 7.040686 TGTTCACTTTTATAAGGCCTTGAAGAC 60.041 37.037 28.77 17.56 35.61 3.01
4011 4156 6.539173 TCACTTTTATAAGGCCTTGAAGACA 58.461 36.000 28.77 7.10 35.61 3.41
4012 4157 7.175104 TCACTTTTATAAGGCCTTGAAGACAT 58.825 34.615 28.77 14.50 35.61 3.06
4013 4158 7.669722 TCACTTTTATAAGGCCTTGAAGACATT 59.330 33.333 28.77 0.00 35.61 2.71
4014 4159 8.306761 CACTTTTATAAGGCCTTGAAGACATTT 58.693 33.333 28.77 0.00 35.61 2.32
4015 4160 8.523658 ACTTTTATAAGGCCTTGAAGACATTTC 58.476 33.333 28.77 0.00 35.61 2.17
4016 4161 8.415950 TTTTATAAGGCCTTGAAGACATTTCA 57.584 30.769 28.77 3.15 0.00 2.69
4017 4162 7.630242 TTATAAGGCCTTGAAGACATTTCAG 57.370 36.000 28.77 0.00 0.00 3.02
4018 4163 3.795688 AGGCCTTGAAGACATTTCAGA 57.204 42.857 0.00 0.00 0.00 3.27
4019 4164 3.416156 AGGCCTTGAAGACATTTCAGAC 58.584 45.455 0.00 0.00 0.00 3.51
4020 4165 3.149196 GGCCTTGAAGACATTTCAGACA 58.851 45.455 0.00 0.00 0.00 3.41
4021 4166 3.190118 GGCCTTGAAGACATTTCAGACAG 59.810 47.826 0.00 0.00 0.00 3.51
4022 4167 3.190118 GCCTTGAAGACATTTCAGACAGG 59.810 47.826 0.00 3.03 30.77 4.00
4023 4168 3.755378 CCTTGAAGACATTTCAGACAGGG 59.245 47.826 0.00 0.00 0.00 4.45
4024 4169 4.392940 CTTGAAGACATTTCAGACAGGGT 58.607 43.478 0.00 0.00 0.00 4.34
4025 4170 3.743521 TGAAGACATTTCAGACAGGGTG 58.256 45.455 0.00 0.00 0.00 4.61
4026 4171 2.191128 AGACATTTCAGACAGGGTGC 57.809 50.000 0.00 0.00 0.00 5.01
4027 4172 0.798776 GACATTTCAGACAGGGTGCG 59.201 55.000 0.00 0.00 0.00 5.34
4028 4173 0.396435 ACATTTCAGACAGGGTGCGA 59.604 50.000 0.00 0.00 0.00 5.10
4029 4174 1.202758 ACATTTCAGACAGGGTGCGAA 60.203 47.619 0.00 0.00 0.00 4.70
4030 4175 1.466167 CATTTCAGACAGGGTGCGAAG 59.534 52.381 0.00 0.00 0.00 3.79
4031 4176 0.468226 TTTCAGACAGGGTGCGAAGT 59.532 50.000 0.00 0.00 0.00 3.01
4032 4177 1.334160 TTCAGACAGGGTGCGAAGTA 58.666 50.000 0.00 0.00 0.00 2.24
4033 4178 0.888619 TCAGACAGGGTGCGAAGTAG 59.111 55.000 0.00 0.00 0.00 2.57
4034 4179 0.737715 CAGACAGGGTGCGAAGTAGC 60.738 60.000 0.00 0.00 40.63 3.58
4035 4180 0.900647 AGACAGGGTGCGAAGTAGCT 60.901 55.000 0.00 0.00 41.25 3.32
4036 4181 0.458716 GACAGGGTGCGAAGTAGCTC 60.459 60.000 0.00 0.00 41.25 4.09
4037 4182 1.185618 ACAGGGTGCGAAGTAGCTCA 61.186 55.000 0.00 0.00 41.25 4.26
4038 4183 0.176680 CAGGGTGCGAAGTAGCTCAT 59.823 55.000 0.00 0.00 41.25 2.90
4039 4184 0.905357 AGGGTGCGAAGTAGCTCATT 59.095 50.000 0.00 0.00 41.25 2.57
4040 4185 1.279271 AGGGTGCGAAGTAGCTCATTT 59.721 47.619 0.00 0.00 41.25 2.32
4041 4186 2.084546 GGGTGCGAAGTAGCTCATTTT 58.915 47.619 0.00 0.00 41.25 1.82
4042 4187 2.096013 GGGTGCGAAGTAGCTCATTTTC 59.904 50.000 0.00 0.00 41.25 2.29
4043 4188 2.742053 GGTGCGAAGTAGCTCATTTTCA 59.258 45.455 0.00 0.00 37.71 2.69
4044 4189 3.181516 GGTGCGAAGTAGCTCATTTTCAG 60.182 47.826 0.00 0.00 37.71 3.02
4045 4190 3.433615 GTGCGAAGTAGCTCATTTTCAGT 59.566 43.478 0.00 0.00 38.13 3.41
4046 4191 4.065088 TGCGAAGTAGCTCATTTTCAGTT 58.935 39.130 0.00 0.00 38.13 3.16
4047 4192 4.083855 TGCGAAGTAGCTCATTTTCAGTTG 60.084 41.667 0.00 0.00 38.13 3.16
4048 4193 4.083802 GCGAAGTAGCTCATTTTCAGTTGT 60.084 41.667 0.00 0.00 0.00 3.32
4049 4194 5.612865 CGAAGTAGCTCATTTTCAGTTGTC 58.387 41.667 0.00 0.00 0.00 3.18
4050 4195 5.406780 CGAAGTAGCTCATTTTCAGTTGTCT 59.593 40.000 0.00 0.00 0.00 3.41
4051 4196 6.586463 CGAAGTAGCTCATTTTCAGTTGTCTA 59.414 38.462 0.00 0.00 0.00 2.59
4052 4197 7.116376 CGAAGTAGCTCATTTTCAGTTGTCTAA 59.884 37.037 0.00 0.00 0.00 2.10
4053 4198 8.677148 AAGTAGCTCATTTTCAGTTGTCTAAA 57.323 30.769 0.00 0.00 0.00 1.85
4054 4199 8.677148 AGTAGCTCATTTTCAGTTGTCTAAAA 57.323 30.769 0.00 0.00 0.00 1.52
4055 4200 8.560374 AGTAGCTCATTTTCAGTTGTCTAAAAC 58.440 33.333 0.00 0.00 0.00 2.43
4056 4201 6.430451 AGCTCATTTTCAGTTGTCTAAAACG 58.570 36.000 0.00 0.00 35.13 3.60
4057 4202 6.260050 AGCTCATTTTCAGTTGTCTAAAACGA 59.740 34.615 0.00 0.00 35.13 3.85
4058 4203 6.357240 GCTCATTTTCAGTTGTCTAAAACGAC 59.643 38.462 0.00 0.00 41.93 4.34
4070 4215 9.493206 GTTGTCTAAAACGACTTACAAAAATGA 57.507 29.630 0.00 0.00 38.97 2.57
4072 4217 9.493206 TGTCTAAAACGACTTACAAAAATGAAC 57.507 29.630 0.00 0.00 35.00 3.18
4073 4218 8.667204 GTCTAAAACGACTTACAAAAATGAACG 58.333 33.333 0.00 0.00 0.00 3.95
4074 4219 6.799786 AAAACGACTTACAAAAATGAACGG 57.200 33.333 0.00 0.00 0.00 4.44
4075 4220 5.738118 AACGACTTACAAAAATGAACGGA 57.262 34.783 0.00 0.00 0.00 4.69
4076 4221 5.338614 ACGACTTACAAAAATGAACGGAG 57.661 39.130 0.00 0.00 0.00 4.63
4077 4222 4.212636 ACGACTTACAAAAATGAACGGAGG 59.787 41.667 0.00 0.00 0.00 4.30
4078 4223 4.378046 CGACTTACAAAAATGAACGGAGGG 60.378 45.833 0.00 0.00 0.00 4.30
4124 4269 8.918202 ATGACGGTATGACCACAAATTATATT 57.082 30.769 0.00 0.00 38.47 1.28
4382 4527 9.590451 TTTAAGACCTAACTATACAATGAACCG 57.410 33.333 0.00 0.00 0.00 4.44
4383 4528 5.598769 AGACCTAACTATACAATGAACCGC 58.401 41.667 0.00 0.00 0.00 5.68
4384 4529 5.363005 AGACCTAACTATACAATGAACCGCT 59.637 40.000 0.00 0.00 0.00 5.52
4385 4530 5.598769 ACCTAACTATACAATGAACCGCTC 58.401 41.667 0.00 0.00 0.00 5.03
4386 4531 4.989168 CCTAACTATACAATGAACCGCTCC 59.011 45.833 0.00 0.00 0.00 4.70
4387 4532 3.470645 ACTATACAATGAACCGCTCCC 57.529 47.619 0.00 0.00 0.00 4.30
4388 4533 3.039011 ACTATACAATGAACCGCTCCCT 58.961 45.455 0.00 0.00 0.00 4.20
4389 4534 2.622064 ATACAATGAACCGCTCCCTC 57.378 50.000 0.00 0.00 0.00 4.30
4390 4535 0.539986 TACAATGAACCGCTCCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
4391 4536 1.299648 CAATGAACCGCTCCCTCCA 59.700 57.895 0.00 0.00 0.00 3.86
4392 4537 0.107017 CAATGAACCGCTCCCTCCAT 60.107 55.000 0.00 0.00 0.00 3.41
4393 4538 0.181350 AATGAACCGCTCCCTCCATC 59.819 55.000 0.00 0.00 0.00 3.51
4394 4539 1.700042 ATGAACCGCTCCCTCCATCC 61.700 60.000 0.00 0.00 0.00 3.51
4395 4540 3.090532 AACCGCTCCCTCCATCCC 61.091 66.667 0.00 0.00 0.00 3.85
4396 4541 3.943137 AACCGCTCCCTCCATCCCA 62.943 63.158 0.00 0.00 0.00 4.37
4397 4542 2.851102 CCGCTCCCTCCATCCCAT 60.851 66.667 0.00 0.00 0.00 4.00
4398 4543 1.536418 CCGCTCCCTCCATCCCATA 60.536 63.158 0.00 0.00 0.00 2.74
4399 4544 1.127567 CCGCTCCCTCCATCCCATAA 61.128 60.000 0.00 0.00 0.00 1.90
4400 4545 0.987294 CGCTCCCTCCATCCCATAAT 59.013 55.000 0.00 0.00 0.00 1.28
4401 4546 2.187958 CGCTCCCTCCATCCCATAATA 58.812 52.381 0.00 0.00 0.00 0.98
4402 4547 2.774234 CGCTCCCTCCATCCCATAATAT 59.226 50.000 0.00 0.00 0.00 1.28
4403 4548 3.967326 CGCTCCCTCCATCCCATAATATA 59.033 47.826 0.00 0.00 0.00 0.86
4404 4549 4.408921 CGCTCCCTCCATCCCATAATATAA 59.591 45.833 0.00 0.00 0.00 0.98
4405 4550 5.453903 CGCTCCCTCCATCCCATAATATAAG 60.454 48.000 0.00 0.00 0.00 1.73
4406 4551 5.667626 GCTCCCTCCATCCCATAATATAAGA 59.332 44.000 0.00 0.00 0.00 2.10
4407 4552 6.183361 GCTCCCTCCATCCCATAATATAAGAG 60.183 46.154 0.00 0.00 0.00 2.85
4408 4553 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
4409 4554 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
4410 4555 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
4411 4556 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
4412 4557 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
4413 4558 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
4414 4559 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
4415 4560 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
4416 4561 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
4417 4562 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
4418 4563 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4419 4564 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4420 4565 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4423 4568 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
4424 4569 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
4426 4571 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
4427 4572 5.353938 AGAGCGTTTTTGACACTAGTGTAA 58.646 37.500 27.98 19.07 45.05 2.41
4428 4573 5.813672 AGAGCGTTTTTGACACTAGTGTAAA 59.186 36.000 27.98 23.90 45.05 2.01
4429 4574 6.314400 AGAGCGTTTTTGACACTAGTGTAAAA 59.686 34.615 27.87 27.87 45.05 1.52
4430 4575 6.844254 AGCGTTTTTGACACTAGTGTAAAAA 58.156 32.000 33.61 33.61 46.61 1.94
4450 4595 5.964958 AAAATGCTCATATTATGGGACGG 57.035 39.130 7.76 0.00 30.24 4.79
4451 4596 4.908601 AATGCTCATATTATGGGACGGA 57.091 40.909 7.76 0.00 30.24 4.69
4452 4597 3.961480 TGCTCATATTATGGGACGGAG 57.039 47.619 7.76 0.00 30.24 4.63
4453 4598 2.567169 TGCTCATATTATGGGACGGAGG 59.433 50.000 7.76 0.00 30.24 4.30
4454 4599 2.093447 GCTCATATTATGGGACGGAGGG 60.093 54.545 7.76 0.00 30.24 4.30
4455 4600 3.441101 CTCATATTATGGGACGGAGGGA 58.559 50.000 0.00 0.00 30.24 4.20
4456 4601 3.441101 TCATATTATGGGACGGAGGGAG 58.559 50.000 3.89 0.00 0.00 4.30
4473 4618 7.039644 ACGGAGGGAGTATTAATGAGTTATCAG 60.040 40.741 0.00 0.00 39.29 2.90
4477 4622 9.213777 AGGGAGTATTAATGAGTTATCAGTTCA 57.786 33.333 0.00 0.00 39.29 3.18
4792 4937 9.520204 CTATGAAAGTTTACATAAAGCAATGGG 57.480 33.333 0.00 0.00 0.00 4.00
4909 5054 0.617413 CACTCATGGAGGAAGGTGCT 59.383 55.000 0.00 0.00 33.35 4.40
4931 5076 1.518903 GGAAACTTTCTGCGGCTGCT 61.519 55.000 20.27 0.00 43.34 4.24
4968 5113 4.935702 TCCAGCAAATTGTTTTCTCACAG 58.064 39.130 0.00 0.00 0.00 3.66
5189 5336 4.024809 GTCTGGAGCAAAGTTGTACTGAAC 60.025 45.833 0.00 0.00 0.00 3.18
5207 5354 3.763360 TGAACGAAGGCATCCAATCAAAT 59.237 39.130 0.00 0.00 0.00 2.32
5269 5416 5.008911 CAGTGTGATGGTCATTTCTTGTGAA 59.991 40.000 0.00 0.00 0.00 3.18
5322 5469 4.275689 TGCTTTGTGTTCGTGATCTCATTT 59.724 37.500 0.00 0.00 0.00 2.32
5326 5473 4.888917 TGTGTTCGTGATCTCATTTGGTA 58.111 39.130 0.00 0.00 0.00 3.25
5341 5488 7.883311 TCTCATTTGGTAAAAGTAGAGGGAAAG 59.117 37.037 0.00 0.00 0.00 2.62
5381 5528 6.199719 CACATGTTTCTTTTCAAAGAGGAAGC 59.800 38.462 0.00 0.00 45.01 3.86
5418 5566 1.751437 GGTTCATGACCTGTAAGCCC 58.249 55.000 0.00 0.00 45.55 5.19
5433 5582 3.996150 AAGCCCAAAATAGATGATGCG 57.004 42.857 0.00 0.00 0.00 4.73
5449 5598 5.947228 TGATGCGGAATGATAAAAGGATC 57.053 39.130 0.00 0.00 0.00 3.36
5494 5643 4.097135 TCACAATTCGTGTTCAACCACATT 59.903 37.500 7.57 0.00 46.44 2.71
5551 5700 2.273557 CATGCCATAAAAGCCACTTGC 58.726 47.619 0.00 0.00 41.71 4.01
5581 5730 2.692557 ACATAAAACCACACAAGCAGCA 59.307 40.909 0.00 0.00 0.00 4.41
5598 5747 1.871772 CAAGGGCGCTTCAACTCAG 59.128 57.895 13.91 0.00 0.00 3.35
5663 5815 7.225145 CAGAAAAATTCACAAATCAAAGAGGCA 59.775 33.333 0.00 0.00 0.00 4.75
5671 5823 7.725251 TCACAAATCAAAGAGGCATTTTAACT 58.275 30.769 0.00 0.00 0.00 2.24
5700 5852 8.980481 AGATTGGGTCTACAAATATTGTAAGG 57.020 34.615 4.68 0.00 44.80 2.69
5727 5879 7.883229 ATATTCATGCGATAAACATCGTGTA 57.117 32.000 8.62 0.00 45.11 2.90
5764 5916 5.062558 GTCGGATGGCTTGAAATTCAAATTG 59.937 40.000 9.85 0.00 35.73 2.32
5765 5917 5.047448 TCGGATGGCTTGAAATTCAAATTGA 60.047 36.000 9.85 0.00 35.73 2.57
5783 5935 4.953940 TTGAAGGCTTGGCAAGTATTTT 57.046 36.364 26.71 15.88 0.00 1.82
5857 6009 2.501723 GAGGGCAGAACTATGACTTGGA 59.498 50.000 0.00 0.00 0.00 3.53
5867 6019 4.848357 ACTATGACTTGGATTGGTTCTGG 58.152 43.478 0.00 0.00 0.00 3.86
5868 6020 1.909700 TGACTTGGATTGGTTCTGGC 58.090 50.000 0.00 0.00 0.00 4.85
5869 6021 1.177401 GACTTGGATTGGTTCTGGCC 58.823 55.000 0.00 0.00 0.00 5.36
5870 6022 0.251787 ACTTGGATTGGTTCTGGCCC 60.252 55.000 0.00 0.00 0.00 5.80
5871 6023 1.304052 TTGGATTGGTTCTGGCCCG 60.304 57.895 0.00 0.00 0.00 6.13
5872 6024 2.075355 TTGGATTGGTTCTGGCCCGT 62.075 55.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
281 290 2.717139 GAAAGGCGAGGCGGATAGGG 62.717 65.000 0.00 0.00 0.00 3.53
325 334 4.452733 GCCAACGACTCCTCCCCG 62.453 72.222 0.00 0.00 0.00 5.73
348 357 4.166144 TCCTCCTAAATTAGCCAAGAAGGG 59.834 45.833 0.00 0.00 38.09 3.95
358 367 2.373502 CAGGGCCCTCCTCCTAAATTAG 59.626 54.545 25.77 0.95 46.12 1.73
404 413 3.827898 GGGAGAGCCGTGGACTCG 61.828 72.222 0.00 0.00 39.23 4.18
405 414 3.827898 CGGGAGAGCCGTGGACTC 61.828 72.222 0.00 0.00 33.83 3.36
459 468 1.425428 CCGAATCGGCAGCAGTTTC 59.575 57.895 9.39 6.34 41.17 2.78
535 544 0.107459 GGCAGGGATGAACAGGAGAC 60.107 60.000 0.00 0.00 0.00 3.36
553 562 1.662629 CATTACAGCTCGCAACAGAGG 59.337 52.381 0.00 0.00 38.63 3.69
616 627 2.489722 GCTCTTTCCCAAAAGTAGCCTG 59.510 50.000 9.34 0.00 42.17 4.85
619 630 3.129462 GGATGCTCTTTCCCAAAAGTAGC 59.871 47.826 11.80 11.80 42.17 3.58
628 639 1.407989 CCACAGAGGATGCTCTTTCCC 60.408 57.143 14.94 0.00 41.22 3.97
640 651 3.001514 CCCCCACATCCACAGAGG 58.998 66.667 0.00 0.00 39.47 3.69
666 677 8.792633 CCAGAATAAACAGAAACCTTTCACATA 58.207 33.333 0.78 0.00 39.61 2.29
677 688 3.258123 GCCCAAGCCAGAATAAACAGAAA 59.742 43.478 0.00 0.00 0.00 2.52
704 715 5.184864 ACACTCTAGACCTGAAGAACTGATG 59.815 44.000 0.00 0.00 0.00 3.07
708 719 3.829601 CCACACTCTAGACCTGAAGAACT 59.170 47.826 0.00 0.00 0.00 3.01
717 728 2.838202 TCAAATCCCCACACTCTAGACC 59.162 50.000 0.00 0.00 0.00 3.85
718 729 4.553330 TTCAAATCCCCACACTCTAGAC 57.447 45.455 0.00 0.00 0.00 2.59
724 735 4.653341 TGTTCAAATTCAAATCCCCACACT 59.347 37.500 0.00 0.00 0.00 3.55
725 736 4.954875 TGTTCAAATTCAAATCCCCACAC 58.045 39.130 0.00 0.00 0.00 3.82
726 737 5.104776 TGTTGTTCAAATTCAAATCCCCACA 60.105 36.000 0.00 0.00 0.00 4.17
728 739 5.620738 TGTTGTTCAAATTCAAATCCCCA 57.379 34.783 0.00 0.00 0.00 4.96
798 819 6.223120 CACTTGTCCCAGAAAATAAAAAGGG 58.777 40.000 0.00 0.00 37.65 3.95
806 829 2.028748 GCATGCACTTGTCCCAGAAAAT 60.029 45.455 14.21 0.00 0.00 1.82
827 854 5.665916 AAATAGGGGAAAGAAAGCATGTG 57.334 39.130 0.00 0.00 0.00 3.21
872 899 7.947782 AATACTAATTAGATGAACAGGGGGA 57.052 36.000 19.38 0.00 0.00 4.81
931 963 5.357878 GCTCAAATCTGACCACATTATTGGA 59.642 40.000 0.00 0.00 39.24 3.53
979 1011 1.497722 GCTTTGAAGTCCGCCGAAG 59.502 57.895 0.00 0.00 0.00 3.79
1032 1064 0.586802 GGGTGAAACAAGAGACACGC 59.413 55.000 0.00 0.00 39.98 5.34
1033 1065 1.226746 GGGGTGAAACAAGAGACACG 58.773 55.000 0.00 0.00 39.98 4.49
1105 1137 5.745227 CCCTGGAGTACAATGATGTAAAGT 58.255 41.667 0.00 0.00 43.41 2.66
1124 1156 0.036010 ATCTTTGGACGACAGCCCTG 60.036 55.000 0.00 0.00 0.00 4.45
1238 1270 8.912787 ATTTATTACTACAAGACAGTGACTCG 57.087 34.615 0.00 0.00 0.00 4.18
1372 1420 2.290916 CTGGCTGCTTCTTCATAGCATG 59.709 50.000 0.00 0.00 46.63 4.06
1373 1421 2.092538 ACTGGCTGCTTCTTCATAGCAT 60.093 45.455 0.00 0.00 46.63 3.79
1521 1574 7.093509 TGGTGCAGATTTAACTACAGATGAGTA 60.094 37.037 0.00 0.00 0.00 2.59
1522 1575 6.109359 GGTGCAGATTTAACTACAGATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
1523 1576 6.108687 TGGTGCAGATTTAACTACAGATGAG 58.891 40.000 0.00 0.00 0.00 2.90
1524 1577 6.048732 TGGTGCAGATTTAACTACAGATGA 57.951 37.500 0.00 0.00 0.00 2.92
1525 1578 6.676456 GCTTGGTGCAGATTTAACTACAGATG 60.676 42.308 0.00 0.00 42.31 2.90
1526 1579 5.355350 GCTTGGTGCAGATTTAACTACAGAT 59.645 40.000 0.00 0.00 42.31 2.90
1527 1580 4.695455 GCTTGGTGCAGATTTAACTACAGA 59.305 41.667 0.00 0.00 42.31 3.41
1528 1581 4.697352 AGCTTGGTGCAGATTTAACTACAG 59.303 41.667 0.00 0.00 45.94 2.74
1538 1591 1.203441 TGGAGGAGCTTGGTGCAGAT 61.203 55.000 0.00 0.00 45.94 2.90
1562 1615 3.379688 GTCTGAATGGGGAAGAAGATTGC 59.620 47.826 0.00 0.00 0.00 3.56
1598 1651 3.427233 GCAGCAAAGTGCCAGATAGAAAG 60.427 47.826 0.00 0.00 46.52 2.62
1628 1681 1.630369 ACCAGCAGCATCCAAAGAGTA 59.370 47.619 0.00 0.00 0.00 2.59
1636 1689 4.082026 AGTCAAATAAAACCAGCAGCATCC 60.082 41.667 0.00 0.00 0.00 3.51
1661 1714 9.621629 TTAGTCCAAAGAAACACAAGAATAAGA 57.378 29.630 0.00 0.00 0.00 2.10
2073 2126 6.584184 CGATCACTGCGTATTCTTCTATGAAT 59.416 38.462 0.00 0.00 39.63 2.57
2089 2142 6.020281 CAGAAAGTATGTAAGTCGATCACTGC 60.020 42.308 0.00 0.00 34.56 4.40
2196 2290 4.204012 CACCCAAAGGACTGTAAGAAACA 58.796 43.478 0.00 0.00 35.04 2.83
2289 2383 4.558538 AAGAATGTTGTCTGTTCACTGC 57.441 40.909 0.00 0.00 0.00 4.40
2577 2686 4.061596 GCATGTAAGGCTTCCTGATAGAC 58.938 47.826 1.30 0.00 42.67 2.59
2802 2911 8.926710 CAAGATACGAGGTTATATTTTAGCTGG 58.073 37.037 0.00 0.00 0.00 4.85
2966 3075 9.090692 CTTGCATAATCAAAAGGAATTACTTGG 57.909 33.333 2.96 0.00 0.00 3.61
3040 3168 9.979578 ATAATTGTCTTTGTTAATGTCTTTGCA 57.020 25.926 0.00 0.00 0.00 4.08
3105 3233 6.279513 AGCCAAATGTTGAATCCGATAAAA 57.720 33.333 0.00 0.00 0.00 1.52
3225 3362 6.064060 TGATATACATCCCTGAAGCCAAAAG 58.936 40.000 0.00 0.00 0.00 2.27
3696 3841 9.346725 CTTTTCTCATTCCATTACTTTACTTGC 57.653 33.333 0.00 0.00 0.00 4.01
3955 4100 3.508845 ACTAAAGGTTGTCATGGCTGT 57.491 42.857 0.00 0.00 0.00 4.40
3960 4105 5.187967 AGAGGGAGTACTAAAGGTTGTCATG 59.812 44.000 0.00 0.00 0.00 3.07
3973 4118 6.936968 ATAAAAGTGAACAGAGGGAGTACT 57.063 37.500 0.00 0.00 0.00 2.73
3974 4119 7.764901 CCTTATAAAAGTGAACAGAGGGAGTAC 59.235 40.741 0.00 0.00 0.00 2.73
3975 4120 7.580882 GCCTTATAAAAGTGAACAGAGGGAGTA 60.581 40.741 0.00 0.00 0.00 2.59
3976 4121 6.712276 CCTTATAAAAGTGAACAGAGGGAGT 58.288 40.000 0.00 0.00 0.00 3.85
3977 4122 5.586643 GCCTTATAAAAGTGAACAGAGGGAG 59.413 44.000 0.00 0.00 0.00 4.30
3978 4123 5.497474 GCCTTATAAAAGTGAACAGAGGGA 58.503 41.667 0.00 0.00 0.00 4.20
3979 4124 4.640647 GGCCTTATAAAAGTGAACAGAGGG 59.359 45.833 0.00 0.00 0.00 4.30
3980 4125 5.501156 AGGCCTTATAAAAGTGAACAGAGG 58.499 41.667 0.00 0.00 0.00 3.69
3981 4126 6.655003 TCAAGGCCTTATAAAAGTGAACAGAG 59.345 38.462 20.00 0.00 0.00 3.35
3982 4127 6.539173 TCAAGGCCTTATAAAAGTGAACAGA 58.461 36.000 20.00 2.74 0.00 3.41
3983 4128 6.817765 TCAAGGCCTTATAAAAGTGAACAG 57.182 37.500 20.00 0.00 0.00 3.16
3984 4129 7.001674 TCTTCAAGGCCTTATAAAAGTGAACA 58.998 34.615 20.00 0.21 0.00 3.18
3985 4130 7.040686 TGTCTTCAAGGCCTTATAAAAGTGAAC 60.041 37.037 20.00 13.04 0.00 3.18
3986 4131 7.001674 TGTCTTCAAGGCCTTATAAAAGTGAA 58.998 34.615 20.00 14.48 0.00 3.18
3987 4132 6.539173 TGTCTTCAAGGCCTTATAAAAGTGA 58.461 36.000 20.00 6.54 0.00 3.41
3988 4133 6.817765 TGTCTTCAAGGCCTTATAAAAGTG 57.182 37.500 20.00 3.72 0.00 3.16
3989 4134 8.422577 AAATGTCTTCAAGGCCTTATAAAAGT 57.577 30.769 20.00 0.00 0.00 2.66
3990 4135 8.522830 TGAAATGTCTTCAAGGCCTTATAAAAG 58.477 33.333 20.00 18.05 0.00 2.27
3991 4136 8.415950 TGAAATGTCTTCAAGGCCTTATAAAA 57.584 30.769 20.00 9.43 0.00 1.52
3992 4137 7.888021 TCTGAAATGTCTTCAAGGCCTTATAAA 59.112 33.333 20.00 11.96 0.00 1.40
3993 4138 7.336931 GTCTGAAATGTCTTCAAGGCCTTATAA 59.663 37.037 20.00 14.54 0.00 0.98
3994 4139 6.823689 GTCTGAAATGTCTTCAAGGCCTTATA 59.176 38.462 20.00 6.65 0.00 0.98
3995 4140 5.649831 GTCTGAAATGTCTTCAAGGCCTTAT 59.350 40.000 20.00 3.68 0.00 1.73
3996 4141 5.003804 GTCTGAAATGTCTTCAAGGCCTTA 58.996 41.667 20.00 2.00 0.00 2.69
3997 4142 3.823304 GTCTGAAATGTCTTCAAGGCCTT 59.177 43.478 13.78 13.78 0.00 4.35
3998 4143 3.181440 TGTCTGAAATGTCTTCAAGGCCT 60.181 43.478 0.00 0.00 0.00 5.19
3999 4144 3.149196 TGTCTGAAATGTCTTCAAGGCC 58.851 45.455 0.00 0.00 0.00 5.19
4000 4145 3.190118 CCTGTCTGAAATGTCTTCAAGGC 59.810 47.826 0.00 0.00 0.00 4.35
4001 4146 3.755378 CCCTGTCTGAAATGTCTTCAAGG 59.245 47.826 0.00 0.00 0.00 3.61
4002 4147 4.214971 CACCCTGTCTGAAATGTCTTCAAG 59.785 45.833 0.00 0.00 0.00 3.02
4003 4148 4.136796 CACCCTGTCTGAAATGTCTTCAA 58.863 43.478 0.00 0.00 0.00 2.69
4004 4149 3.743521 CACCCTGTCTGAAATGTCTTCA 58.256 45.455 0.00 0.00 0.00 3.02
4005 4150 2.485814 GCACCCTGTCTGAAATGTCTTC 59.514 50.000 0.00 0.00 0.00 2.87
4006 4151 2.508526 GCACCCTGTCTGAAATGTCTT 58.491 47.619 0.00 0.00 0.00 3.01
4007 4152 1.609061 CGCACCCTGTCTGAAATGTCT 60.609 52.381 0.00 0.00 0.00 3.41
4008 4153 0.798776 CGCACCCTGTCTGAAATGTC 59.201 55.000 0.00 0.00 0.00 3.06
4009 4154 0.396435 TCGCACCCTGTCTGAAATGT 59.604 50.000 0.00 0.00 0.00 2.71
4010 4155 1.466167 CTTCGCACCCTGTCTGAAATG 59.534 52.381 0.00 0.00 0.00 2.32
4011 4156 1.072331 ACTTCGCACCCTGTCTGAAAT 59.928 47.619 0.00 0.00 0.00 2.17
4012 4157 0.468226 ACTTCGCACCCTGTCTGAAA 59.532 50.000 0.00 0.00 0.00 2.69
4013 4158 1.272490 CTACTTCGCACCCTGTCTGAA 59.728 52.381 0.00 0.00 0.00 3.02
4014 4159 0.888619 CTACTTCGCACCCTGTCTGA 59.111 55.000 0.00 0.00 0.00 3.27
4015 4160 0.737715 GCTACTTCGCACCCTGTCTG 60.738 60.000 0.00 0.00 0.00 3.51
4016 4161 0.900647 AGCTACTTCGCACCCTGTCT 60.901 55.000 0.00 0.00 0.00 3.41
4017 4162 0.458716 GAGCTACTTCGCACCCTGTC 60.459 60.000 0.00 0.00 0.00 3.51
4018 4163 1.185618 TGAGCTACTTCGCACCCTGT 61.186 55.000 0.00 0.00 0.00 4.00
4019 4164 0.176680 ATGAGCTACTTCGCACCCTG 59.823 55.000 0.00 0.00 0.00 4.45
4020 4165 0.905357 AATGAGCTACTTCGCACCCT 59.095 50.000 0.00 0.00 0.00 4.34
4021 4166 1.739067 AAATGAGCTACTTCGCACCC 58.261 50.000 0.00 0.00 0.00 4.61
4022 4167 2.742053 TGAAAATGAGCTACTTCGCACC 59.258 45.455 0.00 0.00 0.00 5.01
4023 4168 3.433615 ACTGAAAATGAGCTACTTCGCAC 59.566 43.478 0.00 0.00 0.00 5.34
4024 4169 3.664107 ACTGAAAATGAGCTACTTCGCA 58.336 40.909 0.00 0.00 0.00 5.10
4025 4170 4.083802 ACAACTGAAAATGAGCTACTTCGC 60.084 41.667 0.00 0.00 0.00 4.70
4026 4171 5.406780 AGACAACTGAAAATGAGCTACTTCG 59.593 40.000 0.00 0.00 0.00 3.79
4027 4172 6.793492 AGACAACTGAAAATGAGCTACTTC 57.207 37.500 0.00 0.00 0.00 3.01
4028 4173 8.677148 TTTAGACAACTGAAAATGAGCTACTT 57.323 30.769 0.00 0.00 0.00 2.24
4029 4174 8.560374 GTTTTAGACAACTGAAAATGAGCTACT 58.440 33.333 0.00 0.00 34.35 2.57
4030 4175 7.530861 CGTTTTAGACAACTGAAAATGAGCTAC 59.469 37.037 0.00 0.00 34.35 3.58
4031 4176 7.439955 TCGTTTTAGACAACTGAAAATGAGCTA 59.560 33.333 0.00 0.00 34.66 3.32
4032 4177 6.260050 TCGTTTTAGACAACTGAAAATGAGCT 59.740 34.615 0.00 0.00 34.66 4.09
4033 4178 6.357240 GTCGTTTTAGACAACTGAAAATGAGC 59.643 38.462 0.00 0.00 38.24 4.26
4034 4179 7.630924 AGTCGTTTTAGACAACTGAAAATGAG 58.369 34.615 0.00 0.00 43.24 2.90
4035 4180 7.548196 AGTCGTTTTAGACAACTGAAAATGA 57.452 32.000 0.00 0.00 43.24 2.57
4036 4181 9.155053 GTAAGTCGTTTTAGACAACTGAAAATG 57.845 33.333 0.00 0.00 43.24 2.32
4037 4182 8.885722 TGTAAGTCGTTTTAGACAACTGAAAAT 58.114 29.630 0.00 0.00 43.24 1.82
4038 4183 8.254178 TGTAAGTCGTTTTAGACAACTGAAAA 57.746 30.769 0.00 0.00 43.24 2.29
4039 4184 7.830940 TGTAAGTCGTTTTAGACAACTGAAA 57.169 32.000 0.00 0.00 43.24 2.69
4040 4185 7.830940 TTGTAAGTCGTTTTAGACAACTGAA 57.169 32.000 0.00 0.00 43.24 3.02
4041 4186 7.830940 TTTGTAAGTCGTTTTAGACAACTGA 57.169 32.000 0.00 0.00 43.24 3.41
4042 4187 8.883789 TTTTTGTAAGTCGTTTTAGACAACTG 57.116 30.769 0.00 0.00 43.24 3.16
4043 4188 9.498307 CATTTTTGTAAGTCGTTTTAGACAACT 57.502 29.630 0.00 0.00 43.24 3.16
4044 4189 9.493206 TCATTTTTGTAAGTCGTTTTAGACAAC 57.507 29.630 0.00 0.00 43.24 3.32
4046 4191 9.493206 GTTCATTTTTGTAAGTCGTTTTAGACA 57.507 29.630 0.00 0.00 43.24 3.41
4047 4192 8.667204 CGTTCATTTTTGTAAGTCGTTTTAGAC 58.333 33.333 0.00 0.00 41.23 2.59
4048 4193 7.851963 CCGTTCATTTTTGTAAGTCGTTTTAGA 59.148 33.333 0.00 0.00 0.00 2.10
4049 4194 7.851963 TCCGTTCATTTTTGTAAGTCGTTTTAG 59.148 33.333 0.00 0.00 0.00 1.85
4050 4195 7.692088 TCCGTTCATTTTTGTAAGTCGTTTTA 58.308 30.769 0.00 0.00 0.00 1.52
4051 4196 6.553524 TCCGTTCATTTTTGTAAGTCGTTTT 58.446 32.000 0.00 0.00 0.00 2.43
4052 4197 6.121613 TCCGTTCATTTTTGTAAGTCGTTT 57.878 33.333 0.00 0.00 0.00 3.60
4053 4198 5.277634 CCTCCGTTCATTTTTGTAAGTCGTT 60.278 40.000 0.00 0.00 0.00 3.85
4054 4199 4.212636 CCTCCGTTCATTTTTGTAAGTCGT 59.787 41.667 0.00 0.00 0.00 4.34
4055 4200 4.378046 CCCTCCGTTCATTTTTGTAAGTCG 60.378 45.833 0.00 0.00 0.00 4.18
4056 4201 4.758165 TCCCTCCGTTCATTTTTGTAAGTC 59.242 41.667 0.00 0.00 0.00 3.01
4057 4202 4.721132 TCCCTCCGTTCATTTTTGTAAGT 58.279 39.130 0.00 0.00 0.00 2.24
4058 4203 4.760204 ACTCCCTCCGTTCATTTTTGTAAG 59.240 41.667 0.00 0.00 0.00 2.34
4059 4204 4.721132 ACTCCCTCCGTTCATTTTTGTAA 58.279 39.130 0.00 0.00 0.00 2.41
4060 4205 4.360951 ACTCCCTCCGTTCATTTTTGTA 57.639 40.909 0.00 0.00 0.00 2.41
4061 4206 3.223674 ACTCCCTCCGTTCATTTTTGT 57.776 42.857 0.00 0.00 0.00 2.83
4062 4207 4.324267 ACTACTCCCTCCGTTCATTTTTG 58.676 43.478 0.00 0.00 0.00 2.44
4063 4208 4.635699 ACTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
4064 4209 5.952347 ATACTACTCCCTCCGTTCATTTT 57.048 39.130 0.00 0.00 0.00 1.82
4065 4210 5.952347 AATACTACTCCCTCCGTTCATTT 57.048 39.130 0.00 0.00 0.00 2.32
4066 4211 7.613551 ATTAATACTACTCCCTCCGTTCATT 57.386 36.000 0.00 0.00 0.00 2.57
4067 4212 8.716674 TTATTAATACTACTCCCTCCGTTCAT 57.283 34.615 0.00 0.00 0.00 2.57
4068 4213 8.716674 ATTATTAATACTACTCCCTCCGTTCA 57.283 34.615 0.00 0.00 0.00 3.18
4129 4274 8.781196 GCATGATTATTGAAGTCATACACAGAT 58.219 33.333 0.00 0.00 31.74 2.90
4130 4275 7.769970 TGCATGATTATTGAAGTCATACACAGA 59.230 33.333 0.00 0.00 31.74 3.41
4138 4283 4.038282 GGGCATGCATGATTATTGAAGTCA 59.962 41.667 30.64 0.00 0.00 3.41
4210 4355 5.949354 TGCTTGTGCTAATATACCTGGTTTT 59.051 36.000 3.84 0.00 40.48 2.43
4381 4526 0.987294 ATTATGGGATGGAGGGAGCG 59.013 55.000 0.00 0.00 0.00 5.03
4382 4527 5.667626 TCTTATATTATGGGATGGAGGGAGC 59.332 44.000 0.00 0.00 0.00 4.70
4383 4528 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
4384 4529 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
4385 4530 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
4386 4531 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
4387 4532 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
4388 4533 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
4389 4534 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
4390 4535 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
4391 4536 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
4392 4537 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4393 4538 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4394 4539 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4397 4542 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4398 4543 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
4399 4544 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
4400 4545 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
4401 4546 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
4402 4547 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4403 4548 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
4404 4549 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
4405 4550 5.646467 TTACACTAGTGTCAAAAACGCTC 57.354 39.130 31.11 0.00 45.69 5.03
4427 4572 6.068010 TCCGTCCCATAATATGAGCATTTTT 58.932 36.000 1.10 0.00 0.00 1.94
4428 4573 5.630121 TCCGTCCCATAATATGAGCATTTT 58.370 37.500 1.10 0.00 0.00 1.82
4429 4574 5.241403 TCCGTCCCATAATATGAGCATTT 57.759 39.130 1.10 0.00 0.00 2.32
4430 4575 4.323792 CCTCCGTCCCATAATATGAGCATT 60.324 45.833 1.10 0.00 0.00 3.56
4431 4576 3.198635 CCTCCGTCCCATAATATGAGCAT 59.801 47.826 1.10 0.00 0.00 3.79
4432 4577 2.567169 CCTCCGTCCCATAATATGAGCA 59.433 50.000 1.10 0.00 0.00 4.26
4433 4578 2.093447 CCCTCCGTCCCATAATATGAGC 60.093 54.545 1.10 0.00 0.00 4.26
4434 4579 3.441101 TCCCTCCGTCCCATAATATGAG 58.559 50.000 1.10 0.00 0.00 2.90
4435 4580 3.181410 ACTCCCTCCGTCCCATAATATGA 60.181 47.826 1.10 0.00 0.00 2.15
4436 4581 3.173965 ACTCCCTCCGTCCCATAATATG 58.826 50.000 0.00 0.00 0.00 1.78
4437 4582 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4438 4583 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4439 4584 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4440 4585 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4441 4586 4.474303 TTAATACTCCCTCCGTCCCATA 57.526 45.455 0.00 0.00 0.00 2.74
4442 4587 3.339713 TTAATACTCCCTCCGTCCCAT 57.660 47.619 0.00 0.00 0.00 4.00
4443 4588 2.852714 TTAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4444 4589 3.236896 TCATTAATACTCCCTCCGTCCC 58.763 50.000 0.00 0.00 0.00 4.46
4445 4590 3.896272 ACTCATTAATACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
4446 4591 5.532664 AACTCATTAATACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
4447 4592 6.781014 TGATAACTCATTAATACTCCCTCCGT 59.219 38.462 0.00 0.00 0.00 4.69
4448 4593 7.039644 ACTGATAACTCATTAATACTCCCTCCG 60.040 40.741 0.00 0.00 0.00 4.63
4449 4594 8.196378 ACTGATAACTCATTAATACTCCCTCC 57.804 38.462 0.00 0.00 0.00 4.30
4450 4595 9.699703 GAACTGATAACTCATTAATACTCCCTC 57.300 37.037 0.00 0.00 0.00 4.30
4451 4596 9.213777 TGAACTGATAACTCATTAATACTCCCT 57.786 33.333 0.00 0.00 0.00 4.20
4473 4618 8.535690 AGTTGAACTACTTAGCTTACATGAAC 57.464 34.615 0.00 0.00 0.00 3.18
4477 4622 8.904099 AACAAGTTGAACTACTTAGCTTACAT 57.096 30.769 10.54 0.00 36.24 2.29
4792 4937 7.437748 ACTTGTCTATGCATATACTGGAGTTC 58.562 38.462 19.45 3.68 0.00 3.01
4909 5054 0.108585 AGCCGCAGAAAGTTTCCTCA 59.891 50.000 12.05 0.00 0.00 3.86
5189 5336 4.114058 ACAATTTGATTGGATGCCTTCG 57.886 40.909 2.79 0.00 44.42 3.79
5322 5469 4.296621 GGCTTTCCCTCTACTTTTACCA 57.703 45.455 0.00 0.00 0.00 3.25
5341 5488 2.831526 ACATGTGGACTTTATTTGGGGC 59.168 45.455 0.00 0.00 0.00 5.80
5355 5502 6.147864 TCCTCTTTGAAAAGAAACATGTGG 57.852 37.500 0.00 3.51 43.84 4.17
5418 5566 9.681692 TTTTATCATTCCGCATCATCTATTTTG 57.318 29.630 0.00 0.00 0.00 2.44
5433 5582 7.228308 CCTGAACTCAGATCCTTTTATCATTCC 59.772 40.741 8.33 0.00 46.59 3.01
5449 5598 9.605275 TGTGAGAATAATTATTCCTGAACTCAG 57.395 33.333 27.18 0.00 42.29 3.35
5551 5700 7.358023 GCTTGTGTGGTTTTATGTGTAAATTCG 60.358 37.037 0.00 0.00 30.34 3.34
5581 5730 0.326264 ATCTGAGTTGAAGCGCCCTT 59.674 50.000 2.29 0.00 0.00 3.95
5595 5744 8.877864 AACTGTTCCATATAAAAACCATCTGA 57.122 30.769 0.00 0.00 0.00 3.27
5663 5815 8.934023 TGTAGACCCAATCTTCAAGTTAAAAT 57.066 30.769 0.00 0.00 39.04 1.82
5671 5823 8.877864 ACAATATTTGTAGACCCAATCTTCAA 57.122 30.769 0.00 0.00 43.27 2.69
5715 5867 3.852286 AGACCGCATTACACGATGTTTA 58.148 40.909 0.00 0.00 0.00 2.01
5727 5879 0.537188 ATCCGACTCAAGACCGCATT 59.463 50.000 0.00 0.00 0.00 3.56
5764 5916 4.412207 CGTAAAATACTTGCCAAGCCTTC 58.588 43.478 3.88 0.00 0.00 3.46
5765 5917 3.366985 GCGTAAAATACTTGCCAAGCCTT 60.367 43.478 3.88 0.00 0.00 4.35
5783 5935 2.981805 GCGGTTATCACAATATCGCGTA 59.018 45.455 5.77 0.00 33.74 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.