Multiple sequence alignment - TraesCS1A01G304400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G304400 chr1A 100.000 6693 0 0 1 6693 497516521 497523213 0.000000e+00 12360.0
1 TraesCS1A01G304400 chr1A 82.396 676 86 23 14 674 497281401 497282058 5.860000e-155 558.0
2 TraesCS1A01G304400 chr1A 95.604 91 4 0 6602 6692 536295530 536295620 5.410000e-31 147.0
3 TraesCS1A01G304400 chr1A 96.250 80 3 0 6605 6684 549492918 549492997 1.510000e-26 132.0
4 TraesCS1A01G304400 chr1A 92.135 89 7 0 6602 6690 376991739 376991651 7.050000e-25 126.0
5 TraesCS1A01G304400 chr1A 92.593 54 2 2 5035 5086 334060107 334060160 7.200000e-10 76.8
6 TraesCS1A01G304400 chr1A 100.000 31 0 0 5345 5375 332047177 332047207 2.610000e-04 58.4
7 TraesCS1A01G304400 chr1A 100.000 30 0 0 5345 5374 229421442 229421471 1.000000e-03 56.5
8 TraesCS1A01G304400 chr1D 96.307 2735 75 14 2316 5037 401681627 401684348 0.000000e+00 4468.0
9 TraesCS1A01G304400 chr1D 95.145 2348 82 8 1 2319 401679238 401681582 0.000000e+00 3675.0
10 TraesCS1A01G304400 chr1D 93.106 1291 59 10 5320 6586 401684558 401685842 0.000000e+00 1864.0
11 TraesCS1A01G304400 chr1D 82.074 675 89 22 14 674 401197393 401198049 1.270000e-151 547.0
12 TraesCS1A01G304400 chr1D 96.078 153 4 2 5180 5331 87709026 87708875 1.440000e-61 248.0
13 TraesCS1A01G304400 chr1D 92.199 141 8 3 5035 5172 401684396 401684536 5.300000e-46 196.0
14 TraesCS1A01G304400 chr1B 96.012 2733 82 18 2316 5037 539567466 539570182 0.000000e+00 4418.0
15 TraesCS1A01G304400 chr1B 95.163 2233 69 12 114 2319 539565201 539567421 0.000000e+00 3489.0
16 TraesCS1A01G304400 chr1B 94.307 1054 48 7 5320 6372 539570392 539571434 0.000000e+00 1604.0
17 TraesCS1A01G304400 chr1B 81.926 675 89 22 14 674 539447579 539448234 2.120000e-149 540.0
18 TraesCS1A01G304400 chr1B 94.667 300 16 0 1 300 539564905 539565204 3.660000e-127 466.0
19 TraesCS1A01G304400 chr1B 89.781 137 12 2 5035 5169 539570230 539570366 2.480000e-39 174.0
20 TraesCS1A01G304400 chr1B 86.667 75 5 2 6463 6532 539571472 539571546 2.000000e-10 78.7
21 TraesCS1A01G304400 chrUn 98.601 143 2 0 5180 5322 70285988 70285846 3.100000e-63 254.0
22 TraesCS1A01G304400 chrUn 98.601 143 2 0 5180 5322 119818166 119818308 3.100000e-63 254.0
23 TraesCS1A01G304400 chrUn 92.593 54 2 2 5035 5086 399312944 399312891 7.200000e-10 76.8
24 TraesCS1A01G304400 chr7A 97.945 146 3 0 5180 5325 735447438 735447293 3.100000e-63 254.0
25 TraesCS1A01G304400 chr7A 84.906 106 13 3 4775 4878 681608061 681608165 3.300000e-18 104.0
26 TraesCS1A01G304400 chr7A 94.595 37 0 1 5345 5381 239110404 239110370 1.000000e-03 56.5
27 TraesCS1A01G304400 chr6D 98.601 143 2 0 5180 5322 153190925 153190783 3.100000e-63 254.0
28 TraesCS1A01G304400 chr6D 89.535 86 8 1 4802 4887 348087860 348087776 2.550000e-19 108.0
29 TraesCS1A01G304400 chr6D 100.000 30 0 0 5345 5374 38537816 38537787 1.000000e-03 56.5
30 TraesCS1A01G304400 chr6D 94.444 36 2 0 6480 6515 468826420 468826385 1.000000e-03 56.5
31 TraesCS1A01G304400 chr6A 98.601 143 2 0 5180 5322 440860412 440860554 3.100000e-63 254.0
32 TraesCS1A01G304400 chr6A 91.860 86 7 0 6605 6690 101912753 101912838 3.280000e-23 121.0
33 TraesCS1A01G304400 chr6A 86.813 91 11 1 4797 4887 614497193 614497282 4.270000e-17 100.0
34 TraesCS1A01G304400 chr5A 97.945 146 3 0 5180 5325 410512178 410512033 3.100000e-63 254.0
35 TraesCS1A01G304400 chr3A 97.945 146 3 0 5180 5325 504618711 504618566 3.100000e-63 254.0
36 TraesCS1A01G304400 chr3A 94.375 160 7 2 5186 5345 698350761 698350604 1.860000e-60 244.0
37 TraesCS1A01G304400 chr3A 86.957 92 10 2 4797 4887 741396067 741395977 1.190000e-17 102.0
38 TraesCS1A01G304400 chr2A 96.591 88 3 0 6605 6692 677394657 677394744 5.410000e-31 147.0
39 TraesCS1A01G304400 chr2A 91.954 87 7 0 6604 6690 38365570 38365656 9.110000e-24 122.0
40 TraesCS1A01G304400 chr2A 91.026 78 7 0 4801 4878 585818885 585818962 9.180000e-19 106.0
41 TraesCS1A01G304400 chr2A 100.000 31 0 0 5345 5375 22582865 22582895 2.610000e-04 58.4
42 TraesCS1A01G304400 chr7D 95.000 80 4 0 6605 6684 223858488 223858567 7.050000e-25 126.0
43 TraesCS1A01G304400 chr4D 95.000 80 4 0 6605 6684 234722731 234722652 7.050000e-25 126.0
44 TraesCS1A01G304400 chr2D 91.954 87 7 0 6604 6690 87268311 87268225 9.110000e-24 122.0
45 TraesCS1A01G304400 chr2D 79.348 92 18 1 6484 6574 142471799 142471708 5.600000e-06 63.9
46 TraesCS1A01G304400 chr3B 85.859 99 11 3 4789 4887 545205379 545205284 1.190000e-17 102.0
47 TraesCS1A01G304400 chr6B 86.813 91 11 1 4797 4887 663114490 663114401 4.270000e-17 100.0
48 TraesCS1A01G304400 chr6B 92.593 54 3 1 6484 6536 5843545 5843492 7.200000e-10 76.8
49 TraesCS1A01G304400 chr7B 90.741 54 3 2 5035 5086 378053546 378053493 3.350000e-08 71.3
50 TraesCS1A01G304400 chr7B 100.000 31 0 0 5345 5375 394336832 394336862 2.610000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G304400 chr1A 497516521 497523213 6692 False 12360.00 12360 100.000000 1 6693 1 chr1A.!!$F5 6692
1 TraesCS1A01G304400 chr1A 497281401 497282058 657 False 558.00 558 82.396000 14 674 1 chr1A.!!$F4 660
2 TraesCS1A01G304400 chr1D 401679238 401685842 6604 False 2550.75 4468 94.189250 1 6586 4 chr1D.!!$F2 6585
3 TraesCS1A01G304400 chr1D 401197393 401198049 656 False 547.00 547 82.074000 14 674 1 chr1D.!!$F1 660
4 TraesCS1A01G304400 chr1B 539564905 539571546 6641 False 1704.95 4418 92.766167 1 6532 6 chr1B.!!$F2 6531
5 TraesCS1A01G304400 chr1B 539447579 539448234 655 False 540.00 540 81.926000 14 674 1 chr1B.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 355 1.067565 GCAGGACTTCGTCACTGATCA 60.068 52.381 13.16 0.00 34.88 2.92 F
174 359 1.263776 GACTTCGTCACTGATCAGCG 58.736 55.000 22.83 17.42 32.09 5.18 F
1213 1444 1.301293 CTCCCTGCCAAGTTCCTCC 59.699 63.158 0.00 0.00 0.00 4.30 F
2305 2537 0.044244 TAGCTTCTAGGCTGGGGGTT 59.956 55.000 0.00 0.00 43.01 4.11 F
2524 2806 0.834612 TTGACACGGGGAACTGAGTT 59.165 50.000 0.00 0.00 40.85 3.01 F
3917 4211 1.308998 GGGTTGAACACACCACTCTG 58.691 55.000 0.00 0.00 0.00 3.35 F
5209 5559 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1507 4.639334 ACATAGCTAGCCATTGTCATCAG 58.361 43.478 12.13 0.0 0.00 2.90 R
2101 2332 4.778213 ACCATGTACCTTGATGCATACT 57.222 40.909 0.00 0.0 0.00 2.12 R
2685 2974 0.109723 TAGGTCAGTTTGCCCCACAC 59.890 55.000 0.00 0.0 0.00 3.82 R
3881 4175 0.748450 CCCCAAATATGTGCTGGCTG 59.252 55.000 0.00 0.0 0.00 4.85 R
4082 4377 1.376543 ATTGCTGGATGAGTTGCTCG 58.623 50.000 0.00 0.0 32.35 5.03 R
5221 5571 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.0 38.20 3.49 R
6613 6991 0.172352 CAAGTGTGGTGGTTTTGCGT 59.828 50.000 0.00 0.0 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 1.355210 CGTCCAAACCAGCACACAC 59.645 57.895 0.00 0.00 0.00 3.82
141 142 2.071688 CGACTTGCTCTGCTAGTTGT 57.928 50.000 7.90 0.00 43.67 3.32
171 355 1.067565 GCAGGACTTCGTCACTGATCA 60.068 52.381 13.16 0.00 34.88 2.92
174 359 1.263776 GACTTCGTCACTGATCAGCG 58.736 55.000 22.83 17.42 32.09 5.18
199 384 1.399744 ATTAGCCCGTGCCTCATCGA 61.400 55.000 0.00 0.00 38.69 3.59
211 396 2.029828 GCCTCATCGATGATTAGTCGGT 60.030 50.000 27.43 0.00 39.45 4.69
888 1118 9.109246 AGGACCCCCTATATTTATTACTTACAC 57.891 37.037 0.00 0.00 42.15 2.90
1065 1295 8.671384 TTAATATGGTTACTCATTTTCTCCCG 57.329 34.615 0.00 0.00 0.00 5.14
1120 1351 5.127519 TCATTTTGGCTTCCACTTCCATATG 59.872 40.000 0.00 0.00 30.78 1.78
1213 1444 1.301293 CTCCCTGCCAAGTTCCTCC 59.699 63.158 0.00 0.00 0.00 4.30
1276 1507 4.213482 GGTTCATTGTCCACTTCTGTGTAC 59.787 45.833 0.00 0.00 42.34 2.90
1296 1527 4.970860 ACTGATGACAATGGCTAGCTAT 57.029 40.909 15.72 11.85 0.00 2.97
1496 1727 9.959721 TTCCAAAGTATCTCATAAAGCTAACTT 57.040 29.630 0.00 0.00 37.90 2.66
2101 2332 3.026707 TCCCATCCAATCGACTGAGTA 57.973 47.619 0.00 0.00 0.00 2.59
2175 2406 0.306533 TTCGTGCTTCTTTGGCGAAC 59.693 50.000 0.00 0.00 36.78 3.95
2242 2474 4.202223 GGTGTGTGTTTCTCTCTTCCTGTA 60.202 45.833 0.00 0.00 0.00 2.74
2267 2499 5.655488 CTGAGGTTTCAGTAGATTCATCGT 58.345 41.667 0.00 0.00 44.74 3.73
2287 2519 1.078497 CCCTGCGCTTGTGTGGATA 60.078 57.895 9.73 0.00 0.00 2.59
2303 2535 0.980423 GATAGCTTCTAGGCTGGGGG 59.020 60.000 0.00 0.00 43.01 5.40
2305 2537 0.044244 TAGCTTCTAGGCTGGGGGTT 59.956 55.000 0.00 0.00 43.01 4.11
2306 2538 1.077429 GCTTCTAGGCTGGGGGTTG 60.077 63.158 0.00 0.00 0.00 3.77
2310 2542 2.047769 TCTAGGCTGGGGGTTGTTTA 57.952 50.000 0.00 0.00 0.00 2.01
2311 2543 1.913419 TCTAGGCTGGGGGTTGTTTAG 59.087 52.381 0.00 0.00 0.00 1.85
2313 2545 0.857675 AGGCTGGGGGTTGTTTAGTT 59.142 50.000 0.00 0.00 0.00 2.24
2314 2546 0.966179 GGCTGGGGGTTGTTTAGTTG 59.034 55.000 0.00 0.00 0.00 3.16
2327 2606 7.033185 GGTTGTTTAGTTGTGTCAGATGTTTT 58.967 34.615 0.00 0.00 0.00 2.43
2368 2650 9.199982 CTTGAATTGTTTGCTTTCTATCAATGT 57.800 29.630 0.00 0.00 0.00 2.71
2382 2664 2.300433 TCAATGTGTTGAGCTGCAAGT 58.700 42.857 1.02 0.00 39.36 3.16
2474 2756 8.475639 GGTAACTCTCTGAAGTGTTATGGATTA 58.524 37.037 4.11 0.00 41.18 1.75
2523 2805 1.056660 ATTGACACGGGGAACTGAGT 58.943 50.000 0.00 0.00 43.65 3.41
2524 2806 0.834612 TTGACACGGGGAACTGAGTT 59.165 50.000 0.00 0.00 40.85 3.01
2555 2837 6.071447 ACCTATTGCATTCATAAAACAGTGCA 60.071 34.615 0.00 0.00 40.42 4.57
2556 2838 6.254157 CCTATTGCATTCATAAAACAGTGCAC 59.746 38.462 9.40 9.40 41.67 4.57
2558 2840 2.916716 GCATTCATAAAACAGTGCACCG 59.083 45.455 14.63 5.70 33.09 4.94
2599 2882 5.904984 TGGTTGCCCACACTAGATTATAT 57.095 39.130 0.00 0.00 35.17 0.86
2605 2888 9.938280 GTTGCCCACACTAGATTATATGTATAA 57.062 33.333 0.00 0.00 33.16 0.98
2656 2945 7.459234 ACAACTACTGGGTTTATTAAGAGCTT 58.541 34.615 0.00 0.00 0.00 3.74
2685 2974 1.952621 TCTCTCTTGGTGTAAGGGGG 58.047 55.000 0.00 0.00 38.85 5.40
2798 3089 5.749462 ACATTCTTGGGAGTTCTTATCCAG 58.251 41.667 0.00 0.00 38.70 3.86
2860 3151 7.920682 GCAGGAAACAATTCTTTTAGTTCTTCA 59.079 33.333 0.00 0.00 35.79 3.02
2875 3166 5.999044 AGTTCTTCAGGAATGCTACATGAT 58.001 37.500 0.00 0.00 36.24 2.45
3069 3360 2.045561 TTGAAGGGTCACTGCGAAAA 57.954 45.000 0.00 0.00 31.90 2.29
3192 3483 4.383010 CCATTGGTAGTCTCACTATGCACA 60.383 45.833 0.00 0.00 32.65 4.57
3273 3564 6.236558 AGCCTTTTCCCTTGTAGTAGTATC 57.763 41.667 0.00 0.00 0.00 2.24
3323 3617 8.955061 AAAAGATAATGTTTCATGTCTTGTCG 57.045 30.769 0.00 0.00 0.00 4.35
3324 3618 6.668541 AGATAATGTTTCATGTCTTGTCGG 57.331 37.500 0.00 0.00 0.00 4.79
3347 3641 6.091441 CGGTTCCTTCACTATTTTCTTCTCTG 59.909 42.308 0.00 0.00 0.00 3.35
3389 3683 8.020244 GGTTCAATCTTCTTCTCAATTCTTCAC 58.980 37.037 0.00 0.00 0.00 3.18
3399 3693 5.569355 TCTCAATTCTTCACCTGGCATAAA 58.431 37.500 0.00 0.00 0.00 1.40
3493 3787 6.565811 GCAATGTGTTCTATCGAAGTTGTTCA 60.566 38.462 0.00 0.00 32.36 3.18
3739 4033 1.918262 TCATTTCATCCCAGGTCAGCT 59.082 47.619 0.00 0.00 0.00 4.24
3822 4116 4.713792 AATTTGGGAGGTAGCTATCCAG 57.286 45.455 14.07 0.00 37.33 3.86
3917 4211 1.308998 GGGTTGAACACACCACTCTG 58.691 55.000 0.00 0.00 0.00 3.35
4082 4377 4.357996 CGTCTTCTAATTCGGGGTCTTAC 58.642 47.826 0.00 0.00 0.00 2.34
4361 4656 1.909700 TTGGCTCTCCATGGTCAAAC 58.090 50.000 12.58 1.63 43.05 2.93
4482 4777 1.280421 AGCCTCTTGAACCCTGACATC 59.720 52.381 0.00 0.00 0.00 3.06
4601 4897 5.609533 ACTGTGTGTCTGGTTTTACTAGT 57.390 39.130 0.00 0.00 0.00 2.57
4715 5011 4.019860 ACAGTTGTTGGTATCTCAGCAGAT 60.020 41.667 0.00 0.00 42.48 2.90
4762 5058 0.673333 TGCTGTTCACACGCCCTATG 60.673 55.000 0.00 0.00 0.00 2.23
4854 5150 2.494059 GCTTTGACTGAAGCCACACTA 58.506 47.619 0.00 0.00 44.85 2.74
4857 5153 4.093556 GCTTTGACTGAAGCCACACTATAC 59.906 45.833 0.00 0.00 44.85 1.47
4911 5207 5.740290 TTATAGGGTAGCCAGCTATTGAC 57.260 43.478 14.62 0.00 0.00 3.18
4915 5211 1.269831 GGTAGCCAGCTATTGACGGAG 60.270 57.143 2.12 0.00 0.00 4.63
5082 5431 7.811236 TCTCACACTATACCAGTTCTTTTTACG 59.189 37.037 0.00 0.00 34.26 3.18
5101 5450 9.531942 TTTTTACGTTGTCTAATCTTGACACTA 57.468 29.630 0.00 0.00 43.13 2.74
5156 5506 9.726438 AGCAATATTATTGGTCTACTTATCACC 57.274 33.333 13.90 0.00 0.00 4.02
5163 5513 7.923414 ATTGGTCTACTTATCACCTTTTGAC 57.077 36.000 0.00 0.00 36.92 3.18
5165 5515 5.546499 TGGTCTACTTATCACCTTTTGACCT 59.454 40.000 0.00 0.00 41.20 3.85
5168 5518 8.098912 GGTCTACTTATCACCTTTTGACCTTTA 58.901 37.037 0.00 0.00 36.92 1.85
5169 5519 9.668497 GTCTACTTATCACCTTTTGACCTTTAT 57.332 33.333 0.00 0.00 36.92 1.40
5172 5522 8.122472 ACTTATCACCTTTTGACCTTTATTGG 57.878 34.615 0.00 0.00 36.92 3.16
5173 5523 7.728532 ACTTATCACCTTTTGACCTTTATTGGT 59.271 33.333 0.00 0.00 44.10 3.67
5194 5544 7.432148 TGGTCTATTTATCACCAAAGAGCTA 57.568 36.000 0.00 0.00 37.25 3.32
5195 5545 7.500992 TGGTCTATTTATCACCAAAGAGCTAG 58.499 38.462 0.00 0.00 37.25 3.42
5196 5546 6.425417 GGTCTATTTATCACCAAAGAGCTAGC 59.575 42.308 6.62 6.62 28.95 3.42
5197 5547 7.213678 GTCTATTTATCACCAAAGAGCTAGCT 58.786 38.462 19.45 19.45 28.95 3.32
5198 5548 8.361139 GTCTATTTATCACCAAAGAGCTAGCTA 58.639 37.037 19.38 0.00 28.95 3.32
5199 5549 9.094578 TCTATTTATCACCAAAGAGCTAGCTAT 57.905 33.333 19.38 12.73 28.95 2.97
5200 5550 7.976135 ATTTATCACCAAAGAGCTAGCTATG 57.024 36.000 19.38 16.41 0.00 2.23
5201 5551 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
5202 5552 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
5203 5553 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
5204 5554 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
5205 5555 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
5206 5556 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
5207 5557 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
5208 5558 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
5209 5559 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
5210 5560 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
5211 5561 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
5212 5562 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
5213 5563 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
5214 5564 1.144057 CTATGGACAGGGGTGCGTC 59.856 63.158 0.00 0.00 38.35 5.19
5215 5565 2.629050 CTATGGACAGGGGTGCGTCG 62.629 65.000 0.00 0.00 38.35 5.12
5217 5567 3.998672 GGACAGGGGTGCGTCGAA 61.999 66.667 0.00 0.00 32.74 3.71
5218 5568 2.432628 GACAGGGGTGCGTCGAAG 60.433 66.667 0.00 0.00 0.00 3.79
5219 5569 4.681978 ACAGGGGTGCGTCGAAGC 62.682 66.667 16.84 16.84 37.71 3.86
5220 5570 4.379243 CAGGGGTGCGTCGAAGCT 62.379 66.667 23.50 0.23 38.13 3.74
5221 5571 3.626924 AGGGGTGCGTCGAAGCTT 61.627 61.111 23.50 0.00 38.13 3.74
5222 5572 3.423154 GGGGTGCGTCGAAGCTTG 61.423 66.667 23.50 0.00 38.13 4.01
5223 5573 4.090057 GGGTGCGTCGAAGCTTGC 62.090 66.667 23.50 13.34 38.13 4.01
5224 5574 3.044305 GGTGCGTCGAAGCTTGCT 61.044 61.111 23.50 0.00 38.13 3.91
5225 5575 1.736645 GGTGCGTCGAAGCTTGCTA 60.737 57.895 23.50 0.23 38.13 3.49
5226 5576 1.084370 GGTGCGTCGAAGCTTGCTAT 61.084 55.000 23.50 0.00 38.13 2.97
5227 5577 0.299003 GTGCGTCGAAGCTTGCTATC 59.701 55.000 23.50 3.04 38.13 2.08
5228 5578 0.806102 TGCGTCGAAGCTTGCTATCC 60.806 55.000 23.50 0.00 38.13 2.59
5229 5579 0.806102 GCGTCGAAGCTTGCTATCCA 60.806 55.000 16.42 0.00 0.00 3.41
5230 5580 1.858091 CGTCGAAGCTTGCTATCCAT 58.142 50.000 2.10 0.00 0.00 3.41
5231 5581 1.524355 CGTCGAAGCTTGCTATCCATG 59.476 52.381 2.10 0.00 0.00 3.66
5232 5582 2.555199 GTCGAAGCTTGCTATCCATGT 58.445 47.619 2.10 0.00 0.00 3.21
5233 5583 2.286294 GTCGAAGCTTGCTATCCATGTG 59.714 50.000 2.10 0.00 0.00 3.21
5234 5584 1.003116 CGAAGCTTGCTATCCATGTGC 60.003 52.381 2.10 0.00 0.00 4.57
5235 5585 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
5236 5586 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
5237 5587 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
5238 5588 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
5239 5589 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
5240 5590 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
5241 5591 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
5242 5592 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
5243 5593 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
5244 5594 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
5245 5595 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
5246 5596 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
5247 5597 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
5248 5598 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
5249 5599 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
5258 5608 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
5259 5609 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
5260 5610 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
5261 5611 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
5262 5612 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
5263 5613 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
5264 5614 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
5265 5615 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
5266 5616 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
5267 5617 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
5268 5618 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
5269 5619 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
5270 5620 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
5271 5621 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
5272 5622 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
5273 5623 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
5274 5624 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
5275 5625 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
5276 5626 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
5277 5627 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
5278 5628 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
5279 5629 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
5280 5630 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
5281 5631 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
5282 5632 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
5283 5633 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
5284 5634 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
5285 5635 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
5286 5636 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
5287 5637 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
5288 5638 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
5289 5639 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
5290 5640 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
5291 5641 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
5292 5642 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
5293 5643 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
5294 5644 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
5295 5645 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
5296 5646 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5297 5647 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5307 5657 3.177997 CAACTTGTTTGGGACCAAAGG 57.822 47.619 16.33 11.81 45.16 3.11
5308 5658 1.119684 ACTTGTTTGGGACCAAAGGC 58.880 50.000 16.33 7.06 45.16 4.35
5309 5659 1.342975 ACTTGTTTGGGACCAAAGGCT 60.343 47.619 16.33 0.00 45.16 4.58
5310 5660 1.762370 CTTGTTTGGGACCAAAGGCTT 59.238 47.619 16.33 0.00 45.16 4.35
5311 5661 1.872773 TGTTTGGGACCAAAGGCTTT 58.127 45.000 16.33 6.68 45.16 3.51
5312 5662 1.484240 TGTTTGGGACCAAAGGCTTTG 59.516 47.619 28.79 28.79 45.16 2.77
5313 5663 1.484653 GTTTGGGACCAAAGGCTTTGT 59.515 47.619 31.68 22.03 45.16 2.83
5314 5664 1.872773 TTGGGACCAAAGGCTTTGTT 58.127 45.000 31.68 22.65 38.98 2.83
5315 5665 1.118838 TGGGACCAAAGGCTTTGTTG 58.881 50.000 31.68 22.18 38.98 3.33
5316 5666 1.119684 GGGACCAAAGGCTTTGTTGT 58.880 50.000 31.68 24.78 38.98 3.32
5317 5667 1.484653 GGGACCAAAGGCTTTGTTGTT 59.515 47.619 31.68 16.91 38.98 2.83
5318 5668 2.549926 GGACCAAAGGCTTTGTTGTTG 58.450 47.619 31.68 20.95 38.98 3.33
5467 5817 0.749818 TGGCGCCTCTTGTGAAAACA 60.750 50.000 29.70 0.00 0.00 2.83
5508 5858 6.183360 GGATCCTACATTTGTTTTGATCCCAG 60.183 42.308 3.84 0.00 38.23 4.45
5539 5889 6.830838 GGGATACAATTCAGAAGGTTTCATCT 59.169 38.462 9.11 0.00 39.74 2.90
5549 5899 7.000472 TCAGAAGGTTTCATCTGAACAAGAAT 59.000 34.615 3.16 0.00 46.67 2.40
5718 6068 0.322456 CACTTGGATTTCCCGCCTCA 60.322 55.000 0.00 0.00 37.93 3.86
5729 6079 1.768275 TCCCGCCTCACATTCATGTAT 59.232 47.619 0.00 0.00 39.39 2.29
5730 6080 2.172505 TCCCGCCTCACATTCATGTATT 59.827 45.455 0.00 0.00 39.39 1.89
5767 6117 3.440173 CCGCAGTTTCATAGTTCCATGTT 59.560 43.478 0.00 0.00 0.00 2.71
5802 6152 4.944962 TTTCTGACATGCTACCGATTTG 57.055 40.909 0.00 0.00 0.00 2.32
5829 6179 2.096019 GCAGCTGTTGTACTTCTTCTGC 60.096 50.000 16.64 11.85 38.81 4.26
5831 6181 3.059325 CAGCTGTTGTACTTCTTCTGCAC 60.059 47.826 5.25 0.00 0.00 4.57
5840 6190 7.233389 TGTACTTCTTCTGCACTAGAGAATT 57.767 36.000 0.00 0.00 36.61 2.17
5924 6274 7.697352 TTTGTGCAAAATGATTCTGTAAGTG 57.303 32.000 0.00 0.00 33.76 3.16
5931 6281 7.532571 CAAAATGATTCTGTAAGTGCATCTGA 58.467 34.615 0.00 0.00 33.76 3.27
5932 6282 7.692460 AAATGATTCTGTAAGTGCATCTGAA 57.308 32.000 0.00 0.00 33.76 3.02
5933 6283 7.692460 AATGATTCTGTAAGTGCATCTGAAA 57.308 32.000 0.00 0.00 33.76 2.69
5990 6340 2.124122 GTGGCGCTGAATTTCGTTTTT 58.876 42.857 7.64 0.00 0.00 1.94
6146 6496 8.247562 GTCAATTTGGTATTGTTGGCTGTAATA 58.752 33.333 0.00 0.00 0.00 0.98
6154 6504 7.335924 GGTATTGTTGGCTGTAATAGACTTGAA 59.664 37.037 0.00 0.00 34.56 2.69
6155 6505 7.759489 ATTGTTGGCTGTAATAGACTTGAAA 57.241 32.000 0.00 0.00 34.56 2.69
6192 6543 9.199982 CGTAAAATTCAGACCTGTACTCTTTAA 57.800 33.333 0.00 0.00 0.00 1.52
6231 6582 6.208599 ACCAGTACTTTGGATTTACAATGTGG 59.791 38.462 8.09 0.00 40.87 4.17
6261 6612 7.282224 TCGTTTTTAATAGTCTGGGAATGATGG 59.718 37.037 0.00 0.00 0.00 3.51
6280 6631 1.873591 GGTCGTGATTTGCTTGTCACT 59.126 47.619 11.97 0.00 41.90 3.41
6297 6648 4.257267 TCACTGGTGACTGACAATACTG 57.743 45.455 0.00 0.00 34.14 2.74
6315 6666 2.368548 ACTGCTACATGTGAACTCACCA 59.631 45.455 9.11 0.00 45.88 4.17
6372 6723 2.742053 GTGTACAAATCATCCGTGCACT 59.258 45.455 16.19 0.00 41.33 4.40
6380 6731 1.305802 ATCCGTGCACTCCTACCCA 60.306 57.895 16.19 0.00 0.00 4.51
6420 6771 1.204941 CCTCACTCTTGGACCCTAACG 59.795 57.143 0.00 0.00 0.00 3.18
6425 6776 0.606604 TCTTGGACCCTAACGAGTGC 59.393 55.000 0.00 0.00 0.00 4.40
6458 6809 1.406887 GCCGTACATGATCACCACCTT 60.407 52.381 0.00 0.00 0.00 3.50
6459 6810 2.939640 GCCGTACATGATCACCACCTTT 60.940 50.000 0.00 0.00 0.00 3.11
6460 6811 2.677836 CCGTACATGATCACCACCTTTG 59.322 50.000 0.00 0.00 0.00 2.77
6476 6849 3.706086 ACCTTTGCACCTTGAAAACATCT 59.294 39.130 0.00 0.00 0.00 2.90
6536 6914 2.009042 GCTTGTGAGCTATGGCGAAGT 61.009 52.381 0.00 0.00 45.65 3.01
6556 6934 0.178981 CGGGCCATCCTTCATCCATT 60.179 55.000 4.39 0.00 0.00 3.16
6566 6944 0.033208 TTCATCCATTGCCACCCTCC 60.033 55.000 0.00 0.00 0.00 4.30
6578 6956 0.035056 CACCCTCCTGTTGACATCCC 60.035 60.000 0.00 0.00 0.00 3.85
6580 6958 0.921896 CCCTCCTGTTGACATCCCAT 59.078 55.000 0.00 0.00 0.00 4.00
6586 6964 2.486191 CCTGTTGACATCCCATAGCCTC 60.486 54.545 0.00 0.00 0.00 4.70
6587 6965 1.138859 TGTTGACATCCCATAGCCTCG 59.861 52.381 0.00 0.00 0.00 4.63
6588 6966 1.139058 GTTGACATCCCATAGCCTCGT 59.861 52.381 0.00 0.00 0.00 4.18
6589 6967 1.040646 TGACATCCCATAGCCTCGTC 58.959 55.000 0.00 0.00 0.00 4.20
6590 6968 1.040646 GACATCCCATAGCCTCGTCA 58.959 55.000 0.00 0.00 0.00 4.35
6591 6969 1.620819 GACATCCCATAGCCTCGTCAT 59.379 52.381 0.00 0.00 0.00 3.06
6592 6970 1.620819 ACATCCCATAGCCTCGTCATC 59.379 52.381 0.00 0.00 0.00 2.92
6593 6971 1.066573 CATCCCATAGCCTCGTCATCC 60.067 57.143 0.00 0.00 0.00 3.51
6594 6972 0.105709 TCCCATAGCCTCGTCATCCA 60.106 55.000 0.00 0.00 0.00 3.41
6595 6973 0.758734 CCCATAGCCTCGTCATCCAA 59.241 55.000 0.00 0.00 0.00 3.53
6596 6974 1.270518 CCCATAGCCTCGTCATCCAAG 60.271 57.143 0.00 0.00 0.00 3.61
6597 6975 1.688735 CCATAGCCTCGTCATCCAAGA 59.311 52.381 0.00 0.00 0.00 3.02
6598 6976 2.288702 CCATAGCCTCGTCATCCAAGAG 60.289 54.545 0.00 0.00 0.00 2.85
6599 6977 2.145397 TAGCCTCGTCATCCAAGAGT 57.855 50.000 0.00 0.00 0.00 3.24
6600 6978 0.534412 AGCCTCGTCATCCAAGAGTG 59.466 55.000 0.00 0.00 0.00 3.51
6601 6979 0.247736 GCCTCGTCATCCAAGAGTGT 59.752 55.000 0.00 0.00 0.00 3.55
6602 6980 1.737363 GCCTCGTCATCCAAGAGTGTC 60.737 57.143 0.00 0.00 0.00 3.67
6603 6981 1.134965 CCTCGTCATCCAAGAGTGTCC 60.135 57.143 0.00 0.00 0.00 4.02
6604 6982 0.526211 TCGTCATCCAAGAGTGTCCG 59.474 55.000 0.00 0.00 0.00 4.79
6605 6983 0.526211 CGTCATCCAAGAGTGTCCGA 59.474 55.000 0.00 0.00 0.00 4.55
6606 6984 1.468224 CGTCATCCAAGAGTGTCCGAG 60.468 57.143 0.00 0.00 0.00 4.63
6607 6985 1.546476 GTCATCCAAGAGTGTCCGAGT 59.454 52.381 0.00 0.00 0.00 4.18
6608 6986 2.028930 GTCATCCAAGAGTGTCCGAGTT 60.029 50.000 0.00 0.00 0.00 3.01
6609 6987 3.192844 GTCATCCAAGAGTGTCCGAGTTA 59.807 47.826 0.00 0.00 0.00 2.24
6610 6988 4.023980 TCATCCAAGAGTGTCCGAGTTAT 58.976 43.478 0.00 0.00 0.00 1.89
6611 6989 4.466370 TCATCCAAGAGTGTCCGAGTTATT 59.534 41.667 0.00 0.00 0.00 1.40
6612 6990 4.884668 TCCAAGAGTGTCCGAGTTATTT 57.115 40.909 0.00 0.00 0.00 1.40
6613 6991 5.988310 TCCAAGAGTGTCCGAGTTATTTA 57.012 39.130 0.00 0.00 0.00 1.40
6614 6992 5.717119 TCCAAGAGTGTCCGAGTTATTTAC 58.283 41.667 0.00 0.00 0.00 2.01
6615 6993 4.561606 CCAAGAGTGTCCGAGTTATTTACG 59.438 45.833 0.00 0.00 0.00 3.18
6616 6994 3.767278 AGAGTGTCCGAGTTATTTACGC 58.233 45.455 0.00 0.00 0.00 4.42
6617 6995 3.192001 AGAGTGTCCGAGTTATTTACGCA 59.808 43.478 0.00 0.00 0.00 5.24
6618 6996 3.916761 AGTGTCCGAGTTATTTACGCAA 58.083 40.909 0.00 0.00 0.00 4.85
6619 6997 4.309099 AGTGTCCGAGTTATTTACGCAAA 58.691 39.130 0.00 0.00 0.00 3.68
6620 6998 4.751098 AGTGTCCGAGTTATTTACGCAAAA 59.249 37.500 0.00 0.00 0.00 2.44
6621 6999 4.842376 GTGTCCGAGTTATTTACGCAAAAC 59.158 41.667 0.00 0.00 0.00 2.43
6622 7000 4.083908 TGTCCGAGTTATTTACGCAAAACC 60.084 41.667 0.00 0.00 0.00 3.27
6623 7001 4.063689 TCCGAGTTATTTACGCAAAACCA 58.936 39.130 0.00 0.00 0.00 3.67
6624 7002 4.083908 TCCGAGTTATTTACGCAAAACCAC 60.084 41.667 0.00 0.00 0.00 4.16
6625 7003 4.153256 CGAGTTATTTACGCAAAACCACC 58.847 43.478 0.00 0.00 0.00 4.61
6626 7004 4.319622 CGAGTTATTTACGCAAAACCACCA 60.320 41.667 0.00 0.00 0.00 4.17
6627 7005 4.862350 AGTTATTTACGCAAAACCACCAC 58.138 39.130 0.00 0.00 0.00 4.16
6628 7006 4.338682 AGTTATTTACGCAAAACCACCACA 59.661 37.500 0.00 0.00 0.00 4.17
6629 7007 2.563471 TTTACGCAAAACCACCACAC 57.437 45.000 0.00 0.00 0.00 3.82
6630 7008 1.752683 TTACGCAAAACCACCACACT 58.247 45.000 0.00 0.00 0.00 3.55
6631 7009 1.752683 TACGCAAAACCACCACACTT 58.247 45.000 0.00 0.00 0.00 3.16
6632 7010 0.172352 ACGCAAAACCACCACACTTG 59.828 50.000 0.00 0.00 0.00 3.16
6636 7014 1.334384 AAAACCACCACACTTGGGGC 61.334 55.000 0.00 0.00 46.42 5.80
6637 7015 2.236959 AAACCACCACACTTGGGGCT 62.237 55.000 0.00 0.00 46.42 5.19
6638 7016 1.357272 AACCACCACACTTGGGGCTA 61.357 55.000 0.00 0.00 46.42 3.93
6639 7017 1.002134 CCACCACACTTGGGGCTAG 60.002 63.158 0.00 0.00 46.42 3.42
6640 7018 2.484287 CCACCACACTTGGGGCTAGG 62.484 65.000 0.00 0.00 46.42 3.02
6641 7019 2.677228 CCACACTTGGGGCTAGGG 59.323 66.667 0.00 0.00 39.57 3.53
6642 7020 2.231380 CCACACTTGGGGCTAGGGT 61.231 63.158 0.00 0.00 39.57 4.34
6643 7021 0.912487 CCACACTTGGGGCTAGGGTA 60.912 60.000 0.00 0.00 39.57 3.69
6644 7022 0.988832 CACACTTGGGGCTAGGGTAA 59.011 55.000 0.00 0.00 0.00 2.85
6645 7023 0.989602 ACACTTGGGGCTAGGGTAAC 59.010 55.000 0.00 0.00 0.00 2.50
6646 7024 0.988832 CACTTGGGGCTAGGGTAACA 59.011 55.000 0.00 0.00 39.74 2.41
6647 7025 1.353022 CACTTGGGGCTAGGGTAACAA 59.647 52.381 0.00 0.00 39.74 2.83
6648 7026 1.633945 ACTTGGGGCTAGGGTAACAAG 59.366 52.381 0.00 0.00 40.66 3.16
6649 7027 1.633945 CTTGGGGCTAGGGTAACAAGT 59.366 52.381 0.00 0.00 39.74 3.16
6650 7028 1.282382 TGGGGCTAGGGTAACAAGTC 58.718 55.000 0.00 0.00 39.74 3.01
6651 7029 1.282382 GGGGCTAGGGTAACAAGTCA 58.718 55.000 0.00 0.00 39.74 3.41
6652 7030 1.209747 GGGGCTAGGGTAACAAGTCAG 59.790 57.143 0.00 0.00 39.74 3.51
6653 7031 1.907255 GGGCTAGGGTAACAAGTCAGT 59.093 52.381 0.00 0.00 39.74 3.41
6654 7032 3.102204 GGGCTAGGGTAACAAGTCAGTA 58.898 50.000 0.00 0.00 39.74 2.74
6655 7033 3.118847 GGGCTAGGGTAACAAGTCAGTAC 60.119 52.174 0.00 0.00 39.74 2.73
6656 7034 3.768215 GGCTAGGGTAACAAGTCAGTACT 59.232 47.826 0.00 0.00 37.65 2.73
6657 7035 4.952335 GGCTAGGGTAACAAGTCAGTACTA 59.048 45.833 0.00 0.00 33.75 1.82
6658 7036 5.067544 GGCTAGGGTAACAAGTCAGTACTAG 59.932 48.000 0.00 0.00 33.75 2.57
6659 7037 5.884792 GCTAGGGTAACAAGTCAGTACTAGA 59.115 44.000 0.00 0.00 33.75 2.43
6660 7038 6.546772 GCTAGGGTAACAAGTCAGTACTAGAT 59.453 42.308 0.00 0.00 33.75 1.98
6661 7039 7.068470 GCTAGGGTAACAAGTCAGTACTAGATT 59.932 40.741 0.00 0.00 33.75 2.40
6662 7040 7.793948 AGGGTAACAAGTCAGTACTAGATTT 57.206 36.000 0.00 0.00 33.75 2.17
6663 7041 8.890410 AGGGTAACAAGTCAGTACTAGATTTA 57.110 34.615 0.00 0.00 33.75 1.40
6664 7042 9.317827 AGGGTAACAAGTCAGTACTAGATTTAA 57.682 33.333 0.00 0.00 33.75 1.52
6665 7043 9.583765 GGGTAACAAGTCAGTACTAGATTTAAG 57.416 37.037 0.00 0.00 33.75 1.85
6666 7044 9.085250 GGTAACAAGTCAGTACTAGATTTAAGC 57.915 37.037 0.00 0.00 33.75 3.09
6667 7045 9.085250 GTAACAAGTCAGTACTAGATTTAAGCC 57.915 37.037 0.00 0.00 33.75 4.35
6668 7046 7.241042 ACAAGTCAGTACTAGATTTAAGCCA 57.759 36.000 0.00 0.00 33.75 4.75
6669 7047 7.324178 ACAAGTCAGTACTAGATTTAAGCCAG 58.676 38.462 0.00 0.00 33.75 4.85
6670 7048 6.472686 AGTCAGTACTAGATTTAAGCCAGG 57.527 41.667 0.00 0.00 32.84 4.45
6671 7049 5.958987 AGTCAGTACTAGATTTAAGCCAGGT 59.041 40.000 0.00 0.00 32.84 4.00
6672 7050 6.097129 AGTCAGTACTAGATTTAAGCCAGGTC 59.903 42.308 0.00 0.00 32.84 3.85
6673 7051 5.955959 TCAGTACTAGATTTAAGCCAGGTCA 59.044 40.000 0.00 0.00 0.00 4.02
6674 7052 6.043411 CAGTACTAGATTTAAGCCAGGTCAC 58.957 44.000 0.00 0.00 0.00 3.67
6675 7053 5.720041 AGTACTAGATTTAAGCCAGGTCACA 59.280 40.000 0.00 0.00 0.00 3.58
6676 7054 5.499004 ACTAGATTTAAGCCAGGTCACAA 57.501 39.130 0.00 0.00 0.00 3.33
6677 7055 5.876357 ACTAGATTTAAGCCAGGTCACAAA 58.124 37.500 0.00 0.00 0.00 2.83
6678 7056 6.303839 ACTAGATTTAAGCCAGGTCACAAAA 58.696 36.000 0.00 0.00 0.00 2.44
6679 7057 6.775629 ACTAGATTTAAGCCAGGTCACAAAAA 59.224 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.477176 GCGTGTGTGCTGGTTTGGA 61.477 57.895 0.00 0.00 0.00 3.53
97 98 1.445716 CTCACCCCCTAGTAGACGCG 61.446 65.000 3.53 3.53 0.00 6.01
141 142 0.601558 GAAGTCCTGCTACGGTGACA 59.398 55.000 0.00 0.00 0.00 3.58
191 376 3.253432 TCACCGACTAATCATCGATGAGG 59.747 47.826 30.11 25.32 37.19 3.86
199 384 4.935808 GGTTTTGAGTCACCGACTAATCAT 59.064 41.667 0.00 0.00 43.53 2.45
503 730 4.437239 AGCACAGAAGGAAGATTGATACG 58.563 43.478 0.00 0.00 0.00 3.06
674 904 5.927030 ACTATCACACTGCACAATTTTACG 58.073 37.500 0.00 0.00 0.00 3.18
1065 1295 9.315525 GAGTTAGGTGATTTACTGAATAGGAAC 57.684 37.037 0.00 0.00 0.00 3.62
1120 1351 4.806247 AGTCGACATATTAGCTCAAGCAAC 59.194 41.667 19.50 0.00 45.16 4.17
1213 1444 5.389935 GCTATTCTGTCCACTTTTTGAGACG 60.390 44.000 0.00 0.00 31.46 4.18
1276 1507 4.639334 ACATAGCTAGCCATTGTCATCAG 58.361 43.478 12.13 0.00 0.00 2.90
1496 1727 5.278957 GCAAGCCTTCCAAGAAGTTCAAATA 60.279 40.000 5.50 0.00 0.00 1.40
2101 2332 4.778213 ACCATGTACCTTGATGCATACT 57.222 40.909 0.00 0.00 0.00 2.12
2143 2374 5.573146 AGAAGCACGAAAAGTTTGAAAGAG 58.427 37.500 0.00 0.00 0.00 2.85
2196 2428 2.408271 TCACTATTCAGCCAGCAAGG 57.592 50.000 0.00 0.00 41.84 3.61
2287 2519 1.229984 AACCCCCAGCCTAGAAGCT 60.230 57.895 0.00 0.00 46.45 3.74
2303 2535 9.221775 CTAAAACATCTGACACAACTAAACAAC 57.778 33.333 0.00 0.00 0.00 3.32
2305 2537 8.500753 ACTAAAACATCTGACACAACTAAACA 57.499 30.769 0.00 0.00 0.00 2.83
2306 2538 8.827677 AGACTAAAACATCTGACACAACTAAAC 58.172 33.333 0.00 0.00 0.00 2.01
2310 2542 6.823689 ACAAGACTAAAACATCTGACACAACT 59.176 34.615 0.00 0.00 0.00 3.16
2311 2543 7.011482 AGACAAGACTAAAACATCTGACACAAC 59.989 37.037 0.00 0.00 0.00 3.32
2313 2545 6.582636 AGACAAGACTAAAACATCTGACACA 58.417 36.000 0.00 0.00 0.00 3.72
2314 2546 7.484035 AAGACAAGACTAAAACATCTGACAC 57.516 36.000 0.00 0.00 0.00 3.67
2327 2606 6.769512 ACAATTCAAGCCTAAGACAAGACTA 58.230 36.000 0.00 0.00 0.00 2.59
2398 2680 6.370453 ACAACACCACTTCCCTATACTTTTT 58.630 36.000 0.00 0.00 0.00 1.94
2399 2681 5.948842 ACAACACCACTTCCCTATACTTTT 58.051 37.500 0.00 0.00 0.00 2.27
2400 2682 5.578157 ACAACACCACTTCCCTATACTTT 57.422 39.130 0.00 0.00 0.00 2.66
2448 2730 6.282199 TCCATAACACTTCAGAGAGTTACC 57.718 41.667 0.00 0.00 40.25 2.85
2474 2756 8.776470 CAATCAAATTGAGCCACATTTAAGTTT 58.224 29.630 1.10 0.00 42.83 2.66
2480 2762 5.486735 TCCAATCAAATTGAGCCACATTT 57.513 34.783 1.10 0.00 42.83 2.32
2524 2806 9.770097 TGTTTTATGAATGCAATAGGTGAAAAA 57.230 25.926 0.00 0.00 0.00 1.94
2548 2830 2.281070 CTCAAGGCGGTGCACTGT 60.281 61.111 26.00 5.18 0.00 3.55
2555 2837 1.071471 CAGACAACCTCAAGGCGGT 59.929 57.895 0.00 0.00 39.32 5.68
2556 2838 2.328099 GCAGACAACCTCAAGGCGG 61.328 63.158 0.00 0.00 39.32 6.13
2558 2840 0.538287 AAGGCAGACAACCTCAAGGC 60.538 55.000 0.00 0.00 36.14 4.35
2599 2882 7.115805 CAGTTTAGTTGCTTCGACTGTTATACA 59.884 37.037 0.00 0.00 32.12 2.29
2605 2888 3.793559 ACAGTTTAGTTGCTTCGACTGT 58.206 40.909 1.44 1.44 41.87 3.55
2610 2899 9.084164 AGTTGTATATACAGTTTAGTTGCTTCG 57.916 33.333 14.96 0.00 37.52 3.79
2656 2945 5.310409 ACACCAAGAGAGAAGAAATTCCA 57.690 39.130 0.00 0.00 0.00 3.53
2685 2974 0.109723 TAGGTCAGTTTGCCCCACAC 59.890 55.000 0.00 0.00 0.00 3.82
2751 3041 0.946221 GAACTGTGGTGACGCTGGAG 60.946 60.000 0.00 0.00 43.29 3.86
2752 3042 1.069090 GAACTGTGGTGACGCTGGA 59.931 57.895 0.00 0.00 43.29 3.86
2761 3052 4.279169 CCAAGAATGTTCATGAACTGTGGT 59.721 41.667 32.57 16.75 41.67 4.16
2798 3089 0.530870 GATAGCGTTCCTCCAGGTGC 60.531 60.000 0.00 0.00 36.34 5.01
2860 3151 5.104193 AGAGTTTCCATCATGTAGCATTCCT 60.104 40.000 0.00 0.00 0.00 3.36
2875 3166 4.389374 GAGAATTGTCACCAGAGTTTCCA 58.611 43.478 0.00 0.00 0.00 3.53
3032 3323 8.468399 ACCCTTCAAATTACAAAGTACGAAAAA 58.532 29.630 0.00 0.00 0.00 1.94
3038 3329 7.360361 CAGTGACCCTTCAAATTACAAAGTAC 58.640 38.462 0.00 0.00 31.90 2.73
3069 3360 4.980573 TGGCATTTACACTTACTCCTTGT 58.019 39.130 0.00 0.00 0.00 3.16
3245 3536 7.292319 ACTACTACAAGGGAAAAGGCTAAAAA 58.708 34.615 0.00 0.00 0.00 1.94
3323 3617 6.937465 ACAGAGAAGAAAATAGTGAAGGAACC 59.063 38.462 0.00 0.00 0.00 3.62
3324 3618 7.971183 ACAGAGAAGAAAATAGTGAAGGAAC 57.029 36.000 0.00 0.00 0.00 3.62
3389 3683 6.148480 CGAGAGAAGGATAAATTTATGCCAGG 59.852 42.308 21.88 5.49 32.58 4.45
3399 3693 4.125703 CAGCTTGCGAGAGAAGGATAAAT 58.874 43.478 4.70 0.00 0.00 1.40
3493 3787 8.874744 ATAACTGCCATGATATGAATTTAGCT 57.125 30.769 0.00 0.00 0.00 3.32
3686 3980 5.499139 TGAACTCACAGGAAAATGTTGTC 57.501 39.130 0.00 0.00 0.00 3.18
3822 4116 4.347453 CTGCTGTTGTTGGCGGGC 62.347 66.667 0.00 0.00 0.00 6.13
3880 4174 1.477553 CCCAAATATGTGCTGGCTGT 58.522 50.000 0.00 0.00 0.00 4.40
3881 4175 0.748450 CCCCAAATATGTGCTGGCTG 59.252 55.000 0.00 0.00 0.00 4.85
4082 4377 1.376543 ATTGCTGGATGAGTTGCTCG 58.623 50.000 0.00 0.00 32.35 5.03
4361 4656 1.646189 GTTCTCCTTTAGCTGGCTCG 58.354 55.000 0.00 0.00 0.00 5.03
4601 4897 7.870509 AGAGCAAAGTCAAATAATGCATAGA 57.129 32.000 0.00 0.00 39.42 1.98
4715 5011 8.736244 GCAAATGAAGGTCCACTAAAATAGTAA 58.264 33.333 0.00 0.00 37.23 2.24
4762 5058 5.291614 ACACATGAAAACAGTTGACAAATGC 59.708 36.000 15.17 0.26 0.00 3.56
4911 5207 9.199982 TCAAGAAACTTATTAGTTGTAACTCCG 57.800 33.333 0.00 0.00 43.74 4.63
4944 5240 7.054751 GGGCATAAAGGACTTCTAGTTGTATT 58.945 38.462 0.00 0.00 0.00 1.89
4947 5243 4.536489 AGGGCATAAAGGACTTCTAGTTGT 59.464 41.667 0.00 0.00 0.00 3.32
4948 5244 5.104259 AGGGCATAAAGGACTTCTAGTTG 57.896 43.478 0.00 0.00 0.00 3.16
5082 5431 7.328737 ACGATTGTAGTGTCAAGATTAGACAAC 59.671 37.037 0.00 0.00 46.50 3.32
5101 5450 2.501723 AGATAGGTCCAAGCACGATTGT 59.498 45.455 0.00 0.00 0.00 2.71
5148 5498 8.122472 ACCAATAAAGGTCAAAAGGTGATAAG 57.878 34.615 0.00 0.00 37.28 1.73
5162 5512 9.762381 TTTGGTGATAAATAGACCAATAAAGGT 57.238 29.630 0.00 0.00 46.55 3.50
5168 5518 7.349598 AGCTCTTTGGTGATAAATAGACCAAT 58.650 34.615 0.00 0.00 46.55 3.16
5169 5519 6.721318 AGCTCTTTGGTGATAAATAGACCAA 58.279 36.000 0.00 0.00 45.86 3.67
5170 5520 6.313519 AGCTCTTTGGTGATAAATAGACCA 57.686 37.500 0.00 0.00 38.01 4.02
5171 5521 6.425417 GCTAGCTCTTTGGTGATAAATAGACC 59.575 42.308 7.70 0.00 0.00 3.85
5172 5522 7.213678 AGCTAGCTCTTTGGTGATAAATAGAC 58.786 38.462 12.68 0.00 0.00 2.59
5173 5523 7.366847 AGCTAGCTCTTTGGTGATAAATAGA 57.633 36.000 12.68 0.00 0.00 1.98
5174 5524 9.149225 CATAGCTAGCTCTTTGGTGATAAATAG 57.851 37.037 23.26 0.00 0.00 1.73
5176 5526 6.939163 CCATAGCTAGCTCTTTGGTGATAAAT 59.061 38.462 23.26 0.70 32.65 1.40
5178 5528 5.602561 TCCATAGCTAGCTCTTTGGTGATAA 59.397 40.000 27.50 14.22 36.79 1.75
5180 5530 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
5181 5531 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
5182 5532 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
5183 5533 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
5184 5534 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
5185 5535 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
5186 5536 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
5187 5537 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
5188 5538 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
5189 5539 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
5190 5540 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
5191 5541 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
5192 5542 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
5194 5544 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
5195 5545 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
5196 5546 1.144057 GACGCACCCCTGTCCATAG 59.856 63.158 0.00 0.00 0.00 2.23
5197 5547 2.717044 CGACGCACCCCTGTCCATA 61.717 63.158 0.00 0.00 0.00 2.74
5198 5548 4.082523 CGACGCACCCCTGTCCAT 62.083 66.667 0.00 0.00 0.00 3.41
5200 5550 3.934391 CTTCGACGCACCCCTGTCC 62.934 68.421 0.00 0.00 0.00 4.02
5201 5551 2.432628 CTTCGACGCACCCCTGTC 60.433 66.667 0.00 0.00 0.00 3.51
5202 5552 4.681978 GCTTCGACGCACCCCTGT 62.682 66.667 9.30 0.00 0.00 4.00
5203 5553 3.883744 AAGCTTCGACGCACCCCTG 62.884 63.158 16.85 0.00 0.00 4.45
5204 5554 3.626924 AAGCTTCGACGCACCCCT 61.627 61.111 16.85 0.00 0.00 4.79
5205 5555 3.423154 CAAGCTTCGACGCACCCC 61.423 66.667 16.85 0.00 0.00 4.95
5206 5556 4.090057 GCAAGCTTCGACGCACCC 62.090 66.667 16.85 0.00 0.00 4.61
5207 5557 1.084370 ATAGCAAGCTTCGACGCACC 61.084 55.000 16.85 3.69 0.00 5.01
5208 5558 0.299003 GATAGCAAGCTTCGACGCAC 59.701 55.000 16.85 5.14 0.00 5.34
5209 5559 0.806102 GGATAGCAAGCTTCGACGCA 60.806 55.000 16.85 0.00 0.00 5.24
5210 5560 0.806102 TGGATAGCAAGCTTCGACGC 60.806 55.000 5.63 5.63 0.00 5.19
5211 5561 1.524355 CATGGATAGCAAGCTTCGACG 59.476 52.381 0.00 0.00 0.00 5.12
5212 5562 2.286294 CACATGGATAGCAAGCTTCGAC 59.714 50.000 0.00 0.00 0.00 4.20
5213 5563 2.554142 CACATGGATAGCAAGCTTCGA 58.446 47.619 0.00 0.00 0.00 3.71
5214 5564 1.003116 GCACATGGATAGCAAGCTTCG 60.003 52.381 0.00 0.00 0.00 3.79
5215 5565 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
5216 5566 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
5217 5567 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
5218 5568 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
5219 5569 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
5220 5570 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
5221 5571 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
5222 5572 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
5223 5573 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
5224 5574 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
5225 5575 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
5226 5576 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
5227 5577 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
5228 5578 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
5229 5579 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
5230 5580 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
5231 5581 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
5232 5582 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
5233 5583 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
5241 5591 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
5242 5592 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
5243 5593 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
5244 5594 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
5245 5595 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
5246 5596 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
5247 5597 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
5248 5598 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
5249 5599 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
5250 5600 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
5251 5601 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
5252 5602 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
5267 5617 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
5268 5618 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
5269 5619 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
5270 5620 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
5271 5621 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
5272 5622 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
5273 5623 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
5274 5624 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
5275 5625 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5276 5626 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5277 5627 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5278 5628 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5287 5637 2.741553 GCCTTTGGTCCCAAACAAGTTG 60.742 50.000 7.40 0.00 40.51 3.16
5288 5638 1.484653 GCCTTTGGTCCCAAACAAGTT 59.515 47.619 7.40 0.00 40.51 2.66
5289 5639 1.119684 GCCTTTGGTCCCAAACAAGT 58.880 50.000 7.40 0.00 40.51 3.16
5290 5640 1.413118 AGCCTTTGGTCCCAAACAAG 58.587 50.000 7.40 0.00 40.51 3.16
5291 5641 1.872773 AAGCCTTTGGTCCCAAACAA 58.127 45.000 7.40 0.00 40.51 2.83
5292 5642 1.484240 CAAAGCCTTTGGTCCCAAACA 59.516 47.619 9.37 0.00 40.51 2.83
5293 5643 1.484653 ACAAAGCCTTTGGTCCCAAAC 59.515 47.619 20.55 0.00 44.81 2.93
5294 5644 1.872773 ACAAAGCCTTTGGTCCCAAA 58.127 45.000 20.55 10.87 44.81 3.28
5295 5645 1.484240 CAACAAAGCCTTTGGTCCCAA 59.516 47.619 20.55 0.00 44.81 4.12
5296 5646 1.118838 CAACAAAGCCTTTGGTCCCA 58.881 50.000 20.55 0.00 44.81 4.37
5297 5647 1.119684 ACAACAAAGCCTTTGGTCCC 58.880 50.000 20.55 0.00 44.81 4.46
5298 5648 2.093711 ACAACAACAAAGCCTTTGGTCC 60.094 45.455 20.55 0.00 44.81 4.46
5299 5649 3.245518 ACAACAACAAAGCCTTTGGTC 57.754 42.857 20.55 0.00 44.81 4.02
5300 5650 3.007398 TCAACAACAACAAAGCCTTTGGT 59.993 39.130 20.55 12.23 44.81 3.67
5301 5651 3.594134 TCAACAACAACAAAGCCTTTGG 58.406 40.909 20.55 6.98 44.81 3.28
5302 5652 5.500610 CGATTCAACAACAACAAAGCCTTTG 60.501 40.000 15.47 15.47 45.95 2.77
5303 5653 4.566360 CGATTCAACAACAACAAAGCCTTT 59.434 37.500 0.00 0.00 0.00 3.11
5304 5654 4.111916 CGATTCAACAACAACAAAGCCTT 58.888 39.130 0.00 0.00 0.00 4.35
5305 5655 3.380004 TCGATTCAACAACAACAAAGCCT 59.620 39.130 0.00 0.00 0.00 4.58
5306 5656 3.701241 TCGATTCAACAACAACAAAGCC 58.299 40.909 0.00 0.00 0.00 4.35
5307 5657 5.694674 TTTCGATTCAACAACAACAAAGC 57.305 34.783 0.00 0.00 0.00 3.51
5308 5658 6.639212 CCATTTCGATTCAACAACAACAAAG 58.361 36.000 0.00 0.00 0.00 2.77
5309 5659 5.006165 GCCATTTCGATTCAACAACAACAAA 59.994 36.000 0.00 0.00 0.00 2.83
5310 5660 4.505922 GCCATTTCGATTCAACAACAACAA 59.494 37.500 0.00 0.00 0.00 2.83
5311 5661 4.047822 GCCATTTCGATTCAACAACAACA 58.952 39.130 0.00 0.00 0.00 3.33
5312 5662 3.428534 GGCCATTTCGATTCAACAACAAC 59.571 43.478 0.00 0.00 0.00 3.32
5313 5663 3.320541 AGGCCATTTCGATTCAACAACAA 59.679 39.130 5.01 0.00 0.00 2.83
5314 5664 2.890311 AGGCCATTTCGATTCAACAACA 59.110 40.909 5.01 0.00 0.00 3.33
5315 5665 3.244976 CAGGCCATTTCGATTCAACAAC 58.755 45.455 5.01 0.00 0.00 3.32
5316 5666 2.230992 CCAGGCCATTTCGATTCAACAA 59.769 45.455 5.01 0.00 0.00 2.83
5317 5667 1.818060 CCAGGCCATTTCGATTCAACA 59.182 47.619 5.01 0.00 0.00 3.33
5318 5668 1.469767 GCCAGGCCATTTCGATTCAAC 60.470 52.381 5.01 0.00 0.00 3.18
5467 5817 2.431057 GGATCCTCGTTCATACAGTGGT 59.569 50.000 3.84 0.00 0.00 4.16
5508 5858 3.281727 TCTGAATTGTATCCCACAGGC 57.718 47.619 0.00 0.00 38.72 4.85
5549 5899 6.015434 TGCGATCAGGCTATAAAGACTATCAA 60.015 38.462 0.00 0.00 40.00 2.57
5729 6079 2.948979 CTGCGGCATTAGGGACATAAAA 59.051 45.455 1.75 0.00 0.00 1.52
5730 6080 2.092646 ACTGCGGCATTAGGGACATAAA 60.093 45.455 1.75 0.00 0.00 1.40
5767 6117 2.266689 GAAAAGCCGGGCCTACGA 59.733 61.111 17.02 0.00 35.47 3.43
5829 6179 7.851508 TGAAGAAAAACGACAATTCTCTAGTG 58.148 34.615 0.00 0.00 32.45 2.74
5831 6181 8.171840 GGATGAAGAAAAACGACAATTCTCTAG 58.828 37.037 0.00 0.00 32.45 2.43
5840 6190 3.114668 TCCGGATGAAGAAAAACGACA 57.885 42.857 0.00 0.00 0.00 4.35
5964 6314 2.742774 GAAATTCAGCGCCACAAAGTT 58.257 42.857 2.29 0.00 0.00 2.66
5990 6340 0.179020 CACACAAGTCCTGCCCAGAA 60.179 55.000 0.00 0.00 0.00 3.02
6050 6400 6.049149 GCTACATGTCTAAAGCTACCATCAA 58.951 40.000 0.00 0.00 32.18 2.57
6146 6496 7.739498 TTACGGAAGCTAAAATTTCAAGTCT 57.261 32.000 0.00 0.00 0.00 3.24
6154 6504 8.027189 GGTCTGAATTTTACGGAAGCTAAAATT 58.973 33.333 13.97 13.97 42.64 1.82
6155 6505 7.393515 AGGTCTGAATTTTACGGAAGCTAAAAT 59.606 33.333 0.00 0.00 38.10 1.82
6165 6516 5.721232 AGAGTACAGGTCTGAATTTTACGG 58.279 41.667 4.84 0.00 0.00 4.02
6192 6543 9.886132 CCAAAGTACTGGTAATTAACTCATAGT 57.114 33.333 1.50 0.00 0.00 2.12
6209 6560 5.185056 GGCCACATTGTAAATCCAAAGTACT 59.815 40.000 0.00 0.00 0.00 2.73
6231 6582 3.626217 CCCAGACTATTAAAAACGAGGGC 59.374 47.826 0.00 0.00 0.00 5.19
6280 6631 3.576550 TGTAGCAGTATTGTCAGTCACCA 59.423 43.478 0.00 0.00 0.00 4.17
6315 6666 4.473444 ACCTTCACACATTTCACCAGATT 58.527 39.130 0.00 0.00 0.00 2.40
6380 6731 1.160137 GCTTTGCACGTCTGAATCCT 58.840 50.000 0.00 0.00 0.00 3.24
6442 6793 3.081061 GTGCAAAGGTGGTGATCATGTA 58.919 45.455 0.00 0.00 0.00 2.29
6445 6796 1.076024 AGGTGCAAAGGTGGTGATCAT 59.924 47.619 0.00 0.00 0.00 2.45
6458 6809 2.364970 CCCAGATGTTTTCAAGGTGCAA 59.635 45.455 0.00 0.00 0.00 4.08
6459 6810 1.962807 CCCAGATGTTTTCAAGGTGCA 59.037 47.619 0.00 0.00 0.00 4.57
6460 6811 1.273327 CCCCAGATGTTTTCAAGGTGC 59.727 52.381 0.00 0.00 0.00 5.01
6476 6849 1.460255 CTTCAAGGTCCTTGCCCCA 59.540 57.895 24.66 6.69 40.84 4.96
6536 6914 1.061905 ATGGATGAAGGATGGCCCGA 61.062 55.000 0.00 0.00 40.87 5.14
6556 6934 1.426251 ATGTCAACAGGAGGGTGGCA 61.426 55.000 0.00 0.00 0.00 4.92
6566 6944 2.804572 CGAGGCTATGGGATGTCAACAG 60.805 54.545 0.00 0.00 0.00 3.16
6578 6956 2.363680 ACTCTTGGATGACGAGGCTATG 59.636 50.000 0.00 0.00 0.00 2.23
6580 6958 1.751351 CACTCTTGGATGACGAGGCTA 59.249 52.381 0.00 0.00 0.00 3.93
6586 6964 0.526211 TCGGACACTCTTGGATGACG 59.474 55.000 0.00 0.00 0.00 4.35
6587 6965 1.546476 ACTCGGACACTCTTGGATGAC 59.454 52.381 0.00 0.00 0.00 3.06
6588 6966 1.924731 ACTCGGACACTCTTGGATGA 58.075 50.000 0.00 0.00 0.00 2.92
6589 6967 2.751166 AACTCGGACACTCTTGGATG 57.249 50.000 0.00 0.00 0.00 3.51
6590 6968 5.422214 AAATAACTCGGACACTCTTGGAT 57.578 39.130 0.00 0.00 0.00 3.41
6591 6969 4.884668 AAATAACTCGGACACTCTTGGA 57.115 40.909 0.00 0.00 0.00 3.53
6592 6970 4.561606 CGTAAATAACTCGGACACTCTTGG 59.438 45.833 0.00 0.00 0.00 3.61
6593 6971 4.031426 GCGTAAATAACTCGGACACTCTTG 59.969 45.833 0.00 0.00 0.00 3.02
6594 6972 4.171754 GCGTAAATAACTCGGACACTCTT 58.828 43.478 0.00 0.00 0.00 2.85
6595 6973 3.192001 TGCGTAAATAACTCGGACACTCT 59.808 43.478 0.00 0.00 0.00 3.24
6596 6974 3.504863 TGCGTAAATAACTCGGACACTC 58.495 45.455 0.00 0.00 0.00 3.51
6597 6975 3.581024 TGCGTAAATAACTCGGACACT 57.419 42.857 0.00 0.00 0.00 3.55
6598 6976 4.650545 TTTGCGTAAATAACTCGGACAC 57.349 40.909 0.00 0.00 0.00 3.67
6599 6977 4.083908 GGTTTTGCGTAAATAACTCGGACA 60.084 41.667 0.00 0.00 0.00 4.02
6600 6978 4.083908 TGGTTTTGCGTAAATAACTCGGAC 60.084 41.667 0.00 0.00 0.00 4.79
6601 6979 4.063689 TGGTTTTGCGTAAATAACTCGGA 58.936 39.130 0.00 0.00 0.00 4.55
6602 6980 4.153256 GTGGTTTTGCGTAAATAACTCGG 58.847 43.478 0.00 0.00 0.00 4.63
6603 6981 4.153256 GGTGGTTTTGCGTAAATAACTCG 58.847 43.478 0.00 0.00 0.00 4.18
6604 6982 4.913345 GTGGTGGTTTTGCGTAAATAACTC 59.087 41.667 0.00 0.00 0.00 3.01
6605 6983 4.338682 TGTGGTGGTTTTGCGTAAATAACT 59.661 37.500 0.00 0.00 0.00 2.24
6606 6984 4.441744 GTGTGGTGGTTTTGCGTAAATAAC 59.558 41.667 0.00 0.00 0.00 1.89
6607 6985 4.338682 AGTGTGGTGGTTTTGCGTAAATAA 59.661 37.500 0.00 0.00 0.00 1.40
6608 6986 3.884091 AGTGTGGTGGTTTTGCGTAAATA 59.116 39.130 0.00 0.00 0.00 1.40
6609 6987 2.691011 AGTGTGGTGGTTTTGCGTAAAT 59.309 40.909 0.00 0.00 0.00 1.40
6610 6988 2.093106 AGTGTGGTGGTTTTGCGTAAA 58.907 42.857 0.00 0.00 0.00 2.01
6611 6989 1.752683 AGTGTGGTGGTTTTGCGTAA 58.247 45.000 0.00 0.00 0.00 3.18
6612 6990 1.402259 CAAGTGTGGTGGTTTTGCGTA 59.598 47.619 0.00 0.00 0.00 4.42
6613 6991 0.172352 CAAGTGTGGTGGTTTTGCGT 59.828 50.000 0.00 0.00 0.00 5.24
6614 6992 0.527385 CCAAGTGTGGTGGTTTTGCG 60.527 55.000 0.00 0.00 40.42 4.85
6615 6993 0.179086 CCCAAGTGTGGTGGTTTTGC 60.179 55.000 0.00 0.00 44.30 3.68
6616 6994 0.463620 CCCCAAGTGTGGTGGTTTTG 59.536 55.000 0.00 0.00 44.30 2.44
6617 6995 1.334384 GCCCCAAGTGTGGTGGTTTT 61.334 55.000 0.00 0.00 44.30 2.43
6618 6996 1.760480 GCCCCAAGTGTGGTGGTTT 60.760 57.895 0.00 0.00 44.30 3.27
6619 6997 1.357272 TAGCCCCAAGTGTGGTGGTT 61.357 55.000 0.00 0.00 44.30 3.67
6620 6998 1.772567 TAGCCCCAAGTGTGGTGGT 60.773 57.895 0.00 0.00 44.30 4.16
6621 6999 1.002134 CTAGCCCCAAGTGTGGTGG 60.002 63.158 0.00 0.00 44.30 4.61
6622 7000 1.002134 CCTAGCCCCAAGTGTGGTG 60.002 63.158 0.00 0.00 44.30 4.17
6623 7001 2.231380 CCCTAGCCCCAAGTGTGGT 61.231 63.158 0.00 0.00 44.30 4.16
6624 7002 0.912487 TACCCTAGCCCCAAGTGTGG 60.912 60.000 0.00 0.00 45.53 4.17
6625 7003 0.988832 TTACCCTAGCCCCAAGTGTG 59.011 55.000 0.00 0.00 0.00 3.82
6626 7004 0.989602 GTTACCCTAGCCCCAAGTGT 59.010 55.000 0.00 0.00 0.00 3.55
6627 7005 0.988832 TGTTACCCTAGCCCCAAGTG 59.011 55.000 0.00 0.00 0.00 3.16
6628 7006 1.633945 CTTGTTACCCTAGCCCCAAGT 59.366 52.381 0.00 0.00 0.00 3.16
6629 7007 1.633945 ACTTGTTACCCTAGCCCCAAG 59.366 52.381 0.00 0.00 36.32 3.61
6630 7008 1.631898 GACTTGTTACCCTAGCCCCAA 59.368 52.381 0.00 0.00 0.00 4.12
6631 7009 1.282382 GACTTGTTACCCTAGCCCCA 58.718 55.000 0.00 0.00 0.00 4.96
6632 7010 1.209747 CTGACTTGTTACCCTAGCCCC 59.790 57.143 0.00 0.00 0.00 5.80
6633 7011 1.907255 ACTGACTTGTTACCCTAGCCC 59.093 52.381 0.00 0.00 0.00 5.19
6634 7012 3.768215 AGTACTGACTTGTTACCCTAGCC 59.232 47.826 0.00 0.00 28.61 3.93
6635 7013 5.884792 TCTAGTACTGACTTGTTACCCTAGC 59.115 44.000 5.39 0.00 37.10 3.42
6636 7014 8.522542 AATCTAGTACTGACTTGTTACCCTAG 57.477 38.462 5.39 0.00 37.10 3.02
6637 7015 8.890410 AAATCTAGTACTGACTTGTTACCCTA 57.110 34.615 5.39 0.00 37.10 3.53
6638 7016 7.793948 AAATCTAGTACTGACTTGTTACCCT 57.206 36.000 5.39 0.00 37.10 4.34
6639 7017 9.583765 CTTAAATCTAGTACTGACTTGTTACCC 57.416 37.037 5.39 0.00 37.10 3.69
6640 7018 9.085250 GCTTAAATCTAGTACTGACTTGTTACC 57.915 37.037 5.39 0.00 37.10 2.85
6641 7019 9.085250 GGCTTAAATCTAGTACTGACTTGTTAC 57.915 37.037 5.39 0.00 37.10 2.50
6642 7020 8.809066 TGGCTTAAATCTAGTACTGACTTGTTA 58.191 33.333 5.39 0.00 37.10 2.41
6643 7021 7.676947 TGGCTTAAATCTAGTACTGACTTGTT 58.323 34.615 5.39 0.00 37.10 2.83
6644 7022 7.241042 TGGCTTAAATCTAGTACTGACTTGT 57.759 36.000 5.39 0.00 37.10 3.16
6645 7023 6.758886 CCTGGCTTAAATCTAGTACTGACTTG 59.241 42.308 5.39 0.00 37.10 3.16
6646 7024 6.440965 ACCTGGCTTAAATCTAGTACTGACTT 59.559 38.462 5.39 0.23 37.10 3.01
6647 7025 5.958987 ACCTGGCTTAAATCTAGTACTGACT 59.041 40.000 5.39 0.00 39.92 3.41
6648 7026 6.127423 TGACCTGGCTTAAATCTAGTACTGAC 60.127 42.308 5.39 0.00 0.00 3.51
6649 7027 5.955959 TGACCTGGCTTAAATCTAGTACTGA 59.044 40.000 5.39 1.42 0.00 3.41
6650 7028 6.043411 GTGACCTGGCTTAAATCTAGTACTG 58.957 44.000 5.39 0.00 0.00 2.74
6651 7029 5.720041 TGTGACCTGGCTTAAATCTAGTACT 59.280 40.000 0.00 0.00 0.00 2.73
6652 7030 5.974108 TGTGACCTGGCTTAAATCTAGTAC 58.026 41.667 0.00 0.00 0.00 2.73
6653 7031 6.614694 TTGTGACCTGGCTTAAATCTAGTA 57.385 37.500 0.00 0.00 0.00 1.82
6654 7032 5.499004 TTGTGACCTGGCTTAAATCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
6655 7033 6.817765 TTTTGTGACCTGGCTTAAATCTAG 57.182 37.500 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.