Multiple sequence alignment - TraesCS1A01G303700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G303700 chr1A 100.000 1852 0 0 764 2615 497225905 497224054 0.000000e+00 3421.0
1 TraesCS1A01G303700 chr1A 100.000 308 0 0 1 308 497226668 497226361 1.050000e-158 569.0
2 TraesCS1A01G303700 chr1A 89.179 268 16 4 2348 2615 431945450 431945196 3.250000e-84 322.0
3 TraesCS1A01G303700 chr1A 82.759 348 27 13 2297 2615 398673406 398673063 1.980000e-71 279.0
4 TraesCS1A01G303700 chr1A 92.593 135 10 0 2301 2435 372202783 372202917 7.380000e-46 195.0
5 TraesCS1A01G303700 chr1A 87.730 163 11 4 2303 2461 431945552 431945395 5.750000e-42 182.0
6 TraesCS1A01G303700 chr1A 93.651 63 3 1 2292 2353 178685297 178685235 2.770000e-15 93.5
7 TraesCS1A01G303700 chr4A 93.715 1082 57 7 764 1843 25201820 25202892 0.000000e+00 1611.0
8 TraesCS1A01G303700 chr4A 96.393 305 11 0 1 305 25201487 25201791 1.080000e-138 503.0
9 TraesCS1A01G303700 chr4A 86.538 260 24 5 2356 2615 589823215 589822967 2.560000e-70 276.0
10 TraesCS1A01G303700 chr4A 80.381 367 34 18 2277 2615 735038657 735038301 7.230000e-61 244.0
11 TraesCS1A01G303700 chrUn 93.234 1079 66 5 764 1841 47720677 47719605 0.000000e+00 1581.0
12 TraesCS1A01G303700 chrUn 92.864 1079 69 6 764 1841 289580270 289581341 0.000000e+00 1559.0
13 TraesCS1A01G303700 chrUn 97.403 308 8 0 1 308 47721010 47720703 2.310000e-145 525.0
14 TraesCS1A01G303700 chrUn 96.429 308 11 0 1 308 289579937 289580244 2.320000e-140 508.0
15 TraesCS1A01G303700 chr7A 93.688 903 52 4 764 1665 709871484 709872382 0.000000e+00 1347.0
16 TraesCS1A01G303700 chr7A 79.579 1092 185 32 764 1838 522256626 522257696 0.000000e+00 747.0
17 TraesCS1A01G303700 chr7A 96.753 308 10 0 1 308 709871151 709871458 4.990000e-142 514.0
18 TraesCS1A01G303700 chr7A 90.837 251 18 4 2365 2615 662978841 662979086 5.390000e-87 331.0
19 TraesCS1A01G303700 chr7A 88.166 169 16 3 2296 2461 662978740 662978907 5.710000e-47 198.0
20 TraesCS1A01G303700 chr7A 88.387 155 14 3 1687 1841 709872375 709872525 1.600000e-42 183.0
21 TraesCS1A01G303700 chr3D 81.810 1094 164 30 764 1842 515699713 515698640 0.000000e+00 885.0
22 TraesCS1A01G303700 chr3D 81.752 1096 164 31 764 1842 546580996 546579920 0.000000e+00 883.0
23 TraesCS1A01G303700 chr3D 86.885 305 40 0 2 306 546581328 546581024 2.490000e-90 342.0
24 TraesCS1A01G303700 chr3D 78.841 345 35 24 2266 2608 46939604 46939296 5.710000e-47 198.0
25 TraesCS1A01G303700 chr3D 83.486 218 28 7 2084 2297 430387361 430387148 2.050000e-46 196.0
26 TraesCS1A01G303700 chr3D 83.575 207 25 8 2094 2297 209699505 209699305 4.440000e-43 185.0
27 TraesCS1A01G303700 chr7D 81.279 1095 169 31 764 1842 532956709 532957783 0.000000e+00 854.0
28 TraesCS1A01G303700 chr7D 86.601 306 38 3 2 306 532956378 532956681 4.170000e-88 335.0
29 TraesCS1A01G303700 chr7D 79.111 225 30 12 2080 2298 168566795 168566582 3.510000e-29 139.0
30 TraesCS1A01G303700 chr3A 88.050 318 20 7 2299 2615 561087814 561087514 6.880000e-96 361.0
31 TraesCS1A01G303700 chr1D 91.288 264 19 2 2353 2615 250135363 250135623 8.900000e-95 357.0
32 TraesCS1A01G303700 chr1D 77.811 338 46 21 1981 2296 71614136 71613806 5.750000e-42 182.0
33 TraesCS1A01G303700 chr4B 89.668 271 19 6 2348 2615 640000788 640000524 1.160000e-88 337.0
34 TraesCS1A01G303700 chr4B 89.024 164 15 2 2301 2461 640000866 640000703 1.590000e-47 200.0
35 TraesCS1A01G303700 chr2A 84.971 346 24 11 2288 2615 705922781 705923116 2.510000e-85 326.0
36 TraesCS1A01G303700 chr2A 94.944 178 8 1 2438 2615 256812597 256812421 7.130000e-71 278.0
37 TraesCS1A01G303700 chr2A 91.176 68 5 1 2286 2353 122048606 122048540 9.970000e-15 91.6
38 TraesCS1A01G303700 chr7B 86.131 274 24 8 2356 2615 104249677 104249950 1.530000e-72 283.0
39 TraesCS1A01G303700 chr7B 83.854 192 23 8 2112 2297 133871510 133871321 2.670000e-40 176.0
40 TraesCS1A01G303700 chr7B 81.614 223 30 9 2080 2297 2575358 2575574 9.620000e-40 174.0
41 TraesCS1A01G303700 chr5B 91.000 200 18 0 2416 2615 591147651 591147850 1.190000e-68 270.0
42 TraesCS1A01G303700 chr5B 82.000 150 11 4 2299 2435 712870804 712870658 2.130000e-21 113.0
43 TraesCS1A01G303700 chr5A 88.889 216 23 1 2400 2615 511898327 511898113 5.550000e-67 265.0
44 TraesCS1A01G303700 chr5A 78.904 365 34 19 2289 2615 90611973 90612332 9.490000e-50 207.0
45 TraesCS1A01G303700 chr5A 78.684 380 30 26 2278 2615 648897916 648898286 3.410000e-49 206.0
46 TraesCS1A01G303700 chr5A 77.352 287 33 19 1854 2119 28111501 28111226 9.760000e-30 141.0
47 TraesCS1A01G303700 chr2D 78.522 433 65 20 1870 2289 417633830 417634247 2.580000e-65 259.0
48 TraesCS1A01G303700 chr4D 84.000 225 28 7 2080 2300 43611516 43611736 2.640000e-50 209.0
49 TraesCS1A01G303700 chr5D 80.723 249 31 8 1927 2162 40098177 40097933 7.440000e-41 178.0
50 TraesCS1A01G303700 chr6A 80.412 194 25 10 2110 2297 525263944 525263758 4.540000e-28 135.0
51 TraesCS1A01G303700 chr6A 77.540 187 19 16 2281 2461 598866638 598866469 9.970000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G303700 chr1A 497224054 497226668 2614 True 1995.000000 3421 100.000000 1 2615 2 chr1A.!!$R4 2614
1 TraesCS1A01G303700 chr4A 25201487 25202892 1405 False 1057.000000 1611 95.054000 1 1843 2 chr4A.!!$F1 1842
2 TraesCS1A01G303700 chrUn 47719605 47721010 1405 True 1053.000000 1581 95.318500 1 1841 2 chrUn.!!$R1 1840
3 TraesCS1A01G303700 chrUn 289579937 289581341 1404 False 1033.500000 1559 94.646500 1 1841 2 chrUn.!!$F1 1840
4 TraesCS1A01G303700 chr7A 522256626 522257696 1070 False 747.000000 747 79.579000 764 1838 1 chr7A.!!$F1 1074
5 TraesCS1A01G303700 chr7A 709871151 709872525 1374 False 681.333333 1347 92.942667 1 1841 3 chr7A.!!$F3 1840
6 TraesCS1A01G303700 chr3D 515698640 515699713 1073 True 885.000000 885 81.810000 764 1842 1 chr3D.!!$R4 1078
7 TraesCS1A01G303700 chr3D 546579920 546581328 1408 True 612.500000 883 84.318500 2 1842 2 chr3D.!!$R5 1840
8 TraesCS1A01G303700 chr7D 532956378 532957783 1405 False 594.500000 854 83.940000 2 1842 2 chr7D.!!$F1 1840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.813610 CAACAACAGACGGAGCACCA 60.814 55.0 0.0 0.0 35.59 4.17 F
1127 1134 0.254462 TTTGCTGTGAGACACCCACA 59.746 50.0 0.0 0.0 41.68 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1167 0.251634 TGCATGTATGGAGCGGTGAA 59.748 50.0 0.0 0.0 0.0 3.18 R
2359 2371 0.105039 CGGGAAAGGAAGGAGATCGG 59.895 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.871396 ATCATCAAGTATACAGTCCGGTT 57.129 39.130 0.00 0.00 0.00 4.44
107 108 3.365472 ACCTTTGCCAAAAACAGAGACT 58.635 40.909 0.00 0.00 0.00 3.24
255 256 0.813610 CAACAACAGACGGAGCACCA 60.814 55.000 0.00 0.00 35.59 4.17
857 858 5.065859 CCTGGACGCAACACATCAATTATTA 59.934 40.000 0.00 0.00 0.00 0.98
866 868 7.467267 GCAACACATCAATTATTATGTCGACCT 60.467 37.037 14.12 5.73 34.12 3.85
880 886 4.883083 TGTCGACCTTCCATATTCATAGC 58.117 43.478 14.12 0.00 0.00 2.97
1126 1133 0.947244 CTTTGCTGTGAGACACCCAC 59.053 55.000 0.00 0.00 32.73 4.61
1127 1134 0.254462 TTTGCTGTGAGACACCCACA 59.746 50.000 0.00 0.00 41.68 4.17
1159 1167 7.818997 TGTCCACTCGAATAGAACTGTATAT 57.181 36.000 0.00 0.00 0.00 0.86
1208 1216 8.398665 CCCATTTTACTAGAGCTAACACATTTC 58.601 37.037 0.00 0.00 0.00 2.17
1255 1263 1.714899 CCAACGCCGATCCATTGACC 61.715 60.000 0.00 0.00 0.00 4.02
1342 1350 6.903883 ATGGTACGACACTTATGAAATCAC 57.096 37.500 0.00 0.00 0.00 3.06
1347 1355 8.928733 GGTACGACACTTATGAAATCACTTTTA 58.071 33.333 0.00 0.00 0.00 1.52
1443 1453 3.259374 CAGACGGATGGGCTGTATATCTT 59.741 47.826 0.00 0.00 35.85 2.40
1454 1464 8.621532 TGGGCTGTATATCTTTTTGATATGAC 57.378 34.615 8.04 4.45 45.22 3.06
1628 1638 0.108329 AACTAGGGACGCACATTCCG 60.108 55.000 0.00 0.00 33.43 4.30
1630 1640 2.644555 CTAGGGACGCACATTCCGGG 62.645 65.000 0.00 0.00 33.43 5.73
1691 1703 9.014297 CCTTTCCATTGTAGTCACTCTTATTTT 57.986 33.333 0.00 0.00 0.00 1.82
1696 1708 7.965107 CCATTGTAGTCACTCTTATTTTTCAGC 59.035 37.037 0.00 0.00 0.00 4.26
1703 1715 6.580416 GTCACTCTTATTTTTCAGCTTTGCTC 59.420 38.462 0.00 0.00 36.40 4.26
1705 1717 5.047731 ACTCTTATTTTTCAGCTTTGCTCCC 60.048 40.000 0.00 0.00 36.40 4.30
1710 1722 0.667993 TTCAGCTTTGCTCCCGTTTG 59.332 50.000 0.00 0.00 36.40 2.93
1714 1726 1.732917 CTTTGCTCCCGTTTGCACA 59.267 52.632 0.00 0.00 39.05 4.57
1737 1749 0.689623 ATTTTGATTGCCCGCCCAAA 59.310 45.000 0.00 0.00 0.00 3.28
1738 1750 0.689623 TTTTGATTGCCCGCCCAAAT 59.310 45.000 0.00 0.00 0.00 2.32
1750 1762 5.598830 TGCCCGCCCAAATTATATTTTTCTA 59.401 36.000 0.00 0.00 0.00 2.10
1796 1808 7.283354 GGTGCTACTTTCTTTGCTAGGAATTAT 59.717 37.037 0.00 0.00 0.00 1.28
1862 1874 9.634163 ACTTTGAAATGTTAAACTTTTCTTCGT 57.366 25.926 12.60 6.12 40.67 3.85
1866 1878 9.849166 TGAAATGTTAAACTTTTCTTCGTTTCT 57.151 25.926 12.60 0.00 40.67 2.52
1907 1919 6.518208 TTTTGGTTCTTTCTTTTCTTCGGA 57.482 33.333 0.00 0.00 0.00 4.55
1908 1920 6.709018 TTTGGTTCTTTCTTTTCTTCGGAT 57.291 33.333 0.00 0.00 0.00 4.18
1909 1921 6.709018 TTGGTTCTTTCTTTTCTTCGGATT 57.291 33.333 0.00 0.00 0.00 3.01
1910 1922 7.811117 TTGGTTCTTTCTTTTCTTCGGATTA 57.189 32.000 0.00 0.00 0.00 1.75
1911 1923 7.811117 TGGTTCTTTCTTTTCTTCGGATTAA 57.189 32.000 0.00 0.00 0.00 1.40
1912 1924 8.404107 TGGTTCTTTCTTTTCTTCGGATTAAT 57.596 30.769 0.00 0.00 0.00 1.40
1913 1925 8.856103 TGGTTCTTTCTTTTCTTCGGATTAATT 58.144 29.630 0.00 0.00 0.00 1.40
1914 1926 9.692749 GGTTCTTTCTTTTCTTCGGATTAATTT 57.307 29.630 0.00 0.00 0.00 1.82
1919 1931 9.908152 TTTCTTTTCTTCGGATTAATTTTCTCC 57.092 29.630 0.00 0.00 0.00 3.71
1920 1932 8.863872 TCTTTTCTTCGGATTAATTTTCTCCT 57.136 30.769 0.00 0.00 0.00 3.69
1921 1933 9.297037 TCTTTTCTTCGGATTAATTTTCTCCTT 57.703 29.630 0.00 0.00 0.00 3.36
1922 1934 9.914131 CTTTTCTTCGGATTAATTTTCTCCTTT 57.086 29.630 0.00 0.00 0.00 3.11
1924 1936 9.908152 TTTCTTCGGATTAATTTTCTCCTTTTC 57.092 29.630 0.00 0.00 0.00 2.29
1925 1937 8.630054 TCTTCGGATTAATTTTCTCCTTTTCA 57.370 30.769 0.00 0.00 0.00 2.69
1926 1938 9.243105 TCTTCGGATTAATTTTCTCCTTTTCAT 57.757 29.630 0.00 0.00 0.00 2.57
1927 1939 9.860898 CTTCGGATTAATTTTCTCCTTTTCATT 57.139 29.630 0.00 0.00 0.00 2.57
1941 1953 9.942850 TCTCCTTTTCATTTTCTTTTGTTTTCT 57.057 25.926 0.00 0.00 0.00 2.52
1943 1955 9.942850 TCCTTTTCATTTTCTTTTGTTTTCTCT 57.057 25.926 0.00 0.00 0.00 3.10
1946 1958 9.824534 TTTTCATTTTCTTTTGTTTTCTCTTGC 57.175 25.926 0.00 0.00 0.00 4.01
1947 1959 8.545229 TTCATTTTCTTTTGTTTTCTCTTGCA 57.455 26.923 0.00 0.00 0.00 4.08
1948 1960 8.721019 TCATTTTCTTTTGTTTTCTCTTGCAT 57.279 26.923 0.00 0.00 0.00 3.96
1949 1961 9.165035 TCATTTTCTTTTGTTTTCTCTTGCATT 57.835 25.926 0.00 0.00 0.00 3.56
1950 1962 9.777575 CATTTTCTTTTGTTTTCTCTTGCATTT 57.222 25.926 0.00 0.00 0.00 2.32
1952 1964 9.824534 TTTTCTTTTGTTTTCTCTTGCATTTTC 57.175 25.926 0.00 0.00 0.00 2.29
1953 1965 8.545229 TTCTTTTGTTTTCTCTTGCATTTTCA 57.455 26.923 0.00 0.00 0.00 2.69
1954 1966 8.721019 TCTTTTGTTTTCTCTTGCATTTTCAT 57.279 26.923 0.00 0.00 0.00 2.57
1955 1967 9.165035 TCTTTTGTTTTCTCTTGCATTTTCATT 57.835 25.926 0.00 0.00 0.00 2.57
1956 1968 9.217223 CTTTTGTTTTCTCTTGCATTTTCATTG 57.783 29.630 0.00 0.00 0.00 2.82
1957 1969 7.846644 TTGTTTTCTCTTGCATTTTCATTGT 57.153 28.000 0.00 0.00 0.00 2.71
1958 1970 7.846644 TGTTTTCTCTTGCATTTTCATTGTT 57.153 28.000 0.00 0.00 0.00 2.83
1959 1971 8.266392 TGTTTTCTCTTGCATTTTCATTGTTT 57.734 26.923 0.00 0.00 0.00 2.83
1960 1972 8.728833 TGTTTTCTCTTGCATTTTCATTGTTTT 58.271 25.926 0.00 0.00 0.00 2.43
1961 1973 9.213819 GTTTTCTCTTGCATTTTCATTGTTTTC 57.786 29.630 0.00 0.00 0.00 2.29
1962 1974 8.721019 TTTCTCTTGCATTTTCATTGTTTTCT 57.279 26.923 0.00 0.00 0.00 2.52
1963 1975 9.814899 TTTCTCTTGCATTTTCATTGTTTTCTA 57.185 25.926 0.00 0.00 0.00 2.10
1964 1976 9.985730 TTCTCTTGCATTTTCATTGTTTTCTAT 57.014 25.926 0.00 0.00 0.00 1.98
2072 2084 8.918202 AGATGGTTAACATTCTTTAACAGACA 57.082 30.769 8.10 0.00 41.76 3.41
2073 2085 9.520515 AGATGGTTAACATTCTTTAACAGACAT 57.479 29.630 8.10 0.00 41.76 3.06
2081 2093 9.912634 AACATTCTTTAACAGACATTTACCATG 57.087 29.630 0.00 0.00 0.00 3.66
2082 2094 8.028938 ACATTCTTTAACAGACATTTACCATGC 58.971 33.333 0.00 0.00 0.00 4.06
2083 2095 7.759489 TTCTTTAACAGACATTTACCATGCT 57.241 32.000 0.00 0.00 0.00 3.79
2084 2096 7.759489 TCTTTAACAGACATTTACCATGCTT 57.241 32.000 0.00 0.00 0.00 3.91
2085 2097 7.592938 TCTTTAACAGACATTTACCATGCTTG 58.407 34.615 0.00 0.00 0.00 4.01
2086 2098 7.446931 TCTTTAACAGACATTTACCATGCTTGA 59.553 33.333 0.22 0.00 0.00 3.02
2087 2099 7.701539 TTAACAGACATTTACCATGCTTGAT 57.298 32.000 0.22 0.00 0.00 2.57
2088 2100 6.594788 AACAGACATTTACCATGCTTGATT 57.405 33.333 0.22 0.00 0.00 2.57
2089 2101 7.701539 AACAGACATTTACCATGCTTGATTA 57.298 32.000 0.22 0.00 0.00 1.75
2090 2102 7.701539 ACAGACATTTACCATGCTTGATTAA 57.298 32.000 0.22 0.00 0.00 1.40
2091 2103 8.121305 ACAGACATTTACCATGCTTGATTAAA 57.879 30.769 0.22 5.25 0.00 1.52
2092 2104 8.584157 ACAGACATTTACCATGCTTGATTAAAA 58.416 29.630 0.22 0.00 0.00 1.52
2093 2105 9.590451 CAGACATTTACCATGCTTGATTAAAAT 57.410 29.630 0.22 0.00 0.00 1.82
2134 2146 9.778741 TTAACAATTTTTAATACATGGGCAACA 57.221 25.926 0.00 0.00 39.74 3.33
2135 2147 8.860780 AACAATTTTTAATACATGGGCAACAT 57.139 26.923 0.00 0.00 41.57 2.71
2136 2148 8.860780 ACAATTTTTAATACATGGGCAACATT 57.139 26.923 0.00 0.00 37.84 2.71
2137 2149 9.294614 ACAATTTTTAATACATGGGCAACATTT 57.705 25.926 0.00 0.00 37.84 2.32
2227 2239 9.558396 AACATTTTTCAATACATGGTCAACATT 57.442 25.926 0.00 0.00 37.84 2.71
2228 2240 9.558396 ACATTTTTCAATACATGGTCAACATTT 57.442 25.926 0.00 0.00 37.84 2.32
2319 2331 9.562583 TTTTAATCGAAATATGTAAGTGGCAAC 57.437 29.630 0.00 0.00 0.00 4.17
2320 2332 5.751243 ATCGAAATATGTAAGTGGCAACC 57.249 39.130 0.00 0.00 0.00 3.77
2321 2333 3.619483 TCGAAATATGTAAGTGGCAACCG 59.381 43.478 0.00 0.00 0.00 4.44
2322 2334 3.372822 CGAAATATGTAAGTGGCAACCGT 59.627 43.478 0.00 0.00 0.00 4.83
2323 2335 4.658071 GAAATATGTAAGTGGCAACCGTG 58.342 43.478 0.00 0.00 0.00 4.94
2324 2336 2.843401 TATGTAAGTGGCAACCGTGT 57.157 45.000 0.00 0.00 0.00 4.49
2325 2337 1.234821 ATGTAAGTGGCAACCGTGTG 58.765 50.000 0.00 0.00 0.00 3.82
2326 2338 0.816018 TGTAAGTGGCAACCGTGTGG 60.816 55.000 0.00 0.00 42.84 4.17
2327 2339 1.894756 TAAGTGGCAACCGTGTGGC 60.895 57.895 0.00 2.55 44.09 5.01
2331 2343 2.672996 GGCAACCGTGTGGCAGAT 60.673 61.111 5.87 0.00 43.33 2.90
2332 2344 2.268076 GGCAACCGTGTGGCAGATT 61.268 57.895 5.87 0.00 43.33 2.40
2333 2345 1.081242 GCAACCGTGTGGCAGATTG 60.081 57.895 0.00 0.00 39.70 2.67
2334 2346 1.081242 CAACCGTGTGGCAGATTGC 60.081 57.895 0.00 0.00 44.08 3.56
2335 2347 2.616330 AACCGTGTGGCAGATTGCG 61.616 57.895 0.00 0.00 46.21 4.85
2336 2348 2.741985 CCGTGTGGCAGATTGCGA 60.742 61.111 0.00 0.00 46.21 5.10
2337 2349 2.324330 CCGTGTGGCAGATTGCGAA 61.324 57.895 0.00 0.00 46.21 4.70
2338 2350 1.573932 CGTGTGGCAGATTGCGAAA 59.426 52.632 0.00 0.00 46.21 3.46
2339 2351 0.725784 CGTGTGGCAGATTGCGAAAC 60.726 55.000 0.00 0.00 46.21 2.78
2340 2352 0.593128 GTGTGGCAGATTGCGAAACT 59.407 50.000 0.00 0.00 46.21 2.66
2341 2353 0.592637 TGTGGCAGATTGCGAAACTG 59.407 50.000 7.03 7.03 46.21 3.16
2345 2357 3.389741 CAGATTGCGAAACTGCCAC 57.610 52.632 0.00 0.00 0.00 5.01
2346 2358 0.592637 CAGATTGCGAAACTGCCACA 59.407 50.000 0.00 0.00 0.00 4.17
2347 2359 0.593128 AGATTGCGAAACTGCCACAC 59.407 50.000 0.00 0.00 0.00 3.82
2348 2360 0.725784 GATTGCGAAACTGCCACACG 60.726 55.000 0.00 0.00 0.00 4.49
2365 2377 3.620785 GCATCGCCCTCCCGATCT 61.621 66.667 0.00 0.00 45.35 2.75
2366 2378 2.653702 CATCGCCCTCCCGATCTC 59.346 66.667 0.00 0.00 45.35 2.75
2367 2379 2.601966 ATCGCCCTCCCGATCTCC 60.602 66.667 0.00 0.00 43.91 3.71
2368 2380 3.153629 ATCGCCCTCCCGATCTCCT 62.154 63.158 0.00 0.00 43.91 3.69
2369 2381 2.664835 ATCGCCCTCCCGATCTCCTT 62.665 60.000 0.00 0.00 43.91 3.36
2370 2382 2.862223 CGCCCTCCCGATCTCCTTC 61.862 68.421 0.00 0.00 0.00 3.46
2371 2383 2.512355 GCCCTCCCGATCTCCTTCC 61.512 68.421 0.00 0.00 0.00 3.46
2372 2384 1.234529 CCCTCCCGATCTCCTTCCT 59.765 63.158 0.00 0.00 0.00 3.36
2373 2385 0.399233 CCCTCCCGATCTCCTTCCTT 60.399 60.000 0.00 0.00 0.00 3.36
2374 2386 1.501582 CCTCCCGATCTCCTTCCTTT 58.498 55.000 0.00 0.00 0.00 3.11
2375 2387 1.414550 CCTCCCGATCTCCTTCCTTTC 59.585 57.143 0.00 0.00 0.00 2.62
2376 2388 1.414550 CTCCCGATCTCCTTCCTTTCC 59.585 57.143 0.00 0.00 0.00 3.13
2377 2389 0.470341 CCCGATCTCCTTCCTTTCCC 59.530 60.000 0.00 0.00 0.00 3.97
2378 2390 0.105039 CCGATCTCCTTCCTTTCCCG 59.895 60.000 0.00 0.00 0.00 5.14
2379 2391 0.530870 CGATCTCCTTCCTTTCCCGC 60.531 60.000 0.00 0.00 0.00 6.13
2380 2392 0.541863 GATCTCCTTCCTTTCCCGCA 59.458 55.000 0.00 0.00 0.00 5.69
2381 2393 0.253327 ATCTCCTTCCTTTCCCGCAC 59.747 55.000 0.00 0.00 0.00 5.34
2382 2394 1.741770 CTCCTTCCTTTCCCGCACG 60.742 63.158 0.00 0.00 0.00 5.34
2383 2395 2.032071 CCTTCCTTTCCCGCACGT 59.968 61.111 0.00 0.00 0.00 4.49
2384 2396 2.033194 CCTTCCTTTCCCGCACGTC 61.033 63.158 0.00 0.00 0.00 4.34
2385 2397 2.031465 TTCCTTTCCCGCACGTCC 59.969 61.111 0.00 0.00 0.00 4.79
2386 2398 2.450479 CTTCCTTTCCCGCACGTCCT 62.450 60.000 0.00 0.00 0.00 3.85
2387 2399 2.434359 CCTTTCCCGCACGTCCTC 60.434 66.667 0.00 0.00 0.00 3.71
2388 2400 2.809601 CTTTCCCGCACGTCCTCG 60.810 66.667 0.00 0.00 43.34 4.63
2400 2412 1.956297 CGTCCTCGTGATCTCCTACT 58.044 55.000 0.00 0.00 0.00 2.57
2401 2413 2.290464 CGTCCTCGTGATCTCCTACTT 58.710 52.381 0.00 0.00 0.00 2.24
2402 2414 2.288458 CGTCCTCGTGATCTCCTACTTC 59.712 54.545 0.00 0.00 0.00 3.01
2403 2415 2.619646 GTCCTCGTGATCTCCTACTTCC 59.380 54.545 0.00 0.00 0.00 3.46
2404 2416 2.510382 TCCTCGTGATCTCCTACTTCCT 59.490 50.000 0.00 0.00 0.00 3.36
2405 2417 3.053544 TCCTCGTGATCTCCTACTTCCTT 60.054 47.826 0.00 0.00 0.00 3.36
2406 2418 3.316868 CCTCGTGATCTCCTACTTCCTTC 59.683 52.174 0.00 0.00 0.00 3.46
2407 2419 3.288964 TCGTGATCTCCTACTTCCTTCC 58.711 50.000 0.00 0.00 0.00 3.46
2408 2420 2.362717 CGTGATCTCCTACTTCCTTCCC 59.637 54.545 0.00 0.00 0.00 3.97
2409 2421 2.701423 GTGATCTCCTACTTCCTTCCCC 59.299 54.545 0.00 0.00 0.00 4.81
2410 2422 1.964933 GATCTCCTACTTCCTTCCCCG 59.035 57.143 0.00 0.00 0.00 5.73
2411 2423 0.686769 TCTCCTACTTCCTTCCCCGC 60.687 60.000 0.00 0.00 0.00 6.13
2412 2424 0.976073 CTCCTACTTCCTTCCCCGCA 60.976 60.000 0.00 0.00 0.00 5.69
2413 2425 1.221021 CCTACTTCCTTCCCCGCAC 59.779 63.158 0.00 0.00 0.00 5.34
2414 2426 1.153628 CTACTTCCTTCCCCGCACG 60.154 63.158 0.00 0.00 0.00 5.34
2415 2427 3.305177 TACTTCCTTCCCCGCACGC 62.305 63.158 0.00 0.00 0.00 5.34
2426 2438 4.933064 CGCACGCCTCCCGATCTC 62.933 72.222 0.00 0.00 41.02 2.75
2427 2439 3.532155 GCACGCCTCCCGATCTCT 61.532 66.667 0.00 0.00 41.02 3.10
2428 2440 3.082579 GCACGCCTCCCGATCTCTT 62.083 63.158 0.00 0.00 41.02 2.85
2429 2441 1.517832 CACGCCTCCCGATCTCTTT 59.482 57.895 0.00 0.00 41.02 2.52
2430 2442 0.528684 CACGCCTCCCGATCTCTTTC 60.529 60.000 0.00 0.00 41.02 2.62
2431 2443 1.068250 CGCCTCCCGATCTCTTTCC 59.932 63.158 0.00 0.00 40.02 3.13
2432 2444 1.395826 CGCCTCCCGATCTCTTTCCT 61.396 60.000 0.00 0.00 40.02 3.36
2433 2445 0.833949 GCCTCCCGATCTCTTTCCTT 59.166 55.000 0.00 0.00 0.00 3.36
2434 2446 1.210722 GCCTCCCGATCTCTTTCCTTT 59.789 52.381 0.00 0.00 0.00 3.11
2435 2447 2.434702 GCCTCCCGATCTCTTTCCTTTA 59.565 50.000 0.00 0.00 0.00 1.85
2436 2448 3.071747 GCCTCCCGATCTCTTTCCTTTAT 59.928 47.826 0.00 0.00 0.00 1.40
2437 2449 4.801247 GCCTCCCGATCTCTTTCCTTTATC 60.801 50.000 0.00 0.00 0.00 1.75
2438 2450 4.551388 CTCCCGATCTCTTTCCTTTATCG 58.449 47.826 0.00 0.00 39.23 2.92
2439 2451 3.060602 CCCGATCTCTTTCCTTTATCGC 58.939 50.000 0.00 0.00 38.43 4.58
2440 2452 3.060602 CCGATCTCTTTCCTTTATCGCC 58.939 50.000 0.00 0.00 38.43 5.54
2441 2453 3.060602 CGATCTCTTTCCTTTATCGCCC 58.939 50.000 0.00 0.00 33.84 6.13
2442 2454 3.243907 CGATCTCTTTCCTTTATCGCCCT 60.244 47.826 0.00 0.00 33.84 5.19
2443 2455 3.821421 TCTCTTTCCTTTATCGCCCTC 57.179 47.619 0.00 0.00 0.00 4.30
2444 2456 2.434702 TCTCTTTCCTTTATCGCCCTCC 59.565 50.000 0.00 0.00 0.00 4.30
2445 2457 2.436173 CTCTTTCCTTTATCGCCCTCCT 59.564 50.000 0.00 0.00 0.00 3.69
2446 2458 2.170607 TCTTTCCTTTATCGCCCTCCTG 59.829 50.000 0.00 0.00 0.00 3.86
2447 2459 1.874129 TTCCTTTATCGCCCTCCTGA 58.126 50.000 0.00 0.00 0.00 3.86
2448 2460 2.103153 TCCTTTATCGCCCTCCTGAT 57.897 50.000 0.00 0.00 0.00 2.90
2449 2461 2.408565 TCCTTTATCGCCCTCCTGATT 58.591 47.619 0.00 0.00 0.00 2.57
2450 2462 2.777692 TCCTTTATCGCCCTCCTGATTT 59.222 45.455 0.00 0.00 0.00 2.17
2451 2463 3.142174 CCTTTATCGCCCTCCTGATTTC 58.858 50.000 0.00 0.00 0.00 2.17
2452 2464 2.930826 TTATCGCCCTCCTGATTTCC 57.069 50.000 0.00 0.00 0.00 3.13
2453 2465 2.103153 TATCGCCCTCCTGATTTCCT 57.897 50.000 0.00 0.00 0.00 3.36
2454 2466 1.216990 ATCGCCCTCCTGATTTCCTT 58.783 50.000 0.00 0.00 0.00 3.36
2455 2467 0.541863 TCGCCCTCCTGATTTCCTTC 59.458 55.000 0.00 0.00 0.00 3.46
2456 2468 0.464554 CGCCCTCCTGATTTCCTTCC 60.465 60.000 0.00 0.00 0.00 3.46
2457 2469 0.922626 GCCCTCCTGATTTCCTTCCT 59.077 55.000 0.00 0.00 0.00 3.36
2458 2470 1.286257 GCCCTCCTGATTTCCTTCCTT 59.714 52.381 0.00 0.00 0.00 3.36
2459 2471 2.291865 GCCCTCCTGATTTCCTTCCTTT 60.292 50.000 0.00 0.00 0.00 3.11
2460 2472 3.625853 CCCTCCTGATTTCCTTCCTTTC 58.374 50.000 0.00 0.00 0.00 2.62
2461 2473 3.010584 CCCTCCTGATTTCCTTCCTTTCA 59.989 47.826 0.00 0.00 0.00 2.69
2462 2474 4.509122 CCCTCCTGATTTCCTTCCTTTCAA 60.509 45.833 0.00 0.00 0.00 2.69
2463 2475 5.267587 CCTCCTGATTTCCTTCCTTTCAAT 58.732 41.667 0.00 0.00 0.00 2.57
2464 2476 5.718607 CCTCCTGATTTCCTTCCTTTCAATT 59.281 40.000 0.00 0.00 0.00 2.32
2465 2477 6.891908 CCTCCTGATTTCCTTCCTTTCAATTA 59.108 38.462 0.00 0.00 0.00 1.40
2466 2478 7.148000 CCTCCTGATTTCCTTCCTTTCAATTAC 60.148 40.741 0.00 0.00 0.00 1.89
2467 2479 6.663523 TCCTGATTTCCTTCCTTTCAATTACC 59.336 38.462 0.00 0.00 0.00 2.85
2468 2480 6.437162 CCTGATTTCCTTCCTTTCAATTACCA 59.563 38.462 0.00 0.00 0.00 3.25
2469 2481 7.363268 CCTGATTTCCTTCCTTTCAATTACCAG 60.363 40.741 0.00 0.00 0.00 4.00
2470 2482 7.010160 TGATTTCCTTCCTTTCAATTACCAGT 58.990 34.615 0.00 0.00 0.00 4.00
2471 2483 7.508977 TGATTTCCTTCCTTTCAATTACCAGTT 59.491 33.333 0.00 0.00 0.00 3.16
2472 2484 8.950007 ATTTCCTTCCTTTCAATTACCAGTTA 57.050 30.769 0.00 0.00 0.00 2.24
2473 2485 7.754851 TTCCTTCCTTTCAATTACCAGTTAC 57.245 36.000 0.00 0.00 0.00 2.50
2474 2486 6.843752 TCCTTCCTTTCAATTACCAGTTACA 58.156 36.000 0.00 0.00 0.00 2.41
2475 2487 6.940298 TCCTTCCTTTCAATTACCAGTTACAG 59.060 38.462 0.00 0.00 0.00 2.74
2476 2488 6.349363 CCTTCCTTTCAATTACCAGTTACAGC 60.349 42.308 0.00 0.00 0.00 4.40
2477 2489 5.007682 TCCTTTCAATTACCAGTTACAGCC 58.992 41.667 0.00 0.00 0.00 4.85
2478 2490 4.157840 CCTTTCAATTACCAGTTACAGCCC 59.842 45.833 0.00 0.00 0.00 5.19
2479 2491 3.359695 TCAATTACCAGTTACAGCCCC 57.640 47.619 0.00 0.00 0.00 5.80
2480 2492 2.645297 TCAATTACCAGTTACAGCCCCA 59.355 45.455 0.00 0.00 0.00 4.96
2481 2493 2.752903 CAATTACCAGTTACAGCCCCAC 59.247 50.000 0.00 0.00 0.00 4.61
2482 2494 0.322322 TTACCAGTTACAGCCCCACG 59.678 55.000 0.00 0.00 0.00 4.94
2483 2495 2.175035 TACCAGTTACAGCCCCACGC 62.175 60.000 0.00 0.00 37.98 5.34
2484 2496 3.118454 CAGTTACAGCCCCACGCG 61.118 66.667 3.53 3.53 44.76 6.01
2494 2506 4.473520 CCCACGCGCCTTCCAGAT 62.474 66.667 5.73 0.00 0.00 2.90
2495 2507 2.436646 CCACGCGCCTTCCAGATT 60.437 61.111 5.73 0.00 0.00 2.40
2496 2508 2.040544 CCACGCGCCTTCCAGATTT 61.041 57.895 5.73 0.00 0.00 2.17
2497 2509 1.586154 CCACGCGCCTTCCAGATTTT 61.586 55.000 5.73 0.00 0.00 1.82
2498 2510 0.240945 CACGCGCCTTCCAGATTTTT 59.759 50.000 5.73 0.00 0.00 1.94
2499 2511 0.240945 ACGCGCCTTCCAGATTTTTG 59.759 50.000 5.73 0.00 0.00 2.44
2500 2512 0.521291 CGCGCCTTCCAGATTTTTGA 59.479 50.000 0.00 0.00 0.00 2.69
2501 2513 1.466360 CGCGCCTTCCAGATTTTTGAG 60.466 52.381 0.00 0.00 0.00 3.02
2502 2514 1.733718 GCGCCTTCCAGATTTTTGAGC 60.734 52.381 0.00 0.00 0.00 4.26
2503 2515 1.541147 CGCCTTCCAGATTTTTGAGCA 59.459 47.619 0.00 0.00 0.00 4.26
2504 2516 2.030007 CGCCTTCCAGATTTTTGAGCAA 60.030 45.455 0.00 0.00 0.00 3.91
2505 2517 3.552684 CGCCTTCCAGATTTTTGAGCAAA 60.553 43.478 0.00 0.00 0.00 3.68
2506 2518 4.379652 GCCTTCCAGATTTTTGAGCAAAA 58.620 39.130 4.39 4.39 38.76 2.44
2524 2536 6.740411 GCAAAAATAATGCTTGAATTGGGA 57.260 33.333 0.00 0.00 40.64 4.37
2525 2537 7.324354 GCAAAAATAATGCTTGAATTGGGAT 57.676 32.000 0.00 0.00 40.64 3.85
2526 2538 7.764331 GCAAAAATAATGCTTGAATTGGGATT 58.236 30.769 0.00 0.00 40.64 3.01
2527 2539 8.245491 GCAAAAATAATGCTTGAATTGGGATTT 58.755 29.630 0.00 0.00 40.64 2.17
2534 2546 7.909485 ATGCTTGAATTGGGATTTAATCTCT 57.091 32.000 6.37 0.00 0.00 3.10
2535 2547 7.104043 TGCTTGAATTGGGATTTAATCTCTG 57.896 36.000 6.37 0.00 0.00 3.35
2536 2548 6.097270 TGCTTGAATTGGGATTTAATCTCTGG 59.903 38.462 6.37 0.00 0.00 3.86
2537 2549 6.097412 GCTTGAATTGGGATTTAATCTCTGGT 59.903 38.462 6.37 0.00 0.00 4.00
2538 2550 7.645058 TTGAATTGGGATTTAATCTCTGGTC 57.355 36.000 6.37 1.68 0.00 4.02
2539 2551 6.973642 TGAATTGGGATTTAATCTCTGGTCT 58.026 36.000 6.37 0.00 0.00 3.85
2540 2552 6.830324 TGAATTGGGATTTAATCTCTGGTCTG 59.170 38.462 6.37 0.00 0.00 3.51
2541 2553 4.156455 TGGGATTTAATCTCTGGTCTGC 57.844 45.455 6.37 0.00 0.00 4.26
2542 2554 3.523157 TGGGATTTAATCTCTGGTCTGCA 59.477 43.478 6.37 0.00 0.00 4.41
2543 2555 4.133078 GGGATTTAATCTCTGGTCTGCAG 58.867 47.826 7.63 7.63 0.00 4.41
2544 2556 4.133078 GGATTTAATCTCTGGTCTGCAGG 58.867 47.826 15.13 0.00 0.00 4.85
2545 2557 4.384647 GGATTTAATCTCTGGTCTGCAGGT 60.385 45.833 15.13 0.00 0.00 4.00
2546 2558 5.163301 GGATTTAATCTCTGGTCTGCAGGTA 60.163 44.000 15.13 0.00 0.00 3.08
2547 2559 5.755409 TTTAATCTCTGGTCTGCAGGTAA 57.245 39.130 15.13 0.00 0.00 2.85
2548 2560 5.957771 TTAATCTCTGGTCTGCAGGTAAT 57.042 39.130 15.13 0.00 0.00 1.89
2549 2561 4.414337 AATCTCTGGTCTGCAGGTAATC 57.586 45.455 15.13 0.00 0.00 1.75
2550 2562 2.820178 TCTCTGGTCTGCAGGTAATCA 58.180 47.619 15.13 0.00 0.00 2.57
2551 2563 3.173151 TCTCTGGTCTGCAGGTAATCAA 58.827 45.455 15.13 0.00 0.00 2.57
2552 2564 3.055819 TCTCTGGTCTGCAGGTAATCAAC 60.056 47.826 15.13 2.06 0.00 3.18
2553 2565 2.002586 CTGGTCTGCAGGTAATCAACG 58.997 52.381 15.13 0.00 0.00 4.10
2554 2566 1.621317 TGGTCTGCAGGTAATCAACGA 59.379 47.619 15.13 0.00 0.00 3.85
2555 2567 2.037902 TGGTCTGCAGGTAATCAACGAA 59.962 45.455 15.13 0.00 0.00 3.85
2556 2568 2.673368 GGTCTGCAGGTAATCAACGAAG 59.327 50.000 15.13 0.00 0.00 3.79
2557 2569 2.673368 GTCTGCAGGTAATCAACGAAGG 59.327 50.000 15.13 0.00 0.00 3.46
2558 2570 2.009774 CTGCAGGTAATCAACGAAGGG 58.990 52.381 5.57 0.00 0.00 3.95
2559 2571 1.626321 TGCAGGTAATCAACGAAGGGA 59.374 47.619 0.00 0.00 0.00 4.20
2560 2572 2.280628 GCAGGTAATCAACGAAGGGAG 58.719 52.381 0.00 0.00 0.00 4.30
2561 2573 2.280628 CAGGTAATCAACGAAGGGAGC 58.719 52.381 0.00 0.00 0.00 4.70
2562 2574 2.093447 CAGGTAATCAACGAAGGGAGCT 60.093 50.000 0.00 0.00 0.00 4.09
2563 2575 3.132289 CAGGTAATCAACGAAGGGAGCTA 59.868 47.826 0.00 0.00 0.00 3.32
2564 2576 3.773119 AGGTAATCAACGAAGGGAGCTAA 59.227 43.478 0.00 0.00 0.00 3.09
2565 2577 3.869832 GGTAATCAACGAAGGGAGCTAAC 59.130 47.826 0.00 0.00 0.00 2.34
2566 2578 2.693267 ATCAACGAAGGGAGCTAACC 57.307 50.000 0.00 0.00 0.00 2.85
2567 2579 1.344065 TCAACGAAGGGAGCTAACCA 58.656 50.000 9.41 0.00 0.00 3.67
2568 2580 1.906574 TCAACGAAGGGAGCTAACCAT 59.093 47.619 9.41 0.00 0.00 3.55
2569 2581 2.093658 TCAACGAAGGGAGCTAACCATC 60.094 50.000 9.41 5.99 0.00 3.51
2570 2582 1.867363 ACGAAGGGAGCTAACCATCT 58.133 50.000 9.41 0.00 0.00 2.90
2571 2583 1.757699 ACGAAGGGAGCTAACCATCTC 59.242 52.381 9.41 2.68 0.00 2.75
2572 2584 1.269309 CGAAGGGAGCTAACCATCTCG 60.269 57.143 9.41 9.69 0.00 4.04
2573 2585 0.466124 AAGGGAGCTAACCATCTCGC 59.534 55.000 9.41 0.00 41.03 5.03
2574 2586 1.069935 GGGAGCTAACCATCTCGCC 59.930 63.158 2.14 0.00 36.60 5.54
2575 2587 1.403687 GGGAGCTAACCATCTCGCCT 61.404 60.000 2.14 0.00 36.60 5.52
2576 2588 1.329256 GGAGCTAACCATCTCGCCTA 58.671 55.000 0.00 0.00 0.00 3.93
2577 2589 1.896465 GGAGCTAACCATCTCGCCTAT 59.104 52.381 0.00 0.00 0.00 2.57
2578 2590 2.353208 GGAGCTAACCATCTCGCCTATG 60.353 54.545 0.00 0.00 0.00 2.23
2579 2591 2.558795 GAGCTAACCATCTCGCCTATGA 59.441 50.000 0.00 0.00 0.00 2.15
2580 2592 2.297597 AGCTAACCATCTCGCCTATGAC 59.702 50.000 0.00 0.00 0.00 3.06
2581 2593 2.035961 GCTAACCATCTCGCCTATGACA 59.964 50.000 0.00 0.00 0.00 3.58
2582 2594 2.604046 AACCATCTCGCCTATGACAC 57.396 50.000 0.00 0.00 0.00 3.67
2583 2595 1.781786 ACCATCTCGCCTATGACACT 58.218 50.000 0.00 0.00 0.00 3.55
2584 2596 1.683917 ACCATCTCGCCTATGACACTC 59.316 52.381 0.00 0.00 0.00 3.51
2585 2597 1.683385 CCATCTCGCCTATGACACTCA 59.317 52.381 0.00 0.00 0.00 3.41
2586 2598 2.298446 CCATCTCGCCTATGACACTCAT 59.702 50.000 0.00 0.00 40.72 2.90
2587 2599 3.244009 CCATCTCGCCTATGACACTCATT 60.244 47.826 0.00 0.00 38.26 2.57
2588 2600 3.443099 TCTCGCCTATGACACTCATTG 57.557 47.619 0.00 0.00 38.26 2.82
2589 2601 2.760650 TCTCGCCTATGACACTCATTGT 59.239 45.455 0.00 0.00 43.10 2.71
2590 2602 3.195610 TCTCGCCTATGACACTCATTGTT 59.804 43.478 0.00 0.00 39.17 2.83
2591 2603 3.261580 TCGCCTATGACACTCATTGTTG 58.738 45.455 0.00 0.00 39.17 3.33
2592 2604 3.056179 TCGCCTATGACACTCATTGTTGA 60.056 43.478 0.00 0.00 39.17 3.18
2593 2605 3.684305 CGCCTATGACACTCATTGTTGAA 59.316 43.478 0.00 0.00 39.17 2.69
2594 2606 4.436050 CGCCTATGACACTCATTGTTGAAC 60.436 45.833 0.00 0.00 39.17 3.18
2595 2607 4.455533 GCCTATGACACTCATTGTTGAACA 59.544 41.667 0.00 0.00 39.17 3.18
2596 2608 5.048782 GCCTATGACACTCATTGTTGAACAA 60.049 40.000 13.66 13.66 42.95 2.83
2597 2609 6.605849 CCTATGACACTCATTGTTGAACAAG 58.394 40.000 16.43 5.48 41.94 3.16
2598 2610 4.291540 TGACACTCATTGTTGAACAAGC 57.708 40.909 16.43 1.14 41.94 4.01
2599 2611 3.947196 TGACACTCATTGTTGAACAAGCT 59.053 39.130 16.43 0.00 41.94 3.74
2600 2612 5.122519 TGACACTCATTGTTGAACAAGCTA 58.877 37.500 16.43 3.63 41.94 3.32
2601 2613 5.588246 TGACACTCATTGTTGAACAAGCTAA 59.412 36.000 16.43 1.33 41.94 3.09
2602 2614 6.064846 ACACTCATTGTTGAACAAGCTAAG 57.935 37.500 16.43 12.04 41.94 2.18
2603 2615 5.822519 ACACTCATTGTTGAACAAGCTAAGA 59.177 36.000 16.43 7.97 41.94 2.10
2604 2616 6.318648 ACACTCATTGTTGAACAAGCTAAGAA 59.681 34.615 16.43 0.00 41.94 2.52
2605 2617 7.148086 ACACTCATTGTTGAACAAGCTAAGAAA 60.148 33.333 16.43 0.00 41.94 2.52
2606 2618 7.701924 CACTCATTGTTGAACAAGCTAAGAAAA 59.298 33.333 16.43 0.00 41.94 2.29
2607 2619 8.250332 ACTCATTGTTGAACAAGCTAAGAAAAA 58.750 29.630 16.43 0.00 41.94 1.94
2608 2620 9.252962 CTCATTGTTGAACAAGCTAAGAAAAAT 57.747 29.630 16.43 0.00 41.94 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.874134 GCTGGTAAACAAAGTCTCTTAGATGA 59.126 38.462 0.00 0.00 0.00 2.92
107 108 8.375506 CCATAACTGTAGAATCTTGGGCTATTA 58.624 37.037 0.00 0.00 0.00 0.98
155 156 7.870954 GGACGGTTGTTAGATCATCATACATTA 59.129 37.037 0.00 0.00 0.00 1.90
255 256 1.421268 TGTGCCAGGTCAATCTTCACT 59.579 47.619 0.00 0.00 0.00 3.41
802 803 2.827322 CCTCTGCAAATTGGTCATGGAA 59.173 45.455 0.00 0.00 0.00 3.53
857 858 5.012046 TGCTATGAATATGGAAGGTCGACAT 59.988 40.000 18.91 7.60 0.00 3.06
866 868 9.056799 TGGTTAGGATATGCTATGAATATGGAA 57.943 33.333 4.64 0.00 0.00 3.53
1083 1090 3.706594 CAGGCTCTATGTACTTCCTCCAA 59.293 47.826 0.00 0.00 0.00 3.53
1126 1133 0.608130 TCGAGTGGACAAGGGTGATG 59.392 55.000 0.00 0.00 0.00 3.07
1127 1134 1.348064 TTCGAGTGGACAAGGGTGAT 58.652 50.000 0.00 0.00 0.00 3.06
1159 1167 0.251634 TGCATGTATGGAGCGGTGAA 59.748 50.000 0.00 0.00 0.00 3.18
1208 1216 3.928992 ACAGTTGTCTGCGAACATGATAG 59.071 43.478 0.00 0.00 44.77 2.08
1237 1245 1.721487 GGTCAATGGATCGGCGTTG 59.279 57.895 6.85 3.55 0.00 4.10
1255 1263 1.860950 CCAGTGCGGATAGATTGAACG 59.139 52.381 0.00 0.00 36.56 3.95
1342 1350 8.761575 AGTGTTGACAAATTGCCATATAAAAG 57.238 30.769 0.00 0.00 0.00 2.27
1347 1355 7.665690 TGTTTAGTGTTGACAAATTGCCATAT 58.334 30.769 0.00 0.00 0.00 1.78
1443 1453 2.994578 TCGTTTCCGCGTCATATCAAAA 59.005 40.909 4.92 0.00 0.00 2.44
1454 1464 1.136085 ACACAATGATTCGTTTCCGCG 60.136 47.619 0.00 0.00 0.00 6.46
1650 1660 3.055385 TGGAAAGGGAAACATACCTCTCG 60.055 47.826 0.00 0.00 35.64 4.04
1691 1703 0.667993 CAAACGGGAGCAAAGCTGAA 59.332 50.000 0.00 0.00 39.88 3.02
1696 1708 0.594796 GTGTGCAAACGGGAGCAAAG 60.595 55.000 0.00 0.00 43.20 2.77
1703 1715 3.971150 TCAAAATAAGTGTGCAAACGGG 58.029 40.909 0.16 0.00 0.00 5.28
1705 1717 5.365133 GCAATCAAAATAAGTGTGCAAACG 58.635 37.500 0.16 0.00 0.00 3.60
1710 1722 2.923020 CGGGCAATCAAAATAAGTGTGC 59.077 45.455 0.00 0.00 0.00 4.57
1714 1726 1.480545 GGGCGGGCAATCAAAATAAGT 59.519 47.619 3.27 0.00 0.00 2.24
1750 1762 3.094572 CCCAAGCCAATTTCATCTCTGT 58.905 45.455 0.00 0.00 0.00 3.41
1762 1774 1.144913 AGAAAGTAGCACCCAAGCCAA 59.855 47.619 0.00 0.00 34.23 4.52
1796 1808 0.753867 TTTGTAGCCTGTCACCGTCA 59.246 50.000 0.00 0.00 0.00 4.35
1883 1895 6.926313 TCCGAAGAAAAGAAAGAACCAAAAA 58.074 32.000 0.00 0.00 0.00 1.94
1884 1896 6.518208 TCCGAAGAAAAGAAAGAACCAAAA 57.482 33.333 0.00 0.00 0.00 2.44
1885 1897 6.709018 ATCCGAAGAAAAGAAAGAACCAAA 57.291 33.333 0.00 0.00 0.00 3.28
1886 1898 6.709018 AATCCGAAGAAAAGAAAGAACCAA 57.291 33.333 0.00 0.00 0.00 3.67
1887 1899 7.811117 TTAATCCGAAGAAAAGAAAGAACCA 57.189 32.000 0.00 0.00 0.00 3.67
1888 1900 9.692749 AAATTAATCCGAAGAAAAGAAAGAACC 57.307 29.630 0.00 0.00 0.00 3.62
1893 1905 9.908152 GGAGAAAATTAATCCGAAGAAAAGAAA 57.092 29.630 0.00 0.00 0.00 2.52
1894 1906 9.297037 AGGAGAAAATTAATCCGAAGAAAAGAA 57.703 29.630 0.00 0.00 38.20 2.52
1895 1907 8.863872 AGGAGAAAATTAATCCGAAGAAAAGA 57.136 30.769 0.00 0.00 38.20 2.52
1896 1908 9.914131 AAAGGAGAAAATTAATCCGAAGAAAAG 57.086 29.630 0.00 0.00 38.20 2.27
1898 1910 9.908152 GAAAAGGAGAAAATTAATCCGAAGAAA 57.092 29.630 0.00 0.00 38.20 2.52
1899 1911 9.073475 TGAAAAGGAGAAAATTAATCCGAAGAA 57.927 29.630 0.00 0.00 38.20 2.52
1900 1912 8.630054 TGAAAAGGAGAAAATTAATCCGAAGA 57.370 30.769 0.00 0.00 38.20 2.87
1901 1913 9.860898 AATGAAAAGGAGAAAATTAATCCGAAG 57.139 29.630 0.00 0.00 38.20 3.79
1915 1927 9.942850 AGAAAACAAAAGAAAATGAAAAGGAGA 57.057 25.926 0.00 0.00 0.00 3.71
1917 1929 9.942850 AGAGAAAACAAAAGAAAATGAAAAGGA 57.057 25.926 0.00 0.00 0.00 3.36
1920 1932 9.824534 GCAAGAGAAAACAAAAGAAAATGAAAA 57.175 25.926 0.00 0.00 0.00 2.29
1921 1933 8.997323 TGCAAGAGAAAACAAAAGAAAATGAAA 58.003 25.926 0.00 0.00 0.00 2.69
1922 1934 8.545229 TGCAAGAGAAAACAAAAGAAAATGAA 57.455 26.923 0.00 0.00 0.00 2.57
1923 1935 8.721019 ATGCAAGAGAAAACAAAAGAAAATGA 57.279 26.923 0.00 0.00 0.00 2.57
1924 1936 9.777575 AAATGCAAGAGAAAACAAAAGAAAATG 57.222 25.926 0.00 0.00 0.00 2.32
1926 1938 9.824534 GAAAATGCAAGAGAAAACAAAAGAAAA 57.175 25.926 0.00 0.00 0.00 2.29
1927 1939 8.997323 TGAAAATGCAAGAGAAAACAAAAGAAA 58.003 25.926 0.00 0.00 0.00 2.52
1928 1940 8.545229 TGAAAATGCAAGAGAAAACAAAAGAA 57.455 26.923 0.00 0.00 0.00 2.52
1929 1941 8.721019 ATGAAAATGCAAGAGAAAACAAAAGA 57.279 26.923 0.00 0.00 0.00 2.52
1930 1942 9.217223 CAATGAAAATGCAAGAGAAAACAAAAG 57.783 29.630 0.00 0.00 0.00 2.27
1931 1943 8.728833 ACAATGAAAATGCAAGAGAAAACAAAA 58.271 25.926 0.00 0.00 0.00 2.44
1932 1944 8.266392 ACAATGAAAATGCAAGAGAAAACAAA 57.734 26.923 0.00 0.00 0.00 2.83
1933 1945 7.846644 ACAATGAAAATGCAAGAGAAAACAA 57.153 28.000 0.00 0.00 0.00 2.83
1934 1946 7.846644 AACAATGAAAATGCAAGAGAAAACA 57.153 28.000 0.00 0.00 0.00 2.83
1935 1947 9.213819 GAAAACAATGAAAATGCAAGAGAAAAC 57.786 29.630 0.00 0.00 0.00 2.43
1936 1948 9.165035 AGAAAACAATGAAAATGCAAGAGAAAA 57.835 25.926 0.00 0.00 0.00 2.29
1937 1949 8.721019 AGAAAACAATGAAAATGCAAGAGAAA 57.279 26.923 0.00 0.00 0.00 2.52
1938 1950 9.985730 ATAGAAAACAATGAAAATGCAAGAGAA 57.014 25.926 0.00 0.00 0.00 2.87
2047 2059 8.918202 TGTCTGTTAAAGAATGTTAACCATCT 57.082 30.769 2.48 3.86 41.36 2.90
2055 2067 9.912634 CATGGTAAATGTCTGTTAAAGAATGTT 57.087 29.630 0.00 0.00 36.40 2.71
2056 2068 8.028938 GCATGGTAAATGTCTGTTAAAGAATGT 58.971 33.333 0.00 0.00 36.40 2.71
2057 2069 8.246180 AGCATGGTAAATGTCTGTTAAAGAATG 58.754 33.333 0.00 0.00 36.40 2.67
2058 2070 8.353423 AGCATGGTAAATGTCTGTTAAAGAAT 57.647 30.769 0.00 0.00 36.40 2.40
2059 2071 7.759489 AGCATGGTAAATGTCTGTTAAAGAA 57.241 32.000 0.00 0.00 36.40 2.52
2060 2072 7.446931 TCAAGCATGGTAAATGTCTGTTAAAGA 59.553 33.333 0.00 0.00 0.00 2.52
2061 2073 7.592938 TCAAGCATGGTAAATGTCTGTTAAAG 58.407 34.615 0.00 0.00 0.00 1.85
2062 2074 7.517614 TCAAGCATGGTAAATGTCTGTTAAA 57.482 32.000 0.00 0.00 0.00 1.52
2063 2075 7.701539 ATCAAGCATGGTAAATGTCTGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
2064 2076 7.701539 AATCAAGCATGGTAAATGTCTGTTA 57.298 32.000 0.00 0.00 0.00 2.41
2065 2077 6.594788 AATCAAGCATGGTAAATGTCTGTT 57.405 33.333 0.00 0.00 0.00 3.16
2066 2078 7.701539 TTAATCAAGCATGGTAAATGTCTGT 57.298 32.000 0.00 0.00 0.00 3.41
2067 2079 8.984891 TTTTAATCAAGCATGGTAAATGTCTG 57.015 30.769 0.00 0.00 0.00 3.51
2108 2120 9.778741 TGTTGCCCATGTATTAAAAATTGTTAA 57.221 25.926 3.28 3.28 0.00 2.01
2109 2121 9.950496 ATGTTGCCCATGTATTAAAAATTGTTA 57.050 25.926 0.00 0.00 30.69 2.41
2110 2122 8.860780 ATGTTGCCCATGTATTAAAAATTGTT 57.139 26.923 0.00 0.00 30.69 2.83
2111 2123 8.860780 AATGTTGCCCATGTATTAAAAATTGT 57.139 26.923 0.00 0.00 32.82 2.71
2201 2213 9.558396 AATGTTGACCATGTATTGAAAAATGTT 57.442 25.926 0.00 0.00 32.82 2.71
2202 2214 9.558396 AAATGTTGACCATGTATTGAAAAATGT 57.442 25.926 0.00 0.00 32.82 2.71
2293 2305 9.562583 GTTGCCACTTACATATTTCGATTAAAA 57.437 29.630 0.00 0.00 0.00 1.52
2294 2306 8.185505 GGTTGCCACTTACATATTTCGATTAAA 58.814 33.333 0.00 0.00 0.00 1.52
2295 2307 7.466185 CGGTTGCCACTTACATATTTCGATTAA 60.466 37.037 0.00 0.00 0.00 1.40
2296 2308 6.018588 CGGTTGCCACTTACATATTTCGATTA 60.019 38.462 0.00 0.00 0.00 1.75
2297 2309 5.220777 CGGTTGCCACTTACATATTTCGATT 60.221 40.000 0.00 0.00 0.00 3.34
2298 2310 4.272504 CGGTTGCCACTTACATATTTCGAT 59.727 41.667 0.00 0.00 0.00 3.59
2299 2311 3.619483 CGGTTGCCACTTACATATTTCGA 59.381 43.478 0.00 0.00 0.00 3.71
2300 2312 3.372822 ACGGTTGCCACTTACATATTTCG 59.627 43.478 0.00 0.00 0.00 3.46
2301 2313 4.155280 ACACGGTTGCCACTTACATATTTC 59.845 41.667 0.00 0.00 0.00 2.17
2302 2314 4.076394 ACACGGTTGCCACTTACATATTT 58.924 39.130 0.00 0.00 0.00 1.40
2303 2315 3.438781 CACACGGTTGCCACTTACATATT 59.561 43.478 0.00 0.00 0.00 1.28
2304 2316 3.006940 CACACGGTTGCCACTTACATAT 58.993 45.455 0.00 0.00 0.00 1.78
2305 2317 2.418692 CACACGGTTGCCACTTACATA 58.581 47.619 0.00 0.00 0.00 2.29
2306 2318 1.234821 CACACGGTTGCCACTTACAT 58.765 50.000 0.00 0.00 0.00 2.29
2307 2319 0.816018 CCACACGGTTGCCACTTACA 60.816 55.000 0.00 0.00 0.00 2.41
2308 2320 1.946267 CCACACGGTTGCCACTTAC 59.054 57.895 0.00 0.00 0.00 2.34
2309 2321 1.894756 GCCACACGGTTGCCACTTA 60.895 57.895 0.00 0.00 33.28 2.24
2310 2322 3.216292 GCCACACGGTTGCCACTT 61.216 61.111 0.00 0.00 33.28 3.16
2311 2323 4.497984 TGCCACACGGTTGCCACT 62.498 61.111 0.00 0.00 33.28 4.00
2312 2324 3.964875 CTGCCACACGGTTGCCAC 61.965 66.667 0.00 0.00 33.28 5.01
2313 2325 2.974692 AATCTGCCACACGGTTGCCA 62.975 55.000 0.00 0.00 33.28 4.92
2314 2326 2.268076 AATCTGCCACACGGTTGCC 61.268 57.895 0.00 0.00 33.28 4.52
2315 2327 1.081242 CAATCTGCCACACGGTTGC 60.081 57.895 0.00 0.00 33.28 4.17
2316 2328 1.081242 GCAATCTGCCACACGGTTG 60.081 57.895 0.00 0.00 37.42 3.77
2317 2329 2.616330 CGCAATCTGCCACACGGTT 61.616 57.895 0.00 0.00 41.12 4.44
2318 2330 3.049674 CGCAATCTGCCACACGGT 61.050 61.111 0.00 0.00 41.12 4.83
2319 2331 1.851021 TTTCGCAATCTGCCACACGG 61.851 55.000 0.00 0.00 41.12 4.94
2320 2332 0.725784 GTTTCGCAATCTGCCACACG 60.726 55.000 0.00 0.00 41.12 4.49
2321 2333 0.593128 AGTTTCGCAATCTGCCACAC 59.407 50.000 0.00 0.00 41.12 3.82
2322 2334 0.592637 CAGTTTCGCAATCTGCCACA 59.407 50.000 0.00 0.00 41.12 4.17
2323 2335 0.730494 GCAGTTTCGCAATCTGCCAC 60.730 55.000 15.35 0.00 45.76 5.01
2324 2336 1.580942 GCAGTTTCGCAATCTGCCA 59.419 52.632 15.35 0.00 45.76 4.92
2325 2337 4.465413 GCAGTTTCGCAATCTGCC 57.535 55.556 15.35 4.49 45.76 4.85
2327 2339 0.592637 TGTGGCAGTTTCGCAATCTG 59.407 50.000 0.00 0.00 0.00 2.90
2328 2340 0.593128 GTGTGGCAGTTTCGCAATCT 59.407 50.000 0.00 0.00 0.00 2.40
2329 2341 0.725784 CGTGTGGCAGTTTCGCAATC 60.726 55.000 0.00 0.00 0.00 2.67
2330 2342 1.282570 CGTGTGGCAGTTTCGCAAT 59.717 52.632 0.00 0.00 0.00 3.56
2331 2343 2.712539 CGTGTGGCAGTTTCGCAA 59.287 55.556 0.00 0.00 0.00 4.85
2332 2344 3.947841 GCGTGTGGCAGTTTCGCA 61.948 61.111 16.36 0.00 45.01 5.10
2348 2360 3.581687 GAGATCGGGAGGGCGATGC 62.582 68.421 0.00 0.00 0.00 3.91
2349 2361 2.653702 GAGATCGGGAGGGCGATG 59.346 66.667 0.00 0.00 0.00 3.84
2350 2362 2.601966 GGAGATCGGGAGGGCGAT 60.602 66.667 0.00 0.00 0.00 4.58
2351 2363 3.375443 AAGGAGATCGGGAGGGCGA 62.375 63.158 0.00 0.00 0.00 5.54
2352 2364 2.840102 AAGGAGATCGGGAGGGCG 60.840 66.667 0.00 0.00 0.00 6.13
2353 2365 2.512355 GGAAGGAGATCGGGAGGGC 61.512 68.421 0.00 0.00 0.00 5.19
2354 2366 0.399233 AAGGAAGGAGATCGGGAGGG 60.399 60.000 0.00 0.00 0.00 4.30
2355 2367 1.414550 GAAAGGAAGGAGATCGGGAGG 59.585 57.143 0.00 0.00 0.00 4.30
2356 2368 1.414550 GGAAAGGAAGGAGATCGGGAG 59.585 57.143 0.00 0.00 0.00 4.30
2357 2369 1.497161 GGAAAGGAAGGAGATCGGGA 58.503 55.000 0.00 0.00 0.00 5.14
2358 2370 0.470341 GGGAAAGGAAGGAGATCGGG 59.530 60.000 0.00 0.00 0.00 5.14
2359 2371 0.105039 CGGGAAAGGAAGGAGATCGG 59.895 60.000 0.00 0.00 0.00 4.18
2360 2372 0.530870 GCGGGAAAGGAAGGAGATCG 60.531 60.000 0.00 0.00 0.00 3.69
2361 2373 0.541863 TGCGGGAAAGGAAGGAGATC 59.458 55.000 0.00 0.00 0.00 2.75
2362 2374 0.253327 GTGCGGGAAAGGAAGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
2363 2375 1.677552 GTGCGGGAAAGGAAGGAGA 59.322 57.895 0.00 0.00 0.00 3.71
2364 2376 1.741770 CGTGCGGGAAAGGAAGGAG 60.742 63.158 0.00 0.00 0.00 3.69
2365 2377 2.345991 CGTGCGGGAAAGGAAGGA 59.654 61.111 0.00 0.00 0.00 3.36
2366 2378 2.032071 ACGTGCGGGAAAGGAAGG 59.968 61.111 0.00 0.00 0.00 3.46
2367 2379 2.033194 GGACGTGCGGGAAAGGAAG 61.033 63.158 0.00 0.00 0.00 3.46
2368 2380 2.031465 GGACGTGCGGGAAAGGAA 59.969 61.111 0.00 0.00 0.00 3.36
2369 2381 2.920912 AGGACGTGCGGGAAAGGA 60.921 61.111 0.00 0.00 0.00 3.36
2370 2382 2.434359 GAGGACGTGCGGGAAAGG 60.434 66.667 0.00 0.00 0.00 3.11
2371 2383 2.809601 CGAGGACGTGCGGGAAAG 60.810 66.667 0.00 0.00 34.56 2.62
2381 2393 1.956297 AGTAGGAGATCACGAGGACG 58.044 55.000 0.00 0.00 45.75 4.79
2382 2394 2.619646 GGAAGTAGGAGATCACGAGGAC 59.380 54.545 0.00 0.00 0.00 3.85
2383 2395 2.510382 AGGAAGTAGGAGATCACGAGGA 59.490 50.000 0.00 0.00 0.00 3.71
2384 2396 2.938838 AGGAAGTAGGAGATCACGAGG 58.061 52.381 0.00 0.00 0.00 4.63
2385 2397 3.316868 GGAAGGAAGTAGGAGATCACGAG 59.683 52.174 0.00 0.00 0.00 4.18
2386 2398 3.288964 GGAAGGAAGTAGGAGATCACGA 58.711 50.000 0.00 0.00 0.00 4.35
2387 2399 2.362717 GGGAAGGAAGTAGGAGATCACG 59.637 54.545 0.00 0.00 0.00 4.35
2388 2400 2.701423 GGGGAAGGAAGTAGGAGATCAC 59.299 54.545 0.00 0.00 0.00 3.06
2389 2401 2.690026 CGGGGAAGGAAGTAGGAGATCA 60.690 54.545 0.00 0.00 0.00 2.92
2390 2402 1.964933 CGGGGAAGGAAGTAGGAGATC 59.035 57.143 0.00 0.00 0.00 2.75
2391 2403 2.035331 GCGGGGAAGGAAGTAGGAGAT 61.035 57.143 0.00 0.00 0.00 2.75
2392 2404 0.686769 GCGGGGAAGGAAGTAGGAGA 60.687 60.000 0.00 0.00 0.00 3.71
2393 2405 0.976073 TGCGGGGAAGGAAGTAGGAG 60.976 60.000 0.00 0.00 0.00 3.69
2394 2406 1.079621 TGCGGGGAAGGAAGTAGGA 59.920 57.895 0.00 0.00 0.00 2.94
2395 2407 1.221021 GTGCGGGGAAGGAAGTAGG 59.779 63.158 0.00 0.00 0.00 3.18
2396 2408 1.153628 CGTGCGGGGAAGGAAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
2397 2409 2.975536 CGTGCGGGGAAGGAAGTA 59.024 61.111 0.00 0.00 0.00 2.24
2398 2410 4.699522 GCGTGCGGGGAAGGAAGT 62.700 66.667 0.00 0.00 0.00 3.01
2409 2421 4.933064 GAGATCGGGAGGCGTGCG 62.933 72.222 0.00 0.00 0.00 5.34
2410 2422 2.579684 AAAGAGATCGGGAGGCGTGC 62.580 60.000 0.00 0.00 0.00 5.34
2411 2423 0.528684 GAAAGAGATCGGGAGGCGTG 60.529 60.000 0.00 0.00 0.00 5.34
2412 2424 1.677637 GGAAAGAGATCGGGAGGCGT 61.678 60.000 0.00 0.00 0.00 5.68
2413 2425 1.068250 GGAAAGAGATCGGGAGGCG 59.932 63.158 0.00 0.00 0.00 5.52
2414 2426 0.833949 AAGGAAAGAGATCGGGAGGC 59.166 55.000 0.00 0.00 0.00 4.70
2415 2427 4.559704 CGATAAAGGAAAGAGATCGGGAGG 60.560 50.000 0.00 0.00 36.60 4.30
2416 2428 4.551388 CGATAAAGGAAAGAGATCGGGAG 58.449 47.826 0.00 0.00 36.60 4.30
2417 2429 3.243771 GCGATAAAGGAAAGAGATCGGGA 60.244 47.826 4.92 0.00 39.74 5.14
2418 2430 3.060602 GCGATAAAGGAAAGAGATCGGG 58.939 50.000 4.92 0.00 39.74 5.14
2419 2431 3.060602 GGCGATAAAGGAAAGAGATCGG 58.939 50.000 4.92 0.00 39.74 4.18
2420 2432 3.060602 GGGCGATAAAGGAAAGAGATCG 58.939 50.000 0.00 0.00 41.72 3.69
2421 2433 4.311606 GAGGGCGATAAAGGAAAGAGATC 58.688 47.826 0.00 0.00 0.00 2.75
2422 2434 3.071747 GGAGGGCGATAAAGGAAAGAGAT 59.928 47.826 0.00 0.00 0.00 2.75
2423 2435 2.434702 GGAGGGCGATAAAGGAAAGAGA 59.565 50.000 0.00 0.00 0.00 3.10
2424 2436 2.436173 AGGAGGGCGATAAAGGAAAGAG 59.564 50.000 0.00 0.00 0.00 2.85
2425 2437 2.170607 CAGGAGGGCGATAAAGGAAAGA 59.829 50.000 0.00 0.00 0.00 2.52
2426 2438 2.170607 TCAGGAGGGCGATAAAGGAAAG 59.829 50.000 0.00 0.00 0.00 2.62
2427 2439 2.193127 TCAGGAGGGCGATAAAGGAAA 58.807 47.619 0.00 0.00 0.00 3.13
2428 2440 1.874129 TCAGGAGGGCGATAAAGGAA 58.126 50.000 0.00 0.00 0.00 3.36
2429 2441 2.103153 ATCAGGAGGGCGATAAAGGA 57.897 50.000 0.00 0.00 0.00 3.36
2430 2442 2.938956 AATCAGGAGGGCGATAAAGG 57.061 50.000 0.00 0.00 0.00 3.11
2431 2443 3.142174 GGAAATCAGGAGGGCGATAAAG 58.858 50.000 0.00 0.00 0.00 1.85
2432 2444 2.777692 AGGAAATCAGGAGGGCGATAAA 59.222 45.455 0.00 0.00 0.00 1.40
2433 2445 2.408565 AGGAAATCAGGAGGGCGATAA 58.591 47.619 0.00 0.00 0.00 1.75
2434 2446 2.103153 AGGAAATCAGGAGGGCGATA 57.897 50.000 0.00 0.00 0.00 2.92
2435 2447 1.141858 GAAGGAAATCAGGAGGGCGAT 59.858 52.381 0.00 0.00 0.00 4.58
2436 2448 0.541863 GAAGGAAATCAGGAGGGCGA 59.458 55.000 0.00 0.00 0.00 5.54
2437 2449 0.464554 GGAAGGAAATCAGGAGGGCG 60.465 60.000 0.00 0.00 0.00 6.13
2438 2450 0.922626 AGGAAGGAAATCAGGAGGGC 59.077 55.000 0.00 0.00 0.00 5.19
2439 2451 3.010584 TGAAAGGAAGGAAATCAGGAGGG 59.989 47.826 0.00 0.00 0.00 4.30
2440 2452 4.307032 TGAAAGGAAGGAAATCAGGAGG 57.693 45.455 0.00 0.00 0.00 4.30
2441 2453 6.847421 AATTGAAAGGAAGGAAATCAGGAG 57.153 37.500 0.00 0.00 0.00 3.69
2442 2454 6.663523 GGTAATTGAAAGGAAGGAAATCAGGA 59.336 38.462 0.00 0.00 0.00 3.86
2443 2455 6.437162 TGGTAATTGAAAGGAAGGAAATCAGG 59.563 38.462 0.00 0.00 0.00 3.86
2444 2456 7.177392 ACTGGTAATTGAAAGGAAGGAAATCAG 59.823 37.037 0.00 0.00 0.00 2.90
2445 2457 7.010160 ACTGGTAATTGAAAGGAAGGAAATCA 58.990 34.615 0.00 0.00 0.00 2.57
2446 2458 7.468141 ACTGGTAATTGAAAGGAAGGAAATC 57.532 36.000 0.00 0.00 0.00 2.17
2447 2459 7.855784 AACTGGTAATTGAAAGGAAGGAAAT 57.144 32.000 0.00 0.00 0.00 2.17
2448 2460 7.780745 TGTAACTGGTAATTGAAAGGAAGGAAA 59.219 33.333 0.00 0.00 0.00 3.13
2449 2461 7.291566 TGTAACTGGTAATTGAAAGGAAGGAA 58.708 34.615 0.00 0.00 0.00 3.36
2450 2462 6.843752 TGTAACTGGTAATTGAAAGGAAGGA 58.156 36.000 0.00 0.00 0.00 3.36
2451 2463 6.349363 GCTGTAACTGGTAATTGAAAGGAAGG 60.349 42.308 0.00 0.00 0.00 3.46
2452 2464 6.349363 GGCTGTAACTGGTAATTGAAAGGAAG 60.349 42.308 0.00 0.00 0.00 3.46
2453 2465 5.475564 GGCTGTAACTGGTAATTGAAAGGAA 59.524 40.000 0.00 0.00 0.00 3.36
2454 2466 5.007682 GGCTGTAACTGGTAATTGAAAGGA 58.992 41.667 0.00 0.00 0.00 3.36
2455 2467 4.157840 GGGCTGTAACTGGTAATTGAAAGG 59.842 45.833 0.00 0.00 0.00 3.11
2456 2468 4.157840 GGGGCTGTAACTGGTAATTGAAAG 59.842 45.833 0.00 0.00 0.00 2.62
2457 2469 4.083565 GGGGCTGTAACTGGTAATTGAAA 58.916 43.478 0.00 0.00 0.00 2.69
2458 2470 3.074687 TGGGGCTGTAACTGGTAATTGAA 59.925 43.478 0.00 0.00 0.00 2.69
2459 2471 2.645297 TGGGGCTGTAACTGGTAATTGA 59.355 45.455 0.00 0.00 0.00 2.57
2460 2472 2.752903 GTGGGGCTGTAACTGGTAATTG 59.247 50.000 0.00 0.00 0.00 2.32
2461 2473 2.617021 CGTGGGGCTGTAACTGGTAATT 60.617 50.000 0.00 0.00 0.00 1.40
2462 2474 1.065709 CGTGGGGCTGTAACTGGTAAT 60.066 52.381 0.00 0.00 0.00 1.89
2463 2475 0.322322 CGTGGGGCTGTAACTGGTAA 59.678 55.000 0.00 0.00 0.00 2.85
2464 2476 1.976898 CGTGGGGCTGTAACTGGTA 59.023 57.895 0.00 0.00 0.00 3.25
2465 2477 2.747686 CGTGGGGCTGTAACTGGT 59.252 61.111 0.00 0.00 0.00 4.00
2466 2478 2.746277 GCGTGGGGCTGTAACTGG 60.746 66.667 0.00 0.00 39.11 4.00
2467 2479 3.118454 CGCGTGGGGCTGTAACTG 61.118 66.667 0.00 0.00 40.44 3.16
2477 2489 3.976701 AATCTGGAAGGCGCGTGGG 62.977 63.158 8.43 0.00 0.00 4.61
2478 2490 1.586154 AAAATCTGGAAGGCGCGTGG 61.586 55.000 8.43 0.00 0.00 4.94
2479 2491 0.240945 AAAAATCTGGAAGGCGCGTG 59.759 50.000 8.43 0.00 0.00 5.34
2480 2492 0.240945 CAAAAATCTGGAAGGCGCGT 59.759 50.000 8.43 0.00 0.00 6.01
2481 2493 0.521291 TCAAAAATCTGGAAGGCGCG 59.479 50.000 0.00 0.00 0.00 6.86
2482 2494 1.733718 GCTCAAAAATCTGGAAGGCGC 60.734 52.381 0.00 0.00 0.00 6.53
2483 2495 1.541147 TGCTCAAAAATCTGGAAGGCG 59.459 47.619 0.00 0.00 0.00 5.52
2484 2496 3.665745 TTGCTCAAAAATCTGGAAGGC 57.334 42.857 0.00 0.00 0.00 4.35
2501 2513 6.740411 TCCCAATTCAAGCATTATTTTTGC 57.260 33.333 0.00 0.00 40.45 3.68
2508 2520 9.425248 AGAGATTAAATCCCAATTCAAGCATTA 57.575 29.630 0.00 0.00 0.00 1.90
2509 2521 8.202137 CAGAGATTAAATCCCAATTCAAGCATT 58.798 33.333 0.00 0.00 0.00 3.56
2510 2522 7.201974 CCAGAGATTAAATCCCAATTCAAGCAT 60.202 37.037 0.00 0.00 0.00 3.79
2511 2523 6.097270 CCAGAGATTAAATCCCAATTCAAGCA 59.903 38.462 0.00 0.00 0.00 3.91
2512 2524 6.097412 ACCAGAGATTAAATCCCAATTCAAGC 59.903 38.462 0.00 0.00 0.00 4.01
2513 2525 7.559170 AGACCAGAGATTAAATCCCAATTCAAG 59.441 37.037 0.00 0.00 0.00 3.02
2514 2526 7.340232 CAGACCAGAGATTAAATCCCAATTCAA 59.660 37.037 0.00 0.00 0.00 2.69
2515 2527 6.830324 CAGACCAGAGATTAAATCCCAATTCA 59.170 38.462 0.00 0.00 0.00 2.57
2516 2528 6.238869 GCAGACCAGAGATTAAATCCCAATTC 60.239 42.308 0.00 0.00 0.00 2.17
2517 2529 5.595952 GCAGACCAGAGATTAAATCCCAATT 59.404 40.000 0.00 0.00 0.00 2.32
2518 2530 5.136105 GCAGACCAGAGATTAAATCCCAAT 58.864 41.667 0.00 0.00 0.00 3.16
2519 2531 4.018506 TGCAGACCAGAGATTAAATCCCAA 60.019 41.667 0.00 0.00 0.00 4.12
2520 2532 3.523157 TGCAGACCAGAGATTAAATCCCA 59.477 43.478 0.00 0.00 0.00 4.37
2521 2533 4.133078 CTGCAGACCAGAGATTAAATCCC 58.867 47.826 8.42 0.00 44.64 3.85
2522 2534 4.133078 CCTGCAGACCAGAGATTAAATCC 58.867 47.826 17.39 0.00 44.64 3.01
2523 2535 4.775236 ACCTGCAGACCAGAGATTAAATC 58.225 43.478 17.39 0.00 44.64 2.17
2524 2536 4.851639 ACCTGCAGACCAGAGATTAAAT 57.148 40.909 17.39 0.00 44.64 1.40
2525 2537 5.755409 TTACCTGCAGACCAGAGATTAAA 57.245 39.130 17.39 0.00 44.64 1.52
2526 2538 5.425217 TGATTACCTGCAGACCAGAGATTAA 59.575 40.000 17.39 0.00 44.64 1.40
2527 2539 4.962362 TGATTACCTGCAGACCAGAGATTA 59.038 41.667 17.39 0.00 44.64 1.75
2528 2540 3.776969 TGATTACCTGCAGACCAGAGATT 59.223 43.478 17.39 0.00 44.64 2.40
2529 2541 3.378512 TGATTACCTGCAGACCAGAGAT 58.621 45.455 17.39 0.00 44.64 2.75
2530 2542 2.820178 TGATTACCTGCAGACCAGAGA 58.180 47.619 17.39 0.00 44.64 3.10
2531 2543 3.265791 GTTGATTACCTGCAGACCAGAG 58.734 50.000 17.39 0.00 44.64 3.35
2532 2544 2.353704 CGTTGATTACCTGCAGACCAGA 60.354 50.000 17.39 0.00 44.64 3.86
2533 2545 2.002586 CGTTGATTACCTGCAGACCAG 58.997 52.381 17.39 0.00 41.41 4.00
2534 2546 1.621317 TCGTTGATTACCTGCAGACCA 59.379 47.619 17.39 2.33 0.00 4.02
2535 2547 2.380084 TCGTTGATTACCTGCAGACC 57.620 50.000 17.39 0.00 0.00 3.85
2536 2548 2.673368 CCTTCGTTGATTACCTGCAGAC 59.327 50.000 17.39 1.90 0.00 3.51
2537 2549 2.354704 CCCTTCGTTGATTACCTGCAGA 60.355 50.000 17.39 0.00 0.00 4.26
2538 2550 2.009774 CCCTTCGTTGATTACCTGCAG 58.990 52.381 6.78 6.78 0.00 4.41
2539 2551 1.626321 TCCCTTCGTTGATTACCTGCA 59.374 47.619 0.00 0.00 0.00 4.41
2540 2552 2.280628 CTCCCTTCGTTGATTACCTGC 58.719 52.381 0.00 0.00 0.00 4.85
2541 2553 2.093447 AGCTCCCTTCGTTGATTACCTG 60.093 50.000 0.00 0.00 0.00 4.00
2542 2554 2.188817 AGCTCCCTTCGTTGATTACCT 58.811 47.619 0.00 0.00 0.00 3.08
2543 2555 2.693267 AGCTCCCTTCGTTGATTACC 57.307 50.000 0.00 0.00 0.00 2.85
2544 2556 3.869832 GGTTAGCTCCCTTCGTTGATTAC 59.130 47.826 0.00 0.00 0.00 1.89
2545 2557 3.516300 TGGTTAGCTCCCTTCGTTGATTA 59.484 43.478 0.00 0.00 0.00 1.75
2546 2558 2.304761 TGGTTAGCTCCCTTCGTTGATT 59.695 45.455 0.00 0.00 0.00 2.57
2547 2559 1.906574 TGGTTAGCTCCCTTCGTTGAT 59.093 47.619 0.00 0.00 0.00 2.57
2548 2560 1.344065 TGGTTAGCTCCCTTCGTTGA 58.656 50.000 0.00 0.00 0.00 3.18
2549 2561 2.093447 AGATGGTTAGCTCCCTTCGTTG 60.093 50.000 0.00 0.00 32.79 4.10
2550 2562 2.168728 GAGATGGTTAGCTCCCTTCGTT 59.831 50.000 0.00 0.00 33.25 3.85
2551 2563 1.757699 GAGATGGTTAGCTCCCTTCGT 59.242 52.381 0.00 0.00 33.25 3.85
2552 2564 1.269309 CGAGATGGTTAGCTCCCTTCG 60.269 57.143 0.00 0.06 35.96 3.79
2553 2565 1.539280 GCGAGATGGTTAGCTCCCTTC 60.539 57.143 0.00 0.00 35.96 3.46
2554 2566 0.466124 GCGAGATGGTTAGCTCCCTT 59.534 55.000 0.00 0.00 35.96 3.95
2555 2567 1.403687 GGCGAGATGGTTAGCTCCCT 61.404 60.000 0.00 0.00 35.96 4.20
2556 2568 1.069935 GGCGAGATGGTTAGCTCCC 59.930 63.158 0.00 0.00 35.96 4.30
2557 2569 1.329256 TAGGCGAGATGGTTAGCTCC 58.671 55.000 0.00 0.00 35.96 4.70
2558 2570 2.558795 TCATAGGCGAGATGGTTAGCTC 59.441 50.000 0.00 0.00 36.01 4.09
2559 2571 2.297597 GTCATAGGCGAGATGGTTAGCT 59.702 50.000 0.00 0.00 0.00 3.32
2560 2572 2.035961 TGTCATAGGCGAGATGGTTAGC 59.964 50.000 0.00 0.00 0.00 3.09
2561 2573 3.319405 AGTGTCATAGGCGAGATGGTTAG 59.681 47.826 0.00 0.00 0.00 2.34
2562 2574 3.296854 AGTGTCATAGGCGAGATGGTTA 58.703 45.455 0.00 0.00 0.00 2.85
2563 2575 2.101582 GAGTGTCATAGGCGAGATGGTT 59.898 50.000 0.00 0.00 0.00 3.67
2564 2576 1.683917 GAGTGTCATAGGCGAGATGGT 59.316 52.381 0.00 0.00 0.00 3.55
2565 2577 1.683385 TGAGTGTCATAGGCGAGATGG 59.317 52.381 0.00 0.00 0.00 3.51
2566 2578 3.657015 ATGAGTGTCATAGGCGAGATG 57.343 47.619 0.00 0.00 34.88 2.90
2567 2579 3.386078 ACAATGAGTGTCATAGGCGAGAT 59.614 43.478 0.00 0.00 35.76 2.75
2568 2580 2.760650 ACAATGAGTGTCATAGGCGAGA 59.239 45.455 0.00 0.00 35.76 4.04
2569 2581 3.170791 ACAATGAGTGTCATAGGCGAG 57.829 47.619 0.00 0.00 35.76 5.03
2570 2582 3.056179 TCAACAATGAGTGTCATAGGCGA 60.056 43.478 0.00 0.00 40.60 5.54
2571 2583 3.261580 TCAACAATGAGTGTCATAGGCG 58.738 45.455 0.00 0.00 40.60 5.52
2572 2584 4.455533 TGTTCAACAATGAGTGTCATAGGC 59.544 41.667 0.00 0.00 40.60 3.93
2573 2585 6.558771 TTGTTCAACAATGAGTGTCATAGG 57.441 37.500 0.00 0.00 40.60 2.57
2574 2586 6.072838 AGCTTGTTCAACAATGAGTGTCATAG 60.073 38.462 2.71 0.00 40.60 2.23
2575 2587 5.764686 AGCTTGTTCAACAATGAGTGTCATA 59.235 36.000 2.71 0.00 40.60 2.15
2576 2588 4.581824 AGCTTGTTCAACAATGAGTGTCAT 59.418 37.500 2.71 0.00 40.60 3.06
2577 2589 3.947196 AGCTTGTTCAACAATGAGTGTCA 59.053 39.130 2.71 0.00 40.60 3.58
2578 2590 4.558538 AGCTTGTTCAACAATGAGTGTC 57.441 40.909 2.71 0.00 40.60 3.67
2579 2591 5.822519 TCTTAGCTTGTTCAACAATGAGTGT 59.177 36.000 2.71 0.00 44.64 3.55
2580 2592 6.304356 TCTTAGCTTGTTCAACAATGAGTG 57.696 37.500 2.71 0.00 37.48 3.51
2581 2593 6.942532 TTCTTAGCTTGTTCAACAATGAGT 57.057 33.333 2.71 0.00 37.48 3.41
2582 2594 8.633075 TTTTTCTTAGCTTGTTCAACAATGAG 57.367 30.769 2.71 0.00 37.48 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.