Multiple sequence alignment - TraesCS1A01G304200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G304200 chr1A 100.000 6990 0 0 1 6990 497510046 497503057 0.000000e+00 12909.0
1 TraesCS1A01G304200 chr1B 92.553 5801 269 79 502 6217 539552557 539546835 0.000000e+00 8168.0
2 TraesCS1A01G304200 chr1B 89.238 223 15 6 94 313 539552947 539552731 3.210000e-68 270.0
3 TraesCS1A01G304200 chr1B 85.039 254 32 4 6739 6990 539546591 539546342 3.240000e-63 254.0
4 TraesCS1A01G304200 chr1B 94.565 92 5 0 6200 6291 539546822 539546731 7.310000e-30 143.0
5 TraesCS1A01G304200 chr1B 92.593 54 2 2 37 89 630725647 630725699 7.520000e-10 76.8
6 TraesCS1A01G304200 chr1B 85.915 71 4 2 330 394 539552695 539552625 3.500000e-08 71.3
7 TraesCS1A01G304200 chr1D 95.980 3358 91 16 2915 6270 401669810 401666495 0.000000e+00 5413.0
8 TraesCS1A01G304200 chr1D 88.321 2894 178 82 86 2909 401672652 401669849 0.000000e+00 3325.0
9 TraesCS1A01G304200 chr1D 90.490 694 39 7 6299 6990 401659717 401659049 0.000000e+00 891.0
10 TraesCS1A01G304200 chr2D 89.722 360 31 5 6380 6736 32759325 32758969 8.270000e-124 455.0
11 TraesCS1A01G304200 chr2D 83.379 367 58 3 6372 6736 440587021 440587386 3.120000e-88 337.0
12 TraesCS1A01G304200 chr7B 87.056 394 43 8 6366 6755 748589631 748589242 8.320000e-119 438.0
13 TraesCS1A01G304200 chr7B 82.292 384 63 4 6363 6744 58714882 58715262 1.880000e-85 327.0
14 TraesCS1A01G304200 chr2B 87.158 366 43 4 6372 6735 507194021 507194384 5.050000e-111 412.0
15 TraesCS1A01G304200 chr2B 86.908 359 37 8 6384 6736 54438276 54437922 1.830000e-105 394.0
16 TraesCS1A01G304200 chr5D 86.216 370 40 7 6375 6736 556724142 556723776 2.360000e-104 390.0
17 TraesCS1A01G304200 chr5D 86.905 84 11 0 5491 5574 502596503 502596586 2.080000e-15 95.3
18 TraesCS1A01G304200 chr7A 91.039 279 20 4 4179 4455 665381121 665380846 8.560000e-99 372.0
19 TraesCS1A01G304200 chr7A 84.270 89 12 2 5483 5570 55395674 55395587 1.250000e-12 86.1
20 TraesCS1A01G304200 chr7A 82.759 87 14 1 1 86 399732778 399732864 7.520000e-10 76.8
21 TraesCS1A01G304200 chrUn 84.865 370 50 6 6371 6736 136334772 136334405 1.110000e-97 368.0
22 TraesCS1A01G304200 chrUn 95.455 44 2 0 5259 5302 372039638 372039595 3.500000e-08 71.3
23 TraesCS1A01G304200 chrUn 95.455 44 2 0 5259 5302 372064323 372064366 3.500000e-08 71.3
24 TraesCS1A01G304200 chr3D 83.217 143 22 2 5480 5621 48365727 48365586 5.690000e-26 130.0
25 TraesCS1A01G304200 chr4B 79.747 158 23 9 5199 5352 94766373 94766525 9.590000e-19 106.0
26 TraesCS1A01G304200 chr4B 89.655 58 6 0 35 92 408085152 408085095 2.700000e-09 75.0
27 TraesCS1A01G304200 chr4B 92.308 52 2 2 38 88 454869781 454869831 9.730000e-09 73.1
28 TraesCS1A01G304200 chr5B 86.517 89 11 1 5491 5579 626338256 626338343 5.770000e-16 97.1
29 TraesCS1A01G304200 chr5B 86.517 89 11 1 5491 5579 631464678 631464765 5.770000e-16 97.1
30 TraesCS1A01G304200 chr5A 86.517 89 11 1 5491 5579 631330421 631330508 5.770000e-16 97.1
31 TraesCS1A01G304200 chr3A 86.364 88 12 0 5483 5570 96682833 96682746 5.770000e-16 97.1
32 TraesCS1A01G304200 chr6B 85.057 87 11 2 5217 5302 24916692 24916607 3.470000e-13 87.9
33 TraesCS1A01G304200 chr7D 94.000 50 3 0 37 86 356453566 356453517 7.520000e-10 76.8
34 TraesCS1A01G304200 chr6A 82.022 89 14 2 5215 5302 14411599 14411512 2.700000e-09 75.0
35 TraesCS1A01G304200 chr3B 87.692 65 7 1 20 83 1425293 1425357 2.700000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G304200 chr1A 497503057 497510046 6989 True 12909.00 12909 100.0000 1 6990 1 chr1A.!!$R1 6989
1 TraesCS1A01G304200 chr1B 539546342 539552947 6605 True 1781.26 8168 89.4620 94 6990 5 chr1B.!!$R1 6896
2 TraesCS1A01G304200 chr1D 401666495 401672652 6157 True 4369.00 5413 92.1505 86 6270 2 chr1D.!!$R2 6184
3 TraesCS1A01G304200 chr1D 401659049 401659717 668 True 891.00 891 90.4900 6299 6990 1 chr1D.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 581 0.099791 GTCGGCTCTCTCTTTCCTCG 59.900 60.000 0.0 0.0 0.0 4.63 F
1179 1249 0.106708 TGCTTTGCTCACCTCGTTCT 59.893 50.000 0.0 0.0 0.0 3.01 F
1182 1252 0.179059 TTTGCTCACCTCGTTCTGCA 60.179 50.000 0.0 0.0 0.0 4.41 F
1186 1256 0.247460 CTCACCTCGTTCTGCATGGA 59.753 55.000 0.0 0.0 0.0 3.41 F
1261 1332 0.683504 ACTACCCGTCGAGCTGGAAT 60.684 55.000 0.0 0.0 0.0 3.01 F
2570 2673 1.338200 CGCTTACAGGCCTCTTCAAGT 60.338 52.381 0.0 0.0 0.0 3.16 F
4033 4173 0.314302 AAGTGAGTCTGTTCCCGTCG 59.686 55.000 0.0 0.0 0.0 5.12 F
4320 4460 0.251165 CCGGTGGGGTTCTTGTGATT 60.251 55.000 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2266 0.095417 GACGAGGAGTTTGCGAATGC 59.905 55.000 0.00 0.0 43.20 3.56 R
2270 2362 1.178276 TTGTGCCCGTCAACTTGTTT 58.822 45.000 0.00 0.0 0.00 2.83 R
2506 2609 2.537633 AATGGCTGTCCACCAATCAT 57.462 45.000 0.00 0.0 46.92 2.45 R
2946 3085 7.315890 GCAGAAAGCATTTTCAGTAATAGGTT 58.684 34.615 1.77 0.0 44.14 3.50 R
3226 3365 3.390135 TGTTGCTTTAGAGAGTCAACCG 58.610 45.455 0.00 0.0 35.10 4.44 R
4320 4460 0.541764 GTCCCACCAAAATGAGGGCA 60.542 55.000 0.00 0.0 41.22 5.36 R
5944 6088 1.222115 GCATGTAATCGGACGCCTCC 61.222 60.000 0.00 0.0 0.00 4.30 R
6270 6472 1.154150 GAGTGCACATCAAAGGCGC 60.154 57.895 21.04 0.0 38.28 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.437928 TCTTCAATTATTTGTGTGTCACAGC 58.562 36.000 5.74 2.40 45.39 4.40
26 27 5.764487 TCAATTATTTGTGTGTCACAGCA 57.236 34.783 5.74 5.10 45.39 4.41
27 28 6.330004 TCAATTATTTGTGTGTCACAGCAT 57.670 33.333 5.74 1.52 45.39 3.79
28 29 6.380995 TCAATTATTTGTGTGTCACAGCATC 58.619 36.000 5.74 0.00 45.39 3.91
29 30 6.207221 TCAATTATTTGTGTGTCACAGCATCT 59.793 34.615 5.74 1.88 45.39 2.90
30 31 7.390162 TCAATTATTTGTGTGTCACAGCATCTA 59.610 33.333 5.74 1.06 45.39 1.98
31 32 7.686438 ATTATTTGTGTGTCACAGCATCTAA 57.314 32.000 5.74 8.61 45.39 2.10
32 33 7.503521 TTATTTGTGTGTCACAGCATCTAAA 57.496 32.000 5.74 2.55 45.39 1.85
33 34 5.826601 TTTGTGTGTCACAGCATCTAAAA 57.173 34.783 5.74 0.00 45.39 1.52
34 35 5.422666 TTGTGTGTCACAGCATCTAAAAG 57.577 39.130 5.74 0.00 45.39 2.27
35 36 4.450976 TGTGTGTCACAGCATCTAAAAGT 58.549 39.130 5.74 0.00 39.62 2.66
36 37 4.511454 TGTGTGTCACAGCATCTAAAAGTC 59.489 41.667 5.74 0.00 39.62 3.01
37 38 4.752101 GTGTGTCACAGCATCTAAAAGTCT 59.248 41.667 5.74 0.00 34.08 3.24
38 39 5.926542 GTGTGTCACAGCATCTAAAAGTCTA 59.073 40.000 5.74 0.00 34.08 2.59
39 40 6.090088 GTGTGTCACAGCATCTAAAAGTCTAG 59.910 42.308 5.74 0.00 34.08 2.43
40 41 6.159988 GTGTCACAGCATCTAAAAGTCTAGT 58.840 40.000 0.00 0.00 0.00 2.57
41 42 6.647067 GTGTCACAGCATCTAAAAGTCTAGTT 59.353 38.462 0.00 0.00 0.00 2.24
42 43 6.646653 TGTCACAGCATCTAAAAGTCTAGTTG 59.353 38.462 0.00 0.00 0.00 3.16
43 44 6.868864 GTCACAGCATCTAAAAGTCTAGTTGA 59.131 38.462 0.00 0.00 0.00 3.18
44 45 6.868864 TCACAGCATCTAAAAGTCTAGTTGAC 59.131 38.462 0.00 0.00 45.67 3.18
58 59 7.630470 GTCTAGTTGACATGTATGATACTGC 57.370 40.000 0.00 0.00 44.73 4.40
59 60 7.429633 GTCTAGTTGACATGTATGATACTGCT 58.570 38.462 0.00 0.00 44.73 4.24
60 61 7.923344 GTCTAGTTGACATGTATGATACTGCTT 59.077 37.037 0.00 0.00 44.73 3.91
61 62 9.131791 TCTAGTTGACATGTATGATACTGCTTA 57.868 33.333 0.00 0.00 0.00 3.09
62 63 9.920133 CTAGTTGACATGTATGATACTGCTTAT 57.080 33.333 0.00 0.00 0.00 1.73
63 64 8.599055 AGTTGACATGTATGATACTGCTTATG 57.401 34.615 0.00 1.77 0.00 1.90
64 65 8.424133 AGTTGACATGTATGATACTGCTTATGA 58.576 33.333 0.00 0.00 0.00 2.15
65 66 9.212641 GTTGACATGTATGATACTGCTTATGAT 57.787 33.333 0.00 0.00 0.00 2.45
67 68 9.860898 TGACATGTATGATACTGCTTATGATAC 57.139 33.333 0.00 7.89 37.62 2.24
72 73 9.520515 TGTATGATACTGCTTATGATACTCTCA 57.479 33.333 4.03 0.00 37.85 3.27
79 80 8.879342 ACTGCTTATGATACTCTCATTACAAC 57.121 34.615 0.00 0.00 42.07 3.32
80 81 7.928706 ACTGCTTATGATACTCTCATTACAACC 59.071 37.037 0.00 0.00 42.07 3.77
81 82 7.791029 TGCTTATGATACTCTCATTACAACCA 58.209 34.615 0.00 0.00 42.07 3.67
82 83 7.928167 TGCTTATGATACTCTCATTACAACCAG 59.072 37.037 0.00 0.00 42.07 4.00
83 84 7.095439 GCTTATGATACTCTCATTACAACCAGC 60.095 40.741 0.00 0.00 42.07 4.85
84 85 5.023533 TGATACTCTCATTACAACCAGCC 57.976 43.478 0.00 0.00 0.00 4.85
85 86 4.716784 TGATACTCTCATTACAACCAGCCT 59.283 41.667 0.00 0.00 0.00 4.58
86 87 3.618690 ACTCTCATTACAACCAGCCTC 57.381 47.619 0.00 0.00 0.00 4.70
87 88 2.906389 ACTCTCATTACAACCAGCCTCA 59.094 45.455 0.00 0.00 0.00 3.86
88 89 3.521126 ACTCTCATTACAACCAGCCTCAT 59.479 43.478 0.00 0.00 0.00 2.90
89 90 4.716784 ACTCTCATTACAACCAGCCTCATA 59.283 41.667 0.00 0.00 0.00 2.15
90 91 5.367937 ACTCTCATTACAACCAGCCTCATAT 59.632 40.000 0.00 0.00 0.00 1.78
91 92 5.614308 TCTCATTACAACCAGCCTCATATG 58.386 41.667 0.00 0.00 0.00 1.78
92 93 4.136796 TCATTACAACCAGCCTCATATGC 58.863 43.478 0.00 0.00 0.00 3.14
93 94 3.643199 TTACAACCAGCCTCATATGCA 57.357 42.857 0.00 0.00 0.00 3.96
94 95 2.742428 ACAACCAGCCTCATATGCAT 57.258 45.000 3.79 3.79 0.00 3.96
95 96 2.304092 ACAACCAGCCTCATATGCATG 58.696 47.619 10.16 0.00 0.00 4.06
96 97 1.000607 CAACCAGCCTCATATGCATGC 60.001 52.381 11.82 11.82 31.73 4.06
114 115 4.563374 GCATGCCCCTTTTAATTGTCAACT 60.563 41.667 6.36 0.00 0.00 3.16
115 116 4.599047 TGCCCCTTTTAATTGTCAACTG 57.401 40.909 0.00 0.00 0.00 3.16
116 117 3.964031 TGCCCCTTTTAATTGTCAACTGT 59.036 39.130 0.00 0.00 0.00 3.55
161 163 1.030457 ACTAATCTCCGCGAACCGAT 58.970 50.000 8.23 0.12 40.02 4.18
164 166 0.174845 AATCTCCGCGAACCGATCAA 59.825 50.000 8.23 0.00 40.02 2.57
202 204 2.414957 GGTCGTTGGATTTTTAAGCCGG 60.415 50.000 0.00 0.00 40.70 6.13
382 418 4.202577 GGGGATCCTTCTAATTTTCCCGAT 60.203 45.833 12.58 0.00 43.13 4.18
390 426 7.391275 TCCTTCTAATTTTCCCGATAAAACGTT 59.609 33.333 0.00 0.00 31.50 3.99
394 430 8.566260 TCTAATTTTCCCGATAAAACGTTTGAA 58.434 29.630 15.46 9.54 31.50 2.69
395 431 9.349145 CTAATTTTCCCGATAAAACGTTTGAAT 57.651 29.630 15.46 11.37 31.50 2.57
423 461 8.419076 TTTCAAAATTGCTCTTTGTCTTTACC 57.581 30.769 5.89 0.00 35.65 2.85
427 465 6.959639 AATTGCTCTTTGTCTTTACCAGAA 57.040 33.333 0.00 0.00 31.28 3.02
486 524 4.923871 AGCTCGGATTTGTATATGCGTAAG 59.076 41.667 0.00 0.00 39.87 2.34
488 526 5.176958 GCTCGGATTTGTATATGCGTAAGTT 59.823 40.000 0.00 0.00 39.87 2.66
536 575 2.881389 CGCAGTCGGCTCTCTCTT 59.119 61.111 0.00 0.00 41.67 2.85
539 578 0.459411 GCAGTCGGCTCTCTCTTTCC 60.459 60.000 0.00 0.00 40.25 3.13
541 580 1.134175 CAGTCGGCTCTCTCTTTCCTC 59.866 57.143 0.00 0.00 0.00 3.71
542 581 0.099791 GTCGGCTCTCTCTTTCCTCG 59.900 60.000 0.00 0.00 0.00 4.63
543 582 1.032657 TCGGCTCTCTCTTTCCTCGG 61.033 60.000 0.00 0.00 0.00 4.63
544 583 1.142965 GGCTCTCTCTTTCCTCGGC 59.857 63.158 0.00 0.00 0.00 5.54
588 638 4.347453 GCAGTGCAAACCCGGCTG 62.347 66.667 11.09 0.00 0.00 4.85
589 639 4.347453 CAGTGCAAACCCGGCTGC 62.347 66.667 12.93 12.93 39.09 5.25
642 694 4.767255 CTCGCCTCGCCTTGCCTT 62.767 66.667 0.00 0.00 0.00 4.35
643 695 4.329545 TCGCCTCGCCTTGCCTTT 62.330 61.111 0.00 0.00 0.00 3.11
644 696 4.107051 CGCCTCGCCTTGCCTTTG 62.107 66.667 0.00 0.00 0.00 2.77
646 698 3.752339 CCTCGCCTTGCCTTTGCC 61.752 66.667 0.00 0.00 36.33 4.52
647 699 3.752339 CTCGCCTTGCCTTTGCCC 61.752 66.667 0.00 0.00 36.33 5.36
648 700 4.284550 TCGCCTTGCCTTTGCCCT 62.285 61.111 0.00 0.00 36.33 5.19
649 701 4.060038 CGCCTTGCCTTTGCCCTG 62.060 66.667 0.00 0.00 36.33 4.45
650 702 4.383861 GCCTTGCCTTTGCCCTGC 62.384 66.667 0.00 0.00 36.33 4.85
651 703 3.698820 CCTTGCCTTTGCCCTGCC 61.699 66.667 0.00 0.00 36.33 4.85
652 704 3.698820 CTTGCCTTTGCCCTGCCC 61.699 66.667 0.00 0.00 36.33 5.36
682 734 1.296715 CGGGTTGACCTCTTCCCTG 59.703 63.158 0.00 0.00 37.92 4.45
684 736 1.376037 GGTTGACCTCTTCCCTGCG 60.376 63.158 0.00 0.00 0.00 5.18
686 738 2.217038 TTGACCTCTTCCCTGCGCT 61.217 57.895 9.73 0.00 0.00 5.92
711 763 1.741770 CGTCGGGGAAGAAGCAAGG 60.742 63.158 0.00 0.00 0.00 3.61
717 772 2.346541 GGAAGAAGCAAGGCAGGCC 61.347 63.158 0.97 0.97 0.00 5.19
735 790 3.977244 GCTGGCGTTGGGTTGGTG 61.977 66.667 0.00 0.00 0.00 4.17
811 866 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
813 868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
815 870 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
816 871 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
817 872 3.041946 GAGAGAGAGAGAGAGAGAGGGT 58.958 54.545 0.00 0.00 0.00 4.34
818 873 4.078571 AGAGAGAGAGAGAGAGAGAGGGTA 60.079 50.000 0.00 0.00 0.00 3.69
819 874 3.967987 AGAGAGAGAGAGAGAGAGGGTAC 59.032 52.174 0.00 0.00 0.00 3.34
822 877 2.169769 AGAGAGAGAGAGAGGGTACGTG 59.830 54.545 0.00 0.00 0.00 4.49
823 878 2.168936 GAGAGAGAGAGAGGGTACGTGA 59.831 54.545 0.00 0.00 0.00 4.35
824 879 2.169769 AGAGAGAGAGAGGGTACGTGAG 59.830 54.545 0.00 0.00 0.00 3.51
838 893 2.599281 TGAGCCTCCGACGACCAA 60.599 61.111 0.00 0.00 0.00 3.67
839 894 2.182030 GAGCCTCCGACGACCAAG 59.818 66.667 0.00 0.00 0.00 3.61
840 895 2.282958 AGCCTCCGACGACCAAGA 60.283 61.111 0.00 0.00 0.00 3.02
842 897 2.885861 CCTCCGACGACCAAGAGG 59.114 66.667 0.00 0.00 40.00 3.69
846 904 2.202492 CGACGACCAAGAGGAGCG 60.202 66.667 0.00 0.00 40.32 5.03
859 917 1.799994 GAGGAGCGAGGTAGACGATAC 59.200 57.143 0.00 0.00 0.00 2.24
860 918 1.140452 AGGAGCGAGGTAGACGATACA 59.860 52.381 0.00 0.00 32.14 2.29
863 921 1.941294 AGCGAGGTAGACGATACACAG 59.059 52.381 0.00 0.00 0.00 3.66
937 999 4.069232 CGAGGCTCCGGCAAGTGA 62.069 66.667 9.32 0.00 40.87 3.41
967 1029 2.906897 CCCACCGTTGTTGCTGCT 60.907 61.111 0.00 0.00 0.00 4.24
1100 1162 1.517257 CGGACGATGGTCAGTCAGC 60.517 63.158 10.22 0.00 45.28 4.26
1102 1164 1.591703 GACGATGGTCAGTCAGCCA 59.408 57.895 2.59 0.00 42.91 4.75
1111 1173 2.284995 AGTCAGCCACTCCCCTCC 60.285 66.667 0.00 0.00 0.00 4.30
1112 1174 3.775654 GTCAGCCACTCCCCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
1141 1203 4.440839 AAAAGCTCCGTTCCATTTCATC 57.559 40.909 0.00 0.00 0.00 2.92
1143 1205 4.487714 AAGCTCCGTTCCATTTCATCTA 57.512 40.909 0.00 0.00 0.00 1.98
1148 1210 2.675844 CCGTTCCATTTCATCTAACGCA 59.324 45.455 0.00 0.00 41.04 5.24
1153 1215 5.282055 TCCATTTCATCTAACGCATCTCT 57.718 39.130 0.00 0.00 0.00 3.10
1156 1225 3.355626 TTCATCTAACGCATCTCTCCG 57.644 47.619 0.00 0.00 0.00 4.63
1160 1230 1.739338 CTAACGCATCTCTCCGCCCT 61.739 60.000 0.00 0.00 0.00 5.19
1164 1234 2.906458 CATCTCTCCGCCCTGCTT 59.094 61.111 0.00 0.00 0.00 3.91
1165 1235 1.222936 CATCTCTCCGCCCTGCTTT 59.777 57.895 0.00 0.00 0.00 3.51
1169 1239 3.130160 CTCCGCCCTGCTTTGCTC 61.130 66.667 0.00 0.00 0.00 4.26
1174 1244 2.338785 GCCCTGCTTTGCTCACCTC 61.339 63.158 0.00 0.00 0.00 3.85
1178 1248 0.514691 CTGCTTTGCTCACCTCGTTC 59.485 55.000 0.00 0.00 0.00 3.95
1179 1249 0.106708 TGCTTTGCTCACCTCGTTCT 59.893 50.000 0.00 0.00 0.00 3.01
1180 1250 0.514691 GCTTTGCTCACCTCGTTCTG 59.485 55.000 0.00 0.00 0.00 3.02
1181 1251 0.514691 CTTTGCTCACCTCGTTCTGC 59.485 55.000 0.00 0.00 0.00 4.26
1182 1252 0.179059 TTTGCTCACCTCGTTCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
1185 1255 1.364626 GCTCACCTCGTTCTGCATGG 61.365 60.000 0.00 0.00 0.00 3.66
1186 1256 0.247460 CTCACCTCGTTCTGCATGGA 59.753 55.000 0.00 0.00 0.00 3.41
1188 1258 1.278985 TCACCTCGTTCTGCATGGATT 59.721 47.619 0.00 0.00 0.00 3.01
1191 1261 1.399440 CCTCGTTCTGCATGGATTGTG 59.601 52.381 0.00 0.00 0.00 3.33
1193 1263 2.076100 TCGTTCTGCATGGATTGTGTC 58.924 47.619 0.00 0.00 0.00 3.67
1195 1265 3.056179 TCGTTCTGCATGGATTGTGTCTA 60.056 43.478 0.00 0.00 0.00 2.59
1196 1266 3.062639 CGTTCTGCATGGATTGTGTCTAC 59.937 47.826 0.00 0.00 0.00 2.59
1197 1267 4.256920 GTTCTGCATGGATTGTGTCTACT 58.743 43.478 0.00 0.00 0.00 2.57
1199 1269 3.515104 TCTGCATGGATTGTGTCTACTCA 59.485 43.478 0.00 0.00 0.00 3.41
1200 1270 4.162888 TCTGCATGGATTGTGTCTACTCAT 59.837 41.667 0.00 0.00 0.00 2.90
1261 1332 0.683504 ACTACCCGTCGAGCTGGAAT 60.684 55.000 0.00 0.00 0.00 3.01
1305 1376 1.524621 GGGACGGGATCATGTGCAG 60.525 63.158 9.63 0.00 0.00 4.41
1324 1395 3.948719 GGCAACGGGAGGGTGACA 61.949 66.667 0.00 0.00 0.00 3.58
1347 1423 2.535984 CGCTGTGAGTACAATCGAATCC 59.464 50.000 0.00 0.00 36.14 3.01
1418 1499 7.504911 CCTCATCTCATCATACCAAATTTCCTT 59.495 37.037 0.00 0.00 0.00 3.36
1524 1605 1.352156 CTGTAAGTTGTCGCCTCGCC 61.352 60.000 0.00 0.00 0.00 5.54
1550 1632 2.109799 ATGGATTCGCTGCCTCCG 59.890 61.111 0.00 0.00 31.36 4.63
1562 1644 3.207669 CCTCCGAGCTGCCATTGC 61.208 66.667 0.00 0.00 38.26 3.56
1626 1708 9.896645 TCTCAATTATGAACTCTGCTTTCTTAT 57.103 29.630 0.00 0.00 34.49 1.73
1637 1723 5.809001 TCTGCTTTCTTATTGTCTGACCAT 58.191 37.500 5.17 2.29 0.00 3.55
1652 1738 4.821805 TCTGACCATGTCCTGAAAGAAAAC 59.178 41.667 0.00 0.00 34.07 2.43
1654 1740 4.952957 TGACCATGTCCTGAAAGAAAACAA 59.047 37.500 0.00 0.00 34.07 2.83
1656 1742 6.071108 TGACCATGTCCTGAAAGAAAACAAAA 60.071 34.615 0.00 0.00 34.07 2.44
1700 1787 9.965824 CAAGTTTACCATGTCTAAGTTTTGATT 57.034 29.630 0.00 0.00 0.00 2.57
1789 1878 5.491982 TGAAGGAAAAGTAGAGATGCTTCC 58.508 41.667 0.00 0.00 38.86 3.46
1822 1911 7.943079 TTGCATGGAAGAAAATCTAGATGAA 57.057 32.000 5.86 0.00 0.00 2.57
1911 2000 1.940613 AGTGACCTTTCGTTCAACAGC 59.059 47.619 0.00 0.00 0.00 4.40
2007 2096 2.489722 GCTCATTGTTCTCAACCCTTCC 59.510 50.000 0.00 0.00 36.33 3.46
2071 2160 3.057806 TCGCTTTCGATGTACTTGTCAGA 60.058 43.478 0.00 0.00 40.21 3.27
2177 2266 6.433766 AGCTTGATTCAAAAGAAACTTCTCG 58.566 36.000 0.01 0.00 36.28 4.04
2213 2302 7.878127 ACTCCTCGTCTTATTTCTTTTGATTGA 59.122 33.333 0.00 0.00 0.00 2.57
2214 2303 8.029642 TCCTCGTCTTATTTCTTTTGATTGAC 57.970 34.615 0.00 0.00 0.00 3.18
2237 2329 6.677781 CAGAAAAACTAACTGGTTCTGTGA 57.322 37.500 0.00 0.00 40.08 3.58
2270 2362 3.769739 ACATATAGGGCGCTGAATTCA 57.230 42.857 14.51 8.12 0.00 2.57
2498 2601 5.506649 GCAACCGGTTGTTTCATCTTTCTAA 60.507 40.000 39.71 0.00 42.31 2.10
2499 2602 5.684550 ACCGGTTGTTTCATCTTTCTAAC 57.315 39.130 0.00 0.00 0.00 2.34
2500 2603 5.374071 ACCGGTTGTTTCATCTTTCTAACT 58.626 37.500 0.00 0.00 0.00 2.24
2501 2604 5.238650 ACCGGTTGTTTCATCTTTCTAACTG 59.761 40.000 0.00 0.00 0.00 3.16
2506 2609 9.052759 GGTTGTTTCATCTTTCTAACTGAACTA 57.947 33.333 0.00 0.00 33.88 2.24
2570 2673 1.338200 CGCTTACAGGCCTCTTCAAGT 60.338 52.381 0.00 0.00 0.00 3.16
2781 2886 5.280945 ACAATGAAACACACATTTTCCTCG 58.719 37.500 0.00 0.00 36.07 4.63
2909 3014 6.166982 ACCTAAATGAGCTGTAAGTGTCTTC 58.833 40.000 0.00 0.00 35.30 2.87
3119 3258 7.093902 ACAATCTCGGAAAATACTGACTAGTCA 60.094 37.037 23.80 23.80 38.36 3.41
3120 3259 6.829229 TCTCGGAAAATACTGACTAGTCAA 57.171 37.500 25.14 13.00 39.39 3.18
3302 3441 8.633561 TGATATTCTTGTTATCACTCAGATCGT 58.366 33.333 0.00 0.00 38.19 3.73
3316 3455 0.642800 GATCGTTGTCTTCTGCGAGC 59.357 55.000 0.00 0.00 36.79 5.03
3446 3586 6.551385 AGTCATTCTCATGTTCAAGTGTTC 57.449 37.500 0.00 0.00 0.00 3.18
3488 3628 6.039616 GTGTAATGAGCAAAAACCAGTTGAA 58.960 36.000 0.00 0.00 0.00 2.69
3786 3926 2.624838 GCACTAGCATGGCCAAATGTAT 59.375 45.455 10.96 0.13 41.58 2.29
3968 4108 2.954753 CTGCGTGAAGGTGCGGTTC 61.955 63.158 0.00 0.00 32.78 3.62
4033 4173 0.314302 AAGTGAGTCTGTTCCCGTCG 59.686 55.000 0.00 0.00 0.00 5.12
4105 4245 1.298859 GCAACCAGACCTACAAGCCG 61.299 60.000 0.00 0.00 0.00 5.52
4156 4296 2.373169 TGCAGATCCATATGTCCCCTTC 59.627 50.000 1.24 0.00 0.00 3.46
4157 4297 2.641815 GCAGATCCATATGTCCCCTTCT 59.358 50.000 1.24 0.00 0.00 2.85
4204 4344 8.550376 GTTTAAAATTGAAGATTTGAAGCAGCA 58.450 29.630 0.00 0.00 0.00 4.41
4277 4417 5.612865 CAAGAAATCGAAGTTCAGTACAGC 58.387 41.667 13.02 0.00 0.00 4.40
4320 4460 0.251165 CCGGTGGGGTTCTTGTGATT 60.251 55.000 0.00 0.00 0.00 2.57
4341 4481 1.549203 CCCTCATTTTGGTGGGACTG 58.451 55.000 0.00 0.00 42.11 3.51
4492 4635 3.189080 TGCGATGAACTGAACATCCAAAG 59.811 43.478 0.00 0.00 40.40 2.77
4717 4861 4.320608 AACAATTGAAAACCGCATCAGT 57.679 36.364 13.59 0.00 0.00 3.41
4724 4868 4.297510 TGAAAACCGCATCAGTTCATTTG 58.702 39.130 0.00 0.00 0.00 2.32
4743 4887 8.827832 TCATTTGTCCATCTTATTCCTGAAAT 57.172 30.769 0.00 0.00 0.00 2.17
4744 4888 9.919416 TCATTTGTCCATCTTATTCCTGAAATA 57.081 29.630 0.00 0.00 0.00 1.40
4747 4891 8.696043 TTGTCCATCTTATTCCTGAAATATGG 57.304 34.615 0.00 0.00 32.29 2.74
4748 4892 6.716628 TGTCCATCTTATTCCTGAAATATGGC 59.283 38.462 0.00 0.00 31.59 4.40
4749 4893 6.151817 GTCCATCTTATTCCTGAAATATGGCC 59.848 42.308 0.00 0.00 31.59 5.36
4750 4894 6.045931 TCCATCTTATTCCTGAAATATGGCCT 59.954 38.462 3.32 0.00 31.59 5.19
4751 4895 6.152323 CCATCTTATTCCTGAAATATGGCCTG 59.848 42.308 3.32 0.00 29.96 4.85
4752 4896 5.072741 TCTTATTCCTGAAATATGGCCTGC 58.927 41.667 3.32 0.00 29.96 4.85
4753 4897 2.824689 TTCCTGAAATATGGCCTGCA 57.175 45.000 3.32 0.00 0.00 4.41
4754 4898 2.057137 TCCTGAAATATGGCCTGCAC 57.943 50.000 3.32 0.00 0.00 4.57
4755 4899 1.284491 TCCTGAAATATGGCCTGCACA 59.716 47.619 3.32 0.00 0.00 4.57
4756 4900 2.101783 CCTGAAATATGGCCTGCACAA 58.898 47.619 3.32 0.00 0.00 3.33
4757 4901 2.496871 CCTGAAATATGGCCTGCACAAA 59.503 45.455 3.32 0.00 0.00 2.83
4758 4902 3.514645 CTGAAATATGGCCTGCACAAAC 58.485 45.455 3.32 0.00 0.00 2.93
4759 4903 2.896044 TGAAATATGGCCTGCACAAACA 59.104 40.909 3.32 0.00 0.00 2.83
4760 4904 3.056678 TGAAATATGGCCTGCACAAACAG 60.057 43.478 3.32 0.00 37.42 3.16
4761 4905 2.220653 ATATGGCCTGCACAAACAGT 57.779 45.000 3.32 0.00 35.83 3.55
4762 4906 1.993956 TATGGCCTGCACAAACAGTT 58.006 45.000 3.32 0.00 35.83 3.16
4763 4907 0.390124 ATGGCCTGCACAAACAGTTG 59.610 50.000 3.32 0.00 40.84 3.16
4764 4908 0.682532 TGGCCTGCACAAACAGTTGA 60.683 50.000 3.32 0.00 38.20 3.18
4765 4909 0.459489 GGCCTGCACAAACAGTTGAA 59.541 50.000 0.00 0.00 38.20 2.69
4773 4917 5.292765 TGCACAAACAGTTGAAAGTTGAAA 58.707 33.333 0.00 0.00 38.20 2.69
4790 4934 5.105146 AGTTGAAACACAATTTAGCCAACCA 60.105 36.000 0.00 0.00 40.76 3.67
4809 4953 0.758734 ACACTGGCTTACTCACTGCA 59.241 50.000 0.00 0.00 0.00 4.41
4816 4960 2.095567 GGCTTACTCACTGCAATGTGTG 60.096 50.000 12.70 9.41 38.90 3.82
4819 4963 4.776743 CTTACTCACTGCAATGTGTGAAC 58.223 43.478 12.70 0.00 41.80 3.18
4839 4983 2.508300 ACAGGTGTACAAGGGAACACTT 59.492 45.455 0.00 0.00 44.32 3.16
4878 5022 1.521681 GATAAAGCGGGCGCAGTCT 60.522 57.895 10.83 0.00 44.88 3.24
5076 5220 2.943036 TTACTGAGTCCCAAACCACC 57.057 50.000 0.00 0.00 0.00 4.61
5088 5232 2.489985 CCAAACCACCCCACTGACAATA 60.490 50.000 0.00 0.00 0.00 1.90
5094 5238 0.546598 CCCCACTGACAATACCCCTC 59.453 60.000 0.00 0.00 0.00 4.30
5405 5549 2.649331 AGGAACACTGGTAACGATCG 57.351 50.000 14.88 14.88 42.51 3.69
5443 5587 0.532573 TCACCTCGATCAGTTGCTCC 59.467 55.000 0.00 0.00 0.00 4.70
5602 5746 1.068250 GCCGATCGAGAAGGGGAAG 59.932 63.158 18.66 0.00 0.00 3.46
5608 5752 1.915141 TCGAGAAGGGGAAGTACGTT 58.085 50.000 0.00 0.00 0.00 3.99
5983 6127 0.895530 CCTACTTCGAGGTCAAGCCA 59.104 55.000 2.32 0.00 40.61 4.75
5995 6142 5.584649 CGAGGTCAAGCCAAAATAATAGACA 59.415 40.000 0.00 0.00 40.61 3.41
6055 6224 1.040646 TGTTCCTTCTCGTGTCAGCT 58.959 50.000 0.00 0.00 0.00 4.24
6056 6225 1.412710 TGTTCCTTCTCGTGTCAGCTT 59.587 47.619 0.00 0.00 0.00 3.74
6057 6226 1.795286 GTTCCTTCTCGTGTCAGCTTG 59.205 52.381 0.00 0.00 0.00 4.01
6058 6227 1.040646 TCCTTCTCGTGTCAGCTTGT 58.959 50.000 0.00 0.00 0.00 3.16
6059 6228 1.143305 CCTTCTCGTGTCAGCTTGTG 58.857 55.000 0.00 0.00 0.00 3.33
6060 6229 1.269778 CCTTCTCGTGTCAGCTTGTGA 60.270 52.381 0.00 0.00 0.00 3.58
6061 6230 2.057316 CTTCTCGTGTCAGCTTGTGAG 58.943 52.381 0.00 0.00 35.13 3.51
6135 6307 5.043248 TGTGACTTGTGATGCATCGTATAG 58.957 41.667 21.34 16.63 0.00 1.31
6136 6308 5.043903 GTGACTTGTGATGCATCGTATAGT 58.956 41.667 21.34 19.32 0.00 2.12
6137 6309 6.183360 TGTGACTTGTGATGCATCGTATAGTA 60.183 38.462 21.34 3.76 0.00 1.82
6168 6340 7.246311 AGATTCTTCTTTGTTCATTGTATGCG 58.754 34.615 0.00 0.00 0.00 4.73
6194 6366 6.206243 AGTTTCACTCTCTTGACATTCATTGG 59.794 38.462 0.00 0.00 0.00 3.16
6262 6464 4.383118 CCAAACAGGATTACTCGGAGTCAT 60.383 45.833 15.05 9.40 41.22 3.06
6270 6472 1.360551 CTCGGAGTCATGGCCTACG 59.639 63.158 3.32 10.59 37.62 3.51
6273 6475 2.962253 GAGTCATGGCCTACGCGC 60.962 66.667 5.73 0.00 35.02 6.86
6291 6493 1.242076 GCCTTTGATGTGCACTCAGT 58.758 50.000 19.41 1.13 0.00 3.41
6292 6494 2.426522 GCCTTTGATGTGCACTCAGTA 58.573 47.619 19.41 9.78 0.00 2.74
6294 6496 2.744202 CCTTTGATGTGCACTCAGTACC 59.256 50.000 19.41 0.06 31.00 3.34
6295 6497 2.472695 TTGATGTGCACTCAGTACCC 57.527 50.000 19.41 0.00 31.00 3.69
6296 6498 1.644509 TGATGTGCACTCAGTACCCT 58.355 50.000 19.41 0.00 31.00 4.34
6297 6499 2.815158 TGATGTGCACTCAGTACCCTA 58.185 47.619 19.41 0.00 31.00 3.53
6349 6619 7.892778 TTCATTAATTGTCGTAGCAGTACAA 57.107 32.000 0.00 0.00 37.51 2.41
6355 6625 6.854496 ATTGTCGTAGCAGTACAAAAAGAA 57.146 33.333 0.00 0.00 36.75 2.52
6378 6648 9.981114 AGAACATCAAAAGTAATAAAAAGGGTG 57.019 29.630 0.00 0.00 0.00 4.61
6392 6662 6.451064 AAAAAGGGTGTGTTTAGAACTCAG 57.549 37.500 0.00 0.00 35.77 3.35
6427 6697 4.442375 AACGAAGTCTCAATCGAGTGAT 57.558 40.909 16.83 0.54 45.00 3.06
6448 6718 2.942376 TGTCAGCTTAGTTGTGGTGTTG 59.058 45.455 0.00 0.00 33.89 3.33
6453 6723 2.731217 CTTAGTTGTGGTGTTGCAAGC 58.269 47.619 0.00 0.00 0.00 4.01
6475 6745 0.464036 CATGGCTGGATGCTGCAAAT 59.536 50.000 17.41 7.86 42.39 2.32
6526 6796 4.496341 GCAAGCAACGACAACATATGCTAT 60.496 41.667 1.58 0.00 45.95 2.97
6528 6798 6.714492 CAAGCAACGACAACATATGCTATAA 58.286 36.000 1.58 0.00 45.95 0.98
6551 6821 6.190954 ACCGTTCTGATAAAAATGCTAACC 57.809 37.500 0.00 0.00 0.00 2.85
6552 6822 5.163794 ACCGTTCTGATAAAAATGCTAACCG 60.164 40.000 0.00 0.00 0.00 4.44
6553 6823 5.163794 CCGTTCTGATAAAAATGCTAACCGT 60.164 40.000 0.00 0.00 0.00 4.83
6554 6824 6.036300 CCGTTCTGATAAAAATGCTAACCGTA 59.964 38.462 0.00 0.00 0.00 4.02
6593 6865 2.418609 CCCGTGAGATGATGTGCTACAA 60.419 50.000 0.00 0.00 0.00 2.41
6608 6880 2.798680 CTACAATTGACGAGGGACGAG 58.201 52.381 13.59 0.00 45.77 4.18
6621 6893 1.641577 GGACGAGATGCTACAACCAC 58.358 55.000 0.00 0.00 0.00 4.16
6627 6899 3.674997 GAGATGCTACAACCACCAAGAA 58.325 45.455 0.00 0.00 0.00 2.52
6637 6909 1.145738 ACCACCAAGAAGGATGTTGCT 59.854 47.619 0.00 0.00 41.22 3.91
6638 6910 2.375174 ACCACCAAGAAGGATGTTGCTA 59.625 45.455 0.00 0.00 41.22 3.49
6639 6911 2.749621 CCACCAAGAAGGATGTTGCTAC 59.250 50.000 0.00 0.00 41.22 3.58
6640 6912 2.749621 CACCAAGAAGGATGTTGCTACC 59.250 50.000 0.00 0.00 41.22 3.18
6641 6913 2.009774 CCAAGAAGGATGTTGCTACCG 58.990 52.381 0.00 0.00 41.22 4.02
6642 6914 2.009774 CAAGAAGGATGTTGCTACCGG 58.990 52.381 0.00 0.00 0.00 5.28
6643 6915 0.107654 AGAAGGATGTTGCTACCGGC 60.108 55.000 0.00 0.00 42.22 6.13
6692 6964 2.472695 AAATGCTGCAAGGTCGACTA 57.527 45.000 16.46 0.00 0.00 2.59
6704 6976 5.455392 CAAGGTCGACTAAGACTTCGTTAA 58.545 41.667 16.46 0.00 40.76 2.01
6753 7025 9.528018 CAAGCCCGTAATAAAAATTACATTCAT 57.472 29.630 8.52 0.00 36.96 2.57
6835 7107 4.887071 CGGAATCAAACCCAAATAGGATGA 59.113 41.667 0.00 0.00 41.22 2.92
6845 7117 7.510549 ACCCAAATAGGATGATACATTTTCG 57.489 36.000 0.00 0.00 41.22 3.46
6852 7124 3.059597 GGATGATACATTTTCGAGGCGTG 60.060 47.826 0.00 0.00 0.00 5.34
6965 7238 9.653287 AACAGAAGACGATTGATCAATTAACTA 57.347 29.630 21.57 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.207928 TGCTGTGACACACAAATAATTGAAG 58.792 36.000 3.56 0.00 44.08 3.02
3 4 6.141560 TGCTGTGACACACAAATAATTGAA 57.858 33.333 3.56 0.00 44.08 2.69
4 5 5.764487 TGCTGTGACACACAAATAATTGA 57.236 34.783 3.56 0.00 44.08 2.57
5 6 6.384224 AGATGCTGTGACACACAAATAATTG 58.616 36.000 3.56 0.00 44.08 2.32
6 7 6.579666 AGATGCTGTGACACACAAATAATT 57.420 33.333 3.56 0.00 44.08 1.40
7 8 7.686438 TTAGATGCTGTGACACACAAATAAT 57.314 32.000 3.56 0.00 44.08 1.28
8 9 7.503521 TTTAGATGCTGTGACACACAAATAA 57.496 32.000 3.56 8.58 44.08 1.40
10 11 6.039717 ACTTTTAGATGCTGTGACACACAAAT 59.960 34.615 3.56 0.00 44.08 2.32
11 12 5.356751 ACTTTTAGATGCTGTGACACACAAA 59.643 36.000 3.56 0.00 44.08 2.83
12 13 4.881273 ACTTTTAGATGCTGTGACACACAA 59.119 37.500 3.56 0.00 44.08 3.33
13 14 4.450976 ACTTTTAGATGCTGTGACACACA 58.549 39.130 3.56 8.59 42.45 3.72
14 15 4.752101 AGACTTTTAGATGCTGTGACACAC 59.248 41.667 3.56 2.84 34.56 3.82
15 16 4.960938 AGACTTTTAGATGCTGTGACACA 58.039 39.130 8.26 8.26 0.00 3.72
16 17 6.159988 ACTAGACTTTTAGATGCTGTGACAC 58.840 40.000 0.00 0.00 0.00 3.67
17 18 6.346477 ACTAGACTTTTAGATGCTGTGACA 57.654 37.500 0.00 0.00 0.00 3.58
18 19 6.868864 TCAACTAGACTTTTAGATGCTGTGAC 59.131 38.462 0.00 0.00 0.00 3.67
19 20 6.868864 GTCAACTAGACTTTTAGATGCTGTGA 59.131 38.462 0.00 0.00 44.09 3.58
20 21 7.054855 GTCAACTAGACTTTTAGATGCTGTG 57.945 40.000 0.00 0.00 44.09 3.66
35 36 7.588497 AGCAGTATCATACATGTCAACTAGA 57.412 36.000 0.00 0.00 0.00 2.43
36 37 9.920133 ATAAGCAGTATCATACATGTCAACTAG 57.080 33.333 0.00 0.00 0.00 2.57
37 38 9.696917 CATAAGCAGTATCATACATGTCAACTA 57.303 33.333 0.00 0.00 0.00 2.24
38 39 8.424133 TCATAAGCAGTATCATACATGTCAACT 58.576 33.333 0.00 0.00 0.00 3.16
39 40 8.593492 TCATAAGCAGTATCATACATGTCAAC 57.407 34.615 0.00 0.00 0.00 3.18
41 42 9.860898 GTATCATAAGCAGTATCATACATGTCA 57.139 33.333 0.00 0.00 29.06 3.58
46 47 9.520515 TGAGAGTATCATAAGCAGTATCATACA 57.479 33.333 0.00 0.00 37.82 2.29
62 63 4.716784 AGGCTGGTTGTAATGAGAGTATCA 59.283 41.667 0.00 0.00 43.70 2.15
63 64 5.163405 TGAGGCTGGTTGTAATGAGAGTATC 60.163 44.000 0.00 0.00 0.00 2.24
64 65 4.716784 TGAGGCTGGTTGTAATGAGAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
65 66 4.093743 TGAGGCTGGTTGTAATGAGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
66 67 2.906389 TGAGGCTGGTTGTAATGAGAGT 59.094 45.455 0.00 0.00 0.00 3.24
67 68 3.616956 TGAGGCTGGTTGTAATGAGAG 57.383 47.619 0.00 0.00 0.00 3.20
68 69 5.614308 CATATGAGGCTGGTTGTAATGAGA 58.386 41.667 0.00 0.00 0.00 3.27
69 70 4.214971 GCATATGAGGCTGGTTGTAATGAG 59.785 45.833 6.97 0.00 0.00 2.90
70 71 4.136796 GCATATGAGGCTGGTTGTAATGA 58.863 43.478 6.97 0.00 0.00 2.57
71 72 3.884693 TGCATATGAGGCTGGTTGTAATG 59.115 43.478 6.97 0.00 0.00 1.90
72 73 4.169059 TGCATATGAGGCTGGTTGTAAT 57.831 40.909 6.97 0.00 0.00 1.89
73 74 3.643199 TGCATATGAGGCTGGTTGTAA 57.357 42.857 6.97 0.00 0.00 2.41
74 75 3.479489 CATGCATATGAGGCTGGTTGTA 58.521 45.455 6.97 0.00 36.36 2.41
75 76 2.304092 CATGCATATGAGGCTGGTTGT 58.696 47.619 6.97 0.00 36.36 3.32
76 77 1.000607 GCATGCATATGAGGCTGGTTG 60.001 52.381 14.21 0.00 36.36 3.77
77 78 1.325355 GCATGCATATGAGGCTGGTT 58.675 50.000 14.21 0.00 36.36 3.67
78 79 0.538977 GGCATGCATATGAGGCTGGT 60.539 55.000 21.36 0.00 36.36 4.00
79 80 1.248785 GGGCATGCATATGAGGCTGG 61.249 60.000 21.36 0.00 36.36 4.85
80 81 1.248785 GGGGCATGCATATGAGGCTG 61.249 60.000 21.36 0.00 36.36 4.85
81 82 1.076192 GGGGCATGCATATGAGGCT 59.924 57.895 21.36 0.00 36.36 4.58
82 83 0.541296 AAGGGGCATGCATATGAGGC 60.541 55.000 21.36 7.52 36.36 4.70
83 84 2.005370 AAAGGGGCATGCATATGAGG 57.995 50.000 21.36 0.00 36.36 3.86
84 85 5.733620 ATTAAAAGGGGCATGCATATGAG 57.266 39.130 21.36 0.00 36.36 2.90
85 86 5.366186 ACAATTAAAAGGGGCATGCATATGA 59.634 36.000 21.36 0.00 36.36 2.15
86 87 5.613329 ACAATTAAAAGGGGCATGCATATG 58.387 37.500 21.36 0.00 37.36 1.78
87 88 5.366186 TGACAATTAAAAGGGGCATGCATAT 59.634 36.000 21.36 0.31 0.00 1.78
88 89 4.713814 TGACAATTAAAAGGGGCATGCATA 59.286 37.500 21.36 0.00 0.00 3.14
89 90 3.518705 TGACAATTAAAAGGGGCATGCAT 59.481 39.130 21.36 1.15 0.00 3.96
90 91 2.902486 TGACAATTAAAAGGGGCATGCA 59.098 40.909 21.36 0.00 0.00 3.96
91 92 3.608316 TGACAATTAAAAGGGGCATGC 57.392 42.857 9.90 9.90 0.00 4.06
92 93 4.931002 CAGTTGACAATTAAAAGGGGCATG 59.069 41.667 0.00 0.00 0.00 4.06
93 94 4.592778 ACAGTTGACAATTAAAAGGGGCAT 59.407 37.500 0.00 0.00 0.00 4.40
94 95 3.964031 ACAGTTGACAATTAAAAGGGGCA 59.036 39.130 0.00 0.00 0.00 5.36
95 96 4.556233 GACAGTTGACAATTAAAAGGGGC 58.444 43.478 0.00 0.00 0.00 5.80
96 97 4.832823 AGGACAGTTGACAATTAAAAGGGG 59.167 41.667 0.00 0.00 0.00 4.79
161 163 1.536766 CAGCCTTTGATTGCGTCTTGA 59.463 47.619 0.00 0.00 0.00 3.02
164 166 0.250901 ACCAGCCTTTGATTGCGTCT 60.251 50.000 0.00 0.00 0.00 4.18
328 358 2.270205 CTGCTGGTGGCCTGTAGG 59.730 66.667 3.32 0.00 40.92 3.18
329 359 2.270205 CCTGCTGGTGGCCTGTAG 59.730 66.667 3.32 0.00 40.92 2.74
330 360 2.529136 ACCTGCTGGTGGCCTGTA 60.529 61.111 15.36 0.00 46.51 2.74
405 443 5.241728 GGTTCTGGTAAAGACAAAGAGCAAT 59.758 40.000 0.00 0.00 33.46 3.56
412 450 2.487625 CCCCGGTTCTGGTAAAGACAAA 60.488 50.000 0.00 0.00 33.46 2.83
437 475 5.659048 ATATTCAAATCCTCGACGAAAGC 57.341 39.130 0.00 0.00 0.00 3.51
539 578 2.830704 AAACTAACCGAGCGGCCGAG 62.831 60.000 33.48 18.26 39.32 4.63
541 580 2.433664 AAACTAACCGAGCGGCCG 60.434 61.111 24.05 24.05 39.32 6.13
542 581 1.375013 TCAAACTAACCGAGCGGCC 60.375 57.895 9.14 0.00 39.32 6.13
543 582 1.632948 GGTCAAACTAACCGAGCGGC 61.633 60.000 9.14 0.00 39.32 6.53
544 583 0.320073 TGGTCAAACTAACCGAGCGG 60.320 55.000 7.48 7.48 39.81 5.52
587 637 1.581934 CGTTCAGACAAGACAAGGCA 58.418 50.000 0.00 0.00 0.00 4.75
588 638 0.235926 GCGTTCAGACAAGACAAGGC 59.764 55.000 0.00 0.00 0.00 4.35
589 639 0.508641 CGCGTTCAGACAAGACAAGG 59.491 55.000 0.00 0.00 0.00 3.61
590 640 1.071239 CACGCGTTCAGACAAGACAAG 60.071 52.381 10.22 0.00 0.00 3.16
591 641 0.927537 CACGCGTTCAGACAAGACAA 59.072 50.000 10.22 0.00 0.00 3.18
664 716 1.296715 CAGGGAAGAGGTCAACCCG 59.703 63.158 0.00 0.00 46.13 5.28
735 790 0.953960 CGGCAGGGCGTATAAATCCC 60.954 60.000 7.12 0.00 40.36 3.85
811 866 1.380112 GGAGGCTCACGTACCCTCT 60.380 63.158 17.69 3.54 43.66 3.69
813 868 2.754658 CGGAGGCTCACGTACCCT 60.755 66.667 17.69 0.91 0.00 4.34
815 870 2.488820 GTCGGAGGCTCACGTACC 59.511 66.667 17.69 0.00 0.00 3.34
816 871 2.099831 CGTCGGAGGCTCACGTAC 59.900 66.667 17.69 14.48 0.00 3.67
817 872 2.046988 TCGTCGGAGGCTCACGTA 60.047 61.111 21.88 10.06 35.05 3.57
818 873 3.735029 GTCGTCGGAGGCTCACGT 61.735 66.667 21.88 0.00 35.05 4.49
819 874 4.477975 GGTCGTCGGAGGCTCACG 62.478 72.222 17.69 18.00 34.78 4.35
822 877 2.182030 CTTGGTCGTCGGAGGCTC 59.818 66.667 5.78 5.78 0.00 4.70
823 878 2.282958 TCTTGGTCGTCGGAGGCT 60.283 61.111 0.00 0.00 0.00 4.58
824 879 2.182030 CTCTTGGTCGTCGGAGGC 59.818 66.667 0.00 0.00 0.00 4.70
826 881 1.803943 CTCCTCTTGGTCGTCGGAG 59.196 63.158 0.00 0.00 35.75 4.63
827 882 2.341101 GCTCCTCTTGGTCGTCGGA 61.341 63.158 0.00 0.00 34.23 4.55
838 893 0.470766 ATCGTCTACCTCGCTCCTCT 59.529 55.000 0.00 0.00 0.00 3.69
839 894 1.799994 GTATCGTCTACCTCGCTCCTC 59.200 57.143 0.00 0.00 0.00 3.71
840 895 1.140452 TGTATCGTCTACCTCGCTCCT 59.860 52.381 0.00 0.00 0.00 3.69
842 897 1.938577 TGTGTATCGTCTACCTCGCTC 59.061 52.381 0.00 0.00 0.00 5.03
846 904 2.032722 CGCTCTGTGTATCGTCTACCTC 60.033 54.545 0.00 0.00 0.00 3.85
937 999 4.148825 GTGGGCGCCTGACTCGAT 62.149 66.667 28.56 0.00 0.00 3.59
1111 1173 2.561373 GGAGCTTTTTGGACGGCG 59.439 61.111 4.80 4.80 0.00 6.46
1112 1174 1.792118 AACGGAGCTTTTTGGACGGC 61.792 55.000 0.00 0.00 0.00 5.68
1115 1177 1.314730 TGGAACGGAGCTTTTTGGAC 58.685 50.000 0.00 0.00 0.00 4.02
1141 1203 1.300233 GGGCGGAGAGATGCGTTAG 60.300 63.158 0.00 0.00 0.00 2.34
1143 1205 3.077556 AGGGCGGAGAGATGCGTT 61.078 61.111 0.00 0.00 0.00 4.84
1148 1210 1.222936 CAAAGCAGGGCGGAGAGAT 59.777 57.895 0.00 0.00 0.00 2.75
1153 1215 3.952508 TGAGCAAAGCAGGGCGGA 61.953 61.111 0.00 0.00 34.54 5.54
1156 1225 2.282745 AGGTGAGCAAAGCAGGGC 60.283 61.111 0.00 0.00 0.00 5.19
1160 1230 0.106708 AGAACGAGGTGAGCAAAGCA 59.893 50.000 0.00 0.00 0.00 3.91
1164 1234 0.035317 ATGCAGAACGAGGTGAGCAA 59.965 50.000 0.00 0.00 35.45 3.91
1165 1235 0.671472 CATGCAGAACGAGGTGAGCA 60.671 55.000 0.00 0.00 36.34 4.26
1169 1239 1.399440 CAATCCATGCAGAACGAGGTG 59.601 52.381 0.00 0.00 0.00 4.00
1174 1244 2.079158 AGACACAATCCATGCAGAACG 58.921 47.619 0.00 0.00 0.00 3.95
1178 1248 3.865446 TGAGTAGACACAATCCATGCAG 58.135 45.455 0.00 0.00 0.00 4.41
1179 1249 3.979101 TGAGTAGACACAATCCATGCA 57.021 42.857 0.00 0.00 0.00 3.96
1180 1250 3.562973 CCATGAGTAGACACAATCCATGC 59.437 47.826 0.00 0.00 31.37 4.06
1181 1251 3.562973 GCCATGAGTAGACACAATCCATG 59.437 47.826 0.00 0.00 0.00 3.66
1182 1252 3.200605 TGCCATGAGTAGACACAATCCAT 59.799 43.478 0.00 0.00 0.00 3.41
1185 1255 2.611292 GCTGCCATGAGTAGACACAATC 59.389 50.000 0.00 0.00 0.00 2.67
1186 1256 2.636830 GCTGCCATGAGTAGACACAAT 58.363 47.619 0.00 0.00 0.00 2.71
1188 1258 0.250234 GGCTGCCATGAGTAGACACA 59.750 55.000 15.17 0.00 35.96 3.72
1191 1261 1.884926 GCGGCTGCCATGAGTAGAC 60.885 63.158 20.29 0.00 31.61 2.59
1193 1263 2.963854 CGCGGCTGCCATGAGTAG 60.964 66.667 20.29 0.93 38.08 2.57
1239 1310 1.153823 CAGCTCGACGGGTAGTTGG 60.154 63.158 0.00 0.00 34.93 3.77
1321 1392 2.531912 CGATTGTACTCACAGCGATGTC 59.468 50.000 1.77 0.00 36.79 3.06
1324 1395 3.503827 TTCGATTGTACTCACAGCGAT 57.496 42.857 0.00 0.00 40.54 4.58
1371 1452 2.560504 CACACACTTGACTTGGCTGTA 58.439 47.619 0.00 0.00 0.00 2.74
1377 1458 1.667236 TGAGGCACACACTTGACTTG 58.333 50.000 0.00 0.00 33.74 3.16
1378 1459 2.105477 AGATGAGGCACACACTTGACTT 59.895 45.455 0.00 0.00 33.74 3.01
1379 1460 1.696336 AGATGAGGCACACACTTGACT 59.304 47.619 0.00 0.00 37.66 3.41
1380 1461 2.072298 GAGATGAGGCACACACTTGAC 58.928 52.381 0.00 0.00 0.00 3.18
1381 1462 1.693606 TGAGATGAGGCACACACTTGA 59.306 47.619 0.00 0.00 0.00 3.02
1418 1499 0.526524 CGCCTGCGAAAACAAACCAA 60.527 50.000 5.43 0.00 42.83 3.67
1449 1530 4.424566 GCGTGCCCTGCATGTTGG 62.425 66.667 9.76 0.00 46.10 3.77
1524 1605 2.901840 CGAATCCATGGTGGGCGG 60.902 66.667 12.58 0.00 38.32 6.13
1536 1618 2.964389 GCTCGGAGGCAGCGAATC 60.964 66.667 7.20 0.00 0.00 2.52
1538 1620 4.441695 CAGCTCGGAGGCAGCGAA 62.442 66.667 7.20 0.00 42.14 4.70
1562 1644 5.028549 ACTGGTTCAACATATAGCCTGAG 57.971 43.478 0.00 0.00 0.00 3.35
1572 1654 2.105477 ACTGCTCTGACTGGTTCAACAT 59.895 45.455 0.00 0.00 32.21 2.71
1573 1655 1.486310 ACTGCTCTGACTGGTTCAACA 59.514 47.619 0.00 0.00 32.21 3.33
1574 1656 2.246719 ACTGCTCTGACTGGTTCAAC 57.753 50.000 0.00 0.00 32.21 3.18
1626 1708 3.390967 TCTTTCAGGACATGGTCAGACAA 59.609 43.478 2.17 0.00 33.68 3.18
1627 1709 2.972021 TCTTTCAGGACATGGTCAGACA 59.028 45.455 2.17 0.00 33.68 3.41
1654 1740 3.565307 TGAATGGGTCAGCTCAGTTTTT 58.435 40.909 0.00 0.00 0.00 1.94
1656 1742 2.957402 TGAATGGGTCAGCTCAGTTT 57.043 45.000 0.00 0.00 0.00 2.66
1822 1911 7.672239 AGGTCTTCAGAACTTCTACATCTAGTT 59.328 37.037 0.00 0.00 39.48 2.24
1833 1922 1.803555 GCAGCAGGTCTTCAGAACTTC 59.196 52.381 0.00 0.00 39.48 3.01
1911 2000 0.381089 GGATCGTACCACTGAGACCG 59.619 60.000 0.00 0.00 0.00 4.79
2007 2096 2.996444 TGCTATTGCATCAGGAGCG 58.004 52.632 0.00 0.00 45.31 5.03
2062 2151 2.107204 ACCAGCCAAGATTCTGACAAGT 59.893 45.455 0.00 0.00 32.26 3.16
2104 2193 3.518303 GGAGGTTGCCTAGTTCTTTAGGA 59.482 47.826 3.33 0.00 42.39 2.94
2177 2266 0.095417 GACGAGGAGTTTGCGAATGC 59.905 55.000 0.00 0.00 43.20 3.56
2214 2303 6.677781 TCACAGAACCAGTTAGTTTTTCTG 57.322 37.500 7.86 7.86 45.72 3.02
2237 2329 6.976925 GCGCCCTATATGTATAGATAACGTTT 59.023 38.462 5.91 0.00 38.30 3.60
2270 2362 1.178276 TTGTGCCCGTCAACTTGTTT 58.822 45.000 0.00 0.00 0.00 2.83
2455 2547 4.214986 TGCAAACCGATGATCTTCCTTA 57.785 40.909 3.19 0.00 0.00 2.69
2498 2601 4.836825 CTGTCCACCAATCATAGTTCAGT 58.163 43.478 0.00 0.00 0.00 3.41
2499 2602 3.624861 GCTGTCCACCAATCATAGTTCAG 59.375 47.826 0.00 0.00 0.00 3.02
2500 2603 3.609853 GCTGTCCACCAATCATAGTTCA 58.390 45.455 0.00 0.00 0.00 3.18
2501 2604 2.945668 GGCTGTCCACCAATCATAGTTC 59.054 50.000 0.00 0.00 0.00 3.01
2506 2609 2.537633 AATGGCTGTCCACCAATCAT 57.462 45.000 0.00 0.00 46.92 2.45
2570 2673 7.855784 ACATGTGTATGAGGGTCATATTAGA 57.144 36.000 0.00 0.00 40.97 2.10
2781 2886 9.950680 TCAAAGATTGTGATAAAAACAACTCTC 57.049 29.630 0.00 0.00 40.16 3.20
2946 3085 7.315890 GCAGAAAGCATTTTCAGTAATAGGTT 58.684 34.615 1.77 0.00 44.14 3.50
3119 3258 8.204160 GCTTAAATCCCTGGTTATTAAAGCATT 58.796 33.333 10.26 0.00 41.95 3.56
3120 3259 7.344352 TGCTTAAATCCCTGGTTATTAAAGCAT 59.656 33.333 12.59 0.00 41.95 3.79
3226 3365 3.390135 TGTTGCTTTAGAGAGTCAACCG 58.610 45.455 0.00 0.00 35.10 4.44
3302 3441 0.319900 GTGAGGCTCGCAGAAGACAA 60.320 55.000 22.55 0.00 34.09 3.18
3417 3557 9.552114 CACTTGAACATGAGAATGACTTATTTC 57.448 33.333 0.00 0.00 0.00 2.17
3440 3580 5.972935 TGTACCATCATCAATACGAACACT 58.027 37.500 0.00 0.00 0.00 3.55
3446 3586 7.651704 TCATTACACTGTACCATCATCAATACG 59.348 37.037 0.00 0.00 0.00 3.06
3488 3628 1.404391 CTGGCATCGTAAGTACTCCGT 59.596 52.381 12.83 0.00 39.48 4.69
3669 3809 2.418628 GCAAGCCTGTACGCAGATTTTA 59.581 45.455 0.00 0.00 45.28 1.52
3679 3819 1.383523 GATTCAGGGCAAGCCTGTAC 58.616 55.000 11.40 0.00 36.73 2.90
3968 4108 2.496070 TGAAGTGGATACGGTTCAGGAG 59.504 50.000 0.00 0.00 36.34 3.69
4033 4173 1.737008 GTTGAAGAGCGTCCCCGTC 60.737 63.158 0.00 0.00 36.15 4.79
4156 4296 4.286291 ACAGGGGAAACTCAAGTACCTAAG 59.714 45.833 0.00 0.00 0.00 2.18
4157 4297 4.237018 ACAGGGGAAACTCAAGTACCTAA 58.763 43.478 0.00 0.00 0.00 2.69
4204 4344 2.561478 AGTTAGTTTCACACCGCCAT 57.439 45.000 0.00 0.00 0.00 4.40
4277 4417 1.136147 GCGATTCCAGCAACAGCAG 59.864 57.895 0.00 0.00 34.19 4.24
4320 4460 0.541764 GTCCCACCAAAATGAGGGCA 60.542 55.000 0.00 0.00 41.22 5.36
4514 4657 6.998968 ATGATCAGATCAGTTTCAACCTTC 57.001 37.500 18.13 0.00 43.53 3.46
4717 4861 8.648698 TTTCAGGAATAAGATGGACAAATGAA 57.351 30.769 0.00 0.00 0.00 2.57
4724 4868 6.151817 GGCCATATTTCAGGAATAAGATGGAC 59.848 42.308 11.46 5.76 35.02 4.02
4743 4887 1.612950 CAACTGTTTGTGCAGGCCATA 59.387 47.619 5.01 0.00 40.59 2.74
4744 4888 0.390124 CAACTGTTTGTGCAGGCCAT 59.610 50.000 5.01 0.00 40.59 4.40
4745 4889 0.682532 TCAACTGTTTGTGCAGGCCA 60.683 50.000 5.01 0.00 40.59 5.36
4746 4890 0.459489 TTCAACTGTTTGTGCAGGCC 59.541 50.000 0.00 0.00 40.59 5.19
4747 4891 2.195922 CTTTCAACTGTTTGTGCAGGC 58.804 47.619 0.00 0.00 40.59 4.85
4748 4892 3.508744 ACTTTCAACTGTTTGTGCAGG 57.491 42.857 0.00 0.00 40.59 4.85
4749 4893 4.484236 TCAACTTTCAACTGTTTGTGCAG 58.516 39.130 0.00 0.00 41.92 4.41
4750 4894 4.511617 TCAACTTTCAACTGTTTGTGCA 57.488 36.364 0.00 0.00 34.02 4.57
4751 4895 5.176590 TGTTTCAACTTTCAACTGTTTGTGC 59.823 36.000 0.00 0.00 34.02 4.57
4752 4896 6.199908 TGTGTTTCAACTTTCAACTGTTTGTG 59.800 34.615 0.00 0.00 34.02 3.33
4753 4897 6.276847 TGTGTTTCAACTTTCAACTGTTTGT 58.723 32.000 0.00 0.00 34.02 2.83
4754 4898 6.761731 TGTGTTTCAACTTTCAACTGTTTG 57.238 33.333 0.00 0.00 0.00 2.93
4755 4899 7.961325 ATTGTGTTTCAACTTTCAACTGTTT 57.039 28.000 0.00 0.00 38.97 2.83
4756 4900 7.961325 AATTGTGTTTCAACTTTCAACTGTT 57.039 28.000 0.00 0.00 38.97 3.16
4757 4901 7.961325 AAATTGTGTTTCAACTTTCAACTGT 57.039 28.000 0.00 0.00 38.97 3.55
4758 4902 8.110002 GCTAAATTGTGTTTCAACTTTCAACTG 58.890 33.333 0.00 0.00 38.97 3.16
4759 4903 7.277760 GGCTAAATTGTGTTTCAACTTTCAACT 59.722 33.333 0.00 0.00 38.97 3.16
4760 4904 7.064016 TGGCTAAATTGTGTTTCAACTTTCAAC 59.936 33.333 0.00 0.00 38.97 3.18
4761 4905 7.099764 TGGCTAAATTGTGTTTCAACTTTCAA 58.900 30.769 0.00 0.00 38.97 2.69
4762 4906 6.634805 TGGCTAAATTGTGTTTCAACTTTCA 58.365 32.000 0.00 0.00 38.97 2.69
4763 4907 7.398746 GTTGGCTAAATTGTGTTTCAACTTTC 58.601 34.615 0.00 0.00 38.97 2.62
4764 4908 6.315144 GGTTGGCTAAATTGTGTTTCAACTTT 59.685 34.615 0.00 0.00 38.97 2.66
4765 4909 5.815222 GGTTGGCTAAATTGTGTTTCAACTT 59.185 36.000 0.00 0.00 38.97 2.66
4773 4917 3.068024 CAGTGTGGTTGGCTAAATTGTGT 59.932 43.478 0.00 0.00 0.00 3.72
4790 4934 0.758734 TGCAGTGAGTAAGCCAGTGT 59.241 50.000 0.00 0.00 37.31 3.55
4809 4953 3.882888 CCTTGTACACCTGTTCACACATT 59.117 43.478 0.00 0.00 30.39 2.71
4816 4960 2.876550 GTGTTCCCTTGTACACCTGTTC 59.123 50.000 0.00 0.00 36.94 3.18
4819 4963 2.878406 CAAGTGTTCCCTTGTACACCTG 59.122 50.000 0.00 0.00 42.01 4.00
4839 4983 1.592743 CACCCGTATTCCGTCCACA 59.407 57.895 0.00 0.00 33.66 4.17
5022 5166 1.421646 CCAACAAGGTTCTCCCTCAGT 59.578 52.381 0.00 0.00 45.47 3.41
5076 5220 1.285280 TGAGGGGTATTGTCAGTGGG 58.715 55.000 0.00 0.00 0.00 4.61
5088 5232 3.959495 ATGCAAATGTAGATGAGGGGT 57.041 42.857 0.00 0.00 0.00 4.95
5094 5238 9.289303 GGTAAACAACTAATGCAAATGTAGATG 57.711 33.333 0.00 0.00 0.00 2.90
5405 5549 5.240844 AGGTGAAAAATGTAGCAGTGGTTAC 59.759 40.000 0.00 0.00 0.00 2.50
5443 5587 6.427974 GCATGATTAATCGGCAGATCATATG 58.572 40.000 20.73 11.72 37.18 1.78
5602 5746 2.025418 CACCTCCCGCACAACGTAC 61.025 63.158 0.00 0.00 41.42 3.67
5827 5971 4.097361 GCCGAGTTGGACCCCTCC 62.097 72.222 0.00 0.00 42.00 4.30
5944 6088 1.222115 GCATGTAATCGGACGCCTCC 61.222 60.000 0.00 0.00 0.00 4.30
5947 6091 2.251642 GGGCATGTAATCGGACGCC 61.252 63.158 0.00 0.00 38.85 5.68
5995 6142 6.432403 ACCCCAAAAATGAATGTACAATGT 57.568 33.333 0.00 0.00 0.00 2.71
6013 6160 7.463431 ACAAAATGTACACTTTCTATACCCCA 58.537 34.615 0.00 0.00 0.00 4.96
6055 6224 4.574421 ACAATTCATCGTCACAACTCACAA 59.426 37.500 0.00 0.00 0.00 3.33
6056 6225 4.126437 ACAATTCATCGTCACAACTCACA 58.874 39.130 0.00 0.00 0.00 3.58
6057 6226 4.732285 ACAATTCATCGTCACAACTCAC 57.268 40.909 0.00 0.00 0.00 3.51
6058 6227 5.293560 TGTACAATTCATCGTCACAACTCA 58.706 37.500 0.00 0.00 0.00 3.41
6059 6228 5.839262 TGTACAATTCATCGTCACAACTC 57.161 39.130 0.00 0.00 0.00 3.01
6060 6229 6.426633 TCAATGTACAATTCATCGTCACAACT 59.573 34.615 0.00 0.00 0.00 3.16
6061 6230 6.598525 TCAATGTACAATTCATCGTCACAAC 58.401 36.000 0.00 0.00 0.00 3.32
6093 6265 1.790043 CATCACTCGCAACACGTACAA 59.210 47.619 0.00 0.00 44.19 2.41
6094 6266 1.269361 ACATCACTCGCAACACGTACA 60.269 47.619 0.00 0.00 44.19 2.90
6194 6366 7.148755 GGACAATGTAAACAATGAACTTGCATC 60.149 37.037 5.21 0.00 38.50 3.91
6246 6448 1.270358 GGCCATGACTCCGAGTAATCC 60.270 57.143 0.00 0.00 0.00 3.01
6270 6472 1.154150 GAGTGCACATCAAAGGCGC 60.154 57.895 21.04 0.00 38.28 6.53
6273 6475 2.744202 GGTACTGAGTGCACATCAAAGG 59.256 50.000 21.04 10.25 0.00 3.11
6303 6505 8.797350 TGAATAGATCAGAAGATTTTTCTGCA 57.203 30.769 11.17 2.90 44.08 4.41
6355 6625 8.700973 ACACACCCTTTTTATTACTTTTGATGT 58.299 29.630 0.00 0.00 0.00 3.06
6392 6662 4.144534 ACTTCGTTAAGTCTCAGTCGAC 57.855 45.455 7.70 7.70 42.42 4.20
6427 6697 2.942376 CAACACCACAACTAAGCTGACA 59.058 45.455 0.00 0.00 0.00 3.58
6468 6738 3.680937 ACATTTTTCATCGCCATTTGCAG 59.319 39.130 0.00 0.00 41.33 4.41
6475 6745 2.799412 GTTGCAACATTTTTCATCGCCA 59.201 40.909 24.52 0.00 0.00 5.69
6526 6796 7.413219 CGGTTAGCATTTTTATCAGAACGGTTA 60.413 37.037 0.00 0.00 0.00 2.85
6528 6798 5.163794 CGGTTAGCATTTTTATCAGAACGGT 60.164 40.000 0.00 0.00 0.00 4.83
6549 6819 2.223971 CGCAACATCCTCCTTATACGGT 60.224 50.000 0.00 0.00 0.00 4.83
6550 6820 2.035449 TCGCAACATCCTCCTTATACGG 59.965 50.000 0.00 0.00 0.00 4.02
6551 6821 3.050619 GTCGCAACATCCTCCTTATACG 58.949 50.000 0.00 0.00 0.00 3.06
6552 6822 3.391049 GGTCGCAACATCCTCCTTATAC 58.609 50.000 0.00 0.00 0.00 1.47
6553 6823 2.367567 GGGTCGCAACATCCTCCTTATA 59.632 50.000 0.00 0.00 0.00 0.98
6554 6824 1.141053 GGGTCGCAACATCCTCCTTAT 59.859 52.381 0.00 0.00 0.00 1.73
6593 6865 0.103208 GCATCTCGTCCCTCGTCAAT 59.897 55.000 0.00 0.00 40.80 2.57
6608 6880 2.749621 CCTTCTTGGTGGTTGTAGCATC 59.250 50.000 0.00 0.00 0.00 3.91
6621 6893 2.009774 CGGTAGCAACATCCTTCTTGG 58.990 52.381 0.00 0.00 37.10 3.61
6649 6921 6.130298 TGTCTCATCGTTCACAACATTTTT 57.870 33.333 0.00 0.00 0.00 1.94
6650 6922 5.749596 TGTCTCATCGTTCACAACATTTT 57.250 34.783 0.00 0.00 0.00 1.82
6651 6923 5.749596 TTGTCTCATCGTTCACAACATTT 57.250 34.783 0.00 0.00 0.00 2.32
6652 6924 5.749596 TTTGTCTCATCGTTCACAACATT 57.250 34.783 0.00 0.00 0.00 2.71
6653 6925 5.749596 TTTTGTCTCATCGTTCACAACAT 57.250 34.783 0.00 0.00 0.00 2.71
6654 6926 5.509771 CATTTTGTCTCATCGTTCACAACA 58.490 37.500 0.00 0.00 0.00 3.33
6655 6927 4.379793 GCATTTTGTCTCATCGTTCACAAC 59.620 41.667 0.00 0.00 0.00 3.32
6656 6928 4.275689 AGCATTTTGTCTCATCGTTCACAA 59.724 37.500 0.00 0.00 0.00 3.33
6657 6929 3.814842 AGCATTTTGTCTCATCGTTCACA 59.185 39.130 0.00 0.00 0.00 3.58
6658 6930 4.153986 CAGCATTTTGTCTCATCGTTCAC 58.846 43.478 0.00 0.00 0.00 3.18
6659 6931 3.365264 GCAGCATTTTGTCTCATCGTTCA 60.365 43.478 0.00 0.00 0.00 3.18
6660 6932 3.166657 GCAGCATTTTGTCTCATCGTTC 58.833 45.455 0.00 0.00 0.00 3.95
6692 6964 5.857517 GTCGACTGAGATTTAACGAAGTCTT 59.142 40.000 8.70 0.00 45.00 3.01
6720 6992 8.474006 AATTTTTATTACGGGCTTGCTAAAAG 57.526 30.769 0.00 0.00 0.00 2.27
6753 7025 7.547722 ACGCTGAGTGTTTATTTATATGTCACA 59.452 33.333 0.00 0.00 0.00 3.58
6835 7107 3.520290 TCTCACGCCTCGAAAATGTAT 57.480 42.857 0.00 0.00 0.00 2.29
6845 7117 3.531538 TCCAAAATGTATCTCACGCCTC 58.468 45.455 0.00 0.00 0.00 4.70
6905 7177 9.396022 TGAAAGAGACAAATCTTTTACTTCTGT 57.604 29.630 3.45 0.00 46.84 3.41
6963 7236 4.565022 ACGGTTGCCCAATTTTTCATTAG 58.435 39.130 0.00 0.00 0.00 1.73
6965 7238 3.483808 ACGGTTGCCCAATTTTTCATT 57.516 38.095 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.