Multiple sequence alignment - TraesCS1A01G304800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G304800 chr1A 100.000 5099 0 0 1 5099 497749128 497754226 0.000000e+00 9417.0
1 TraesCS1A01G304800 chr1B 95.917 1837 60 4 2438 4260 540137832 540139667 0.000000e+00 2963.0
2 TraesCS1A01G304800 chr1B 96.480 909 32 0 989 1897 540136931 540137839 0.000000e+00 1502.0
3 TraesCS1A01G304800 chr1B 93.917 411 16 4 4693 5096 540139659 540140067 3.370000e-171 612.0
4 TraesCS1A01G304800 chr1B 89.443 341 22 7 657 996 540136433 540136760 7.900000e-113 418.0
5 TraesCS1A01G304800 chr1B 95.833 120 5 0 542 661 540136279 540136398 1.450000e-45 195.0
6 TraesCS1A01G304800 chr1B 90.604 149 8 6 4485 4631 626226865 626227009 5.210000e-45 193.0
7 TraesCS1A01G304800 chr1B 94.340 53 3 0 2065 2117 556993820 556993768 1.180000e-11 82.4
8 TraesCS1A01G304800 chr1B 100.000 36 0 0 2031 2066 401619002 401618967 3.290000e-07 67.6
9 TraesCS1A01G304800 chr1D 90.637 1570 91 15 418 1948 402134485 402136037 0.000000e+00 2034.0
10 TraesCS1A01G304800 chr1D 95.833 912 23 4 3363 4260 402144298 402145208 0.000000e+00 1459.0
11 TraesCS1A01G304800 chr1D 87.956 822 61 9 2181 2968 402136100 402136917 0.000000e+00 935.0
12 TraesCS1A01G304800 chr1D 95.075 467 20 2 4627 5093 402150853 402151316 0.000000e+00 732.0
13 TraesCS1A01G304800 chr1D 88.186 237 20 2 4266 4502 402150626 402150854 5.030000e-70 276.0
14 TraesCS1A01G304800 chr1D 94.231 52 3 0 2066 2117 7711951 7711900 4.230000e-11 80.5
15 TraesCS1A01G304800 chr4B 77.253 1376 253 45 2511 3859 32971534 32972876 0.000000e+00 752.0
16 TraesCS1A01G304800 chr4B 77.174 1380 243 52 2511 3859 34540631 34541969 0.000000e+00 737.0
17 TraesCS1A01G304800 chr4B 80.764 733 127 12 1162 1887 32970573 32971298 1.240000e-155 560.0
18 TraesCS1A01G304800 chr4B 79.420 724 138 11 1169 1888 34539680 34540396 7.620000e-138 501.0
19 TraesCS1A01G304800 chr4B 91.447 152 10 3 4478 4629 518087570 518087718 6.690000e-49 206.0
20 TraesCS1A01G304800 chr4B 95.349 86 2 1 159 242 406559829 406559744 8.910000e-28 135.0
21 TraesCS1A01G304800 chr4A 77.491 1355 237 42 2537 3859 579527949 579526631 0.000000e+00 750.0
22 TraesCS1A01G304800 chr4A 80.435 736 126 17 1162 1888 579528937 579528211 3.470000e-151 545.0
23 TraesCS1A01G304800 chr4A 88.535 157 12 6 4497 4650 652849884 652849731 8.720000e-43 185.0
24 TraesCS1A01G304800 chr4A 80.620 129 16 8 278 403 735862238 735862360 1.960000e-14 91.6
25 TraesCS1A01G304800 chr4A 89.552 67 5 1 161 225 82622408 82622474 3.270000e-12 84.2
26 TraesCS1A01G304800 chr4A 100.000 36 0 0 2031 2066 522917021 522916986 3.290000e-07 67.6
27 TraesCS1A01G304800 chr7D 76.963 1337 249 46 2530 3847 566321039 566322335 0.000000e+00 708.0
28 TraesCS1A01G304800 chr7D 97.297 37 1 0 2030 2066 195277188 195277152 4.260000e-06 63.9
29 TraesCS1A01G304800 chr7D 97.222 36 1 0 2031 2066 333692900 333692865 1.530000e-05 62.1
30 TraesCS1A01G304800 chr4D 76.500 1383 250 53 2511 3859 22573584 22574925 0.000000e+00 684.0
31 TraesCS1A01G304800 chr4D 81.088 735 123 15 1162 1888 22572536 22573262 1.590000e-159 573.0
32 TraesCS1A01G304800 chr4D 80.874 732 128 10 1162 1887 21696500 21695775 2.660000e-157 566.0
33 TraesCS1A01G304800 chr4D 82.562 648 101 8 2537 3174 21695515 21694870 1.240000e-155 560.0
34 TraesCS1A01G304800 chr4D 91.860 86 5 1 159 242 327303435 327303350 8.970000e-23 119.0
35 TraesCS1A01G304800 chr4D 100.000 36 0 0 2031 2066 70234573 70234538 3.290000e-07 67.6
36 TraesCS1A01G304800 chr4D 97.222 36 1 0 2031 2066 502014108 502014073 1.530000e-05 62.1
37 TraesCS1A01G304800 chr6B 76.894 1307 225 52 2788 4069 503007481 503008735 0.000000e+00 669.0
38 TraesCS1A01G304800 chr6B 92.105 152 12 0 2 153 573629109 573628958 1.110000e-51 215.0
39 TraesCS1A01G304800 chr6B 86.667 90 6 5 2538 2626 503007208 503007292 1.510000e-15 95.3
40 TraesCS1A01G304800 chr6B 96.000 50 2 0 2065 2114 278674662 278674613 1.180000e-11 82.4
41 TraesCS1A01G304800 chr6B 97.222 36 1 0 2031 2066 396438699 396438734 1.530000e-05 62.1
42 TraesCS1A01G304800 chr3D 77.887 1117 191 42 2457 3556 45931723 45932800 1.200000e-180 643.0
43 TraesCS1A01G304800 chr3D 75.594 1053 210 40 2823 3859 63764552 63765573 1.280000e-130 477.0
44 TraesCS1A01G304800 chr3D 77.131 739 152 16 2822 3556 62073325 62072600 3.670000e-111 412.0
45 TraesCS1A01G304800 chr3D 78.546 564 114 7 1213 1774 62116195 62115637 1.040000e-96 364.0
46 TraesCS1A01G304800 chr3D 95.425 153 7 0 1 153 581541586 581541434 1.420000e-60 244.0
47 TraesCS1A01G304800 chr3D 77.184 412 52 21 4714 5088 126951929 126951523 8.660000e-48 202.0
48 TraesCS1A01G304800 chr3A 77.586 1102 187 40 2477 3556 57515784 57516847 3.370000e-171 612.0
49 TraesCS1A01G304800 chr3A 75.575 1044 215 32 2817 3847 73499187 73500203 3.570000e-131 479.0
50 TraesCS1A01G304800 chr3A 75.048 1038 222 28 2822 3850 71151506 71150497 1.010000e-121 448.0
51 TraesCS1A01G304800 chr3A 78.019 414 45 18 4714 5088 137582409 137582003 8.600000e-53 219.0
52 TraesCS1A01G304800 chr6A 76.269 1281 226 52 2817 4069 457586557 457585327 1.210000e-170 610.0
53 TraesCS1A01G304800 chr6A 85.227 88 9 4 2545 2632 457602690 457602607 2.530000e-13 87.9
54 TraesCS1A01G304800 chr6A 96.000 50 2 0 2065 2114 209391390 209391341 1.180000e-11 82.4
55 TraesCS1A01G304800 chr6A 94.340 53 3 0 2065 2117 480647938 480647886 1.180000e-11 82.4
56 TraesCS1A01G304800 chr6D 75.781 1280 235 52 2817 4069 320069427 320068196 1.230000e-160 577.0
57 TraesCS1A01G304800 chr6D 85.106 94 10 4 2539 2632 320069722 320069633 5.440000e-15 93.5
58 TraesCS1A01G304800 chr6D 96.000 50 2 0 2065 2114 155602010 155601961 1.180000e-11 82.4
59 TraesCS1A01G304800 chr6D 97.222 36 1 0 2031 2066 463850385 463850420 1.530000e-05 62.1
60 TraesCS1A01G304800 chr2B 74.886 1318 259 53 2788 4069 132279084 132280365 7.510000e-148 534.0
61 TraesCS1A01G304800 chr2B 93.431 137 6 3 4496 4631 711223871 711224005 3.110000e-47 200.0
62 TraesCS1A01G304800 chr2B 92.701 137 8 2 4496 4632 776888736 776888870 4.030000e-46 196.0
63 TraesCS1A01G304800 chr2B 89.103 156 12 5 4499 4653 578606374 578606525 6.740000e-44 189.0
64 TraesCS1A01G304800 chr2B 96.078 51 2 0 2065 2115 785136263 785136313 3.270000e-12 84.2
65 TraesCS1A01G304800 chr7B 79.595 740 138 12 1174 1908 618762300 618761569 7.570000e-143 518.0
66 TraesCS1A01G304800 chr7B 79.595 740 138 12 1174 1908 618851606 618850875 7.570000e-143 518.0
67 TraesCS1A01G304800 chr7B 95.349 129 5 1 4501 4629 219565149 219565276 2.410000e-48 204.0
68 TraesCS1A01G304800 chr7A 95.385 130 5 1 4499 4628 105137290 105137162 6.690000e-49 206.0
69 TraesCS1A01G304800 chr3B 95.349 129 5 1 4500 4628 436445207 436445334 2.410000e-48 204.0
70 TraesCS1A01G304800 chr3B 77.295 414 48 18 4714 5088 181291700 181291294 8.660000e-48 202.0
71 TraesCS1A01G304800 chr3B 80.000 135 22 5 1537 1670 100971508 100971378 1.510000e-15 95.3
72 TraesCS1A01G304800 chr3B 85.333 75 5 4 2535 2608 739870455 739870386 7.080000e-09 73.1
73 TraesCS1A01G304800 chr2A 95.349 86 2 1 159 242 36376029 36376114 8.910000e-28 135.0
74 TraesCS1A01G304800 chr2A 96.078 51 2 0 2065 2115 775526469 775526419 3.270000e-12 84.2
75 TraesCS1A01G304800 chr2A 100.000 36 0 0 2031 2066 21264916 21264881 3.290000e-07 67.6
76 TraesCS1A01G304800 chr2D 96.078 51 2 0 2065 2115 649145896 649145946 3.270000e-12 84.2
77 TraesCS1A01G304800 chr2D 96.970 33 1 0 243 275 155987397 155987365 7.130000e-04 56.5
78 TraesCS1A01G304800 chr5D 92.157 51 4 0 2577 2627 558947515 558947565 7.080000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G304800 chr1A 497749128 497754226 5098 False 9417.00 9417 100.0000 1 5099 1 chr1A.!!$F1 5098
1 TraesCS1A01G304800 chr1B 540136279 540140067 3788 False 1138.00 2963 94.3180 542 5096 5 chr1B.!!$F2 4554
2 TraesCS1A01G304800 chr1D 402134485 402136917 2432 False 1484.50 2034 89.2965 418 2968 2 chr1D.!!$F2 2550
3 TraesCS1A01G304800 chr1D 402144298 402145208 910 False 1459.00 1459 95.8330 3363 4260 1 chr1D.!!$F1 897
4 TraesCS1A01G304800 chr1D 402150626 402151316 690 False 504.00 732 91.6305 4266 5093 2 chr1D.!!$F3 827
5 TraesCS1A01G304800 chr4B 32970573 32972876 2303 False 656.00 752 79.0085 1162 3859 2 chr4B.!!$F2 2697
6 TraesCS1A01G304800 chr4B 34539680 34541969 2289 False 619.00 737 78.2970 1169 3859 2 chr4B.!!$F3 2690
7 TraesCS1A01G304800 chr4A 579526631 579528937 2306 True 647.50 750 78.9630 1162 3859 2 chr4A.!!$R3 2697
8 TraesCS1A01G304800 chr7D 566321039 566322335 1296 False 708.00 708 76.9630 2530 3847 1 chr7D.!!$F1 1317
9 TraesCS1A01G304800 chr4D 22572536 22574925 2389 False 628.50 684 78.7940 1162 3859 2 chr4D.!!$F1 2697
10 TraesCS1A01G304800 chr4D 21694870 21696500 1630 True 563.00 566 81.7180 1162 3174 2 chr4D.!!$R4 2012
11 TraesCS1A01G304800 chr6B 503007208 503008735 1527 False 382.15 669 81.7805 2538 4069 2 chr6B.!!$F2 1531
12 TraesCS1A01G304800 chr3D 45931723 45932800 1077 False 643.00 643 77.8870 2457 3556 1 chr3D.!!$F1 1099
13 TraesCS1A01G304800 chr3D 63764552 63765573 1021 False 477.00 477 75.5940 2823 3859 1 chr3D.!!$F2 1036
14 TraesCS1A01G304800 chr3D 62072600 62073325 725 True 412.00 412 77.1310 2822 3556 1 chr3D.!!$R1 734
15 TraesCS1A01G304800 chr3D 62115637 62116195 558 True 364.00 364 78.5460 1213 1774 1 chr3D.!!$R2 561
16 TraesCS1A01G304800 chr3A 57515784 57516847 1063 False 612.00 612 77.5860 2477 3556 1 chr3A.!!$F1 1079
17 TraesCS1A01G304800 chr3A 73499187 73500203 1016 False 479.00 479 75.5750 2817 3847 1 chr3A.!!$F2 1030
18 TraesCS1A01G304800 chr3A 71150497 71151506 1009 True 448.00 448 75.0480 2822 3850 1 chr3A.!!$R1 1028
19 TraesCS1A01G304800 chr6A 457585327 457586557 1230 True 610.00 610 76.2690 2817 4069 1 chr6A.!!$R2 1252
20 TraesCS1A01G304800 chr6D 320068196 320069722 1526 True 335.25 577 80.4435 2539 4069 2 chr6D.!!$R2 1530
21 TraesCS1A01G304800 chr2B 132279084 132280365 1281 False 534.00 534 74.8860 2788 4069 1 chr2B.!!$F1 1281
22 TraesCS1A01G304800 chr7B 618761569 618762300 731 True 518.00 518 79.5950 1174 1908 1 chr7B.!!$R1 734
23 TraesCS1A01G304800 chr7B 618850875 618851606 731 True 518.00 518 79.5950 1174 1908 1 chr7B.!!$R2 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.035725 CTGGAGCTGGATCACTTGCA 60.036 55.0 0.00 0.00 0.0 4.08 F
253 254 0.037326 TCGCGACCAAAAGATCAGCT 60.037 50.0 3.71 0.00 0.0 4.24 F
254 255 0.095935 CGCGACCAAAAGATCAGCTG 59.904 55.0 7.63 7.63 0.0 4.24 F
1761 2016 0.396435 ATGTCAAGGAACCGAGCACA 59.604 50.0 0.00 0.00 0.0 4.57 F
2317 2609 0.396435 TGTGTTAGAGGGCTGTGGTG 59.604 55.0 0.00 0.00 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 2002 0.249911 GACTGTGTGCTCGGTTCCTT 60.250 55.000 0.00 0.0 0.00 3.36 R
1816 2071 1.006281 AGCATCCTGGATTTCCAAGCA 59.994 47.619 6.42 0.0 46.97 3.91 R
2250 2524 1.269448 CACAGCGCCCTAAACACAAAT 59.731 47.619 2.29 0.0 0.00 2.32 R
3344 3770 0.179089 CTGCCTTCTCCACCTCATCG 60.179 60.000 0.00 0.0 0.00 3.84 R
4269 4731 0.035343 GAGTAGTTTGGCCCAGGACC 60.035 60.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.038080 GCAAAAGTCCGCCGTGGG 62.038 66.667 0.00 0.00 38.76 4.61
18 19 4.038080 CAAAAGTCCGCCGTGGGC 62.038 66.667 0.00 0.00 46.75 5.36
38 39 4.020617 CACCTCCCTGCCAGCGAA 62.021 66.667 0.00 0.00 0.00 4.70
39 40 4.021925 ACCTCCCTGCCAGCGAAC 62.022 66.667 0.00 0.00 0.00 3.95
40 41 3.710722 CCTCCCTGCCAGCGAACT 61.711 66.667 0.00 0.00 0.00 3.01
41 42 2.435586 CTCCCTGCCAGCGAACTG 60.436 66.667 0.00 0.00 44.05 3.16
42 43 4.704833 TCCCTGCCAGCGAACTGC 62.705 66.667 0.00 0.00 43.02 4.40
52 53 2.321060 CGAACTGCGCCGCATAAG 59.679 61.111 14.15 3.20 38.13 1.73
53 54 2.023320 GAACTGCGCCGCATAAGC 59.977 61.111 14.15 0.00 38.13 3.09
72 73 2.823628 GGAACGAACCGAGAACTGG 58.176 57.895 0.00 0.00 0.00 4.00
73 74 0.316204 GGAACGAACCGAGAACTGGA 59.684 55.000 0.00 0.00 0.00 3.86
74 75 1.416373 GAACGAACCGAGAACTGGAC 58.584 55.000 0.00 0.00 0.00 4.02
75 76 0.318445 AACGAACCGAGAACTGGACG 60.318 55.000 0.00 0.00 36.52 4.79
76 77 1.285023 CGAACCGAGAACTGGACGT 59.715 57.895 0.00 0.00 0.00 4.34
77 78 0.318445 CGAACCGAGAACTGGACGTT 60.318 55.000 0.00 0.00 38.91 3.99
84 85 2.525422 GAACTGGACGTTCGGTTCC 58.475 57.895 30.73 16.77 43.56 3.62
85 86 0.947660 GAACTGGACGTTCGGTTCCC 60.948 60.000 30.73 13.33 43.56 3.97
86 87 1.688269 AACTGGACGTTCGGTTCCCA 61.688 55.000 15.62 2.30 31.13 4.37
87 88 1.070105 CTGGACGTTCGGTTCCCAA 59.930 57.895 0.00 0.00 0.00 4.12
88 89 0.949105 CTGGACGTTCGGTTCCCAAG 60.949 60.000 0.00 0.00 0.00 3.61
89 90 2.322830 GGACGTTCGGTTCCCAAGC 61.323 63.158 0.00 0.00 0.00 4.01
90 91 2.281276 ACGTTCGGTTCCCAAGCC 60.281 61.111 0.00 0.00 0.00 4.35
91 92 3.053896 CGTTCGGTTCCCAAGCCC 61.054 66.667 0.00 0.00 0.00 5.19
92 93 2.114411 GTTCGGTTCCCAAGCCCA 59.886 61.111 0.00 0.00 0.00 5.36
93 94 1.529713 GTTCGGTTCCCAAGCCCAA 60.530 57.895 0.00 0.00 0.00 4.12
94 95 1.228429 TTCGGTTCCCAAGCCCAAG 60.228 57.895 0.00 0.00 0.00 3.61
95 96 3.373565 CGGTTCCCAAGCCCAAGC 61.374 66.667 0.00 0.00 40.32 4.01
109 110 1.447643 CAAGCTATGGAGTCGGGGG 59.552 63.158 0.00 0.00 0.00 5.40
110 111 1.003051 AAGCTATGGAGTCGGGGGT 59.997 57.895 0.00 0.00 0.00 4.95
111 112 0.620700 AAGCTATGGAGTCGGGGGTT 60.621 55.000 0.00 0.00 0.00 4.11
112 113 0.620700 AGCTATGGAGTCGGGGGTTT 60.621 55.000 0.00 0.00 0.00 3.27
113 114 0.463833 GCTATGGAGTCGGGGGTTTG 60.464 60.000 0.00 0.00 0.00 2.93
114 115 0.909623 CTATGGAGTCGGGGGTTTGT 59.090 55.000 0.00 0.00 0.00 2.83
115 116 1.280998 CTATGGAGTCGGGGGTTTGTT 59.719 52.381 0.00 0.00 0.00 2.83
116 117 0.037734 ATGGAGTCGGGGGTTTGTTC 59.962 55.000 0.00 0.00 0.00 3.18
117 118 1.303074 GGAGTCGGGGGTTTGTTCC 60.303 63.158 0.00 0.00 0.00 3.62
118 119 1.759236 GAGTCGGGGGTTTGTTCCT 59.241 57.895 0.00 0.00 0.00 3.36
119 120 0.605589 GAGTCGGGGGTTTGTTCCTG 60.606 60.000 0.00 0.00 0.00 3.86
120 121 1.602605 GTCGGGGGTTTGTTCCTGG 60.603 63.158 0.00 0.00 0.00 4.45
121 122 1.770927 TCGGGGGTTTGTTCCTGGA 60.771 57.895 0.00 0.00 0.00 3.86
122 123 1.303317 CGGGGGTTTGTTCCTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
123 124 1.606601 GGGGGTTTGTTCCTGGAGC 60.607 63.158 3.27 3.27 0.00 4.70
124 125 1.460699 GGGGTTTGTTCCTGGAGCT 59.539 57.895 11.95 0.00 0.00 4.09
125 126 0.895559 GGGGTTTGTTCCTGGAGCTG 60.896 60.000 11.95 0.00 0.00 4.24
126 127 0.895559 GGGTTTGTTCCTGGAGCTGG 60.896 60.000 11.95 0.00 0.00 4.85
127 128 0.110486 GGTTTGTTCCTGGAGCTGGA 59.890 55.000 11.95 0.00 0.00 3.86
128 129 1.272147 GGTTTGTTCCTGGAGCTGGAT 60.272 52.381 11.95 0.00 31.78 3.41
129 130 2.087646 GTTTGTTCCTGGAGCTGGATC 58.912 52.381 11.95 0.00 31.78 3.36
130 131 1.361204 TTGTTCCTGGAGCTGGATCA 58.639 50.000 11.95 0.00 31.78 2.92
131 132 0.615331 TGTTCCTGGAGCTGGATCAC 59.385 55.000 11.95 0.00 31.78 3.06
132 133 0.908198 GTTCCTGGAGCTGGATCACT 59.092 55.000 2.97 0.00 31.78 3.41
133 134 1.280421 GTTCCTGGAGCTGGATCACTT 59.720 52.381 2.97 0.00 31.78 3.16
134 135 0.907486 TCCTGGAGCTGGATCACTTG 59.093 55.000 0.00 0.00 0.00 3.16
135 136 0.747283 CCTGGAGCTGGATCACTTGC 60.747 60.000 0.00 0.00 0.00 4.01
136 137 0.035725 CTGGAGCTGGATCACTTGCA 60.036 55.000 0.00 0.00 0.00 4.08
137 138 0.401356 TGGAGCTGGATCACTTGCAA 59.599 50.000 0.00 0.00 0.00 4.08
138 139 1.005097 TGGAGCTGGATCACTTGCAAT 59.995 47.619 0.00 0.00 0.00 3.56
139 140 1.674962 GGAGCTGGATCACTTGCAATC 59.325 52.381 0.00 0.00 0.00 2.67
140 141 2.641305 GAGCTGGATCACTTGCAATCT 58.359 47.619 0.00 0.00 0.00 2.40
141 142 2.613133 GAGCTGGATCACTTGCAATCTC 59.387 50.000 0.00 0.00 0.00 2.75
142 143 2.239150 AGCTGGATCACTTGCAATCTCT 59.761 45.455 0.00 0.00 0.00 3.10
143 144 2.355132 GCTGGATCACTTGCAATCTCTG 59.645 50.000 0.00 0.00 0.00 3.35
154 155 3.795623 GCAATCTCTGCCAAACATCAT 57.204 42.857 0.00 0.00 46.13 2.45
155 156 4.119442 GCAATCTCTGCCAAACATCATT 57.881 40.909 0.00 0.00 46.13 2.57
156 157 5.252969 GCAATCTCTGCCAAACATCATTA 57.747 39.130 0.00 0.00 46.13 1.90
157 158 5.279384 GCAATCTCTGCCAAACATCATTAG 58.721 41.667 0.00 0.00 46.13 1.73
158 159 5.735354 GCAATCTCTGCCAAACATCATTAGG 60.735 44.000 0.00 0.00 46.13 2.69
159 160 3.282021 TCTCTGCCAAACATCATTAGGC 58.718 45.455 0.00 0.00 45.41 3.93
160 161 3.054139 TCTCTGCCAAACATCATTAGGCT 60.054 43.478 0.00 0.00 45.42 4.58
161 162 3.698040 CTCTGCCAAACATCATTAGGCTT 59.302 43.478 0.00 0.00 45.42 4.35
162 163 3.444742 TCTGCCAAACATCATTAGGCTTG 59.555 43.478 0.00 0.00 45.42 4.01
163 164 3.164268 TGCCAAACATCATTAGGCTTGT 58.836 40.909 0.00 0.00 45.42 3.16
164 165 3.056678 TGCCAAACATCATTAGGCTTGTG 60.057 43.478 0.00 0.00 45.42 3.33
165 166 3.056607 GCCAAACATCATTAGGCTTGTGT 60.057 43.478 0.00 0.00 42.01 3.72
166 167 4.561326 GCCAAACATCATTAGGCTTGTGTT 60.561 41.667 0.00 0.00 42.01 3.32
167 168 5.336372 GCCAAACATCATTAGGCTTGTGTTA 60.336 40.000 0.00 0.00 42.01 2.41
168 169 6.092748 CCAAACATCATTAGGCTTGTGTTAC 58.907 40.000 0.00 0.00 0.00 2.50
169 170 6.071952 CCAAACATCATTAGGCTTGTGTTACT 60.072 38.462 0.00 0.00 0.00 2.24
170 171 6.500684 AACATCATTAGGCTTGTGTTACTG 57.499 37.500 0.00 0.00 0.00 2.74
171 172 5.804639 ACATCATTAGGCTTGTGTTACTGA 58.195 37.500 0.00 0.00 0.00 3.41
172 173 6.237901 ACATCATTAGGCTTGTGTTACTGAA 58.762 36.000 0.00 0.00 0.00 3.02
173 174 6.714810 ACATCATTAGGCTTGTGTTACTGAAA 59.285 34.615 0.00 0.00 0.00 2.69
174 175 6.554334 TCATTAGGCTTGTGTTACTGAAAC 57.446 37.500 0.00 0.00 38.67 2.78
175 176 6.058833 TCATTAGGCTTGTGTTACTGAAACA 58.941 36.000 0.00 0.00 45.90 2.83
198 199 8.026341 ACATAATCTATGTTGCGATCTTGATG 57.974 34.615 0.00 0.00 46.69 3.07
199 200 7.658982 ACATAATCTATGTTGCGATCTTGATGT 59.341 33.333 0.00 0.00 46.69 3.06
200 201 6.932356 AATCTATGTTGCGATCTTGATGTT 57.068 33.333 0.00 0.00 0.00 2.71
201 202 6.932356 ATCTATGTTGCGATCTTGATGTTT 57.068 33.333 0.00 0.00 0.00 2.83
202 203 6.349973 TCTATGTTGCGATCTTGATGTTTC 57.650 37.500 0.00 0.00 0.00 2.78
203 204 6.108687 TCTATGTTGCGATCTTGATGTTTCT 58.891 36.000 0.00 0.00 0.00 2.52
204 205 7.264947 TCTATGTTGCGATCTTGATGTTTCTA 58.735 34.615 0.00 0.00 0.00 2.10
205 206 6.741992 ATGTTGCGATCTTGATGTTTCTAA 57.258 33.333 0.00 0.00 0.00 2.10
206 207 5.927030 TGTTGCGATCTTGATGTTTCTAAC 58.073 37.500 0.00 0.00 0.00 2.34
207 208 5.468409 TGTTGCGATCTTGATGTTTCTAACA 59.532 36.000 0.00 0.00 46.94 2.41
208 209 6.017523 TGTTGCGATCTTGATGTTTCTAACAA 60.018 34.615 0.00 0.00 45.86 2.83
209 210 6.552859 TGCGATCTTGATGTTTCTAACAAA 57.447 33.333 0.00 0.00 45.86 2.83
210 211 6.602179 TGCGATCTTGATGTTTCTAACAAAG 58.398 36.000 0.00 0.00 45.86 2.77
211 212 5.509622 GCGATCTTGATGTTTCTAACAAAGC 59.490 40.000 0.00 0.00 45.86 3.51
212 213 6.621596 GCGATCTTGATGTTTCTAACAAAGCT 60.622 38.462 0.00 0.00 45.86 3.74
213 214 7.301054 CGATCTTGATGTTTCTAACAAAGCTT 58.699 34.615 0.00 0.00 45.86 3.74
214 215 7.479916 CGATCTTGATGTTTCTAACAAAGCTTC 59.520 37.037 0.00 0.00 45.86 3.86
215 216 7.807977 TCTTGATGTTTCTAACAAAGCTTCT 57.192 32.000 0.00 0.00 45.86 2.85
216 217 7.642669 TCTTGATGTTTCTAACAAAGCTTCTG 58.357 34.615 0.00 3.20 45.86 3.02
217 218 6.942532 TGATGTTTCTAACAAAGCTTCTGT 57.057 33.333 0.00 3.89 45.86 3.41
218 219 7.333528 TGATGTTTCTAACAAAGCTTCTGTT 57.666 32.000 22.04 22.04 45.86 3.16
219 220 7.195646 TGATGTTTCTAACAAAGCTTCTGTTG 58.804 34.615 24.73 13.48 45.86 3.33
220 221 5.339990 TGTTTCTAACAAAGCTTCTGTTGC 58.660 37.500 24.73 15.14 38.72 4.17
221 222 5.105957 TGTTTCTAACAAAGCTTCTGTTGCA 60.106 36.000 24.73 16.56 38.72 4.08
222 223 5.574891 TTCTAACAAAGCTTCTGTTGCAA 57.425 34.783 24.73 17.75 37.56 4.08
223 224 5.173774 TCTAACAAAGCTTCTGTTGCAAG 57.826 39.130 24.73 18.20 37.56 4.01
224 225 4.881273 TCTAACAAAGCTTCTGTTGCAAGA 59.119 37.500 24.73 19.46 37.56 3.02
225 226 4.660789 AACAAAGCTTCTGTTGCAAGAT 57.339 36.364 19.48 0.00 35.70 2.40
226 227 4.234530 ACAAAGCTTCTGTTGCAAGATC 57.765 40.909 0.00 0.00 0.00 2.75
227 228 3.231965 CAAAGCTTCTGTTGCAAGATCG 58.768 45.455 0.00 0.00 0.00 3.69
228 229 1.446907 AGCTTCTGTTGCAAGATCGG 58.553 50.000 0.00 0.00 0.00 4.18
229 230 1.002430 AGCTTCTGTTGCAAGATCGGA 59.998 47.619 0.00 0.00 0.00 4.55
230 231 1.129437 GCTTCTGTTGCAAGATCGGAC 59.871 52.381 0.00 0.00 0.00 4.79
231 232 1.391485 CTTCTGTTGCAAGATCGGACG 59.609 52.381 0.00 0.00 0.00 4.79
232 233 0.389817 TCTGTTGCAAGATCGGACGG 60.390 55.000 0.00 0.00 0.00 4.79
233 234 1.970917 CTGTTGCAAGATCGGACGGC 61.971 60.000 0.00 0.00 0.00 5.68
234 235 1.741770 GTTGCAAGATCGGACGGCT 60.742 57.895 0.00 0.00 0.00 5.52
235 236 1.447838 TTGCAAGATCGGACGGCTC 60.448 57.895 0.00 0.00 0.00 4.70
236 237 2.956964 GCAAGATCGGACGGCTCG 60.957 66.667 0.00 0.00 0.00 5.03
237 238 2.956964 CAAGATCGGACGGCTCGC 60.957 66.667 0.00 0.00 0.00 5.03
238 239 4.554363 AAGATCGGACGGCTCGCG 62.554 66.667 0.00 0.00 0.00 5.87
245 246 3.039588 GACGGCTCGCGACCAAAA 61.040 61.111 21.91 0.00 0.00 2.44
246 247 3.011760 GACGGCTCGCGACCAAAAG 62.012 63.158 21.91 7.36 0.00 2.27
247 248 2.736995 CGGCTCGCGACCAAAAGA 60.737 61.111 21.91 0.00 0.00 2.52
248 249 2.100631 CGGCTCGCGACCAAAAGAT 61.101 57.895 21.91 0.00 0.00 2.40
249 250 1.716172 GGCTCGCGACCAAAAGATC 59.284 57.895 18.80 0.00 0.00 2.75
250 251 1.019278 GGCTCGCGACCAAAAGATCA 61.019 55.000 18.80 0.00 0.00 2.92
251 252 0.371645 GCTCGCGACCAAAAGATCAG 59.628 55.000 3.71 0.00 0.00 2.90
252 253 0.371645 CTCGCGACCAAAAGATCAGC 59.628 55.000 3.71 0.00 0.00 4.26
253 254 0.037326 TCGCGACCAAAAGATCAGCT 60.037 50.000 3.71 0.00 0.00 4.24
254 255 0.095935 CGCGACCAAAAGATCAGCTG 59.904 55.000 7.63 7.63 0.00 4.24
255 256 0.449388 GCGACCAAAAGATCAGCTGG 59.551 55.000 15.13 0.00 34.95 4.85
256 257 0.449388 CGACCAAAAGATCAGCTGGC 59.551 55.000 15.13 6.63 31.74 4.85
257 258 0.449388 GACCAAAAGATCAGCTGGCG 59.551 55.000 15.13 0.00 31.74 5.69
258 259 0.962356 ACCAAAAGATCAGCTGGCGG 60.962 55.000 15.13 6.63 31.74 6.13
259 260 0.677731 CCAAAAGATCAGCTGGCGGA 60.678 55.000 15.13 0.00 0.00 5.54
260 261 0.449388 CAAAAGATCAGCTGGCGGAC 59.551 55.000 15.13 1.37 0.00 4.79
261 262 1.021390 AAAAGATCAGCTGGCGGACG 61.021 55.000 15.13 0.00 0.00 4.79
262 263 4.521062 AGATCAGCTGGCGGACGC 62.521 66.667 15.13 8.39 41.06 5.19
284 285 5.643379 CGTAGCATGGCCCATAATTATTT 57.357 39.130 0.00 0.00 0.00 1.40
285 286 6.024552 CGTAGCATGGCCCATAATTATTTT 57.975 37.500 0.00 0.00 0.00 1.82
286 287 7.151999 CGTAGCATGGCCCATAATTATTTTA 57.848 36.000 0.00 0.00 0.00 1.52
287 288 7.598278 CGTAGCATGGCCCATAATTATTTTAA 58.402 34.615 0.00 0.00 0.00 1.52
288 289 7.540745 CGTAGCATGGCCCATAATTATTTTAAC 59.459 37.037 0.00 0.00 0.00 2.01
289 290 7.372260 AGCATGGCCCATAATTATTTTAACA 57.628 32.000 0.00 0.00 0.00 2.41
290 291 7.976712 AGCATGGCCCATAATTATTTTAACAT 58.023 30.769 0.00 0.00 0.00 2.71
291 292 9.099071 AGCATGGCCCATAATTATTTTAACATA 57.901 29.630 0.00 0.00 0.00 2.29
292 293 9.369904 GCATGGCCCATAATTATTTTAACATAG 57.630 33.333 0.00 0.00 0.00 2.23
355 356 3.051210 AAAAAGGGAGCGCCTTGC 58.949 55.556 2.29 0.00 46.98 4.01
406 407 3.294493 GCTGGAGGGTGCGCAAAA 61.294 61.111 14.00 0.00 0.00 2.44
407 408 2.639327 GCTGGAGGGTGCGCAAAAT 61.639 57.895 14.00 0.00 0.00 1.82
408 409 1.312371 GCTGGAGGGTGCGCAAAATA 61.312 55.000 14.00 0.00 0.00 1.40
409 410 0.734889 CTGGAGGGTGCGCAAAATAG 59.265 55.000 14.00 2.13 0.00 1.73
410 411 0.679640 TGGAGGGTGCGCAAAATAGG 60.680 55.000 14.00 0.00 0.00 2.57
411 412 1.384222 GGAGGGTGCGCAAAATAGGG 61.384 60.000 14.00 0.00 0.00 3.53
412 413 1.379843 AGGGTGCGCAAAATAGGGG 60.380 57.895 14.00 0.00 0.00 4.79
413 414 2.494445 GGTGCGCAAAATAGGGGC 59.506 61.111 14.00 0.00 43.69 5.80
414 415 2.052104 GGTGCGCAAAATAGGGGCT 61.052 57.895 14.00 0.00 43.77 5.19
415 416 1.433471 GTGCGCAAAATAGGGGCTC 59.567 57.895 14.00 0.00 43.77 4.70
416 417 1.752694 TGCGCAAAATAGGGGCTCC 60.753 57.895 8.16 0.00 43.77 4.70
430 431 1.376037 GCTCCCAGGGTCAAAGTCG 60.376 63.158 5.01 0.00 0.00 4.18
457 458 4.337060 GTGAAAACGGTGCGGCCC 62.337 66.667 0.00 0.00 0.00 5.80
482 483 5.507315 GGTCGTTTTGGATTCATTTCACACT 60.507 40.000 0.00 0.00 0.00 3.55
483 484 5.399301 GTCGTTTTGGATTCATTTCACACTG 59.601 40.000 0.00 0.00 0.00 3.66
540 556 2.290071 GGAACCCTCCGAAATCTGAACA 60.290 50.000 0.00 0.00 30.03 3.18
723 796 2.125793 GCCCACGACTCGGGTAAC 60.126 66.667 2.98 0.00 46.40 2.50
847 920 2.361119 TCCTCAGTATCGGTTCATTCGG 59.639 50.000 0.00 0.00 0.00 4.30
921 994 9.581099 AAAAGTTCGCTCTTTTATCTTCAAAAA 57.419 25.926 13.01 0.00 43.12 1.94
967 1040 7.963532 AGTAAAAGTCAGGAGTAATCTGAACA 58.036 34.615 0.00 0.00 42.13 3.18
998 1250 1.952635 GGGACGTCACGGTGTTCAC 60.953 63.158 18.91 1.16 0.00 3.18
1053 1305 2.989571 AGGAGGAGGAATTGTGGAAACT 59.010 45.455 0.00 0.00 0.00 2.66
1330 1582 2.027625 CGCCGGACCAAGAACTGTC 61.028 63.158 5.05 0.00 0.00 3.51
1624 1879 2.030562 CAACGGACGCCTCCAACT 59.969 61.111 2.54 0.00 36.12 3.16
1747 2002 2.228582 CGATTCCAAAAGGTGCATGTCA 59.771 45.455 0.00 0.00 0.00 3.58
1761 2016 0.396435 ATGTCAAGGAACCGAGCACA 59.604 50.000 0.00 0.00 0.00 4.57
1816 2071 2.814805 AAGGTATGAGCAGCACCATT 57.185 45.000 5.74 0.00 34.62 3.16
1932 2196 2.754552 ACGCCATTAGTTGATGCACATT 59.245 40.909 0.00 0.00 0.00 2.71
1933 2197 3.193267 ACGCCATTAGTTGATGCACATTT 59.807 39.130 0.00 0.00 0.00 2.32
1948 2212 4.515191 TGCACATTTTCACCTAGTCACTTC 59.485 41.667 0.00 0.00 0.00 3.01
1949 2213 4.083271 GCACATTTTCACCTAGTCACTTCC 60.083 45.833 0.00 0.00 0.00 3.46
1967 2231 4.831710 ACTTCCGAAGTACTACCTCTGTTT 59.168 41.667 12.24 0.00 40.69 2.83
1968 2232 5.048154 ACTTCCGAAGTACTACCTCTGTTTC 60.048 44.000 12.24 0.00 40.69 2.78
1969 2233 4.660168 TCCGAAGTACTACCTCTGTTTCT 58.340 43.478 0.00 0.00 0.00 2.52
1971 2235 5.645497 TCCGAAGTACTACCTCTGTTTCTAC 59.355 44.000 0.00 0.00 0.00 2.59
1983 2247 7.804712 ACCTCTGTTTCTACATATATACGACG 58.195 38.462 0.00 0.00 32.86 5.12
1995 2259 8.961294 ACATATATACGACGTTAATTCCTCAC 57.039 34.615 5.50 0.00 0.00 3.51
1998 2262 2.334838 ACGACGTTAATTCCTCACAGC 58.665 47.619 0.00 0.00 0.00 4.40
1999 2263 2.029290 ACGACGTTAATTCCTCACAGCT 60.029 45.455 0.00 0.00 0.00 4.24
2000 2264 2.993899 CGACGTTAATTCCTCACAGCTT 59.006 45.455 0.00 0.00 0.00 3.74
2001 2265 4.171005 CGACGTTAATTCCTCACAGCTTA 58.829 43.478 0.00 0.00 0.00 3.09
2002 2266 4.624024 CGACGTTAATTCCTCACAGCTTAA 59.376 41.667 0.00 0.00 0.00 1.85
2003 2267 5.220228 CGACGTTAATTCCTCACAGCTTAAG 60.220 44.000 0.00 0.00 0.00 1.85
2005 2269 5.995897 ACGTTAATTCCTCACAGCTTAAGTT 59.004 36.000 4.02 0.00 0.00 2.66
2006 2270 6.073222 ACGTTAATTCCTCACAGCTTAAGTTG 60.073 38.462 16.83 16.83 0.00 3.16
2009 2273 5.948992 ATTCCTCACAGCTTAAGTTGAAC 57.051 39.130 24.12 0.00 0.00 3.18
2013 2277 2.878406 TCACAGCTTAAGTTGAACTGCC 59.122 45.455 24.12 0.00 31.46 4.85
2014 2278 2.618241 CACAGCTTAAGTTGAACTGCCA 59.382 45.455 24.12 0.00 31.46 4.92
2015 2279 3.066621 CACAGCTTAAGTTGAACTGCCAA 59.933 43.478 24.12 0.00 31.46 4.52
2016 2280 3.699038 ACAGCTTAAGTTGAACTGCCAAA 59.301 39.130 24.12 0.00 31.46 3.28
2017 2281 4.159506 ACAGCTTAAGTTGAACTGCCAAAA 59.840 37.500 24.12 0.00 31.46 2.44
2018 2282 5.108517 CAGCTTAAGTTGAACTGCCAAAAA 58.891 37.500 13.61 0.00 0.00 1.94
2019 2283 5.232838 CAGCTTAAGTTGAACTGCCAAAAAG 59.767 40.000 13.61 0.00 0.00 2.27
2020 2284 5.105351 AGCTTAAGTTGAACTGCCAAAAAGT 60.105 36.000 0.00 0.00 0.00 2.66
2021 2285 5.232202 GCTTAAGTTGAACTGCCAAAAAGTC 59.768 40.000 0.00 0.00 0.00 3.01
2022 2286 6.524101 TTAAGTTGAACTGCCAAAAAGTCT 57.476 33.333 0.00 0.00 0.00 3.24
2023 2287 5.405935 AAGTTGAACTGCCAAAAAGTCTT 57.594 34.783 0.00 0.00 0.00 3.01
2024 2288 6.524101 AAGTTGAACTGCCAAAAAGTCTTA 57.476 33.333 0.00 0.00 0.00 2.10
2025 2289 6.715347 AGTTGAACTGCCAAAAAGTCTTAT 57.285 33.333 0.00 0.00 0.00 1.73
2026 2290 6.507023 AGTTGAACTGCCAAAAAGTCTTATG 58.493 36.000 0.00 0.00 0.00 1.90
2027 2291 6.096846 AGTTGAACTGCCAAAAAGTCTTATGT 59.903 34.615 0.00 0.00 0.00 2.29
2028 2292 6.463995 TGAACTGCCAAAAAGTCTTATGTT 57.536 33.333 0.00 0.00 0.00 2.71
2029 2293 6.872920 TGAACTGCCAAAAAGTCTTATGTTT 58.127 32.000 0.00 0.00 0.00 2.83
2030 2294 8.001881 TGAACTGCCAAAAAGTCTTATGTTTA 57.998 30.769 0.00 0.00 0.00 2.01
2031 2295 8.134895 TGAACTGCCAAAAAGTCTTATGTTTAG 58.865 33.333 0.00 0.00 0.00 1.85
2032 2296 7.582667 ACTGCCAAAAAGTCTTATGTTTAGT 57.417 32.000 0.00 0.00 0.00 2.24
2033 2297 8.007405 ACTGCCAAAAAGTCTTATGTTTAGTT 57.993 30.769 0.00 0.00 0.00 2.24
2034 2298 8.474831 ACTGCCAAAAAGTCTTATGTTTAGTTT 58.525 29.630 0.00 0.00 0.00 2.66
2035 2299 9.959749 CTGCCAAAAAGTCTTATGTTTAGTTTA 57.040 29.630 0.00 0.00 0.00 2.01
2050 2314 9.606631 ATGTTTAGTTTAAATTGAACTGCCAAA 57.393 25.926 12.58 3.81 37.84 3.28
2051 2315 9.436957 TGTTTAGTTTAAATTGAACTGCCAAAA 57.563 25.926 12.58 3.50 37.84 2.44
2086 2350 7.917720 TTAGTTTAAATCGAACTGCCAAAAC 57.082 32.000 0.00 0.00 37.84 2.43
2087 2351 4.973663 AGTTTAAATCGAACTGCCAAAACG 59.026 37.500 0.00 0.00 36.08 3.60
2088 2352 4.555348 TTAAATCGAACTGCCAAAACGT 57.445 36.364 0.00 0.00 0.00 3.99
2089 2353 2.681152 AATCGAACTGCCAAAACGTC 57.319 45.000 0.00 0.00 0.00 4.34
2090 2354 1.878953 ATCGAACTGCCAAAACGTCT 58.121 45.000 0.00 0.00 0.00 4.18
2091 2355 1.658994 TCGAACTGCCAAAACGTCTT 58.341 45.000 0.00 0.00 0.00 3.01
2092 2356 2.823984 TCGAACTGCCAAAACGTCTTA 58.176 42.857 0.00 0.00 0.00 2.10
2093 2357 3.395639 TCGAACTGCCAAAACGTCTTAT 58.604 40.909 0.00 0.00 0.00 1.73
2094 2358 4.558178 TCGAACTGCCAAAACGTCTTATA 58.442 39.130 0.00 0.00 0.00 0.98
2095 2359 5.172934 TCGAACTGCCAAAACGTCTTATAT 58.827 37.500 0.00 0.00 0.00 0.86
2096 2360 5.640357 TCGAACTGCCAAAACGTCTTATATT 59.360 36.000 0.00 0.00 0.00 1.28
2097 2361 6.148150 TCGAACTGCCAAAACGTCTTATATTT 59.852 34.615 0.00 0.00 0.00 1.40
2098 2362 7.331440 TCGAACTGCCAAAACGTCTTATATTTA 59.669 33.333 0.00 0.00 0.00 1.40
2099 2363 7.634817 CGAACTGCCAAAACGTCTTATATTTAG 59.365 37.037 0.00 0.00 0.00 1.85
2100 2364 7.316544 ACTGCCAAAACGTCTTATATTTAGG 57.683 36.000 0.00 0.00 0.00 2.69
2101 2365 7.107542 ACTGCCAAAACGTCTTATATTTAGGA 58.892 34.615 0.00 0.00 0.00 2.94
2102 2366 7.608761 ACTGCCAAAACGTCTTATATTTAGGAA 59.391 33.333 0.00 0.00 0.00 3.36
2103 2367 8.514330 TGCCAAAACGTCTTATATTTAGGAAT 57.486 30.769 0.00 0.00 0.00 3.01
2104 2368 9.616156 TGCCAAAACGTCTTATATTTAGGAATA 57.384 29.630 0.00 0.00 32.56 1.75
2111 2375 8.804204 ACGTCTTATATTTAGGAATAGAGGGTG 58.196 37.037 0.00 0.00 31.58 4.61
2122 2386 7.619512 AGGAATAGAGGGTGTATAAGGAAAG 57.380 40.000 0.00 0.00 0.00 2.62
2124 2388 6.557633 GGAATAGAGGGTGTATAAGGAAAGGA 59.442 42.308 0.00 0.00 0.00 3.36
2133 2397 5.886474 GTGTATAAGGAAAGGAAAGGGAAGG 59.114 44.000 0.00 0.00 0.00 3.46
2135 2399 5.878484 ATAAGGAAAGGAAAGGGAAGGAA 57.122 39.130 0.00 0.00 0.00 3.36
2137 2401 4.552883 AGGAAAGGAAAGGGAAGGAAAA 57.447 40.909 0.00 0.00 0.00 2.29
2138 2402 5.093236 AGGAAAGGAAAGGGAAGGAAAAT 57.907 39.130 0.00 0.00 0.00 1.82
2153 2418 9.262358 GGGAAGGAAAATGAGTATATATATCGC 57.738 37.037 0.00 0.00 0.00 4.58
2174 2439 3.397482 CAGTTAGCTATGGTCAGATGCC 58.603 50.000 0.00 0.00 0.00 4.40
2235 2509 4.608170 ACCCATGTTCCATTGGATAAGT 57.392 40.909 6.15 0.00 34.81 2.24
2239 2513 5.068198 CCCATGTTCCATTGGATAAGTTGAG 59.932 44.000 6.15 0.00 34.81 3.02
2265 2539 8.696410 ATAATTTACAATTTGTGTTTAGGGCG 57.304 30.769 12.30 0.00 41.98 6.13
2270 2544 0.665835 TTTGTGTTTAGGGCGCTGTG 59.334 50.000 14.51 0.00 0.00 3.66
2278 2570 4.338710 GGGCGCTGTGGGGTACAA 62.339 66.667 7.64 0.00 39.20 2.41
2291 2583 6.307776 TGTGGGGTACAATAAGTTGAAATGA 58.692 36.000 0.00 0.00 38.71 2.57
2293 2585 7.122055 TGTGGGGTACAATAAGTTGAAATGATC 59.878 37.037 0.00 0.00 38.71 2.92
2295 2587 7.671819 TGGGGTACAATAAGTTGAAATGATCAA 59.328 33.333 0.00 0.00 45.71 2.57
2316 2608 1.136828 TTGTGTTAGAGGGCTGTGGT 58.863 50.000 0.00 0.00 0.00 4.16
2317 2609 0.396435 TGTGTTAGAGGGCTGTGGTG 59.604 55.000 0.00 0.00 0.00 4.17
2320 2612 0.955919 GTTAGAGGGCTGTGGTGTGC 60.956 60.000 0.00 0.00 0.00 4.57
2339 2631 0.676466 CACCCTTGCAGCGTTGGATA 60.676 55.000 0.16 0.00 0.00 2.59
2340 2632 0.676782 ACCCTTGCAGCGTTGGATAC 60.677 55.000 0.16 0.00 0.00 2.24
2387 2679 1.662629 CATTTAGAGCGTGGCAGAGTG 59.337 52.381 0.00 0.00 0.00 3.51
2410 2718 9.338622 AGTGCCCTTACATTAAGTTTGATATAC 57.661 33.333 0.00 0.00 33.96 1.47
2473 2781 4.980434 ACGCCGTATGTATAAATCAGTGAC 59.020 41.667 0.00 0.00 0.00 3.67
2523 2831 9.719355 TTTCTAATGAGTAGCATTTGTAAGTGA 57.281 29.630 0.00 0.00 44.68 3.41
2703 3032 1.301677 GCACTAACCACCTCTGCAGC 61.302 60.000 9.47 0.00 0.00 5.25
2895 3266 4.635473 AGGGGAGAAGGATAAGTTGATCA 58.365 43.478 0.00 0.00 0.00 2.92
3161 3533 2.125552 TGGCGTCTCATTGGAGCG 60.126 61.111 0.00 0.00 41.13 5.03
3183 3578 2.289945 CCTCCAGGGTTTGTCTTCTCTG 60.290 54.545 0.00 0.00 0.00 3.35
3261 3685 7.908601 GGTCTTAATGTTTCTTTTATACTGCGG 59.091 37.037 0.00 0.00 0.00 5.69
3344 3770 4.319177 GCCCATACAGTGTCATCCTATTC 58.681 47.826 0.00 0.00 0.00 1.75
3515 3941 1.272147 GCAGGAATGTCTGGGGAAACT 60.272 52.381 0.00 0.00 35.43 2.66
3625 4051 2.300152 CCTCTCTGCTGGTTGTTACTCA 59.700 50.000 0.00 0.00 0.00 3.41
4133 4595 0.919710 GGCCACTCCCACTAGGAATT 59.080 55.000 0.00 0.00 46.94 2.17
4185 4647 4.497291 AGACTAAACCACCTTGTGTTGA 57.503 40.909 0.00 0.00 0.00 3.18
4260 4722 5.274881 CTTAACGCCTAAGCATCATCATC 57.725 43.478 0.00 0.00 39.83 2.92
4261 4723 2.916702 ACGCCTAAGCATCATCATCA 57.083 45.000 0.00 0.00 39.83 3.07
4262 4724 3.413846 ACGCCTAAGCATCATCATCAT 57.586 42.857 0.00 0.00 39.83 2.45
4263 4725 3.332919 ACGCCTAAGCATCATCATCATC 58.667 45.455 0.00 0.00 39.83 2.92
4264 4726 3.244318 ACGCCTAAGCATCATCATCATCA 60.244 43.478 0.00 0.00 39.83 3.07
4265 4727 3.939592 CGCCTAAGCATCATCATCATCAT 59.060 43.478 0.00 0.00 39.83 2.45
4266 4728 4.034163 CGCCTAAGCATCATCATCATCATC 59.966 45.833 0.00 0.00 39.83 2.92
4267 4729 4.941873 GCCTAAGCATCATCATCATCATCA 59.058 41.667 0.00 0.00 39.53 3.07
4268 4730 5.590663 GCCTAAGCATCATCATCATCATCAT 59.409 40.000 0.00 0.00 39.53 2.45
4269 4731 6.458888 GCCTAAGCATCATCATCATCATCATG 60.459 42.308 0.00 0.00 39.53 3.07
4270 4732 5.904362 AAGCATCATCATCATCATCATGG 57.096 39.130 0.00 0.00 0.00 3.66
4271 4733 4.923415 AGCATCATCATCATCATCATGGT 58.077 39.130 0.00 0.00 0.00 3.55
4272 4734 4.944317 AGCATCATCATCATCATCATGGTC 59.056 41.667 0.00 0.00 0.00 4.02
4286 4748 0.331616 ATGGTCCTGGGCCAAACTAC 59.668 55.000 26.11 3.09 39.72 2.73
4318 4780 6.371809 TTTACAAGAACTAAACAGCCACTG 57.628 37.500 0.00 0.00 37.52 3.66
4354 4816 4.514066 AGTGACGACTAAACAAAATCCACC 59.486 41.667 0.00 0.00 0.00 4.61
4365 4827 6.753107 AACAAAATCCACCTAATTACTCCG 57.247 37.500 0.00 0.00 0.00 4.63
4380 4842 0.673644 CTCCGGCCACCTTGTACAAG 60.674 60.000 25.79 25.79 38.14 3.16
4387 4849 2.878117 GCCACCTTGTACAAGCATACCA 60.878 50.000 27.05 0.00 37.11 3.25
4395 4857 2.276732 ACAAGCATACCAACAGCACT 57.723 45.000 0.00 0.00 0.00 4.40
4396 4858 2.586425 ACAAGCATACCAACAGCACTT 58.414 42.857 0.00 0.00 0.00 3.16
4397 4859 2.294233 ACAAGCATACCAACAGCACTTG 59.706 45.455 0.00 0.00 39.09 3.16
4398 4860 2.276732 AGCATACCAACAGCACTTGT 57.723 45.000 0.00 0.00 43.45 3.16
4399 4861 1.881973 AGCATACCAACAGCACTTGTG 59.118 47.619 0.00 0.00 40.74 3.33
4400 4862 1.666888 GCATACCAACAGCACTTGTGC 60.667 52.381 16.98 16.98 40.74 4.57
4401 4863 0.874390 ATACCAACAGCACTTGTGCG 59.126 50.000 18.32 15.36 40.74 5.34
4420 4882 0.036952 GTTGTGCCAGCAGAGCTAGA 60.037 55.000 0.00 0.00 36.40 2.43
4440 4902 2.422832 GAGACGGTAGACCTAGGTGTTG 59.577 54.545 22.10 11.37 0.00 3.33
4444 4906 2.165845 CGGTAGACCTAGGTGTTGAAGG 59.834 54.545 22.10 0.01 36.42 3.46
4459 4921 6.475402 GGTGTTGAAGGAAAATTACACAACAG 59.525 38.462 15.92 0.00 43.73 3.16
4479 4941 7.039504 ACAACAGGCTCACAATCAAAGATAAAT 60.040 33.333 0.00 0.00 0.00 1.40
4480 4942 7.093322 ACAGGCTCACAATCAAAGATAAATC 57.907 36.000 0.00 0.00 0.00 2.17
4485 4947 8.844244 GGCTCACAATCAAAGATAAATCAGTAT 58.156 33.333 0.00 0.00 0.00 2.12
4506 4968 9.482627 CAGTATGTTCTCTTGATTAATACTCCC 57.517 37.037 0.00 0.00 0.00 4.30
4507 4969 9.440761 AGTATGTTCTCTTGATTAATACTCCCT 57.559 33.333 0.00 0.00 0.00 4.20
4508 4970 9.699703 GTATGTTCTCTTGATTAATACTCCCTC 57.300 37.037 0.00 0.00 0.00 4.30
4509 4971 7.125792 TGTTCTCTTGATTAATACTCCCTCC 57.874 40.000 0.00 0.00 0.00 4.30
4510 4972 6.183360 TGTTCTCTTGATTAATACTCCCTCCG 60.183 42.308 0.00 0.00 0.00 4.63
4511 4973 5.455872 TCTCTTGATTAATACTCCCTCCGT 58.544 41.667 0.00 0.00 0.00 4.69
4512 4974 5.535406 TCTCTTGATTAATACTCCCTCCGTC 59.465 44.000 0.00 0.00 0.00 4.79
4513 4975 4.587684 TCTTGATTAATACTCCCTCCGTCC 59.412 45.833 0.00 0.00 0.00 4.79
4514 4976 2.889045 TGATTAATACTCCCTCCGTCCG 59.111 50.000 0.00 0.00 0.00 4.79
4515 4977 2.734755 TTAATACTCCCTCCGTCCGA 57.265 50.000 0.00 0.00 0.00 4.55
4516 4978 2.734755 TAATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
4517 4979 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
4518 4980 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4519 4981 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
4520 4982 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4521 4983 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4522 4984 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4523 4985 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4524 4986 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4525 4987 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4526 4988 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4527 4989 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4528 4990 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4529 4991 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4530 4992 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4531 4993 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4532 4994 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4533 4995 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4534 4996 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4535 4997 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4536 4998 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
4537 4999 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
4538 5000 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
4602 5064 9.643693 ACATCACTTTTTATCCATTTTGATGAC 57.356 29.630 13.63 0.00 40.95 3.06
4603 5065 9.642327 CATCACTTTTTATCCATTTTGATGACA 57.358 29.630 0.00 0.00 40.95 3.58
4605 5067 9.695526 TCACTTTTTATCCATTTTGATGACAAG 57.304 29.630 0.00 0.00 37.32 3.16
4606 5068 9.480053 CACTTTTTATCCATTTTGATGACAAGT 57.520 29.630 0.00 0.00 33.86 3.16
4613 5075 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4614 5076 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4615 5077 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4616 5078 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4617 5079 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4618 5080 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4619 5081 2.690786 TGACAAGTATTTTCGGACGGG 58.309 47.619 0.00 0.00 0.00 5.28
4620 5082 2.004733 GACAAGTATTTTCGGACGGGG 58.995 52.381 0.00 0.00 0.00 5.73
4621 5083 1.339342 ACAAGTATTTTCGGACGGGGG 60.339 52.381 0.00 0.00 0.00 5.40
4642 5104 7.074653 GGGGGAAGTATATGTGTTTGATCTA 57.925 40.000 0.00 0.00 0.00 1.98
4656 5118 9.936759 TGTGTTTGATCTACATTATTACACTCA 57.063 29.630 0.00 0.00 35.59 3.41
4685 5147 6.039616 ACGAAAAATGGCGCATAATAACAAT 58.960 32.000 10.83 0.00 0.00 2.71
4686 5148 6.019961 ACGAAAAATGGCGCATAATAACAATG 60.020 34.615 10.83 0.00 0.00 2.82
4690 5152 5.710513 ATGGCGCATAATAACAATGATGT 57.289 34.783 10.83 0.00 43.14 3.06
4782 5244 5.366768 ACAAGGTTAGCAGCCTAGAATGATA 59.633 40.000 0.00 0.00 34.81 2.15
4783 5245 5.736951 AGGTTAGCAGCCTAGAATGATAG 57.263 43.478 0.00 0.00 33.97 2.08
4794 5256 8.363390 CAGCCTAGAATGATAGTAACATCAGAA 58.637 37.037 0.00 0.00 38.30 3.02
5038 5508 3.681593 TGTTCCGGAATTTCCTTCGTA 57.318 42.857 22.04 0.00 33.30 3.43
5060 5530 3.102204 CCATTCAATGCCCTTCCTTCTT 58.898 45.455 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.020617 TTCGCTGGCAGGGAGGTG 62.021 66.667 29.44 6.15 38.45 4.00
22 23 4.021925 GTTCGCTGGCAGGGAGGT 62.022 66.667 29.44 0.00 38.45 3.85
23 24 3.710722 AGTTCGCTGGCAGGGAGG 61.711 66.667 29.44 0.00 38.45 4.30
24 25 2.435586 CAGTTCGCTGGCAGGGAG 60.436 66.667 29.44 17.44 41.40 4.30
25 26 4.704833 GCAGTTCGCTGGCAGGGA 62.705 66.667 28.02 28.02 45.10 4.20
35 36 2.321060 CTTATGCGGCGCAGTTCG 59.679 61.111 38.27 22.30 43.65 3.95
36 37 2.023320 GCTTATGCGGCGCAGTTC 59.977 61.111 38.27 22.81 43.65 3.01
46 47 1.347221 CGGTTCGTTCCGCTTATGC 59.653 57.895 7.89 0.00 43.96 3.14
54 55 0.316204 TCCAGTTCTCGGTTCGTTCC 59.684 55.000 0.00 0.00 0.00 3.62
55 56 1.416373 GTCCAGTTCTCGGTTCGTTC 58.584 55.000 0.00 0.00 0.00 3.95
56 57 0.318445 CGTCCAGTTCTCGGTTCGTT 60.318 55.000 0.00 0.00 0.00 3.85
57 58 1.285023 CGTCCAGTTCTCGGTTCGT 59.715 57.895 0.00 0.00 0.00 3.85
58 59 0.318445 AACGTCCAGTTCTCGGTTCG 60.318 55.000 0.00 0.00 39.16 3.95
59 60 3.582743 AACGTCCAGTTCTCGGTTC 57.417 52.632 0.00 0.00 39.16 3.62
67 68 1.070275 GGGAACCGAACGTCCAGTT 59.930 57.895 0.00 0.00 43.23 3.16
68 69 2.739132 GGGAACCGAACGTCCAGT 59.261 61.111 0.00 0.00 40.86 4.00
77 78 3.860930 GCTTGGGCTTGGGAACCGA 62.861 63.158 0.00 0.00 44.18 4.69
78 79 3.373565 GCTTGGGCTTGGGAACCG 61.374 66.667 0.00 0.00 44.18 4.44
88 89 1.227674 CCGACTCCATAGCTTGGGC 60.228 63.158 12.99 4.96 46.45 5.36
89 90 1.447643 CCCGACTCCATAGCTTGGG 59.552 63.158 12.99 6.13 46.45 4.12
91 92 1.338136 ACCCCCGACTCCATAGCTTG 61.338 60.000 0.00 0.00 0.00 4.01
92 93 0.620700 AACCCCCGACTCCATAGCTT 60.621 55.000 0.00 0.00 0.00 3.74
93 94 0.620700 AAACCCCCGACTCCATAGCT 60.621 55.000 0.00 0.00 0.00 3.32
94 95 0.463833 CAAACCCCCGACTCCATAGC 60.464 60.000 0.00 0.00 0.00 2.97
95 96 0.909623 ACAAACCCCCGACTCCATAG 59.090 55.000 0.00 0.00 0.00 2.23
96 97 1.279846 GAACAAACCCCCGACTCCATA 59.720 52.381 0.00 0.00 0.00 2.74
97 98 0.037734 GAACAAACCCCCGACTCCAT 59.962 55.000 0.00 0.00 0.00 3.41
98 99 1.452801 GAACAAACCCCCGACTCCA 59.547 57.895 0.00 0.00 0.00 3.86
99 100 1.303074 GGAACAAACCCCCGACTCC 60.303 63.158 0.00 0.00 0.00 3.85
100 101 0.605589 CAGGAACAAACCCCCGACTC 60.606 60.000 0.00 0.00 0.00 3.36
101 102 1.454539 CAGGAACAAACCCCCGACT 59.545 57.895 0.00 0.00 0.00 4.18
102 103 1.602605 CCAGGAACAAACCCCCGAC 60.603 63.158 0.00 0.00 0.00 4.79
103 104 1.770927 TCCAGGAACAAACCCCCGA 60.771 57.895 0.00 0.00 0.00 5.14
104 105 1.303317 CTCCAGGAACAAACCCCCG 60.303 63.158 0.00 0.00 0.00 5.73
105 106 1.606601 GCTCCAGGAACAAACCCCC 60.607 63.158 0.00 0.00 0.00 5.40
106 107 0.895559 CAGCTCCAGGAACAAACCCC 60.896 60.000 0.00 0.00 0.00 4.95
107 108 0.895559 CCAGCTCCAGGAACAAACCC 60.896 60.000 0.00 0.00 0.00 4.11
108 109 0.110486 TCCAGCTCCAGGAACAAACC 59.890 55.000 0.00 0.00 30.71 3.27
109 110 2.087646 GATCCAGCTCCAGGAACAAAC 58.912 52.381 0.00 0.00 38.93 2.93
110 111 1.704628 TGATCCAGCTCCAGGAACAAA 59.295 47.619 0.00 0.00 38.93 2.83
111 112 1.003580 GTGATCCAGCTCCAGGAACAA 59.996 52.381 3.47 0.00 39.28 2.83
112 113 0.615331 GTGATCCAGCTCCAGGAACA 59.385 55.000 0.00 0.00 38.93 3.18
113 114 0.908198 AGTGATCCAGCTCCAGGAAC 59.092 55.000 0.00 0.00 38.93 3.62
114 115 1.280133 CAAGTGATCCAGCTCCAGGAA 59.720 52.381 0.00 0.00 38.93 3.36
115 116 0.907486 CAAGTGATCCAGCTCCAGGA 59.093 55.000 0.00 0.00 39.97 3.86
116 117 0.747283 GCAAGTGATCCAGCTCCAGG 60.747 60.000 0.00 0.00 0.00 4.45
117 118 0.035725 TGCAAGTGATCCAGCTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
118 119 0.401356 TTGCAAGTGATCCAGCTCCA 59.599 50.000 0.00 0.00 0.00 3.86
119 120 1.674962 GATTGCAAGTGATCCAGCTCC 59.325 52.381 4.94 0.00 0.00 4.70
120 121 2.613133 GAGATTGCAAGTGATCCAGCTC 59.387 50.000 4.94 0.00 0.00 4.09
121 122 2.239150 AGAGATTGCAAGTGATCCAGCT 59.761 45.455 4.94 0.00 0.00 4.24
122 123 2.355132 CAGAGATTGCAAGTGATCCAGC 59.645 50.000 4.94 0.00 0.00 4.85
135 136 5.735354 GCCTAATGATGTTTGGCAGAGATTG 60.735 44.000 8.08 0.00 42.79 2.67
136 137 4.340381 GCCTAATGATGTTTGGCAGAGATT 59.660 41.667 8.08 0.00 42.79 2.40
137 138 3.887716 GCCTAATGATGTTTGGCAGAGAT 59.112 43.478 8.08 0.00 42.79 2.75
138 139 3.054139 AGCCTAATGATGTTTGGCAGAGA 60.054 43.478 13.94 0.00 45.42 3.10
139 140 3.285484 AGCCTAATGATGTTTGGCAGAG 58.715 45.455 13.94 0.00 45.42 3.35
140 141 3.370840 AGCCTAATGATGTTTGGCAGA 57.629 42.857 13.94 0.00 45.42 4.26
141 142 3.194116 ACAAGCCTAATGATGTTTGGCAG 59.806 43.478 13.94 9.13 45.42 4.85
142 143 3.056678 CACAAGCCTAATGATGTTTGGCA 60.057 43.478 13.94 0.00 45.42 4.92
143 144 3.056607 ACACAAGCCTAATGATGTTTGGC 60.057 43.478 5.32 5.32 43.52 4.52
144 145 4.789012 ACACAAGCCTAATGATGTTTGG 57.211 40.909 0.00 0.00 0.00 3.28
145 146 6.803320 CAGTAACACAAGCCTAATGATGTTTG 59.197 38.462 0.00 0.00 32.76 2.93
146 147 6.714810 TCAGTAACACAAGCCTAATGATGTTT 59.285 34.615 0.00 0.00 32.76 2.83
147 148 6.237901 TCAGTAACACAAGCCTAATGATGTT 58.762 36.000 0.00 0.00 34.77 2.71
148 149 5.804639 TCAGTAACACAAGCCTAATGATGT 58.195 37.500 0.00 0.00 0.00 3.06
149 150 6.741992 TTCAGTAACACAAGCCTAATGATG 57.258 37.500 0.00 0.00 0.00 3.07
150 151 6.714810 TGTTTCAGTAACACAAGCCTAATGAT 59.285 34.615 0.00 0.00 41.73 2.45
151 152 6.058833 TGTTTCAGTAACACAAGCCTAATGA 58.941 36.000 0.00 0.00 41.73 2.57
152 153 6.312399 TGTTTCAGTAACACAAGCCTAATG 57.688 37.500 0.00 0.00 41.73 1.90
174 175 8.026341 ACATCAAGATCGCAACATAGATTATG 57.974 34.615 0.00 0.00 41.88 1.90
175 176 8.613060 AACATCAAGATCGCAACATAGATTAT 57.387 30.769 0.00 0.00 0.00 1.28
176 177 8.437360 AAACATCAAGATCGCAACATAGATTA 57.563 30.769 0.00 0.00 0.00 1.75
177 178 6.932356 AACATCAAGATCGCAACATAGATT 57.068 33.333 0.00 0.00 0.00 2.40
178 179 6.765036 AGAAACATCAAGATCGCAACATAGAT 59.235 34.615 0.00 0.00 0.00 1.98
179 180 6.108687 AGAAACATCAAGATCGCAACATAGA 58.891 36.000 0.00 0.00 0.00 1.98
180 181 6.355397 AGAAACATCAAGATCGCAACATAG 57.645 37.500 0.00 0.00 0.00 2.23
181 182 7.333174 TGTTAGAAACATCAAGATCGCAACATA 59.667 33.333 0.00 0.00 36.25 2.29
182 183 6.149308 TGTTAGAAACATCAAGATCGCAACAT 59.851 34.615 0.00 0.00 36.25 2.71
183 184 5.468409 TGTTAGAAACATCAAGATCGCAACA 59.532 36.000 0.00 0.00 36.25 3.33
184 185 5.927030 TGTTAGAAACATCAAGATCGCAAC 58.073 37.500 0.00 0.00 36.25 4.17
185 186 6.552859 TTGTTAGAAACATCAAGATCGCAA 57.447 33.333 0.00 0.00 41.79 4.85
186 187 6.552859 TTTGTTAGAAACATCAAGATCGCA 57.447 33.333 0.00 0.00 41.79 5.10
187 188 5.509622 GCTTTGTTAGAAACATCAAGATCGC 59.490 40.000 7.91 0.00 41.79 4.58
188 189 6.835914 AGCTTTGTTAGAAACATCAAGATCG 58.164 36.000 7.91 0.00 41.79 3.69
189 190 8.510505 AGAAGCTTTGTTAGAAACATCAAGATC 58.489 33.333 0.00 5.82 41.79 2.75
190 191 8.295288 CAGAAGCTTTGTTAGAAACATCAAGAT 58.705 33.333 0.00 0.54 41.79 2.40
191 192 7.283127 ACAGAAGCTTTGTTAGAAACATCAAGA 59.717 33.333 0.00 0.00 41.79 3.02
192 193 7.420800 ACAGAAGCTTTGTTAGAAACATCAAG 58.579 34.615 0.00 0.00 41.79 3.02
193 194 7.333528 ACAGAAGCTTTGTTAGAAACATCAA 57.666 32.000 0.00 0.00 41.79 2.57
194 195 6.942532 ACAGAAGCTTTGTTAGAAACATCA 57.057 33.333 0.00 0.00 41.79 3.07
195 196 6.142958 GCAACAGAAGCTTTGTTAGAAACATC 59.857 38.462 19.63 0.00 41.79 3.06
196 197 5.979517 GCAACAGAAGCTTTGTTAGAAACAT 59.020 36.000 19.63 1.67 41.79 2.71
197 198 5.105957 TGCAACAGAAGCTTTGTTAGAAACA 60.106 36.000 19.63 13.10 36.67 2.83
198 199 5.339990 TGCAACAGAAGCTTTGTTAGAAAC 58.660 37.500 19.63 11.55 36.67 2.78
199 200 5.574891 TGCAACAGAAGCTTTGTTAGAAA 57.425 34.783 19.63 8.74 36.67 2.52
200 201 5.356751 TCTTGCAACAGAAGCTTTGTTAGAA 59.643 36.000 19.63 15.33 36.67 2.10
201 202 4.881273 TCTTGCAACAGAAGCTTTGTTAGA 59.119 37.500 19.63 16.90 36.67 2.10
202 203 5.173774 TCTTGCAACAGAAGCTTTGTTAG 57.826 39.130 19.63 15.56 36.67 2.34
203 204 5.560760 CGATCTTGCAACAGAAGCTTTGTTA 60.561 40.000 19.63 9.81 36.67 2.41
204 205 4.614946 GATCTTGCAACAGAAGCTTTGTT 58.385 39.130 16.38 16.38 39.23 2.83
205 206 3.304257 CGATCTTGCAACAGAAGCTTTGT 60.304 43.478 0.00 4.42 0.00 2.83
206 207 3.231965 CGATCTTGCAACAGAAGCTTTG 58.768 45.455 0.00 3.74 0.00 2.77
207 208 2.227388 CCGATCTTGCAACAGAAGCTTT 59.773 45.455 0.00 0.00 0.00 3.51
208 209 1.808945 CCGATCTTGCAACAGAAGCTT 59.191 47.619 0.00 0.00 0.00 3.74
209 210 1.002430 TCCGATCTTGCAACAGAAGCT 59.998 47.619 0.00 0.00 0.00 3.74
210 211 1.129437 GTCCGATCTTGCAACAGAAGC 59.871 52.381 0.00 0.00 0.00 3.86
211 212 1.391485 CGTCCGATCTTGCAACAGAAG 59.609 52.381 0.00 0.00 0.00 2.85
212 213 1.428448 CGTCCGATCTTGCAACAGAA 58.572 50.000 0.00 0.00 0.00 3.02
213 214 0.389817 CCGTCCGATCTTGCAACAGA 60.390 55.000 0.00 0.00 0.00 3.41
214 215 1.970917 GCCGTCCGATCTTGCAACAG 61.971 60.000 0.00 0.00 0.00 3.16
215 216 2.032634 GCCGTCCGATCTTGCAACA 61.033 57.895 0.00 0.00 0.00 3.33
216 217 1.696832 GAGCCGTCCGATCTTGCAAC 61.697 60.000 0.00 0.00 0.00 4.17
217 218 1.447838 GAGCCGTCCGATCTTGCAA 60.448 57.895 0.00 0.00 0.00 4.08
218 219 2.184322 GAGCCGTCCGATCTTGCA 59.816 61.111 0.00 0.00 0.00 4.08
219 220 2.956964 CGAGCCGTCCGATCTTGC 60.957 66.667 0.00 0.00 0.00 4.01
220 221 2.956964 GCGAGCCGTCCGATCTTG 60.957 66.667 0.00 0.00 0.00 3.02
221 222 4.554363 CGCGAGCCGTCCGATCTT 62.554 66.667 0.00 0.00 0.00 2.40
228 229 3.011760 CTTTTGGTCGCGAGCCGTC 62.012 63.158 32.88 10.57 38.35 4.79
229 230 2.781595 ATCTTTTGGTCGCGAGCCGT 62.782 55.000 32.88 11.38 38.35 5.68
230 231 2.025359 GATCTTTTGGTCGCGAGCCG 62.025 60.000 32.88 19.05 38.61 5.52
231 232 1.019278 TGATCTTTTGGTCGCGAGCC 61.019 55.000 32.88 24.53 0.00 4.70
232 233 0.371645 CTGATCTTTTGGTCGCGAGC 59.628 55.000 30.17 30.17 0.00 5.03
233 234 0.371645 GCTGATCTTTTGGTCGCGAG 59.628 55.000 10.24 0.00 0.00 5.03
234 235 0.037326 AGCTGATCTTTTGGTCGCGA 60.037 50.000 3.71 3.71 0.00 5.87
235 236 0.095935 CAGCTGATCTTTTGGTCGCG 59.904 55.000 8.42 0.00 0.00 5.87
236 237 0.449388 CCAGCTGATCTTTTGGTCGC 59.551 55.000 17.39 0.00 0.00 5.19
237 238 0.449388 GCCAGCTGATCTTTTGGTCG 59.551 55.000 17.39 0.00 33.21 4.79
238 239 0.449388 CGCCAGCTGATCTTTTGGTC 59.551 55.000 17.39 0.00 33.21 4.02
239 240 0.962356 CCGCCAGCTGATCTTTTGGT 60.962 55.000 17.39 0.00 33.21 3.67
240 241 0.677731 TCCGCCAGCTGATCTTTTGG 60.678 55.000 17.39 5.91 0.00 3.28
241 242 0.449388 GTCCGCCAGCTGATCTTTTG 59.551 55.000 17.39 0.00 0.00 2.44
242 243 1.021390 CGTCCGCCAGCTGATCTTTT 61.021 55.000 17.39 0.00 0.00 2.27
243 244 1.448540 CGTCCGCCAGCTGATCTTT 60.449 57.895 17.39 0.00 0.00 2.52
244 245 2.185350 CGTCCGCCAGCTGATCTT 59.815 61.111 17.39 0.00 0.00 2.40
245 246 4.521062 GCGTCCGCCAGCTGATCT 62.521 66.667 17.39 0.00 34.56 2.75
252 253 4.873129 ATGCTACGCGTCCGCCAG 62.873 66.667 18.63 8.62 38.22 4.85
258 259 2.709125 TATGGGCCATGCTACGCGTC 62.709 60.000 29.14 1.99 0.00 5.19
259 260 2.318519 TTATGGGCCATGCTACGCGT 62.319 55.000 29.14 19.17 0.00 6.01
260 261 0.955428 ATTATGGGCCATGCTACGCG 60.955 55.000 29.14 3.53 0.00 6.01
261 262 1.247567 AATTATGGGCCATGCTACGC 58.752 50.000 29.14 0.00 0.00 4.42
262 263 5.643379 AAATAATTATGGGCCATGCTACG 57.357 39.130 29.14 0.00 0.00 3.51
263 264 8.364142 TGTTAAAATAATTATGGGCCATGCTAC 58.636 33.333 29.14 11.59 0.00 3.58
264 265 8.484214 TGTTAAAATAATTATGGGCCATGCTA 57.516 30.769 29.14 16.38 0.00 3.49
265 266 7.372260 TGTTAAAATAATTATGGGCCATGCT 57.628 32.000 29.14 14.74 0.00 3.79
266 267 9.369904 CTATGTTAAAATAATTATGGGCCATGC 57.630 33.333 29.14 5.01 0.00 4.06
389 390 1.312371 TATTTTGCGCACCCTCCAGC 61.312 55.000 11.12 0.00 0.00 4.85
390 391 0.734889 CTATTTTGCGCACCCTCCAG 59.265 55.000 11.12 0.00 0.00 3.86
391 392 0.679640 CCTATTTTGCGCACCCTCCA 60.680 55.000 11.12 0.00 0.00 3.86
392 393 1.384222 CCCTATTTTGCGCACCCTCC 61.384 60.000 11.12 0.00 0.00 4.30
393 394 1.384222 CCCCTATTTTGCGCACCCTC 61.384 60.000 11.12 0.00 0.00 4.30
394 395 1.379843 CCCCTATTTTGCGCACCCT 60.380 57.895 11.12 0.00 0.00 4.34
395 396 3.076258 GCCCCTATTTTGCGCACCC 62.076 63.158 11.12 0.00 0.00 4.61
396 397 2.004808 GAGCCCCTATTTTGCGCACC 62.005 60.000 11.12 0.00 0.00 5.01
397 398 1.433471 GAGCCCCTATTTTGCGCAC 59.567 57.895 11.12 0.00 0.00 5.34
398 399 1.752694 GGAGCCCCTATTTTGCGCA 60.753 57.895 5.66 5.66 0.00 6.09
399 400 2.490148 GGGAGCCCCTATTTTGCGC 61.490 63.158 0.00 0.00 41.34 6.09
400 401 1.077068 TGGGAGCCCCTATTTTGCG 60.077 57.895 11.10 0.00 45.70 4.85
401 402 0.756815 CCTGGGAGCCCCTATTTTGC 60.757 60.000 11.10 0.00 45.70 3.68
402 403 0.106015 CCCTGGGAGCCCCTATTTTG 60.106 60.000 7.01 0.00 45.70 2.44
403 404 0.555117 ACCCTGGGAGCCCCTATTTT 60.555 55.000 22.23 0.00 45.70 1.82
404 405 0.994050 GACCCTGGGAGCCCCTATTT 60.994 60.000 22.23 0.00 45.70 1.40
405 406 1.386057 GACCCTGGGAGCCCCTATT 60.386 63.158 22.23 0.00 45.70 1.73
406 407 2.208562 TTGACCCTGGGAGCCCCTAT 62.209 60.000 22.23 0.00 45.70 2.57
407 408 2.424989 TTTGACCCTGGGAGCCCCTA 62.425 60.000 22.23 0.00 45.70 3.53
408 409 3.829311 TTTGACCCTGGGAGCCCCT 62.829 63.158 22.23 0.00 45.70 4.79
409 410 3.264845 TTTGACCCTGGGAGCCCC 61.265 66.667 22.23 3.42 45.71 5.80
410 411 2.356667 CTTTGACCCTGGGAGCCC 59.643 66.667 22.23 6.01 0.00 5.19
411 412 1.002011 GACTTTGACCCTGGGAGCC 60.002 63.158 22.23 8.62 0.00 4.70
412 413 1.376037 CGACTTTGACCCTGGGAGC 60.376 63.158 22.23 11.56 0.00 4.70
413 414 0.396811 AACGACTTTGACCCTGGGAG 59.603 55.000 22.23 8.83 0.00 4.30
414 415 0.841289 AAACGACTTTGACCCTGGGA 59.159 50.000 22.23 0.00 0.00 4.37
415 416 0.951558 CAAACGACTTTGACCCTGGG 59.048 55.000 12.28 12.28 39.43 4.45
416 417 1.961793 TCAAACGACTTTGACCCTGG 58.038 50.000 0.00 0.00 40.76 4.45
420 421 1.003223 CCGGTTCAAACGACTTTGACC 60.003 52.381 0.00 5.71 44.48 4.02
430 431 1.830086 CCGTTTTCACCGGTTCAAAC 58.170 50.000 21.34 21.34 40.59 2.93
457 458 3.911964 GTGAAATGAATCCAAAACGACCG 59.088 43.478 0.00 0.00 0.00 4.79
458 459 4.679654 GTGTGAAATGAATCCAAAACGACC 59.320 41.667 0.00 0.00 0.00 4.79
504 520 3.234630 TTCCGGTGGGTCGCTCAAG 62.235 63.158 0.00 0.00 33.83 3.02
520 536 3.003480 CTGTTCAGATTTCGGAGGGTTC 58.997 50.000 0.00 0.00 0.00 3.62
723 796 6.713762 AACAGAGGAGACATGAGAGATTAG 57.286 41.667 0.00 0.00 0.00 1.73
756 829 9.810545 CAAAAGTTCACCTCTTGGTTTTTATTA 57.189 29.630 0.00 0.00 46.05 0.98
757 830 8.318412 ACAAAAGTTCACCTCTTGGTTTTTATT 58.682 29.630 0.00 0.00 46.05 1.40
758 831 7.847096 ACAAAAGTTCACCTCTTGGTTTTTAT 58.153 30.769 0.00 0.00 46.05 1.40
765 838 3.068165 GGGAACAAAAGTTCACCTCTTGG 59.932 47.826 10.16 0.00 35.19 3.61
766 839 4.307443 GGGAACAAAAGTTCACCTCTTG 57.693 45.455 10.16 0.00 35.19 3.02
847 920 1.058695 CGACGCGATTTAAGTGTCCAC 59.941 52.381 15.93 0.00 43.83 4.02
920 993 9.612066 TTACTTTGATTTGAAGGCAGAATTTTT 57.388 25.926 0.00 0.00 0.00 1.94
921 994 9.612066 TTTACTTTGATTTGAAGGCAGAATTTT 57.388 25.926 0.00 0.00 0.00 1.82
922 995 9.612066 TTTTACTTTGATTTGAAGGCAGAATTT 57.388 25.926 0.00 0.00 0.00 1.82
923 996 9.264719 CTTTTACTTTGATTTGAAGGCAGAATT 57.735 29.630 0.00 0.00 0.00 2.17
924 997 8.424133 ACTTTTACTTTGATTTGAAGGCAGAAT 58.576 29.630 0.00 0.00 0.00 2.40
925 998 7.781056 ACTTTTACTTTGATTTGAAGGCAGAA 58.219 30.769 0.00 0.00 0.00 3.02
926 999 7.068103 TGACTTTTACTTTGATTTGAAGGCAGA 59.932 33.333 0.00 0.00 0.00 4.26
967 1040 0.889186 ACGTCCCTGCAAGCGAAAAT 60.889 50.000 6.00 0.00 0.00 1.82
998 1250 1.012086 CCATGTGCTGAAGGTCATCG 58.988 55.000 0.00 0.00 0.00 3.84
1053 1305 7.064371 GCTCGATCGTAGACCTGATAAGTAATA 59.936 40.741 15.94 0.00 42.51 0.98
1434 1686 2.549992 CCCGAGATCAACTTCCACAACA 60.550 50.000 0.00 0.00 0.00 3.33
1624 1879 3.659092 CAACGCCGGCTTCAGCAA 61.659 61.111 26.68 0.00 44.36 3.91
1646 1901 1.678728 CCACACAGCGGATACAACCAT 60.679 52.381 0.00 0.00 0.00 3.55
1651 1906 2.267642 GGCCACACAGCGGATACA 59.732 61.111 0.00 0.00 0.00 2.29
1747 2002 0.249911 GACTGTGTGCTCGGTTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
1761 2016 1.076024 AGAATGGCAATGGTGGACTGT 59.924 47.619 0.00 0.00 0.00 3.55
1816 2071 1.006281 AGCATCCTGGATTTCCAAGCA 59.994 47.619 6.42 0.00 46.97 3.91
1932 2196 3.640029 ACTTCGGAAGTGACTAGGTGAAA 59.360 43.478 21.86 0.00 41.01 2.69
1933 2197 3.228453 ACTTCGGAAGTGACTAGGTGAA 58.772 45.455 21.86 0.00 41.01 3.18
1948 2212 5.413833 TGTAGAAACAGAGGTAGTACTTCGG 59.586 44.000 10.33 10.33 0.00 4.30
1949 2213 6.492007 TGTAGAAACAGAGGTAGTACTTCG 57.508 41.667 0.00 5.10 0.00 3.79
1971 2235 8.959734 TGTGAGGAATTAACGTCGTATATATG 57.040 34.615 0.00 0.00 0.00 1.78
1977 2241 3.192001 AGCTGTGAGGAATTAACGTCGTA 59.808 43.478 0.00 0.00 0.00 3.43
1978 2242 2.029290 AGCTGTGAGGAATTAACGTCGT 60.029 45.455 0.00 0.00 0.00 4.34
1979 2243 2.607187 AGCTGTGAGGAATTAACGTCG 58.393 47.619 0.00 0.00 0.00 5.12
1981 2245 5.548406 ACTTAAGCTGTGAGGAATTAACGT 58.452 37.500 1.29 0.00 0.00 3.99
1982 2246 6.147164 TCAACTTAAGCTGTGAGGAATTAACG 59.853 38.462 1.29 0.00 0.00 3.18
1983 2247 7.435068 TCAACTTAAGCTGTGAGGAATTAAC 57.565 36.000 1.29 0.00 0.00 2.01
1987 2251 5.471456 CAGTTCAACTTAAGCTGTGAGGAAT 59.529 40.000 1.29 0.00 0.00 3.01
1988 2252 4.816385 CAGTTCAACTTAAGCTGTGAGGAA 59.184 41.667 1.29 0.00 0.00 3.36
1991 2255 3.058639 GGCAGTTCAACTTAAGCTGTGAG 60.059 47.826 1.29 0.00 0.00 3.51
1992 2256 2.878406 GGCAGTTCAACTTAAGCTGTGA 59.122 45.455 1.29 1.18 0.00 3.58
1993 2257 2.618241 TGGCAGTTCAACTTAAGCTGTG 59.382 45.455 1.29 0.00 0.00 3.66
1995 2259 3.988379 TTGGCAGTTCAACTTAAGCTG 57.012 42.857 1.29 0.08 0.00 4.24
1998 2262 6.564328 AGACTTTTTGGCAGTTCAACTTAAG 58.436 36.000 0.00 0.00 0.00 1.85
1999 2263 6.524101 AGACTTTTTGGCAGTTCAACTTAA 57.476 33.333 0.00 0.00 0.00 1.85
2000 2264 6.524101 AAGACTTTTTGGCAGTTCAACTTA 57.476 33.333 0.00 0.00 0.00 2.24
2001 2265 5.405935 AAGACTTTTTGGCAGTTCAACTT 57.594 34.783 0.00 0.00 0.00 2.66
2002 2266 6.096846 ACATAAGACTTTTTGGCAGTTCAACT 59.903 34.615 0.00 0.00 0.00 3.16
2003 2267 6.273071 ACATAAGACTTTTTGGCAGTTCAAC 58.727 36.000 0.00 0.00 0.00 3.18
2005 2269 6.463995 AACATAAGACTTTTTGGCAGTTCA 57.536 33.333 0.00 0.00 0.00 3.18
2006 2270 8.135529 ACTAAACATAAGACTTTTTGGCAGTTC 58.864 33.333 0.00 0.00 0.00 3.01
2009 2273 8.871686 AAACTAAACATAAGACTTTTTGGCAG 57.128 30.769 0.00 0.00 0.00 4.85
2024 2288 9.606631 TTTGGCAGTTCAATTTAAACTAAACAT 57.393 25.926 3.31 0.00 35.25 2.71
2025 2289 9.436957 TTTTGGCAGTTCAATTTAAACTAAACA 57.563 25.926 3.31 1.72 35.25 2.83
2028 2292 9.606631 ACATTTTGGCAGTTCAATTTAAACTAA 57.393 25.926 3.31 0.00 35.25 2.24
2029 2293 9.255304 GACATTTTGGCAGTTCAATTTAAACTA 57.745 29.630 3.31 0.00 35.25 2.24
2030 2294 7.986889 AGACATTTTGGCAGTTCAATTTAAACT 59.013 29.630 0.00 0.00 37.44 2.66
2031 2295 8.141835 AGACATTTTGGCAGTTCAATTTAAAC 57.858 30.769 0.00 0.00 0.00 2.01
2032 2296 8.729805 AAGACATTTTGGCAGTTCAATTTAAA 57.270 26.923 0.00 0.00 0.00 1.52
2033 2297 9.995003 ATAAGACATTTTGGCAGTTCAATTTAA 57.005 25.926 0.00 0.00 0.00 1.52
2063 2327 6.137415 CGTTTTGGCAGTTCGATTTAAACTA 58.863 36.000 0.00 0.00 35.25 2.24
2064 2328 4.973663 CGTTTTGGCAGTTCGATTTAAACT 59.026 37.500 0.00 0.00 37.44 2.66
2065 2329 4.736307 ACGTTTTGGCAGTTCGATTTAAAC 59.264 37.500 12.49 5.26 0.00 2.01
2068 2332 3.810941 AGACGTTTTGGCAGTTCGATTTA 59.189 39.130 12.49 0.00 0.00 1.40
2069 2333 2.616842 AGACGTTTTGGCAGTTCGATTT 59.383 40.909 12.49 0.00 0.00 2.17
2070 2334 2.218603 AGACGTTTTGGCAGTTCGATT 58.781 42.857 12.49 0.60 0.00 3.34
2071 2335 1.878953 AGACGTTTTGGCAGTTCGAT 58.121 45.000 12.49 1.09 0.00 3.59
2072 2336 1.658994 AAGACGTTTTGGCAGTTCGA 58.341 45.000 12.49 0.00 0.00 3.71
2073 2337 3.806316 ATAAGACGTTTTGGCAGTTCG 57.194 42.857 0.83 5.92 0.00 3.95
2075 2339 7.608761 TCCTAAATATAAGACGTTTTGGCAGTT 59.391 33.333 0.83 0.00 30.97 3.16
2077 2341 7.548196 TCCTAAATATAAGACGTTTTGGCAG 57.452 36.000 0.83 0.00 30.97 4.85
2078 2342 7.925043 TTCCTAAATATAAGACGTTTTGGCA 57.075 32.000 0.83 0.00 30.97 4.92
2084 2348 9.377238 ACCCTCTATTCCTAAATATAAGACGTT 57.623 33.333 0.00 0.00 0.00 3.99
2085 2349 8.804204 CACCCTCTATTCCTAAATATAAGACGT 58.196 37.037 0.00 0.00 0.00 4.34
2086 2350 8.804204 ACACCCTCTATTCCTAAATATAAGACG 58.196 37.037 0.00 0.00 0.00 4.18
2094 2358 9.684702 TTCCTTATACACCCTCTATTCCTAAAT 57.315 33.333 0.00 0.00 0.00 1.40
2095 2359 9.510062 TTTCCTTATACACCCTCTATTCCTAAA 57.490 33.333 0.00 0.00 0.00 1.85
2096 2360 9.155785 CTTTCCTTATACACCCTCTATTCCTAA 57.844 37.037 0.00 0.00 0.00 2.69
2097 2361 7.733501 CCTTTCCTTATACACCCTCTATTCCTA 59.266 40.741 0.00 0.00 0.00 2.94
2098 2362 6.559157 CCTTTCCTTATACACCCTCTATTCCT 59.441 42.308 0.00 0.00 0.00 3.36
2099 2363 6.557633 TCCTTTCCTTATACACCCTCTATTCC 59.442 42.308 0.00 0.00 0.00 3.01
2100 2364 7.613551 TCCTTTCCTTATACACCCTCTATTC 57.386 40.000 0.00 0.00 0.00 1.75
2101 2365 8.401955 TTTCCTTTCCTTATACACCCTCTATT 57.598 34.615 0.00 0.00 0.00 1.73
2102 2366 7.072581 CCTTTCCTTTCCTTATACACCCTCTAT 59.927 40.741 0.00 0.00 0.00 1.98
2103 2367 6.386050 CCTTTCCTTTCCTTATACACCCTCTA 59.614 42.308 0.00 0.00 0.00 2.43
2104 2368 5.191921 CCTTTCCTTTCCTTATACACCCTCT 59.808 44.000 0.00 0.00 0.00 3.69
2105 2369 5.437946 CCTTTCCTTTCCTTATACACCCTC 58.562 45.833 0.00 0.00 0.00 4.30
2106 2370 4.229812 CCCTTTCCTTTCCTTATACACCCT 59.770 45.833 0.00 0.00 0.00 4.34
2107 2371 4.228895 TCCCTTTCCTTTCCTTATACACCC 59.771 45.833 0.00 0.00 0.00 4.61
2108 2372 5.446260 TCCCTTTCCTTTCCTTATACACC 57.554 43.478 0.00 0.00 0.00 4.16
2111 2375 6.323210 TCCTTCCCTTTCCTTTCCTTATAC 57.677 41.667 0.00 0.00 0.00 1.47
2116 2380 4.552883 TTTTCCTTCCCTTTCCTTTCCT 57.447 40.909 0.00 0.00 0.00 3.36
2117 2381 4.838423 TCATTTTCCTTCCCTTTCCTTTCC 59.162 41.667 0.00 0.00 0.00 3.13
2118 2382 5.540337 ACTCATTTTCCTTCCCTTTCCTTTC 59.460 40.000 0.00 0.00 0.00 2.62
2152 2417 2.805099 GCATCTGACCATAGCTAACTGC 59.195 50.000 0.00 0.00 43.29 4.40
2153 2418 3.397482 GGCATCTGACCATAGCTAACTG 58.603 50.000 0.00 0.00 0.00 3.16
2155 2420 2.772287 GGGCATCTGACCATAGCTAAC 58.228 52.381 0.00 0.00 44.76 2.34
2164 2429 2.636893 AGTGATAGATGGGCATCTGACC 59.363 50.000 0.00 0.00 46.80 4.02
2174 2439 8.682936 AGTTTAAATTAGCCAGTGATAGATGG 57.317 34.615 0.00 0.00 39.73 3.51
2203 2477 1.732259 GAACATGGGTACTTCACTGCG 59.268 52.381 0.00 0.00 0.00 5.18
2239 2513 8.803799 CGCCCTAAACACAAATTGTAAATTATC 58.196 33.333 0.00 0.00 37.51 1.75
2248 2522 2.288152 ACAGCGCCCTAAACACAAATTG 60.288 45.455 2.29 0.00 0.00 2.32
2250 2524 1.269448 CACAGCGCCCTAAACACAAAT 59.731 47.619 2.29 0.00 0.00 2.32
2265 2539 3.681593 TCAACTTATTGTACCCCACAGC 58.318 45.455 0.00 0.00 38.72 4.40
2270 2544 7.639113 TGATCATTTCAACTTATTGTACCCC 57.361 36.000 0.00 0.00 37.11 4.95
2291 2583 4.460382 CACAGCCCTCTAACACAAATTGAT 59.540 41.667 0.00 0.00 0.00 2.57
2293 2585 3.057315 CCACAGCCCTCTAACACAAATTG 60.057 47.826 0.00 0.00 0.00 2.32
2295 2587 2.108250 ACCACAGCCCTCTAACACAAAT 59.892 45.455 0.00 0.00 0.00 2.32
2297 2589 1.136828 ACCACAGCCCTCTAACACAA 58.863 50.000 0.00 0.00 0.00 3.33
2298 2590 0.396435 CACCACAGCCCTCTAACACA 59.604 55.000 0.00 0.00 0.00 3.72
2305 2597 2.980233 GTGCACACCACAGCCCTC 60.980 66.667 13.17 0.00 44.06 4.30
2367 2659 1.662629 CACTCTGCCACGCTCTAAATG 59.337 52.381 0.00 0.00 0.00 2.32
2381 2673 5.705441 TCAAACTTAATGTAAGGGCACTCTG 59.295 40.000 0.00 0.00 40.08 3.35
2427 2735 8.395633 GCGTTGACATAAATTTACTACATCCTT 58.604 33.333 0.00 0.00 0.00 3.36
2429 2737 7.130269 GGCGTTGACATAAATTTACTACATCC 58.870 38.462 0.00 0.00 0.00 3.51
2431 2739 6.314400 ACGGCGTTGACATAAATTTACTACAT 59.686 34.615 6.77 0.00 0.00 2.29
2432 2740 5.638657 ACGGCGTTGACATAAATTTACTACA 59.361 36.000 6.77 0.00 0.00 2.74
2433 2741 6.098367 ACGGCGTTGACATAAATTTACTAC 57.902 37.500 6.77 0.00 0.00 2.73
2434 2742 7.492020 ACATACGGCGTTGACATAAATTTACTA 59.508 33.333 21.24 0.00 0.00 1.82
2443 2751 7.146648 TGATTTATACATACGGCGTTGACATA 58.853 34.615 21.24 14.80 0.00 2.29
2448 2756 5.460748 TCACTGATTTATACATACGGCGTTG 59.539 40.000 21.24 18.32 0.00 4.10
2518 2826 7.176515 TCCAACATACATAAATGCTTGTCACTT 59.823 33.333 0.00 0.00 0.00 3.16
2692 3015 1.004560 TTCCTTCGCTGCAGAGGTG 60.005 57.895 20.43 10.58 0.00 4.00
2703 3032 1.669795 GGCCAACAATTGCTTCCTTCG 60.670 52.381 5.05 0.00 0.00 3.79
2784 3152 5.585820 TGCATGACAAGCATATCACAATT 57.414 34.783 0.24 0.00 37.02 2.32
2895 3266 3.135348 TCATGCAATCTAGCTGCTAGGTT 59.865 43.478 30.48 28.07 37.83 3.50
3161 3533 0.402121 AGAAGACAAACCCTGGAGGC 59.598 55.000 0.00 0.00 40.58 4.70
3183 3578 8.673711 TGATATGCAATGTAGGTCTGTTAAAAC 58.326 33.333 0.00 0.00 0.00 2.43
3202 3619 9.338622 ACCAGTTAAAGGTTAAGTATGATATGC 57.661 33.333 0.00 0.00 35.33 3.14
3259 3683 5.049474 TGTTCATAGCAGCTTTAATATGCCG 60.049 40.000 0.00 0.00 40.89 5.69
3261 3685 7.587629 TGATGTTCATAGCAGCTTTAATATGC 58.412 34.615 0.00 0.00 40.29 3.14
3276 3702 5.434182 TGTCCACCATCTTGATGTTCATA 57.566 39.130 9.41 0.00 0.00 2.15
3344 3770 0.179089 CTGCCTTCTCCACCTCATCG 60.179 60.000 0.00 0.00 0.00 3.84
3515 3941 2.422597 CTCCGTGCAGTTTCCATTGTA 58.577 47.619 0.00 0.00 0.00 2.41
3625 4051 7.721402 TGAACCTGCACAAACAAATATAGTTT 58.279 30.769 1.50 1.50 39.61 2.66
3893 4341 8.260114 TCTGTAATGTGAGAGATTAAGCATGAA 58.740 33.333 0.00 0.00 0.00 2.57
4133 4595 1.068895 CATGTTTTCAGGCCTGTTGCA 59.931 47.619 31.58 23.90 43.89 4.08
4185 4647 1.985895 AGTTCCCCAAAGACCTCGAAT 59.014 47.619 0.00 0.00 0.00 3.34
4260 4722 0.538977 GGCCCAGGACCATGATGATG 60.539 60.000 0.00 0.00 0.00 3.07
4261 4723 0.995132 TGGCCCAGGACCATGATGAT 60.995 55.000 0.00 0.00 30.29 2.45
4262 4724 1.213619 TTGGCCCAGGACCATGATGA 61.214 55.000 0.00 0.00 36.96 2.92
4263 4725 0.324552 TTTGGCCCAGGACCATGATG 60.325 55.000 0.00 0.00 36.96 3.07
4264 4726 0.324645 GTTTGGCCCAGGACCATGAT 60.325 55.000 0.00 0.00 36.96 2.45
4265 4727 1.076549 GTTTGGCCCAGGACCATGA 59.923 57.895 0.00 0.00 36.96 3.07
4266 4728 0.331278 TAGTTTGGCCCAGGACCATG 59.669 55.000 0.00 0.00 36.96 3.66
4267 4729 0.331616 GTAGTTTGGCCCAGGACCAT 59.668 55.000 0.00 0.00 36.96 3.55
4268 4730 0.770557 AGTAGTTTGGCCCAGGACCA 60.771 55.000 0.00 0.00 34.65 4.02
4269 4731 0.035343 GAGTAGTTTGGCCCAGGACC 60.035 60.000 0.00 0.00 0.00 4.46
4270 4732 0.690762 TGAGTAGTTTGGCCCAGGAC 59.309 55.000 0.00 0.00 0.00 3.85
4271 4733 0.984230 CTGAGTAGTTTGGCCCAGGA 59.016 55.000 0.00 0.00 0.00 3.86
4272 4734 0.984230 TCTGAGTAGTTTGGCCCAGG 59.016 55.000 0.00 0.00 0.00 4.45
4286 4748 9.922305 CTGTTTAGTTCTTGTAAAACTTCTGAG 57.078 33.333 0.00 0.00 38.00 3.35
4318 4780 2.103042 GTCACTCGATGTGCTGGGC 61.103 63.158 9.34 0.00 45.81 5.36
4334 4796 6.790285 TTAGGTGGATTTTGTTTAGTCGTC 57.210 37.500 0.00 0.00 0.00 4.20
4336 4798 8.943002 AGTAATTAGGTGGATTTTGTTTAGTCG 58.057 33.333 0.00 0.00 0.00 4.18
4340 4802 7.337436 CCGGAGTAATTAGGTGGATTTTGTTTA 59.663 37.037 0.00 0.00 0.00 2.01
4342 4804 5.650703 CCGGAGTAATTAGGTGGATTTTGTT 59.349 40.000 0.00 0.00 0.00 2.83
4354 4816 2.093128 ACAAGGTGGCCGGAGTAATTAG 60.093 50.000 5.05 0.00 0.00 1.73
4365 4827 1.743394 GTATGCTTGTACAAGGTGGCC 59.257 52.381 31.42 17.67 38.80 5.36
4380 4842 2.336554 CACAAGTGCTGTTGGTATGC 57.663 50.000 4.03 0.00 35.47 3.14
4395 4857 3.123523 CTGCTGGCACAACGCACAA 62.124 57.895 0.00 0.00 45.17 3.33
4396 4858 3.585020 CTGCTGGCACAACGCACA 61.585 61.111 0.00 0.00 45.17 4.57
4397 4859 3.245948 CTCTGCTGGCACAACGCAC 62.246 63.158 0.00 0.00 45.17 5.34
4398 4860 2.974148 CTCTGCTGGCACAACGCA 60.974 61.111 0.00 0.00 45.17 5.24
4399 4861 4.395583 GCTCTGCTGGCACAACGC 62.396 66.667 0.00 0.00 38.70 4.84
4400 4862 1.357258 CTAGCTCTGCTGGCACAACG 61.357 60.000 1.96 0.00 40.10 4.10
4401 4863 0.036952 TCTAGCTCTGCTGGCACAAC 60.037 55.000 1.96 0.00 40.10 3.32
4420 4882 2.040813 TCAACACCTAGGTCTACCGTCT 59.959 50.000 12.84 0.00 42.08 4.18
4440 4902 5.009610 TGAGCCTGTTGTGTAATTTTCCTTC 59.990 40.000 0.00 0.00 0.00 3.46
4444 4906 5.181690 TGTGAGCCTGTTGTGTAATTTTC 57.818 39.130 0.00 0.00 0.00 2.29
4459 4921 7.093322 ACTGATTTATCTTTGATTGTGAGCC 57.907 36.000 0.00 0.00 0.00 4.70
4480 4942 9.482627 GGGAGTATTAATCAAGAGAACATACTG 57.517 37.037 0.00 0.00 30.50 2.74
4485 4947 6.183360 CGGAGGGAGTATTAATCAAGAGAACA 60.183 42.308 0.00 0.00 0.00 3.18
4490 4952 4.587684 GGACGGAGGGAGTATTAATCAAGA 59.412 45.833 0.00 0.00 0.00 3.02
4500 4962 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4501 4963 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4502 4964 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4503 4965 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4504 4966 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4505 4967 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4506 4968 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4507 4969 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4508 4970 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4509 4971 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4510 4972 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
4511 4973 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
4512 4974 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
4576 5038 9.643693 GTCATCAAAATGGATAAAAAGTGATGT 57.356 29.630 9.42 0.00 41.09 3.06
4577 5039 9.642327 TGTCATCAAAATGGATAAAAAGTGATG 57.358 29.630 0.00 0.00 41.46 3.07
4579 5041 9.695526 CTTGTCATCAAAATGGATAAAAAGTGA 57.304 29.630 0.00 0.00 33.42 3.41
4580 5042 9.480053 ACTTGTCATCAAAATGGATAAAAAGTG 57.520 29.630 0.00 0.00 33.42 3.16
4588 5050 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4589 5051 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4590 5052 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4591 5053 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4592 5054 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4593 5055 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4594 5056 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4595 5057 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4596 5058 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4597 5059 3.308866 CCCGTCCGAAAATACTTGTCATC 59.691 47.826 0.00 0.00 0.00 2.92
4598 5060 3.267483 CCCGTCCGAAAATACTTGTCAT 58.733 45.455 0.00 0.00 0.00 3.06
4599 5061 2.613474 CCCCGTCCGAAAATACTTGTCA 60.613 50.000 0.00 0.00 0.00 3.58
4600 5062 2.004733 CCCCGTCCGAAAATACTTGTC 58.995 52.381 0.00 0.00 0.00 3.18
4601 5063 1.339342 CCCCCGTCCGAAAATACTTGT 60.339 52.381 0.00 0.00 0.00 3.16
4602 5064 1.375551 CCCCCGTCCGAAAATACTTG 58.624 55.000 0.00 0.00 0.00 3.16
4603 5065 3.867549 CCCCCGTCCGAAAATACTT 57.132 52.632 0.00 0.00 0.00 2.24
4618 5080 5.941788 AGATCAAACACATATACTTCCCCC 58.058 41.667 0.00 0.00 0.00 5.40
4619 5081 7.506114 TGTAGATCAAACACATATACTTCCCC 58.494 38.462 0.00 0.00 0.00 4.81
4620 5082 9.561069 AATGTAGATCAAACACATATACTTCCC 57.439 33.333 3.30 0.00 32.70 3.97
4642 5104 9.790389 TTTTTCGTTTGTTGAGTGTAATAATGT 57.210 25.926 0.00 0.00 0.00 2.71
4652 5114 3.112580 CGCCATTTTTCGTTTGTTGAGT 58.887 40.909 0.00 0.00 0.00 3.41
4654 5116 1.855360 GCGCCATTTTTCGTTTGTTGA 59.145 42.857 0.00 0.00 0.00 3.18
4655 5117 1.590238 TGCGCCATTTTTCGTTTGTTG 59.410 42.857 4.18 0.00 0.00 3.33
4656 5118 1.927895 TGCGCCATTTTTCGTTTGTT 58.072 40.000 4.18 0.00 0.00 2.83
4658 5120 4.838665 ATTATGCGCCATTTTTCGTTTG 57.161 36.364 4.18 0.00 0.00 2.93
4660 5122 5.403246 TGTTATTATGCGCCATTTTTCGTT 58.597 33.333 4.18 0.00 0.00 3.85
4661 5123 4.987832 TGTTATTATGCGCCATTTTTCGT 58.012 34.783 4.18 0.00 0.00 3.85
4662 5124 5.940603 TTGTTATTATGCGCCATTTTTCG 57.059 34.783 4.18 0.00 0.00 3.46
4685 5147 6.315891 TGCTCGAAACATTGATATGAACATCA 59.684 34.615 0.00 0.00 35.65 3.07
4686 5148 6.718388 TGCTCGAAACATTGATATGAACATC 58.282 36.000 0.00 0.00 35.65 3.06
4690 5152 4.635324 TGCTGCTCGAAACATTGATATGAA 59.365 37.500 0.00 0.00 35.65 2.57
4743 5205 5.483685 AACCTTGTAATGTGCTAGTCTCA 57.516 39.130 0.00 0.00 0.00 3.27
4794 5256 7.653311 GGAACAGCAAAGAGAAAATATGTGTTT 59.347 33.333 0.00 0.00 0.00 2.83
4816 5278 4.292784 GCTGACAGAGCTGGGAAC 57.707 61.111 6.65 0.00 45.21 3.62
4824 5286 3.833545 AGTACGTAGTTGCTGACAGAG 57.166 47.619 6.65 0.00 37.78 3.35
4825 5287 4.067192 TGTAGTACGTAGTTGCTGACAGA 58.933 43.478 8.48 0.00 37.78 3.41
4956 5423 1.473434 CGATCTTGACCAAGTAGCCCC 60.473 57.143 9.31 0.00 39.38 5.80
4957 5424 1.941325 CGATCTTGACCAAGTAGCCC 58.059 55.000 9.31 0.00 39.38 5.19
5038 5508 2.043526 AGAAGGAAGGGCATTGAATGGT 59.956 45.455 7.35 0.00 0.00 3.55
5060 5530 5.616270 TGTAACAGGTTATCAAGCTTGTGA 58.384 37.500 25.19 8.56 37.06 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.