Multiple sequence alignment - TraesCS1A01G305200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G305200 chr1A 100.000 6579 0 0 839 7417 497868517 497861939 0.000000e+00 12150.0
1 TraesCS1A01G305200 chr1A 100.000 592 0 0 1 592 497869355 497868764 0.000000e+00 1094.0
2 TraesCS1A01G305200 chr1D 95.828 2565 81 17 1837 4385 402325030 402322476 0.000000e+00 4120.0
3 TraesCS1A01G305200 chr1D 95.899 1829 58 7 4385 6202 402322417 402320595 0.000000e+00 2946.0
4 TraesCS1A01G305200 chr1D 89.167 1200 49 31 6245 7417 402320599 402319454 0.000000e+00 1421.0
5 TraesCS1A01G305200 chr1D 87.361 989 83 25 5094 6051 491932893 491931916 0.000000e+00 1096.0
6 TraesCS1A01G305200 chr1D 92.746 579 27 5 1258 1822 402325592 402325015 0.000000e+00 822.0
7 TraesCS1A01G305200 chr1D 93.333 420 21 5 839 1257 402326053 402325640 1.370000e-171 614.0
8 TraesCS1A01G305200 chr1D 85.786 401 42 8 99 498 402326745 402326359 1.930000e-110 411.0
9 TraesCS1A01G305200 chr1D 97.590 83 1 1 508 590 402326206 402326125 2.790000e-29 141.0
10 TraesCS1A01G305200 chr1B 94.802 2578 95 20 1837 4385 540318764 540316197 0.000000e+00 3982.0
11 TraesCS1A01G305200 chr1B 95.201 1521 50 12 4383 5885 540316140 540314625 0.000000e+00 2383.0
12 TraesCS1A01G305200 chr1B 92.229 682 17 12 6223 6900 540314149 540313500 0.000000e+00 933.0
13 TraesCS1A01G305200 chr1B 89.347 582 42 10 1258 1822 540319327 540318749 0.000000e+00 713.0
14 TraesCS1A01G305200 chr1B 94.005 417 18 5 844 1257 540319785 540319373 6.320000e-175 625.0
15 TraesCS1A01G305200 chr1B 88.204 373 38 3 33 404 540334603 540334236 2.460000e-119 440.0
16 TraesCS1A01G305200 chr1B 95.149 268 10 1 5873 6137 540314609 540314342 3.200000e-113 420.0
17 TraesCS1A01G305200 chr1B 86.186 333 19 11 7100 7417 540313503 540313183 1.190000e-87 335.0
18 TraesCS1A01G305200 chr1B 87.952 83 5 1 508 590 540319945 540319868 7.920000e-15 93.5
19 TraesCS1A01G305200 chr1B 96.364 55 2 0 6120 6174 540314200 540314146 2.850000e-14 91.6
20 TraesCS1A01G305200 chr7B 83.436 1455 146 60 5094 6500 716292137 716293544 0.000000e+00 1264.0
21 TraesCS1A01G305200 chr7B 79.812 426 71 8 87 505 577670898 577670481 5.630000e-76 296.0
22 TraesCS1A01G305200 chr3B 92.353 510 35 4 5152 5659 7253389 7253896 0.000000e+00 723.0
23 TraesCS1A01G305200 chr3B 79.529 425 77 5 87 505 776867221 776867641 2.020000e-75 294.0
24 TraesCS1A01G305200 chr7A 83.962 636 60 23 5325 5930 8242253 8241630 8.350000e-159 571.0
25 TraesCS1A01G305200 chr7A 93.133 233 14 2 5094 5324 8242801 8242569 2.560000e-89 340.0
26 TraesCS1A01G305200 chr7A 77.500 600 79 36 5919 6500 8240373 8239812 7.230000e-80 309.0
27 TraesCS1A01G305200 chr7A 81.525 341 50 5 100 433 134983232 134982898 1.230000e-67 268.0
28 TraesCS1A01G305200 chr7D 80.979 531 65 16 2458 2954 411329916 411330444 9.020000e-104 388.0
29 TraesCS1A01G305200 chr5A 86.957 322 36 5 2887 3207 53575502 53575818 2.540000e-94 357.0
30 TraesCS1A01G305200 chr6A 86.728 324 35 6 2887 3207 579372648 579372966 3.290000e-93 353.0
31 TraesCS1A01G305200 chr2A 79.545 484 85 10 30 505 58545902 58546379 4.290000e-87 333.0
32 TraesCS1A01G305200 chr3D 80.387 413 66 6 102 505 581454910 581454504 4.350000e-77 300.0
33 TraesCS1A01G305200 chr3D 80.100 402 63 11 111 505 581022560 581022169 4.380000e-72 283.0
34 TraesCS1A01G305200 chr6B 76.812 414 81 11 98 503 348124602 348124196 1.250000e-52 219.0
35 TraesCS1A01G305200 chr3A 79.793 193 32 6 1834 2021 175936292 175936482 4.670000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G305200 chr1A 497861939 497869355 7416 True 6622.000000 12150 100.000000 1 7417 2 chr1A.!!$R1 7416
1 TraesCS1A01G305200 chr1D 402319454 402326745 7291 True 1496.428571 4120 92.907000 99 7417 7 chr1D.!!$R2 7318
2 TraesCS1A01G305200 chr1D 491931916 491932893 977 True 1096.000000 1096 87.361000 5094 6051 1 chr1D.!!$R1 957
3 TraesCS1A01G305200 chr1B 540313183 540319945 6762 True 1064.011111 3982 92.359444 508 7417 9 chr1B.!!$R2 6909
4 TraesCS1A01G305200 chr7B 716292137 716293544 1407 False 1264.000000 1264 83.436000 5094 6500 1 chr7B.!!$F1 1406
5 TraesCS1A01G305200 chr3B 7253389 7253896 507 False 723.000000 723 92.353000 5152 5659 1 chr3B.!!$F1 507
6 TraesCS1A01G305200 chr7A 8239812 8242801 2989 True 406.666667 571 84.865000 5094 6500 3 chr7A.!!$R2 1406
7 TraesCS1A01G305200 chr7D 411329916 411330444 528 False 388.000000 388 80.979000 2458 2954 1 chr7D.!!$F1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.027586 ACGTGTTTCGAAACTGCTGC 59.972 50.000 33.94 20.08 42.86 5.25 F
445 447 0.326238 AATAGACGGGGCCTTGGAGA 60.326 55.000 0.84 0.00 0.00 3.71 F
1387 1582 0.376152 GCTCCAGACATGATTGCACG 59.624 55.000 0.00 0.00 0.00 5.34 F
2284 2504 0.474184 CAGTGTTCCCCCTTGTGAGT 59.526 55.000 0.00 0.00 0.00 3.41 F
2687 2907 0.800012 GCGGTAAATGTTCCTTCGCA 59.200 50.000 0.00 0.00 41.10 5.10 F
4461 4801 1.009829 GATGCGTCTTAGCCCTTGTG 58.990 55.000 0.00 0.00 36.02 3.33 F
4836 5193 1.004745 TGGTTGGCATCTTCCCTTCTC 59.995 52.381 0.00 0.00 0.00 2.87 F
5051 5411 1.604278 GCTGACACCTCCACTTTGAAC 59.396 52.381 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1405 0.246360 GCGGAAAATGGGGGAAAGTG 59.754 55.000 0.00 0.00 0.00 3.16 R
2269 2489 0.472471 TGACACTCACAAGGGGGAAC 59.528 55.000 0.00 0.00 0.00 3.62 R
2622 2842 3.096092 AGGTTTTGCACAGGAAACAAGA 58.904 40.909 12.47 0.00 37.46 3.02 R
3583 3856 3.323691 CAGGATATATGTTGGACGGGACA 59.676 47.826 0.00 0.00 0.00 4.02 R
4483 4830 0.467290 TGGAAAACAGCACACCCTCC 60.467 55.000 0.00 0.00 0.00 4.30 R
6217 8393 0.317160 CCTACTCCTCGTGCACAACA 59.683 55.000 18.64 0.00 0.00 3.33 R
6218 8394 0.601558 TCCTACTCCTCGTGCACAAC 59.398 55.000 18.64 0.00 0.00 3.32 R
6994 9196 0.181114 TGGCCATCGGAATTCTCAGG 59.819 55.000 0.00 4.16 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.798511 GTGGGTGGAGCTAGGCCC 61.799 72.222 0.00 10.98 41.42 5.80
19 20 3.015145 GGGTGGAGCTAGGCCCAA 61.015 66.667 12.55 0.00 40.76 4.12
20 21 2.592308 GGTGGAGCTAGGCCCAAG 59.408 66.667 0.00 0.00 32.52 3.61
21 22 1.995626 GGTGGAGCTAGGCCCAAGA 60.996 63.158 0.00 0.00 32.52 3.02
22 23 1.222113 GTGGAGCTAGGCCCAAGAC 59.778 63.158 0.00 0.00 32.52 3.01
23 24 1.081092 TGGAGCTAGGCCCAAGACT 59.919 57.895 0.00 0.00 0.00 3.24
24 25 1.267574 TGGAGCTAGGCCCAAGACTG 61.268 60.000 0.00 0.00 0.00 3.51
25 26 1.268283 GGAGCTAGGCCCAAGACTGT 61.268 60.000 0.00 0.00 0.00 3.55
26 27 0.107945 GAGCTAGGCCCAAGACTGTG 60.108 60.000 0.00 0.00 0.00 3.66
27 28 1.078143 GCTAGGCCCAAGACTGTGG 60.078 63.158 0.00 0.00 38.51 4.17
28 29 1.078143 CTAGGCCCAAGACTGTGGC 60.078 63.158 0.00 6.91 44.59 5.01
33 34 4.335647 CCAAGACTGTGGCCGGCT 62.336 66.667 28.56 5.35 0.00 5.52
34 35 3.052082 CAAGACTGTGGCCGGCTG 61.052 66.667 28.56 16.25 0.00 4.85
35 36 3.241530 AAGACTGTGGCCGGCTGA 61.242 61.111 28.56 10.91 0.00 4.26
36 37 2.596851 AAGACTGTGGCCGGCTGAT 61.597 57.895 28.56 7.73 0.00 2.90
37 38 2.809861 AAGACTGTGGCCGGCTGATG 62.810 60.000 28.56 16.61 0.00 3.07
47 48 4.864334 GGCTGATGCGGTCTGGGG 62.864 72.222 0.00 0.00 40.82 4.96
49 50 3.790437 CTGATGCGGTCTGGGGCT 61.790 66.667 0.00 0.00 0.00 5.19
50 51 3.746949 CTGATGCGGTCTGGGGCTC 62.747 68.421 0.00 0.00 0.00 4.70
51 52 3.474570 GATGCGGTCTGGGGCTCT 61.475 66.667 0.00 0.00 0.00 4.09
52 53 3.746949 GATGCGGTCTGGGGCTCTG 62.747 68.421 0.00 0.00 0.00 3.35
55 56 4.154347 CGGTCTGGGGCTCTGCTC 62.154 72.222 0.00 0.00 0.00 4.26
56 57 4.154347 GGTCTGGGGCTCTGCTCG 62.154 72.222 0.00 0.00 0.00 5.03
57 58 4.154347 GTCTGGGGCTCTGCTCGG 62.154 72.222 0.00 0.00 0.00 4.63
68 69 2.359107 TGCTCGGCAGGCTTCAAG 60.359 61.111 0.00 0.00 33.32 3.02
69 70 3.808656 GCTCGGCAGGCTTCAAGC 61.809 66.667 0.00 0.00 41.46 4.01
80 81 2.288961 GCTTCAAGCCATGGATGTTG 57.711 50.000 18.40 15.13 34.48 3.33
81 82 1.134907 GCTTCAAGCCATGGATGTTGG 60.135 52.381 18.40 2.27 34.48 3.77
86 87 3.213264 CCATGGATGTTGGCAGGC 58.787 61.111 5.56 0.00 0.00 4.85
87 88 2.777972 CCATGGATGTTGGCAGGCG 61.778 63.158 5.56 0.00 0.00 5.52
88 89 2.440796 ATGGATGTTGGCAGGCGG 60.441 61.111 0.00 0.00 0.00 6.13
89 90 2.982643 ATGGATGTTGGCAGGCGGA 61.983 57.895 0.00 0.00 0.00 5.54
90 91 3.134127 GGATGTTGGCAGGCGGAC 61.134 66.667 0.00 0.00 0.00 4.79
91 92 3.499737 GATGTTGGCAGGCGGACG 61.500 66.667 0.00 0.00 0.00 4.79
92 93 3.950794 GATGTTGGCAGGCGGACGA 62.951 63.158 0.00 0.00 0.00 4.20
93 94 4.980805 TGTTGGCAGGCGGACGAC 62.981 66.667 3.62 3.62 39.65 4.34
107 108 1.658686 GACGACGACAGGCTGGATCT 61.659 60.000 20.34 0.00 0.00 2.75
108 109 0.393944 ACGACGACAGGCTGGATCTA 60.394 55.000 20.34 0.00 0.00 1.98
121 122 1.122019 GGATCTAGGCGACATGGGGT 61.122 60.000 0.00 0.00 0.00 4.95
154 155 3.201266 TGATAATAAAGGTGGCGGTCCTT 59.799 43.478 3.23 3.23 45.84 3.36
155 156 4.409574 TGATAATAAAGGTGGCGGTCCTTA 59.590 41.667 8.43 0.00 43.50 2.69
157 158 6.270463 TGATAATAAAGGTGGCGGTCCTTATA 59.730 38.462 8.43 4.59 43.50 0.98
168 169 2.349627 CGGTCCTTATACTCTTCTCGCG 60.350 54.545 0.00 0.00 0.00 5.87
169 170 2.617774 GGTCCTTATACTCTTCTCGCGT 59.382 50.000 5.77 0.00 0.00 6.01
222 223 2.607187 GATCTGGTCATCGACGTGTTT 58.393 47.619 0.00 0.00 32.65 2.83
223 224 2.060326 TCTGGTCATCGACGTGTTTC 57.940 50.000 0.00 0.00 32.65 2.78
234 235 0.027586 ACGTGTTTCGAAACTGCTGC 59.972 50.000 33.94 20.08 42.86 5.25
248 249 1.451028 GCTGCCGAAGATCTTGCCT 60.451 57.895 14.00 0.00 0.00 4.75
271 272 3.193691 AGGATAGCGGATAGAATTCGGTG 59.806 47.826 2.67 0.00 36.10 4.94
294 295 1.331756 GCATGTCCATTTCAGCCTACG 59.668 52.381 0.00 0.00 0.00 3.51
324 325 3.488090 GGCGTGCCGTGAAGCTAC 61.488 66.667 0.00 0.00 0.00 3.58
329 330 2.314647 TGCCGTGAAGCTACGTTGC 61.315 57.895 14.34 14.34 42.24 4.17
345 346 0.388659 TTGCTTGTTGACACCATGGC 59.611 50.000 13.04 0.00 0.00 4.40
353 355 0.954938 TGACACCATGGCACATGTCG 60.955 55.000 21.70 0.00 45.62 4.35
360 362 1.375908 TGGCACATGTCGGCTTCTC 60.376 57.895 17.92 0.97 0.00 2.87
361 363 1.375908 GGCACATGTCGGCTTCTCA 60.376 57.895 7.96 0.00 0.00 3.27
366 368 3.612479 GCACATGTCGGCTTCTCAATTTT 60.612 43.478 0.00 0.00 0.00 1.82
367 369 4.379394 GCACATGTCGGCTTCTCAATTTTA 60.379 41.667 0.00 0.00 0.00 1.52
368 370 5.677091 GCACATGTCGGCTTCTCAATTTTAT 60.677 40.000 0.00 0.00 0.00 1.40
369 371 5.740569 CACATGTCGGCTTCTCAATTTTATG 59.259 40.000 0.00 0.00 0.00 1.90
370 372 5.647658 ACATGTCGGCTTCTCAATTTTATGA 59.352 36.000 0.00 0.00 0.00 2.15
371 373 6.319658 ACATGTCGGCTTCTCAATTTTATGAT 59.680 34.615 0.00 0.00 0.00 2.45
372 374 6.122850 TGTCGGCTTCTCAATTTTATGATG 57.877 37.500 0.00 0.00 0.00 3.07
373 375 5.647658 TGTCGGCTTCTCAATTTTATGATGT 59.352 36.000 0.00 0.00 0.00 3.06
374 376 6.821160 TGTCGGCTTCTCAATTTTATGATGTA 59.179 34.615 0.00 0.00 0.00 2.29
375 377 7.498900 TGTCGGCTTCTCAATTTTATGATGTAT 59.501 33.333 0.00 0.00 0.00 2.29
376 378 8.988934 GTCGGCTTCTCAATTTTATGATGTATA 58.011 33.333 0.00 0.00 0.00 1.47
396 398 3.978272 CACAGCTGTGGAGAAGGC 58.022 61.111 34.65 0.00 42.10 4.35
398 400 2.435586 CAGCTGTGGAGAAGGCCG 60.436 66.667 5.25 0.00 0.00 6.13
414 416 3.064079 CCGTGATGGCTGAAATCGA 57.936 52.632 0.00 0.00 0.00 3.59
417 419 1.328680 CGTGATGGCTGAAATCGAAGG 59.671 52.381 0.00 0.00 0.00 3.46
433 435 7.932120 AATCGAAGGATCAGTTAAATAGACG 57.068 36.000 0.00 0.00 30.81 4.18
437 439 3.071167 AGGATCAGTTAAATAGACGGGGC 59.929 47.826 0.00 0.00 0.00 5.80
440 442 2.841881 TCAGTTAAATAGACGGGGCCTT 59.158 45.455 0.84 0.00 0.00 4.35
445 447 0.326238 AATAGACGGGGCCTTGGAGA 60.326 55.000 0.84 0.00 0.00 3.71
446 448 0.326238 ATAGACGGGGCCTTGGAGAA 60.326 55.000 0.84 0.00 0.00 2.87
448 450 2.203938 ACGGGGCCTTGGAGAAGA 60.204 61.111 0.84 0.00 0.00 2.87
449 451 1.616628 ACGGGGCCTTGGAGAAGAT 60.617 57.895 0.84 0.00 0.00 2.40
451 453 1.626356 CGGGGCCTTGGAGAAGATGA 61.626 60.000 0.84 0.00 0.00 2.92
452 454 0.625849 GGGGCCTTGGAGAAGATGAA 59.374 55.000 0.84 0.00 0.00 2.57
454 456 2.358615 GGGGCCTTGGAGAAGATGAAAT 60.359 50.000 0.84 0.00 0.00 2.17
477 479 8.548880 AATCAGCTAGGTATTTGGTAACTCTA 57.451 34.615 0.00 0.00 31.28 2.43
479 481 8.370266 TCAGCTAGGTATTTGGTAACTCTAAA 57.630 34.615 0.00 0.00 31.28 1.85
495 497 4.640201 ACTCTAAAAAGCAGCAGTGTCAAA 59.360 37.500 0.00 0.00 0.00 2.69
498 500 2.806608 AAAGCAGCAGTGTCAAATGG 57.193 45.000 0.00 0.00 0.00 3.16
499 501 0.963962 AAGCAGCAGTGTCAAATGGG 59.036 50.000 0.00 0.00 0.00 4.00
500 502 0.896940 AGCAGCAGTGTCAAATGGGG 60.897 55.000 0.00 0.00 0.00 4.96
501 503 1.880819 GCAGCAGTGTCAAATGGGGG 61.881 60.000 0.00 0.00 0.00 5.40
502 504 1.607467 AGCAGTGTCAAATGGGGGC 60.607 57.895 0.00 0.00 0.00 5.80
503 505 2.993471 GCAGTGTCAAATGGGGGCG 61.993 63.158 0.00 0.00 0.00 6.13
505 507 2.282887 GTGTCAAATGGGGGCGGT 60.283 61.111 0.00 0.00 0.00 5.68
590 735 3.925090 CCCGTAGCCATCCGTCCC 61.925 72.222 0.00 0.00 0.00 4.46
1037 1182 2.202690 CTTCCATGGCGCGACGTA 60.203 61.111 12.10 0.00 0.00 3.57
1086 1233 1.141185 TGATCTCTCCCGCCTCTCTA 58.859 55.000 0.00 0.00 0.00 2.43
1096 1243 3.118371 TCCCGCCTCTCTATTTTTCTTCC 60.118 47.826 0.00 0.00 0.00 3.46
1115 1262 7.961325 TCTTCCATTTCTTTTAATTTGGTGC 57.039 32.000 0.00 0.00 0.00 5.01
1116 1263 7.734942 TCTTCCATTTCTTTTAATTTGGTGCT 58.265 30.769 0.00 0.00 0.00 4.40
1117 1264 7.656948 TCTTCCATTTCTTTTAATTTGGTGCTG 59.343 33.333 0.00 0.00 0.00 4.41
1118 1265 6.825610 TCCATTTCTTTTAATTTGGTGCTGT 58.174 32.000 0.00 0.00 0.00 4.40
1119 1266 7.957002 TCCATTTCTTTTAATTTGGTGCTGTA 58.043 30.769 0.00 0.00 0.00 2.74
1120 1267 8.592809 TCCATTTCTTTTAATTTGGTGCTGTAT 58.407 29.630 0.00 0.00 0.00 2.29
1121 1268 9.868277 CCATTTCTTTTAATTTGGTGCTGTATA 57.132 29.630 0.00 0.00 0.00 1.47
1124 1271 8.925161 TTCTTTTAATTTGGTGCTGTATATGC 57.075 30.769 0.00 0.00 0.00 3.14
1125 1272 7.192913 TCTTTTAATTTGGTGCTGTATATGCG 58.807 34.615 0.00 0.00 0.00 4.73
1257 1404 1.956170 CATCGGCCGCATAGGTGTC 60.956 63.158 23.51 0.00 43.70 3.67
1258 1405 3.165160 ATCGGCCGCATAGGTGTCC 62.165 63.158 23.51 0.00 43.70 4.02
1259 1406 4.155733 CGGCCGCATAGGTGTCCA 62.156 66.667 14.67 0.00 43.70 4.02
1261 1408 2.584608 GCCGCATAGGTGTCCACT 59.415 61.111 0.00 0.00 43.70 4.00
1262 1409 1.078426 GCCGCATAGGTGTCCACTT 60.078 57.895 0.00 0.00 43.70 3.16
1264 1411 1.369625 CCGCATAGGTGTCCACTTTC 58.630 55.000 0.00 0.00 34.51 2.62
1364 1559 3.057806 GCTTTGCTTCCGCCTAGTTTTAA 60.058 43.478 0.00 0.00 34.43 1.52
1386 1581 1.400846 CTGCTCCAGACATGATTGCAC 59.599 52.381 0.00 0.00 32.44 4.57
1387 1582 0.376152 GCTCCAGACATGATTGCACG 59.624 55.000 0.00 0.00 0.00 5.34
1390 1585 3.461061 CTCCAGACATGATTGCACGTAT 58.539 45.455 0.00 0.00 0.00 3.06
1395 1601 5.334337 CCAGACATGATTGCACGTATTATGG 60.334 44.000 0.00 0.00 0.00 2.74
1520 1733 6.203723 GTGATTTCCATGTAGTTGAGCTATCC 59.796 42.308 0.00 0.00 31.50 2.59
1530 1743 2.281539 TGAGCTATCCATGCATTGGG 57.718 50.000 13.17 6.10 46.45 4.12
1536 1749 3.057033 GCTATCCATGCATTGGGATGTTC 60.057 47.826 22.77 11.34 46.45 3.18
1576 1791 6.492772 ACCTTAGCTTATATAGTGTACGGCTT 59.507 38.462 0.00 0.00 0.00 4.35
1588 1803 6.535274 AGTGTACGGCTTTAGTTAAAACAG 57.465 37.500 0.00 0.00 0.00 3.16
1653 1868 8.776061 AGCAGAGGACTAATTATACTTCTCTT 57.224 34.615 0.00 0.00 0.00 2.85
1690 1905 9.512435 CATATGTTTGATCTCAAGTTGAAATCC 57.488 33.333 15.08 2.67 37.15 3.01
1701 1916 7.723616 TCTCAAGTTGAAATCCCATAAGTTGAA 59.276 33.333 7.06 0.00 40.15 2.69
1756 1971 9.129209 CACATCGATGTACTGTAATAGGTTATG 57.871 37.037 29.52 8.35 39.39 1.90
1823 2038 7.034685 GTGGAACAAACAAATAGTTACCTGT 57.965 36.000 0.00 0.00 44.16 4.00
1824 2039 7.136772 GTGGAACAAACAAATAGTTACCTGTC 58.863 38.462 0.00 0.00 44.16 3.51
1825 2040 6.263617 TGGAACAAACAAATAGTTACCTGTCC 59.736 38.462 0.00 0.00 40.26 4.02
1826 2041 6.489022 GGAACAAACAAATAGTTACCTGTCCT 59.511 38.462 0.00 0.00 40.26 3.85
1827 2042 7.662669 GGAACAAACAAATAGTTACCTGTCCTA 59.337 37.037 0.00 0.00 40.26 2.94
1828 2043 8.983702 AACAAACAAATAGTTACCTGTCCTAA 57.016 30.769 0.00 0.00 40.26 2.69
1829 2044 8.983702 ACAAACAAATAGTTACCTGTCCTAAA 57.016 30.769 0.00 0.00 40.26 1.85
1830 2045 9.411189 ACAAACAAATAGTTACCTGTCCTAAAA 57.589 29.630 0.00 0.00 40.26 1.52
1996 2213 2.681344 TGCTAACATGATTGCTGCTCAG 59.319 45.455 10.40 0.00 0.00 3.35
2040 2257 5.947228 ACTCCACACAGTTAATCATGTTG 57.053 39.130 0.00 0.00 0.00 3.33
2056 2273 8.889849 AATCATGTTGTTTATTACAGTTACGC 57.110 30.769 0.00 0.00 38.19 4.42
2245 2465 6.927416 TGTAGGTGTATCTATTGTCGTGTTT 58.073 36.000 0.00 0.00 0.00 2.83
2251 2471 8.540492 GGTGTATCTATTGTCGTGTTTAATCAG 58.460 37.037 0.00 0.00 0.00 2.90
2284 2504 0.474184 CAGTGTTCCCCCTTGTGAGT 59.526 55.000 0.00 0.00 0.00 3.41
2500 2720 3.202818 ACCAGAGAATAATGCCACATCCA 59.797 43.478 0.00 0.00 0.00 3.41
2622 2842 3.620488 TGGTCTTGTTGAAACTCTGCTT 58.380 40.909 0.00 0.00 0.00 3.91
2687 2907 0.800012 GCGGTAAATGTTCCTTCGCA 59.200 50.000 0.00 0.00 41.10 5.10
2689 2909 1.801771 CGGTAAATGTTCCTTCGCACA 59.198 47.619 0.00 0.00 0.00 4.57
2751 2978 5.450376 AACGTTAGTTATGAACATCAGCG 57.550 39.130 0.00 0.00 39.11 5.18
2752 2979 3.306166 ACGTTAGTTATGAACATCAGCGC 59.694 43.478 0.00 0.00 0.00 5.92
2789 3016 9.541143 TTTCAAAAGTAATTGATTTCCCTTCAC 57.459 29.630 0.00 0.00 38.98 3.18
2810 3037 4.706476 CACCAAAAGCTGATAATTGAGGGA 59.294 41.667 0.00 0.00 0.00 4.20
3027 3296 7.519032 TTTCCGGAACTACTTCATCATTTTT 57.481 32.000 18.64 0.00 0.00 1.94
3115 3384 6.149308 TGTTGAATCCTGCATTACAGTACTTG 59.851 38.462 0.00 0.00 45.68 3.16
3542 3815 8.652810 AACCAAAATTGAAAAGAGAACTCATG 57.347 30.769 4.64 0.00 0.00 3.07
3543 3816 8.010733 ACCAAAATTGAAAAGAGAACTCATGA 57.989 30.769 0.00 0.00 0.00 3.07
3545 3818 9.485206 CCAAAATTGAAAAGAGAACTCATGATT 57.515 29.630 0.00 0.00 0.00 2.57
3603 3876 3.864921 GCTGTCCCGTCCAACATATATCC 60.865 52.174 0.00 0.00 0.00 2.59
3604 3877 3.578716 CTGTCCCGTCCAACATATATCCT 59.421 47.826 0.00 0.00 0.00 3.24
3608 3881 3.557054 CCCGTCCAACATATATCCTGTGG 60.557 52.174 0.00 0.00 0.00 4.17
4008 4281 6.206048 CAGATATTTCATTGCTGCCATACTCA 59.794 38.462 0.00 0.00 0.00 3.41
4116 4389 7.173218 ACACCTACTGAACTTTGTATGAATGTG 59.827 37.037 0.00 0.00 0.00 3.21
4238 4517 9.695526 TCTTCTAAAACACATTTAGCGTTACTA 57.304 29.630 3.63 0.00 46.71 1.82
4277 4556 9.132521 CAAAATGAACTATTGCTCCAGTAAAAG 57.867 33.333 0.00 0.00 0.00 2.27
4303 4584 7.839680 AAGGGACCATTTTACCATATCAATC 57.160 36.000 0.00 0.00 0.00 2.67
4441 4781 2.470990 TGTGGACTGATGCTGGTAGAT 58.529 47.619 0.00 0.00 0.00 1.98
4461 4801 1.009829 GATGCGTCTTAGCCCTTGTG 58.990 55.000 0.00 0.00 36.02 3.33
4483 4830 1.558233 AAGACCCCTAGAACCAGACG 58.442 55.000 0.00 0.00 0.00 4.18
4637 4987 1.066002 TGCTCTGTGCTTTTTCAGTGC 59.934 47.619 10.78 10.78 45.38 4.40
4646 4996 4.078537 TGCTTTTTCAGTGCCTATGCTTA 58.921 39.130 0.00 0.00 38.71 3.09
4777 5134 2.876368 AATGGCTGCACGGCTAGGTC 62.876 60.000 0.50 0.00 39.32 3.85
4836 5193 1.004745 TGGTTGGCATCTTCCCTTCTC 59.995 52.381 0.00 0.00 0.00 2.87
4933 5290 3.983044 ACTTATTTCGAAGTCAGGCCT 57.017 42.857 0.00 0.00 34.48 5.19
4934 5291 3.863041 ACTTATTTCGAAGTCAGGCCTC 58.137 45.455 0.00 0.00 34.48 4.70
4935 5292 3.515901 ACTTATTTCGAAGTCAGGCCTCT 59.484 43.478 0.00 0.00 34.48 3.69
4984 5344 9.683069 GCCAACTTATTATCCATGTCTTTAATG 57.317 33.333 0.00 0.00 0.00 1.90
5051 5411 1.604278 GCTGACACCTCCACTTTGAAC 59.396 52.381 0.00 0.00 0.00 3.18
5169 5529 8.863872 ACTTTAGTTACCTGTAAGATGCAATT 57.136 30.769 0.00 0.00 34.07 2.32
5202 5563 4.789012 ATATTTGTGTTTCTGGGTGCTG 57.211 40.909 0.00 0.00 0.00 4.41
5399 6077 2.789409 ACTGCAGGTATGGTTCCTTC 57.211 50.000 19.93 0.00 32.37 3.46
6126 8143 7.065216 AGTTCATTATCACAACGAGAACATG 57.935 36.000 0.00 0.00 37.07 3.21
6200 8376 5.144359 CACAATGTCAAACTAAGCCGTAAC 58.856 41.667 0.00 0.00 0.00 2.50
6205 8381 4.039004 TGTCAAACTAAGCCGTAACTGGTA 59.961 41.667 0.00 0.00 0.00 3.25
6208 8384 6.148315 GTCAAACTAAGCCGTAACTGGTAATT 59.852 38.462 0.00 0.00 0.00 1.40
6209 8385 7.331687 GTCAAACTAAGCCGTAACTGGTAATTA 59.668 37.037 0.00 0.00 0.00 1.40
6210 8386 8.042515 TCAAACTAAGCCGTAACTGGTAATTAT 58.957 33.333 0.00 0.00 0.00 1.28
6211 8387 9.316730 CAAACTAAGCCGTAACTGGTAATTATA 57.683 33.333 0.00 0.00 0.00 0.98
6228 8404 8.078959 GTAATTATACCATATGTTGTGCACGA 57.921 34.615 13.13 7.71 0.00 4.35
6229 8405 6.785488 ATTATACCATATGTTGTGCACGAG 57.215 37.500 13.13 0.00 0.00 4.18
6230 8406 1.737838 ACCATATGTTGTGCACGAGG 58.262 50.000 13.13 9.95 0.00 4.63
6231 8407 1.277842 ACCATATGTTGTGCACGAGGA 59.722 47.619 13.13 0.00 0.00 3.71
6232 8408 1.935873 CCATATGTTGTGCACGAGGAG 59.064 52.381 13.13 0.00 0.00 3.69
6233 8409 2.621338 CATATGTTGTGCACGAGGAGT 58.379 47.619 13.13 0.00 0.00 3.85
6315 8492 1.027792 TCCCGTTTTATCCTTGGCGC 61.028 55.000 0.00 0.00 0.00 6.53
6323 8500 1.191535 TATCCTTGGCGCGGCTATAT 58.808 50.000 33.23 22.07 0.00 0.86
6324 8501 1.191535 ATCCTTGGCGCGGCTATATA 58.808 50.000 33.23 15.21 0.00 0.86
6325 8502 1.191535 TCCTTGGCGCGGCTATATAT 58.808 50.000 33.23 0.00 0.00 0.86
6326 8503 2.380941 TCCTTGGCGCGGCTATATATA 58.619 47.619 33.23 8.54 0.00 0.86
6422 8615 2.403987 CTTCGCAGCTGAGCATGC 59.596 61.111 20.43 10.51 39.09 4.06
6424 8617 1.715862 CTTCGCAGCTGAGCATGCAT 61.716 55.000 20.43 4.75 42.68 3.96
6425 8618 1.988834 TTCGCAGCTGAGCATGCATG 61.989 55.000 22.70 22.70 42.68 4.06
6452 8645 9.444534 CATGCATGTATATTCTCGTAGATAGTC 57.555 37.037 18.91 0.00 33.89 2.59
6454 8647 8.669243 TGCATGTATATTCTCGTAGATAGTCTG 58.331 37.037 0.00 0.00 33.89 3.51
6571 8768 5.769662 ACCAGACTGATCTTTAACAATGCAA 59.230 36.000 3.32 0.00 30.42 4.08
6572 8769 6.088824 CCAGACTGATCTTTAACAATGCAAC 58.911 40.000 3.32 0.00 30.42 4.17
6573 8770 6.088824 CAGACTGATCTTTAACAATGCAACC 58.911 40.000 0.00 0.00 30.42 3.77
6574 8771 6.006449 AGACTGATCTTTAACAATGCAACCT 58.994 36.000 0.00 0.00 0.00 3.50
6575 8772 6.491403 AGACTGATCTTTAACAATGCAACCTT 59.509 34.615 0.00 0.00 0.00 3.50
6605 8802 5.745294 GCACAAGAATGGCATATTGTACAAG 59.255 40.000 22.94 15.18 34.26 3.16
6615 8812 6.317642 TGGCATATTGTACAAGCGAATAAACT 59.682 34.615 14.65 0.00 0.00 2.66
6759 8959 2.695359 GCTTGTACCAGACGAATGGAA 58.305 47.619 15.90 1.59 43.57 3.53
6896 9096 2.438975 AGCCGGCACATCCACATG 60.439 61.111 31.54 0.00 35.92 3.21
6897 9097 2.438254 GCCGGCACATCCACATGA 60.438 61.111 24.80 0.00 33.72 3.07
6899 9099 1.996786 GCCGGCACATCCACATGAAG 61.997 60.000 24.80 0.00 33.72 3.02
6900 9100 1.430632 CGGCACATCCACATGAAGC 59.569 57.895 0.00 0.00 35.32 3.86
6935 9137 1.447317 AACTGCAACCTGACAAGCCG 61.447 55.000 0.00 0.00 0.00 5.52
6946 9148 2.932663 ACAAGCCGTTGTCATCCTG 58.067 52.632 0.00 0.00 43.88 3.86
6947 9149 1.237285 ACAAGCCGTTGTCATCCTGC 61.237 55.000 0.00 0.00 43.88 4.85
6963 9165 1.198713 CTGCTTCCTCCAGGCTTCTA 58.801 55.000 0.00 0.00 34.44 2.10
6964 9166 1.138661 CTGCTTCCTCCAGGCTTCTAG 59.861 57.143 0.00 0.00 34.44 2.43
6966 9168 2.292257 TGCTTCCTCCAGGCTTCTAGTA 60.292 50.000 0.00 0.00 34.44 1.82
6994 9196 1.602377 ACGTTGGCAGTAGCAAGAAAC 59.398 47.619 0.00 0.00 44.61 2.78
6996 9198 2.230660 GTTGGCAGTAGCAAGAAACCT 58.769 47.619 0.00 0.00 44.61 3.50
7027 9229 4.832608 GCCAGTACCCCGAAGCCG 62.833 72.222 0.00 0.00 0.00 5.52
7053 9255 0.604780 CAGCCACAGTTGTCCTGGAG 60.605 60.000 0.00 0.00 46.06 3.86
7083 9285 2.099921 TGATCGTGCTAGAGAAGAAGCC 59.900 50.000 0.00 0.00 37.97 4.35
7138 9344 2.080654 AGAGCTCCTTATTCTCCGCT 57.919 50.000 10.93 0.00 0.00 5.52
7139 9345 3.231207 AGAGCTCCTTATTCTCCGCTA 57.769 47.619 10.93 0.00 0.00 4.26
7213 9432 1.028905 CCCAGAGCCTAGAGAAGACG 58.971 60.000 0.00 0.00 0.00 4.18
7214 9433 1.028905 CCAGAGCCTAGAGAAGACGG 58.971 60.000 0.00 0.00 0.00 4.79
7215 9434 1.408961 CCAGAGCCTAGAGAAGACGGA 60.409 57.143 0.00 0.00 0.00 4.69
7216 9435 1.673920 CAGAGCCTAGAGAAGACGGAC 59.326 57.143 0.00 0.00 0.00 4.79
7239 9458 1.225704 CACCCTGGGGAGAGATTGC 59.774 63.158 18.88 0.00 38.96 3.56
7248 9467 2.421619 GGGAGAGATTGCCATCGAATC 58.578 52.381 0.00 0.00 37.22 2.52
7249 9468 2.224378 GGGAGAGATTGCCATCGAATCA 60.224 50.000 0.00 0.00 37.22 2.57
7261 9480 3.425359 CCATCGAATCAGACACTTTGTGC 60.425 47.826 0.00 0.00 36.98 4.57
7265 9490 0.870393 ATCAGACACTTTGTGCAGCG 59.130 50.000 0.00 0.00 36.98 5.18
7282 9507 2.860735 CAGCGGAAAGTGTCAGTATAGC 59.139 50.000 0.00 0.00 0.00 2.97
7283 9508 2.761208 AGCGGAAAGTGTCAGTATAGCT 59.239 45.455 0.00 0.00 0.00 3.32
7284 9509 3.952323 AGCGGAAAGTGTCAGTATAGCTA 59.048 43.478 0.00 0.00 0.00 3.32
7285 9510 4.036971 AGCGGAAAGTGTCAGTATAGCTAG 59.963 45.833 0.00 0.00 0.00 3.42
7299 9524 2.725221 AGCTAGCCATTCCCTGAAAG 57.275 50.000 12.13 0.00 0.00 2.62
7328 9553 5.124457 GCATGAATGGTGTTCAGATAACTGT 59.876 40.000 0.00 0.00 43.81 3.55
7337 9562 6.038271 GGTGTTCAGATAACTGTTGACTTTGT 59.962 38.462 2.69 0.00 43.81 2.83
7338 9563 7.225931 GGTGTTCAGATAACTGTTGACTTTGTA 59.774 37.037 2.69 0.00 43.81 2.41
7339 9564 8.276325 GTGTTCAGATAACTGTTGACTTTGTAG 58.724 37.037 2.69 0.00 43.81 2.74
7340 9565 7.042051 TGTTCAGATAACTGTTGACTTTGTAGC 60.042 37.037 2.69 0.00 43.81 3.58
7408 9633 2.906389 AGCACTGACCAAGGTGAAGATA 59.094 45.455 0.00 0.00 35.69 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.798511 GGGCCTAGCTCCACCCAC 61.799 72.222 0.84 0.00 42.33 4.61
2 3 3.015145 TTGGGCCTAGCTCCACCC 61.015 66.667 4.53 10.28 43.14 4.61
3 4 1.995626 TCTTGGGCCTAGCTCCACC 60.996 63.158 10.34 0.00 30.91 4.61
4 5 1.222113 GTCTTGGGCCTAGCTCCAC 59.778 63.158 10.34 0.00 30.91 4.02
5 6 1.081092 AGTCTTGGGCCTAGCTCCA 59.919 57.895 10.34 0.00 0.00 3.86
6 7 1.268283 ACAGTCTTGGGCCTAGCTCC 61.268 60.000 10.34 0.99 0.00 4.70
7 8 0.107945 CACAGTCTTGGGCCTAGCTC 60.108 60.000 10.34 6.07 0.00 4.09
8 9 1.557269 CCACAGTCTTGGGCCTAGCT 61.557 60.000 10.34 7.97 32.35 3.32
9 10 1.078143 CCACAGTCTTGGGCCTAGC 60.078 63.158 10.34 5.78 32.35 3.42
10 11 1.078143 GCCACAGTCTTGGGCCTAG 60.078 63.158 8.84 8.84 41.90 3.02
11 12 3.077907 GCCACAGTCTTGGGCCTA 58.922 61.111 4.53 0.00 41.90 3.93
16 17 4.335647 AGCCGGCCACAGTCTTGG 62.336 66.667 26.15 0.00 39.98 3.61
17 18 2.809861 ATCAGCCGGCCACAGTCTTG 62.810 60.000 26.15 12.71 0.00 3.02
18 19 2.596851 ATCAGCCGGCCACAGTCTT 61.597 57.895 26.15 0.00 0.00 3.01
19 20 3.005539 ATCAGCCGGCCACAGTCT 61.006 61.111 26.15 0.00 0.00 3.24
20 21 2.821366 CATCAGCCGGCCACAGTC 60.821 66.667 26.15 0.00 0.00 3.51
30 31 4.864334 CCCCAGACCGCATCAGCC 62.864 72.222 0.00 0.00 37.52 4.85
32 33 3.746949 GAGCCCCAGACCGCATCAG 62.747 68.421 0.00 0.00 0.00 2.90
33 34 3.785859 GAGCCCCAGACCGCATCA 61.786 66.667 0.00 0.00 0.00 3.07
34 35 3.474570 AGAGCCCCAGACCGCATC 61.475 66.667 0.00 0.00 0.00 3.91
35 36 3.790437 CAGAGCCCCAGACCGCAT 61.790 66.667 0.00 0.00 0.00 4.73
38 39 4.154347 GAGCAGAGCCCCAGACCG 62.154 72.222 0.00 0.00 0.00 4.79
39 40 4.154347 CGAGCAGAGCCCCAGACC 62.154 72.222 0.00 0.00 0.00 3.85
40 41 4.154347 CCGAGCAGAGCCCCAGAC 62.154 72.222 0.00 0.00 0.00 3.51
51 52 2.359107 CTTGAAGCCTGCCGAGCA 60.359 61.111 0.00 0.00 36.92 4.26
52 53 3.808656 GCTTGAAGCCTGCCGAGC 61.809 66.667 5.74 0.00 34.48 5.03
61 62 1.134907 CCAACATCCATGGCTTGAAGC 60.135 52.381 18.21 9.04 41.46 3.86
62 63 2.953466 CCAACATCCATGGCTTGAAG 57.047 50.000 18.21 10.87 0.00 3.02
69 70 2.777972 CGCCTGCCAACATCCATGG 61.778 63.158 4.97 4.97 41.08 3.66
70 71 2.777972 CCGCCTGCCAACATCCATG 61.778 63.158 0.00 0.00 0.00 3.66
71 72 2.440796 CCGCCTGCCAACATCCAT 60.441 61.111 0.00 0.00 0.00 3.41
72 73 3.645660 TCCGCCTGCCAACATCCA 61.646 61.111 0.00 0.00 0.00 3.41
73 74 3.134127 GTCCGCCTGCCAACATCC 61.134 66.667 0.00 0.00 0.00 3.51
74 75 3.499737 CGTCCGCCTGCCAACATC 61.500 66.667 0.00 0.00 0.00 3.06
75 76 4.015406 TCGTCCGCCTGCCAACAT 62.015 61.111 0.00 0.00 0.00 2.71
76 77 4.980805 GTCGTCCGCCTGCCAACA 62.981 66.667 0.00 0.00 0.00 3.33
82 83 4.778415 CCTGTCGTCGTCCGCCTG 62.778 72.222 0.00 0.00 36.19 4.85
86 87 4.778415 CCAGCCTGTCGTCGTCCG 62.778 72.222 0.00 0.00 38.13 4.79
87 88 2.615262 GATCCAGCCTGTCGTCGTCC 62.615 65.000 0.00 0.00 0.00 4.79
88 89 1.226717 GATCCAGCCTGTCGTCGTC 60.227 63.158 0.00 0.00 0.00 4.20
89 90 0.393944 TAGATCCAGCCTGTCGTCGT 60.394 55.000 0.00 0.00 0.00 4.34
90 91 0.309302 CTAGATCCAGCCTGTCGTCG 59.691 60.000 0.00 0.00 0.00 5.12
91 92 0.671251 CCTAGATCCAGCCTGTCGTC 59.329 60.000 0.00 0.00 0.00 4.20
92 93 1.395826 GCCTAGATCCAGCCTGTCGT 61.396 60.000 0.00 0.00 0.00 4.34
93 94 1.365633 GCCTAGATCCAGCCTGTCG 59.634 63.158 0.00 0.00 0.00 4.35
94 95 1.109920 TCGCCTAGATCCAGCCTGTC 61.110 60.000 0.00 0.00 0.00 3.51
95 96 1.075970 TCGCCTAGATCCAGCCTGT 60.076 57.895 0.00 0.00 0.00 4.00
96 97 1.365633 GTCGCCTAGATCCAGCCTG 59.634 63.158 0.00 0.00 0.00 4.85
97 98 0.470833 ATGTCGCCTAGATCCAGCCT 60.471 55.000 0.00 0.00 0.00 4.58
107 108 2.063979 CAGGACCCCATGTCGCCTA 61.064 63.158 0.00 0.00 45.46 3.93
108 109 3.402681 CAGGACCCCATGTCGCCT 61.403 66.667 0.00 0.00 45.46 5.52
121 122 3.466836 CTTTATTATCACGGCAGCAGGA 58.533 45.455 0.00 0.00 0.00 3.86
154 155 2.543641 TCGTGACGCGAGAAGAGTATA 58.456 47.619 15.93 0.00 45.68 1.47
155 156 1.366679 TCGTGACGCGAGAAGAGTAT 58.633 50.000 15.93 0.00 45.68 2.12
157 158 3.651645 TCGTGACGCGAGAAGAGT 58.348 55.556 15.93 0.00 45.68 3.24
168 169 1.129251 CATGCAGGATGTTGTCGTGAC 59.871 52.381 0.00 0.00 43.67 3.67
169 170 1.001860 TCATGCAGGATGTTGTCGTGA 59.998 47.619 0.00 0.00 43.67 4.35
205 206 0.708370 CGAAACACGTCGATGACCAG 59.292 55.000 12.58 0.82 43.86 4.00
222 223 0.037326 ATCTTCGGCAGCAGTTTCGA 60.037 50.000 0.00 0.00 0.00 3.71
223 224 0.371645 GATCTTCGGCAGCAGTTTCG 59.628 55.000 0.00 0.00 0.00 3.46
225 226 1.808945 CAAGATCTTCGGCAGCAGTTT 59.191 47.619 4.57 0.00 0.00 2.66
234 235 3.367910 GCTATCCTAGGCAAGATCTTCGG 60.368 52.174 4.57 0.00 0.00 4.30
248 249 4.398358 CACCGAATTCTATCCGCTATCCTA 59.602 45.833 3.52 0.00 0.00 2.94
271 272 0.174162 GGCTGAAATGGACATGCACC 59.826 55.000 0.00 0.00 0.00 5.01
313 314 4.261888 AGCAACGTAGCTTCACGG 57.738 55.556 13.27 0.00 43.70 4.94
324 325 1.600164 CCATGGTGTCAACAAGCAACG 60.600 52.381 2.57 0.00 0.00 4.10
329 330 1.031235 TGTGCCATGGTGTCAACAAG 58.969 50.000 14.67 0.00 0.00 3.16
345 346 3.837213 AAATTGAGAAGCCGACATGTG 57.163 42.857 1.15 0.00 0.00 3.21
366 368 7.669722 TCTCCACAGCTGTGTATATACATCATA 59.330 37.037 37.55 11.17 44.21 2.15
367 369 6.494835 TCTCCACAGCTGTGTATATACATCAT 59.505 38.462 37.55 1.89 44.21 2.45
368 370 5.833131 TCTCCACAGCTGTGTATATACATCA 59.167 40.000 37.55 15.58 44.21 3.07
369 371 6.332735 TCTCCACAGCTGTGTATATACATC 57.667 41.667 37.55 12.27 44.21 3.06
370 372 6.239430 CCTTCTCCACAGCTGTGTATATACAT 60.239 42.308 37.55 3.12 44.21 2.29
371 373 5.069119 CCTTCTCCACAGCTGTGTATATACA 59.931 44.000 37.55 18.01 44.21 2.29
372 374 5.533482 CCTTCTCCACAGCTGTGTATATAC 58.467 45.833 37.55 5.89 44.21 1.47
373 375 4.039245 GCCTTCTCCACAGCTGTGTATATA 59.961 45.833 37.55 21.05 44.21 0.86
374 376 3.181461 GCCTTCTCCACAGCTGTGTATAT 60.181 47.826 37.55 6.26 44.21 0.86
375 377 2.168521 GCCTTCTCCACAGCTGTGTATA 59.831 50.000 37.55 24.31 44.21 1.47
376 378 1.065854 GCCTTCTCCACAGCTGTGTAT 60.066 52.381 37.55 7.45 44.21 2.29
382 384 2.925170 ACGGCCTTCTCCACAGCT 60.925 61.111 0.00 0.00 0.00 4.24
396 398 1.328680 CTTCGATTTCAGCCATCACGG 59.671 52.381 0.00 0.00 38.11 4.94
398 400 2.632377 TCCTTCGATTTCAGCCATCAC 58.368 47.619 0.00 0.00 0.00 3.06
409 411 6.924060 CCGTCTATTTAACTGATCCTTCGATT 59.076 38.462 0.00 0.00 0.00 3.34
414 416 4.444449 GCCCCGTCTATTTAACTGATCCTT 60.444 45.833 0.00 0.00 0.00 3.36
417 419 3.071167 AGGCCCCGTCTATTTAACTGATC 59.929 47.826 0.00 0.00 0.00 2.92
433 435 0.625849 TTCATCTTCTCCAAGGCCCC 59.374 55.000 0.00 0.00 0.00 5.80
437 439 4.525024 AGCTGATTTCATCTTCTCCAAGG 58.475 43.478 0.00 0.00 0.00 3.61
440 442 4.718774 ACCTAGCTGATTTCATCTTCTCCA 59.281 41.667 0.00 0.00 0.00 3.86
445 447 7.349598 ACCAAATACCTAGCTGATTTCATCTT 58.650 34.615 0.00 0.00 0.00 2.40
446 448 6.904626 ACCAAATACCTAGCTGATTTCATCT 58.095 36.000 0.00 0.00 0.00 2.90
448 450 8.275040 AGTTACCAAATACCTAGCTGATTTCAT 58.725 33.333 0.00 0.00 0.00 2.57
449 451 7.630082 AGTTACCAAATACCTAGCTGATTTCA 58.370 34.615 0.00 0.00 0.00 2.69
451 453 7.862675 AGAGTTACCAAATACCTAGCTGATTT 58.137 34.615 0.00 0.00 0.00 2.17
452 454 7.439108 AGAGTTACCAAATACCTAGCTGATT 57.561 36.000 0.00 0.00 0.00 2.57
454 456 7.966339 TTAGAGTTACCAAATACCTAGCTGA 57.034 36.000 0.00 0.00 0.00 4.26
456 458 9.668497 CTTTTTAGAGTTACCAAATACCTAGCT 57.332 33.333 0.00 0.00 0.00 3.32
457 459 8.396390 GCTTTTTAGAGTTACCAAATACCTAGC 58.604 37.037 0.00 0.00 0.00 3.42
458 460 9.444600 TGCTTTTTAGAGTTACCAAATACCTAG 57.555 33.333 0.00 0.00 0.00 3.02
459 461 9.444600 CTGCTTTTTAGAGTTACCAAATACCTA 57.555 33.333 0.00 0.00 0.00 3.08
460 462 7.094334 GCTGCTTTTTAGAGTTACCAAATACCT 60.094 37.037 0.00 0.00 0.00 3.08
462 464 7.590279 TGCTGCTTTTTAGAGTTACCAAATAC 58.410 34.615 0.00 0.00 0.00 1.89
463 465 7.447238 ACTGCTGCTTTTTAGAGTTACCAAATA 59.553 33.333 0.00 0.00 0.00 1.40
464 466 6.265422 ACTGCTGCTTTTTAGAGTTACCAAAT 59.735 34.615 0.00 0.00 0.00 2.32
465 467 5.592688 ACTGCTGCTTTTTAGAGTTACCAAA 59.407 36.000 0.00 0.00 0.00 3.28
469 471 5.236478 TGACACTGCTGCTTTTTAGAGTTAC 59.764 40.000 0.00 0.00 0.00 2.50
477 479 3.460103 CCATTTGACACTGCTGCTTTTT 58.540 40.909 0.00 0.00 0.00 1.94
479 481 1.342174 CCCATTTGACACTGCTGCTTT 59.658 47.619 0.00 0.00 0.00 3.51
996 1141 4.100084 CCGAGCAGGTCCATGGCA 62.100 66.667 6.96 0.00 34.51 4.92
1066 1213 0.467290 AGAGAGGCGGGAGAGATCAC 60.467 60.000 0.00 0.00 0.00 3.06
1115 1262 2.054363 CGAGCCTGAACGCATATACAG 58.946 52.381 0.00 0.00 0.00 2.74
1116 1263 2.134201 CGAGCCTGAACGCATATACA 57.866 50.000 0.00 0.00 0.00 2.29
1124 1271 3.827784 CGAACGCGAGCCTGAACG 61.828 66.667 15.93 2.41 40.82 3.95
1125 1272 2.430244 TCGAACGCGAGCCTGAAC 60.430 61.111 15.93 0.00 42.51 3.18
1257 1404 0.894835 CGGAAAATGGGGGAAAGTGG 59.105 55.000 0.00 0.00 0.00 4.00
1258 1405 0.246360 GCGGAAAATGGGGGAAAGTG 59.754 55.000 0.00 0.00 0.00 3.16
1259 1406 0.902984 GGCGGAAAATGGGGGAAAGT 60.903 55.000 0.00 0.00 0.00 2.66
1261 1408 0.902516 CAGGCGGAAAATGGGGGAAA 60.903 55.000 0.00 0.00 0.00 3.13
1262 1409 1.304879 CAGGCGGAAAATGGGGGAA 60.305 57.895 0.00 0.00 0.00 3.97
1264 1411 2.759560 CCAGGCGGAAAATGGGGG 60.760 66.667 0.00 0.00 0.00 5.40
1364 1559 2.092592 TGCAATCATGTCTGGAGCAGAT 60.093 45.455 0.00 0.00 42.73 2.90
1520 1733 4.748102 GCATAAAGAACATCCCAATGCATG 59.252 41.667 0.00 0.00 38.44 4.06
1530 1743 8.465273 AAGGTATAAAGGGCATAAAGAACATC 57.535 34.615 0.00 0.00 0.00 3.06
1536 1749 9.740710 ATAAGCTAAGGTATAAAGGGCATAAAG 57.259 33.333 0.00 0.00 0.00 1.85
1576 1791 7.693952 CAGTTGAACTCAGCTGTTTTAACTAA 58.306 34.615 25.71 9.49 46.01 2.24
1588 1803 4.153835 CCTGATTCTTCAGTTGAACTCAGC 59.846 45.833 0.00 0.00 46.71 4.26
1638 1853 9.886132 GGGTCAACTTGAAGAGAAGTATAATTA 57.114 33.333 0.00 0.00 35.01 1.40
1653 1868 6.484288 AGATCAAACATATGGGTCAACTTGA 58.516 36.000 7.80 4.85 0.00 3.02
1690 1905 8.137437 GGATCAAACATATGGTTCAACTTATGG 58.863 37.037 2.08 0.00 39.29 2.74
1701 1916 3.644966 ACGTGGGATCAAACATATGGT 57.355 42.857 7.80 0.00 0.00 3.55
1756 1971 3.981211 TGGCTTTTCAAAATGCTCTGAC 58.019 40.909 11.61 0.00 38.62 3.51
1784 1999 2.803956 GTTCCACAGTAGCGTAAAAGCA 59.196 45.455 0.00 0.00 40.15 3.91
1786 2001 5.202640 GTTTGTTCCACAGTAGCGTAAAAG 58.797 41.667 0.00 0.00 0.00 2.27
1950 2167 3.823873 TGTTGCTCAATTCCCAAATACGT 59.176 39.130 0.00 0.00 0.00 3.57
1951 2168 4.414852 CTGTTGCTCAATTCCCAAATACG 58.585 43.478 0.00 0.00 0.00 3.06
1953 2170 4.220382 CACCTGTTGCTCAATTCCCAAATA 59.780 41.667 0.00 0.00 0.00 1.40
1954 2171 3.007182 CACCTGTTGCTCAATTCCCAAAT 59.993 43.478 0.00 0.00 0.00 2.32
1955 2172 2.364970 CACCTGTTGCTCAATTCCCAAA 59.635 45.455 0.00 0.00 0.00 3.28
1956 2173 1.962807 CACCTGTTGCTCAATTCCCAA 59.037 47.619 0.00 0.00 0.00 4.12
2091 2311 7.809331 CACAGCAGCAAGAAATAGTTTGATAAA 59.191 33.333 0.00 0.00 0.00 1.40
2245 2465 6.714810 ACACTGCAATTCTTGTTACCTGATTA 59.285 34.615 0.00 0.00 0.00 1.75
2251 2471 4.546570 GGAACACTGCAATTCTTGTTACC 58.453 43.478 5.33 0.00 32.34 2.85
2269 2489 0.472471 TGACACTCACAAGGGGGAAC 59.528 55.000 0.00 0.00 0.00 3.62
2622 2842 3.096092 AGGTTTTGCACAGGAAACAAGA 58.904 40.909 12.47 0.00 37.46 3.02
2705 2927 7.801716 TTGTGCTGAAATAAAGTAGTTCACT 57.198 32.000 0.00 0.00 37.78 3.41
2751 2978 8.872845 CAATTACTTTTGAAATACATGGGAAGC 58.127 33.333 0.00 0.00 0.00 3.86
2789 3016 5.832060 AGATCCCTCAATTATCAGCTTTTGG 59.168 40.000 0.00 0.00 0.00 3.28
2810 3037 8.572855 AAAGAAGCAGCTTAATAACAGAAGAT 57.427 30.769 7.92 0.00 0.00 2.40
2982 3251 3.923017 AAAGCTCAAATGGAAACTCGG 57.077 42.857 0.00 0.00 0.00 4.63
3061 3330 6.925165 CAGTGTCCTATTGAAAAGTGCATTTT 59.075 34.615 0.65 0.65 43.88 1.82
3115 3384 4.202172 GGAGCACCTAAAGATCTGAGTACC 60.202 50.000 0.00 0.00 0.00 3.34
3474 3747 5.835819 TCATCACTAACTCCCTCCATTCTAG 59.164 44.000 0.00 0.00 0.00 2.43
3541 3814 8.458843 GGGTTTCATTCTCGAAAGAAATAATCA 58.541 33.333 11.64 0.00 44.49 2.57
3542 3815 7.915923 GGGGTTTCATTCTCGAAAGAAATAATC 59.084 37.037 11.64 2.03 44.49 1.75
3543 3816 7.147897 GGGGGTTTCATTCTCGAAAGAAATAAT 60.148 37.037 11.64 0.00 44.49 1.28
3545 3818 5.650703 GGGGGTTTCATTCTCGAAAGAAATA 59.349 40.000 11.64 0.00 44.49 1.40
3546 3819 4.462834 GGGGGTTTCATTCTCGAAAGAAAT 59.537 41.667 11.64 0.00 44.49 2.17
3583 3856 3.323691 CAGGATATATGTTGGACGGGACA 59.676 47.826 0.00 0.00 0.00 4.02
3651 3924 6.207417 ACATTACATTTCACCTCCAAAGACAG 59.793 38.462 0.00 0.00 0.00 3.51
4008 4281 3.637229 ACTTGCAGGCGTAGTCTACATAT 59.363 43.478 10.59 0.00 46.86 1.78
4277 4556 7.654022 TTGATATGGTAAAATGGTCCCTTTC 57.346 36.000 0.00 0.00 0.00 2.62
4441 4781 0.613260 ACAAGGGCTAAGACGCATCA 59.387 50.000 0.00 0.00 0.00 3.07
4461 4801 2.236644 GTCTGGTTCTAGGGGTCTTTCC 59.763 54.545 0.00 0.00 0.00 3.13
4483 4830 0.467290 TGGAAAACAGCACACCCTCC 60.467 55.000 0.00 0.00 0.00 4.30
4675 5026 4.816385 TGAAGAGTGCAAAGACCTTTACAG 59.184 41.667 0.00 0.00 0.00 2.74
4777 5134 2.613691 GAATGCAGCCATTTGAGTTGG 58.386 47.619 0.00 0.00 41.60 3.77
4836 5193 1.917273 CAAAAGCCAATCCATCAGCG 58.083 50.000 0.00 0.00 0.00 5.18
4917 5274 2.569404 AGAAGAGGCCTGACTTCGAAAT 59.431 45.455 22.15 7.83 44.65 2.17
4933 5290 4.222810 TGTCATGGATCGGAGAAAAGAAGA 59.777 41.667 0.00 0.00 43.58 2.87
4934 5291 4.507710 TGTCATGGATCGGAGAAAAGAAG 58.492 43.478 0.00 0.00 43.58 2.85
4935 5292 4.551702 TGTCATGGATCGGAGAAAAGAA 57.448 40.909 0.00 0.00 43.58 2.52
4984 5344 0.958876 AACCAGGGCGACGAATTTCC 60.959 55.000 0.00 0.00 0.00 3.13
5030 5390 0.108585 TCAAAGTGGAGGTGTCAGCC 59.891 55.000 0.00 0.00 0.00 4.85
5032 5392 2.917933 TGTTCAAAGTGGAGGTGTCAG 58.082 47.619 0.00 0.00 0.00 3.51
5116 5476 9.811995 CCACAAAGTAAGCAATATAGTACTGTA 57.188 33.333 5.39 3.26 0.00 2.74
5169 5529 7.920151 CAGAAACACAAATATTTCAAGGTGTGA 59.080 33.333 17.77 0.00 39.23 3.58
5202 5563 5.580691 TCTCATGATTTATGGTCAACGACAC 59.419 40.000 0.00 0.00 37.39 3.67
5310 5673 2.352960 GCACTTGCAAGTATAGCCTGTC 59.647 50.000 30.67 9.93 41.59 3.51
5436 6116 6.465948 TCAATCCAAGCTGCAAAATAAACAT 58.534 32.000 1.02 0.00 0.00 2.71
5639 6320 7.939782 TCAAGTATGAACTGCAAGAAAATCAA 58.060 30.769 0.00 0.00 35.62 2.57
6058 8072 2.037251 TCTTTGCTCACTGTACCTCCAC 59.963 50.000 0.00 0.00 0.00 4.02
6126 8143 6.775594 AAAGCCATTAGTGAATAAGGGTTC 57.224 37.500 5.24 0.00 45.33 3.62
6205 8381 6.204688 CCTCGTGCACAACATATGGTATAATT 59.795 38.462 18.64 0.00 0.00 1.40
6208 8384 4.342665 TCCTCGTGCACAACATATGGTATA 59.657 41.667 18.64 0.00 0.00 1.47
6209 8385 3.133901 TCCTCGTGCACAACATATGGTAT 59.866 43.478 18.64 0.00 0.00 2.73
6210 8386 2.498078 TCCTCGTGCACAACATATGGTA 59.502 45.455 18.64 0.00 0.00 3.25
6211 8387 1.277842 TCCTCGTGCACAACATATGGT 59.722 47.619 18.64 0.00 0.00 3.55
6213 8389 2.621338 ACTCCTCGTGCACAACATATG 58.379 47.619 18.64 0.00 0.00 1.78
6214 8390 3.181475 CCTACTCCTCGTGCACAACATAT 60.181 47.826 18.64 0.04 0.00 1.78
6216 8392 1.066858 CCTACTCCTCGTGCACAACAT 60.067 52.381 18.64 0.00 0.00 2.71
6217 8393 0.317160 CCTACTCCTCGTGCACAACA 59.683 55.000 18.64 0.00 0.00 3.33
6218 8394 0.601558 TCCTACTCCTCGTGCACAAC 59.398 55.000 18.64 0.00 0.00 3.32
6219 8395 0.888619 CTCCTACTCCTCGTGCACAA 59.111 55.000 18.64 0.00 0.00 3.33
6220 8396 0.965866 CCTCCTACTCCTCGTGCACA 60.966 60.000 18.64 3.15 0.00 4.57
6221 8397 0.966370 ACCTCCTACTCCTCGTGCAC 60.966 60.000 6.82 6.82 0.00 4.57
6223 8399 1.984066 ATACCTCCTACTCCTCGTGC 58.016 55.000 0.00 0.00 0.00 5.34
6224 8400 6.474630 AGTTATATACCTCCTACTCCTCGTG 58.525 44.000 0.00 0.00 0.00 4.35
6225 8401 6.501453 AGAGTTATATACCTCCTACTCCTCGT 59.499 42.308 3.82 0.00 34.10 4.18
6226 8402 6.819649 CAGAGTTATATACCTCCTACTCCTCG 59.180 46.154 3.82 0.00 34.10 4.63
6227 8403 7.037442 TCCAGAGTTATATACCTCCTACTCCTC 60.037 44.444 3.82 0.00 34.10 3.71
6228 8404 6.798560 TCCAGAGTTATATACCTCCTACTCCT 59.201 42.308 3.82 0.00 34.10 3.69
6229 8405 6.885918 GTCCAGAGTTATATACCTCCTACTCC 59.114 46.154 3.82 0.00 34.10 3.85
6230 8406 6.885918 GGTCCAGAGTTATATACCTCCTACTC 59.114 46.154 3.82 3.32 33.86 2.59
6231 8407 6.240527 GGGTCCAGAGTTATATACCTCCTACT 60.241 46.154 3.82 0.00 0.00 2.57
6232 8408 5.951148 GGGTCCAGAGTTATATACCTCCTAC 59.049 48.000 3.82 1.01 0.00 3.18
6233 8409 5.016031 GGGGTCCAGAGTTATATACCTCCTA 59.984 48.000 3.82 0.00 0.00 2.94
6424 8617 6.024552 TCTACGAGAATATACATGCATGCA 57.975 37.500 26.53 25.04 0.00 3.96
6425 8618 7.918033 ACTATCTACGAGAATATACATGCATGC 59.082 37.037 26.53 11.82 0.00 4.06
6426 8619 9.444534 GACTATCTACGAGAATATACATGCATG 57.555 37.037 25.09 25.09 0.00 4.06
6427 8620 9.402320 AGACTATCTACGAGAATATACATGCAT 57.598 33.333 0.00 0.00 0.00 3.96
6428 8621 8.669243 CAGACTATCTACGAGAATATACATGCA 58.331 37.037 0.00 0.00 0.00 3.96
6429 8622 8.884726 TCAGACTATCTACGAGAATATACATGC 58.115 37.037 0.00 0.00 0.00 4.06
6452 8645 9.953697 GTAAATATTCTACCTACAGTCAGTCAG 57.046 37.037 0.00 0.00 0.00 3.51
6454 8647 9.733219 GTGTAAATATTCTACCTACAGTCAGTC 57.267 37.037 0.00 0.00 0.00 3.51
6571 8768 3.622455 GCCATTCTTGTGCTAGGTAAGGT 60.622 47.826 0.00 0.00 0.00 3.50
6572 8769 2.945668 GCCATTCTTGTGCTAGGTAAGG 59.054 50.000 0.00 0.00 0.00 2.69
6573 8770 3.609853 TGCCATTCTTGTGCTAGGTAAG 58.390 45.455 0.00 0.00 0.00 2.34
6574 8771 3.712016 TGCCATTCTTGTGCTAGGTAA 57.288 42.857 0.00 0.00 0.00 2.85
6575 8772 3.931907 ATGCCATTCTTGTGCTAGGTA 57.068 42.857 0.00 0.00 0.00 3.08
6605 8802 6.598176 GTGCAACTCTTTTAGTTTATTCGC 57.402 37.500 0.00 0.00 46.61 4.70
6636 8833 3.332919 GGCAGATCATAGCATGTTCGAT 58.667 45.455 0.00 0.00 34.87 3.59
6759 8959 1.551019 GGCCGGACTACAGTTCCCTT 61.551 60.000 5.05 0.00 0.00 3.95
6896 9096 1.131420 CAGCAACTCGAAGCGCTTC 59.869 57.895 34.98 34.98 36.29 3.86
6897 9097 2.959357 GCAGCAACTCGAAGCGCTT 61.959 57.895 25.35 25.35 35.48 4.68
6899 9099 3.240606 TTGCAGCAACTCGAAGCGC 62.241 57.895 2.83 0.00 35.48 5.92
6900 9100 1.439365 GTTGCAGCAACTCGAAGCG 60.439 57.895 27.98 0.00 40.73 4.68
6935 9137 1.003580 TGGAGGAAGCAGGATGACAAC 59.996 52.381 0.00 0.00 39.69 3.32
6940 9142 1.153005 GCCTGGAGGAAGCAGGATG 60.153 63.158 0.00 0.00 38.33 3.51
6944 9146 1.138661 CTAGAAGCCTGGAGGAAGCAG 59.861 57.143 0.00 0.00 37.39 4.24
6946 9148 1.199615 ACTAGAAGCCTGGAGGAAGC 58.800 55.000 0.00 0.00 37.39 3.86
6947 9149 4.280677 CAGATACTAGAAGCCTGGAGGAAG 59.719 50.000 0.00 0.00 37.39 3.46
6963 9165 4.267349 ACTGCCAACGTTTACAGATACT 57.733 40.909 26.15 7.92 34.25 2.12
6964 9166 4.032558 GCTACTGCCAACGTTTACAGATAC 59.967 45.833 26.15 14.37 34.25 2.24
6966 9168 3.000727 GCTACTGCCAACGTTTACAGAT 58.999 45.455 26.15 15.96 34.25 2.90
6994 9196 0.181114 TGGCCATCGGAATTCTCAGG 59.819 55.000 0.00 4.16 0.00 3.86
6996 9198 0.911769 ACTGGCCATCGGAATTCTCA 59.088 50.000 5.51 0.00 0.00 3.27
7027 9229 0.751643 ACAACTGTGGCTGGGTGTTC 60.752 55.000 0.00 0.00 0.00 3.18
7053 9255 0.461870 TAGCACGATCATGGTGTGGC 60.462 55.000 3.31 3.94 37.70 5.01
7138 9344 2.481276 CGAGCCAACCAGTTCGATGATA 60.481 50.000 0.00 0.00 35.19 2.15
7139 9345 1.740380 CGAGCCAACCAGTTCGATGAT 60.740 52.381 0.00 0.00 35.19 2.45
7239 9458 3.425359 GCACAAAGTGTCTGATTCGATGG 60.425 47.826 0.00 0.00 35.75 3.51
7248 9467 1.159713 TCCGCTGCACAAAGTGTCTG 61.160 55.000 0.00 0.00 35.75 3.51
7249 9468 0.463654 TTCCGCTGCACAAAGTGTCT 60.464 50.000 0.00 0.00 35.75 3.41
7261 9480 2.860735 GCTATACTGACACTTTCCGCTG 59.139 50.000 0.00 0.00 0.00 5.18
7265 9490 4.099573 TGGCTAGCTATACTGACACTTTCC 59.900 45.833 15.72 0.00 0.00 3.13
7282 9507 2.425143 TGCTTTCAGGGAATGGCTAG 57.575 50.000 0.00 0.00 0.00 3.42
7283 9508 2.746142 CGATGCTTTCAGGGAATGGCTA 60.746 50.000 0.00 0.00 0.00 3.93
7284 9509 1.772836 GATGCTTTCAGGGAATGGCT 58.227 50.000 0.00 0.00 0.00 4.75
7285 9510 0.383231 CGATGCTTTCAGGGAATGGC 59.617 55.000 0.00 0.00 0.00 4.40
7299 9524 1.132834 TGAACACCATTCATGCGATGC 59.867 47.619 0.00 0.00 0.00 3.91
7328 9553 4.878971 TGTTTGTGCTAGCTACAAAGTCAA 59.121 37.500 29.43 19.27 45.51 3.18
7337 9562 4.002982 CCATGTCTTGTTTGTGCTAGCTA 58.997 43.478 17.23 1.87 0.00 3.32
7338 9563 2.816087 CCATGTCTTGTTTGTGCTAGCT 59.184 45.455 17.23 0.00 0.00 3.32
7339 9564 2.813754 TCCATGTCTTGTTTGTGCTAGC 59.186 45.455 8.10 8.10 0.00 3.42
7340 9565 5.633830 AATCCATGTCTTGTTTGTGCTAG 57.366 39.130 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.