Multiple sequence alignment - TraesCS1A01G303200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G303200 chr1A 100.000 2621 0 0 1 2621 496644254 496646874 0.000000e+00 4841.0
1 TraesCS1A01G303200 chr1A 86.231 581 68 7 2039 2615 312608131 312608703 1.030000e-173 619.0
2 TraesCS1A01G303200 chr1D 92.149 1452 77 27 511 1940 400358165 400359601 0.000000e+00 2015.0
3 TraesCS1A01G303200 chr1D 89.381 226 13 1 302 516 400357760 400357985 9.240000e-70 274.0
4 TraesCS1A01G303200 chr1D 78.571 126 23 3 1863 1985 438318940 438319064 2.160000e-11 80.5
5 TraesCS1A01G303200 chr1B 93.876 1192 48 7 511 1678 537414892 537416082 0.000000e+00 1773.0
6 TraesCS1A01G303200 chr1B 92.166 217 13 3 302 516 537409183 537409397 1.180000e-78 303.0
7 TraesCS1A01G303200 chr1B 93.956 182 6 3 1659 1839 537416093 537416270 1.200000e-68 270.0
8 TraesCS1A01G303200 chr6D 87.158 584 66 7 2036 2615 435932795 435933373 0.000000e+00 654.0
9 TraesCS1A01G303200 chr6D 82.243 107 15 4 1909 2013 263045242 263045138 3.590000e-14 89.8
10 TraesCS1A01G303200 chr6A 86.426 582 72 4 2036 2615 582771898 582772474 4.760000e-177 630.0
11 TraesCS1A01G303200 chr6A 86.076 79 9 2 1885 1962 176992625 176992702 1.670000e-12 84.2
12 TraesCS1A01G303200 chr5B 84.983 586 71 13 2039 2621 124633393 124632822 1.750000e-161 579.0
13 TraesCS1A01G303200 chr3A 83.735 498 66 14 2124 2615 710084960 710085448 8.550000e-125 457.0
14 TraesCS1A01G303200 chr4D 84.941 425 50 9 2195 2615 85863000 85862586 4.030000e-113 418.0
15 TraesCS1A01G303200 chr4D 84.118 170 19 6 2125 2292 20565773 20565936 9.710000e-35 158.0
16 TraesCS1A01G303200 chr4D 92.105 76 6 0 2124 2199 85876200 85876125 9.920000e-20 108.0
17 TraesCS1A01G303200 chr4A 84.393 173 19 4 2125 2295 581143159 581142993 2.090000e-36 163.0
18 TraesCS1A01G303200 chr4B 83.951 162 20 2 2125 2284 32497857 32498014 1.620000e-32 150.0
19 TraesCS1A01G303200 chr2D 81.982 111 18 2 1902 2010 628612525 628612415 2.780000e-15 93.5
20 TraesCS1A01G303200 chr7D 87.273 55 6 1 1909 1962 182992707 182992761 7.830000e-06 62.1
21 TraesCS1A01G303200 chr7D 100.000 29 0 0 1935 1963 554318712 554318684 1.000000e-03 54.7
22 TraesCS1A01G303200 chr7B 79.348 92 11 7 1876 1962 600595317 600595405 1.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G303200 chr1A 496644254 496646874 2620 False 4841.0 4841 100.000 1 2621 1 chr1A.!!$F2 2620
1 TraesCS1A01G303200 chr1A 312608131 312608703 572 False 619.0 619 86.231 2039 2615 1 chr1A.!!$F1 576
2 TraesCS1A01G303200 chr1D 400357760 400359601 1841 False 1144.5 2015 90.765 302 1940 2 chr1D.!!$F2 1638
3 TraesCS1A01G303200 chr1B 537414892 537416270 1378 False 1021.5 1773 93.916 511 1839 2 chr1B.!!$F2 1328
4 TraesCS1A01G303200 chr6D 435932795 435933373 578 False 654.0 654 87.158 2036 2615 1 chr6D.!!$F1 579
5 TraesCS1A01G303200 chr6A 582771898 582772474 576 False 630.0 630 86.426 2036 2615 1 chr6A.!!$F2 579
6 TraesCS1A01G303200 chr5B 124632822 124633393 571 True 579.0 579 84.983 2039 2621 1 chr5B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.031212 AATTTAGGGGCATGGTGGGG 60.031 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2281 0.106708 ACGCGGCAATATCCTGACAT 59.893 50.0 12.47 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.729595 CTTCAATTAGCCCGTAAAACCAC 58.270 43.478 0.00 0.00 0.00 4.16
23 24 3.083293 TCAATTAGCCCGTAAAACCACC 58.917 45.455 0.00 0.00 0.00 4.61
24 25 1.741528 ATTAGCCCGTAAAACCACCG 58.258 50.000 0.00 0.00 0.00 4.94
25 26 0.396060 TTAGCCCGTAAAACCACCGT 59.604 50.000 0.00 0.00 0.00 4.83
26 27 0.320596 TAGCCCGTAAAACCACCGTG 60.321 55.000 0.00 0.00 0.00 4.94
27 28 1.597578 GCCCGTAAAACCACCGTGA 60.598 57.895 0.00 0.00 0.00 4.35
28 29 1.165284 GCCCGTAAAACCACCGTGAA 61.165 55.000 0.00 0.00 0.00 3.18
29 30 0.869730 CCCGTAAAACCACCGTGAAG 59.130 55.000 0.00 0.00 0.00 3.02
30 31 1.585297 CCGTAAAACCACCGTGAAGT 58.415 50.000 0.00 0.00 0.00 3.01
31 32 1.528161 CCGTAAAACCACCGTGAAGTC 59.472 52.381 0.00 0.00 0.00 3.01
32 33 2.476821 CGTAAAACCACCGTGAAGTCT 58.523 47.619 0.00 0.00 0.00 3.24
33 34 2.473984 CGTAAAACCACCGTGAAGTCTC 59.526 50.000 0.00 0.00 0.00 3.36
34 35 1.963172 AAAACCACCGTGAAGTCTCC 58.037 50.000 0.00 0.00 0.00 3.71
35 36 0.834612 AAACCACCGTGAAGTCTCCA 59.165 50.000 0.00 0.00 0.00 3.86
36 37 1.056660 AACCACCGTGAAGTCTCCAT 58.943 50.000 0.00 0.00 0.00 3.41
37 38 0.321671 ACCACCGTGAAGTCTCCATG 59.678 55.000 0.00 0.00 0.00 3.66
38 39 1.021390 CCACCGTGAAGTCTCCATGC 61.021 60.000 0.00 0.00 0.00 4.06
39 40 1.079819 ACCGTGAAGTCTCCATGCG 60.080 57.895 0.00 0.00 0.00 4.73
40 41 1.079819 CCGTGAAGTCTCCATGCGT 60.080 57.895 0.00 0.00 0.00 5.24
41 42 1.354337 CCGTGAAGTCTCCATGCGTG 61.354 60.000 0.00 0.00 0.00 5.34
42 43 0.667487 CGTGAAGTCTCCATGCGTGT 60.667 55.000 4.96 0.00 0.00 4.49
43 44 1.402325 CGTGAAGTCTCCATGCGTGTA 60.402 52.381 4.96 0.00 0.00 2.90
44 45 2.263077 GTGAAGTCTCCATGCGTGTAG 58.737 52.381 4.96 0.00 0.00 2.74
60 61 4.822107 CGTGTAGCATTACTCCATTTTCG 58.178 43.478 0.00 0.00 0.00 3.46
61 62 4.260212 CGTGTAGCATTACTCCATTTTCGG 60.260 45.833 0.00 0.00 0.00 4.30
62 63 3.625764 TGTAGCATTACTCCATTTTCGGC 59.374 43.478 0.00 0.00 0.00 5.54
63 64 1.670811 AGCATTACTCCATTTTCGGCG 59.329 47.619 0.00 0.00 0.00 6.46
64 65 1.859998 GCATTACTCCATTTTCGGCGC 60.860 52.381 0.00 0.00 0.00 6.53
65 66 1.021968 ATTACTCCATTTTCGGCGCC 58.978 50.000 19.07 19.07 0.00 6.53
66 67 1.363145 TTACTCCATTTTCGGCGCCG 61.363 55.000 42.13 42.13 41.35 6.46
67 68 3.876198 CTCCATTTTCGGCGCCGG 61.876 66.667 44.95 29.44 40.25 6.13
68 69 4.396271 TCCATTTTCGGCGCCGGA 62.396 61.111 44.95 38.52 40.25 5.14
69 70 3.876198 CCATTTTCGGCGCCGGAG 61.876 66.667 44.95 27.16 40.25 4.63
70 71 3.124921 CATTTTCGGCGCCGGAGT 61.125 61.111 44.95 28.17 40.25 3.85
71 72 3.124921 ATTTTCGGCGCCGGAGTG 61.125 61.111 44.95 20.64 40.25 3.51
81 82 4.020617 CCGGAGTGCTCAAGGGCA 62.021 66.667 0.00 0.00 40.15 5.36
82 83 2.032528 CGGAGTGCTCAAGGGCAA 59.967 61.111 0.00 0.00 44.18 4.52
83 84 2.328099 CGGAGTGCTCAAGGGCAAC 61.328 63.158 0.00 0.00 44.18 4.17
84 85 1.228245 GGAGTGCTCAAGGGCAACA 60.228 57.895 0.00 0.00 44.18 3.33
85 86 0.823356 GGAGTGCTCAAGGGCAACAA 60.823 55.000 0.00 0.00 44.18 2.83
86 87 1.251251 GAGTGCTCAAGGGCAACAAT 58.749 50.000 0.00 0.00 44.18 2.71
87 88 0.963962 AGTGCTCAAGGGCAACAATG 59.036 50.000 0.00 0.00 44.18 2.82
88 89 0.675633 GTGCTCAAGGGCAACAATGT 59.324 50.000 0.00 0.00 44.18 2.71
89 90 1.069049 GTGCTCAAGGGCAACAATGTT 59.931 47.619 0.00 0.00 44.18 2.71
90 91 1.761784 TGCTCAAGGGCAACAATGTTT 59.238 42.857 0.00 0.00 39.43 2.83
91 92 2.137523 GCTCAAGGGCAACAATGTTTG 58.862 47.619 0.00 0.00 39.74 2.93
99 100 2.704725 CAACAATGTTTGCTAGGCGT 57.295 45.000 0.00 0.00 0.00 5.68
100 101 2.318578 CAACAATGTTTGCTAGGCGTG 58.681 47.619 0.00 0.00 0.00 5.34
101 102 0.881118 ACAATGTTTGCTAGGCGTGG 59.119 50.000 0.00 0.00 0.00 4.94
102 103 0.456653 CAATGTTTGCTAGGCGTGGC 60.457 55.000 7.91 7.91 0.00 5.01
103 104 0.893270 AATGTTTGCTAGGCGTGGCA 60.893 50.000 13.78 13.78 38.62 4.92
104 105 1.308069 ATGTTTGCTAGGCGTGGCAG 61.308 55.000 16.98 0.00 41.81 4.85
105 106 3.055719 TTTGCTAGGCGTGGCAGC 61.056 61.111 16.98 5.16 41.81 5.25
135 136 1.195900 TCGCGCCCGAATTTATATTGC 59.804 47.619 0.00 0.00 41.17 3.56
136 137 1.727857 CGCGCCCGAATTTATATTGCC 60.728 52.381 0.00 0.00 36.29 4.52
137 138 1.268352 GCGCCCGAATTTATATTGCCA 59.732 47.619 0.00 0.00 0.00 4.92
138 139 2.287909 GCGCCCGAATTTATATTGCCAA 60.288 45.455 0.00 0.00 0.00 4.52
139 140 3.797184 GCGCCCGAATTTATATTGCCAAA 60.797 43.478 0.00 0.00 0.00 3.28
140 141 4.555262 CGCCCGAATTTATATTGCCAAAT 58.445 39.130 0.00 0.00 0.00 2.32
141 142 4.987912 CGCCCGAATTTATATTGCCAAATT 59.012 37.500 0.00 0.00 37.12 1.82
142 143 5.465056 CGCCCGAATTTATATTGCCAAATTT 59.535 36.000 0.00 0.00 35.14 1.82
143 144 6.642950 CGCCCGAATTTATATTGCCAAATTTA 59.357 34.615 0.00 0.00 35.14 1.40
144 145 7.148820 CGCCCGAATTTATATTGCCAAATTTAG 60.149 37.037 0.00 0.00 35.14 1.85
145 146 7.117667 GCCCGAATTTATATTGCCAAATTTAGG 59.882 37.037 0.00 0.00 35.14 2.69
146 147 7.602265 CCCGAATTTATATTGCCAAATTTAGGG 59.398 37.037 14.67 14.67 41.07 3.53
147 148 7.602265 CCGAATTTATATTGCCAAATTTAGGGG 59.398 37.037 8.23 0.00 35.14 4.79
153 154 1.203237 GCCAAATTTAGGGGCATGGT 58.797 50.000 12.00 0.00 46.92 3.55
154 155 1.134431 GCCAAATTTAGGGGCATGGTG 60.134 52.381 12.00 0.00 46.92 4.17
155 156 1.485895 CCAAATTTAGGGGCATGGTGG 59.514 52.381 0.00 0.00 0.00 4.61
156 157 1.485895 CAAATTTAGGGGCATGGTGGG 59.514 52.381 0.00 0.00 0.00 4.61
157 158 0.031212 AATTTAGGGGCATGGTGGGG 60.031 55.000 0.00 0.00 0.00 4.96
158 159 2.603933 ATTTAGGGGCATGGTGGGGC 62.604 60.000 0.00 0.00 0.00 5.80
159 160 4.777546 TAGGGGCATGGTGGGGCT 62.778 66.667 0.00 0.00 0.00 5.19
162 163 4.147587 GGGCATGGTGGGGCTCAT 62.148 66.667 0.00 0.00 0.00 2.90
163 164 2.836360 GGCATGGTGGGGCTCATG 60.836 66.667 0.00 0.00 42.47 3.07
164 165 2.836360 GCATGGTGGGGCTCATGG 60.836 66.667 0.00 0.00 40.59 3.66
165 166 2.685366 CATGGTGGGGCTCATGGT 59.315 61.111 0.00 0.00 37.63 3.55
166 167 1.454479 CATGGTGGGGCTCATGGTC 60.454 63.158 0.00 0.00 37.63 4.02
167 168 1.930133 ATGGTGGGGCTCATGGTCA 60.930 57.895 0.00 0.00 0.00 4.02
168 169 2.044946 GGTGGGGCTCATGGTCAC 60.045 66.667 0.00 0.00 0.00 3.67
169 170 2.044946 GTGGGGCTCATGGTCACC 60.045 66.667 0.00 0.00 0.00 4.02
170 171 2.531428 TGGGGCTCATGGTCACCA 60.531 61.111 0.00 0.00 38.19 4.17
171 172 2.044946 GGGGCTCATGGTCACCAC 60.045 66.667 0.00 0.00 35.80 4.16
172 173 2.436646 GGGCTCATGGTCACCACG 60.437 66.667 0.00 0.00 35.80 4.94
173 174 2.436646 GGCTCATGGTCACCACGG 60.437 66.667 0.00 0.00 35.80 4.94
174 175 3.127533 GCTCATGGTCACCACGGC 61.128 66.667 0.00 0.00 35.80 5.68
175 176 2.815211 CTCATGGTCACCACGGCG 60.815 66.667 0.00 4.80 35.80 6.46
176 177 3.295304 CTCATGGTCACCACGGCGA 62.295 63.158 16.62 0.00 35.80 5.54
177 178 2.358125 CATGGTCACCACGGCGAA 60.358 61.111 16.62 0.00 35.80 4.70
178 179 2.358247 ATGGTCACCACGGCGAAC 60.358 61.111 16.62 3.20 35.80 3.95
179 180 3.894547 ATGGTCACCACGGCGAACC 62.895 63.158 16.62 13.00 35.80 3.62
211 212 4.176752 GGGAGGCCGCCTTAGGTG 62.177 72.222 25.91 4.57 31.76 4.00
223 224 4.748892 CGCCTTAGGTGGATGTATAGATG 58.251 47.826 3.47 0.00 0.00 2.90
224 225 4.508662 GCCTTAGGTGGATGTATAGATGC 58.491 47.826 0.00 0.00 0.00 3.91
225 226 4.223923 GCCTTAGGTGGATGTATAGATGCT 59.776 45.833 0.00 0.00 0.00 3.79
226 227 5.728471 CCTTAGGTGGATGTATAGATGCTG 58.272 45.833 3.07 0.00 0.00 4.41
227 228 5.481824 CCTTAGGTGGATGTATAGATGCTGA 59.518 44.000 3.07 0.00 0.00 4.26
228 229 4.881019 AGGTGGATGTATAGATGCTGAC 57.119 45.455 3.07 0.00 0.00 3.51
229 230 4.226384 AGGTGGATGTATAGATGCTGACA 58.774 43.478 3.07 0.00 0.00 3.58
230 231 4.842948 AGGTGGATGTATAGATGCTGACAT 59.157 41.667 3.07 0.00 39.98 3.06
241 242 4.005487 GATGCTGACATCCATAGCTTCT 57.995 45.455 0.00 0.00 45.94 2.85
242 243 3.920231 TGCTGACATCCATAGCTTCTT 57.080 42.857 0.00 0.00 38.25 2.52
243 244 3.801698 TGCTGACATCCATAGCTTCTTC 58.198 45.455 0.00 0.00 38.25 2.87
244 245 3.453717 TGCTGACATCCATAGCTTCTTCT 59.546 43.478 0.00 0.00 38.25 2.85
245 246 4.080695 TGCTGACATCCATAGCTTCTTCTT 60.081 41.667 0.00 0.00 38.25 2.52
246 247 4.880696 GCTGACATCCATAGCTTCTTCTTT 59.119 41.667 0.00 0.00 34.70 2.52
247 248 5.220815 GCTGACATCCATAGCTTCTTCTTTG 60.221 44.000 0.00 0.00 34.70 2.77
248 249 6.053632 TGACATCCATAGCTTCTTCTTTGA 57.946 37.500 0.00 0.00 0.00 2.69
249 250 5.877012 TGACATCCATAGCTTCTTCTTTGAC 59.123 40.000 0.00 0.00 0.00 3.18
250 251 4.872691 ACATCCATAGCTTCTTCTTTGACG 59.127 41.667 0.00 0.00 0.00 4.35
251 252 4.537135 TCCATAGCTTCTTCTTTGACGT 57.463 40.909 0.00 0.00 0.00 4.34
252 253 4.495422 TCCATAGCTTCTTCTTTGACGTC 58.505 43.478 9.11 9.11 0.00 4.34
253 254 4.021456 TCCATAGCTTCTTCTTTGACGTCA 60.021 41.667 15.76 15.76 0.00 4.35
254 255 4.872691 CCATAGCTTCTTCTTTGACGTCAT 59.127 41.667 20.80 2.39 0.00 3.06
255 256 5.006165 CCATAGCTTCTTCTTTGACGTCATC 59.994 44.000 20.80 0.00 0.00 2.92
256 257 3.995199 AGCTTCTTCTTTGACGTCATCA 58.005 40.909 20.80 8.45 34.65 3.07
257 258 3.743396 AGCTTCTTCTTTGACGTCATCAC 59.257 43.478 20.80 2.02 36.92 3.06
258 259 3.120511 GCTTCTTCTTTGACGTCATCACC 60.121 47.826 20.80 0.00 36.92 4.02
259 260 3.040147 TCTTCTTTGACGTCATCACCC 57.960 47.619 20.80 0.00 36.92 4.61
260 261 1.726791 CTTCTTTGACGTCATCACCCG 59.273 52.381 20.80 3.08 36.92 5.28
261 262 0.037697 TCTTTGACGTCATCACCCGG 60.038 55.000 20.80 0.00 36.92 5.73
262 263 1.004320 TTTGACGTCATCACCCGGG 60.004 57.895 22.25 22.25 36.92 5.73
263 264 3.599285 TTGACGTCATCACCCGGGC 62.599 63.158 24.08 0.89 36.92 6.13
264 265 4.832608 GACGTCATCACCCGGGCC 62.833 72.222 24.08 0.00 0.00 5.80
266 267 4.838152 CGTCATCACCCGGGCCTG 62.838 72.222 24.08 15.99 0.00 4.85
267 268 3.717294 GTCATCACCCGGGCCTGT 61.717 66.667 24.08 0.00 0.00 4.00
268 269 2.933287 TCATCACCCGGGCCTGTT 60.933 61.111 24.08 4.36 0.00 3.16
269 270 2.035626 CATCACCCGGGCCTGTTT 59.964 61.111 24.08 0.00 0.00 2.83
270 271 2.046285 CATCACCCGGGCCTGTTTC 61.046 63.158 24.08 0.00 0.00 2.78
271 272 3.622060 ATCACCCGGGCCTGTTTCG 62.622 63.158 24.08 0.29 0.00 3.46
274 275 4.778143 CCCGGGCCTGTTTCGGAG 62.778 72.222 17.79 5.42 45.96 4.63
275 276 4.778143 CCGGGCCTGTTTCGGAGG 62.778 72.222 11.58 0.00 45.96 4.30
276 277 3.702048 CGGGCCTGTTTCGGAGGA 61.702 66.667 2.29 0.00 31.48 3.71
277 278 2.754375 GGGCCTGTTTCGGAGGAA 59.246 61.111 0.84 0.00 31.48 3.36
278 279 1.074248 GGGCCTGTTTCGGAGGAAA 59.926 57.895 0.84 0.00 39.77 3.13
288 289 2.669240 GGAGGAAACCACTCCGGG 59.331 66.667 0.00 0.00 44.50 5.73
289 290 2.046217 GAGGAAACCACTCCGGGC 60.046 66.667 0.00 0.00 40.75 6.13
290 291 3.623703 GAGGAAACCACTCCGGGCC 62.624 68.421 0.00 0.00 40.75 5.80
291 292 4.735358 GGAAACCACTCCGGGCCC 62.735 72.222 13.57 13.57 40.22 5.80
292 293 3.961414 GAAACCACTCCGGGCCCA 61.961 66.667 24.92 0.93 40.22 5.36
293 294 3.501040 GAAACCACTCCGGGCCCAA 62.501 63.158 24.92 8.34 40.22 4.12
294 295 2.987355 GAAACCACTCCGGGCCCAAA 62.987 60.000 24.92 7.90 40.22 3.28
295 296 2.380571 AAACCACTCCGGGCCCAAAT 62.381 55.000 24.92 0.00 40.22 2.32
296 297 2.440247 CCACTCCGGGCCCAAATC 60.440 66.667 24.92 0.00 0.00 2.17
297 298 2.824041 CACTCCGGGCCCAAATCG 60.824 66.667 24.92 7.03 0.00 3.34
298 299 4.109675 ACTCCGGGCCCAAATCGG 62.110 66.667 24.92 17.19 44.59 4.18
300 301 3.792736 TCCGGGCCCAAATCGGAG 61.793 66.667 24.92 1.64 46.48 4.63
304 305 4.440829 GGCCCAAATCGGAGCCCA 62.441 66.667 0.00 0.00 42.40 5.36
305 306 2.830370 GCCCAAATCGGAGCCCAG 60.830 66.667 0.00 0.00 36.56 4.45
306 307 2.830370 CCCAAATCGGAGCCCAGC 60.830 66.667 0.00 0.00 36.56 4.85
449 461 5.825151 TGCTTCCCCCTTTTGTTAAAATTTG 59.175 36.000 0.00 0.00 0.00 2.32
457 469 7.988028 CCCCTTTTGTTAAAATTTGTGAACCTA 59.012 33.333 0.00 0.00 0.00 3.08
468 480 8.674263 AAATTTGTGAACCTATTTCATTTGCA 57.326 26.923 0.00 0.00 46.14 4.08
471 483 6.343716 TGTGAACCTATTTCATTTGCATGT 57.656 33.333 0.00 0.00 46.14 3.21
537 734 2.695127 TGGTCAAGTTTACACCGTGT 57.305 45.000 9.58 9.58 32.27 4.49
593 793 8.031864 CCGATAGATGATGCATAGACTAAAAGT 58.968 37.037 0.00 0.00 39.76 2.66
599 799 8.894768 ATGATGCATAGACTAAAAGTAGAACC 57.105 34.615 0.00 0.00 0.00 3.62
670 870 3.997021 AGTGATGGTTTTGTAAGAGAGCG 59.003 43.478 0.00 0.00 0.00 5.03
724 927 7.276658 CGTGAATTCCTAGTATCATCTTATGCC 59.723 40.741 2.27 0.00 0.00 4.40
792 1005 2.685380 CGGTCTCCCCTGCTTCCT 60.685 66.667 0.00 0.00 0.00 3.36
793 1006 1.381327 CGGTCTCCCCTGCTTCCTA 60.381 63.158 0.00 0.00 0.00 2.94
890 1106 3.005897 TCCTCTTACAAGTCAGTGAGTGC 59.994 47.826 0.00 0.00 0.00 4.40
891 1107 3.243873 CCTCTTACAAGTCAGTGAGTGCA 60.244 47.826 0.00 0.00 0.00 4.57
892 1108 3.982475 TCTTACAAGTCAGTGAGTGCAG 58.018 45.455 0.00 0.00 0.00 4.41
950 1203 1.227409 TTTTCGCGGCACTCTCACA 60.227 52.632 6.13 0.00 0.00 3.58
951 1204 1.495584 TTTTCGCGGCACTCTCACAC 61.496 55.000 6.13 0.00 0.00 3.82
1074 1341 1.381928 CCATCATCTGCGCCAGCTTT 61.382 55.000 4.18 0.00 45.42 3.51
1680 1981 1.136690 ACGCACGTCATGTAGTTGTG 58.863 50.000 0.00 0.00 0.00 3.33
1687 1988 1.126846 GTCATGTAGTTGTGCTCGTGC 59.873 52.381 1.71 1.71 40.20 5.34
1752 2053 3.134623 TGACTCCCGATTTGTAGATGCAT 59.865 43.478 0.00 0.00 0.00 3.96
1793 2094 9.204570 CTGTATGGGCTTGTGTTTATATAGTAC 57.795 37.037 0.00 0.00 0.00 2.73
1794 2095 7.868922 TGTATGGGCTTGTGTTTATATAGTACG 59.131 37.037 0.00 0.00 0.00 3.67
1795 2096 6.224665 TGGGCTTGTGTTTATATAGTACGT 57.775 37.500 0.00 0.00 0.00 3.57
1796 2097 7.345422 TGGGCTTGTGTTTATATAGTACGTA 57.655 36.000 0.00 0.00 0.00 3.57
1840 2141 7.095102 GCATATTCTGAAGGCATTTTGTTTTGT 60.095 33.333 0.00 0.00 0.00 2.83
1899 2201 9.011095 CAGATTTATAGCCATGACAAATCAGAT 57.989 33.333 0.00 0.00 38.57 2.90
1943 2246 4.826274 TGCAGAGGATAGCAAGTTTAGT 57.174 40.909 0.00 0.00 37.90 2.24
1944 2247 5.165961 TGCAGAGGATAGCAAGTTTAGTT 57.834 39.130 0.00 0.00 37.90 2.24
1945 2248 4.937620 TGCAGAGGATAGCAAGTTTAGTTG 59.062 41.667 0.00 0.00 37.90 3.16
1946 2249 4.333926 GCAGAGGATAGCAAGTTTAGTTGG 59.666 45.833 0.00 0.00 0.00 3.77
1947 2250 4.333926 CAGAGGATAGCAAGTTTAGTTGGC 59.666 45.833 0.00 0.00 0.00 4.52
1948 2251 4.019321 AGAGGATAGCAAGTTTAGTTGGCA 60.019 41.667 0.00 0.00 0.00 4.92
1949 2252 4.662278 AGGATAGCAAGTTTAGTTGGCAA 58.338 39.130 0.00 0.00 0.00 4.52
1950 2253 4.702131 AGGATAGCAAGTTTAGTTGGCAAG 59.298 41.667 0.00 0.00 0.00 4.01
1951 2254 2.800881 AGCAAGTTTAGTTGGCAAGC 57.199 45.000 0.00 0.00 0.00 4.01
1952 2255 2.031120 AGCAAGTTTAGTTGGCAAGCA 58.969 42.857 0.00 0.00 0.00 3.91
1953 2256 2.629617 AGCAAGTTTAGTTGGCAAGCAT 59.370 40.909 0.00 0.00 0.00 3.79
1954 2257 2.733026 GCAAGTTTAGTTGGCAAGCATG 59.267 45.455 0.00 0.00 0.00 4.06
1955 2258 3.552684 GCAAGTTTAGTTGGCAAGCATGA 60.553 43.478 0.00 0.00 0.00 3.07
1956 2259 3.923017 AGTTTAGTTGGCAAGCATGAC 57.077 42.857 0.00 0.00 34.00 3.06
1957 2260 3.221771 AGTTTAGTTGGCAAGCATGACA 58.778 40.909 0.00 0.00 44.97 3.58
1966 2269 5.664294 TGGCAAGCATGACAAATCTATTT 57.336 34.783 0.00 0.00 43.21 1.40
1967 2270 5.653507 TGGCAAGCATGACAAATCTATTTC 58.346 37.500 0.00 0.00 43.21 2.17
1968 2271 5.185442 TGGCAAGCATGACAAATCTATTTCA 59.815 36.000 0.00 0.00 43.21 2.69
1969 2272 6.101332 GGCAAGCATGACAAATCTATTTCAA 58.899 36.000 0.00 0.00 33.41 2.69
1970 2273 6.759827 GGCAAGCATGACAAATCTATTTCAAT 59.240 34.615 0.00 0.00 33.41 2.57
1971 2274 7.279313 GGCAAGCATGACAAATCTATTTCAATT 59.721 33.333 0.00 0.00 33.41 2.32
1972 2275 8.662141 GCAAGCATGACAAATCTATTTCAATTT 58.338 29.630 0.00 0.00 0.00 1.82
1994 2297 9.912634 AATTTATTTTATGTCAGGATATTGCCG 57.087 29.630 0.00 0.00 0.00 5.69
1995 2298 4.829064 TTTTATGTCAGGATATTGCCGC 57.171 40.909 0.00 0.00 0.00 6.53
1996 2299 2.078849 TATGTCAGGATATTGCCGCG 57.921 50.000 0.00 0.00 0.00 6.46
1997 2300 0.106708 ATGTCAGGATATTGCCGCGT 59.893 50.000 4.92 0.00 0.00 6.01
1998 2301 0.107897 TGTCAGGATATTGCCGCGTT 60.108 50.000 4.92 0.00 0.00 4.84
1999 2302 1.014352 GTCAGGATATTGCCGCGTTT 58.986 50.000 4.92 0.00 0.00 3.60
2000 2303 2.206750 GTCAGGATATTGCCGCGTTTA 58.793 47.619 4.92 0.00 0.00 2.01
2001 2304 2.033151 GTCAGGATATTGCCGCGTTTAC 60.033 50.000 4.92 0.00 0.00 2.01
2002 2305 1.937223 CAGGATATTGCCGCGTTTACA 59.063 47.619 4.92 0.00 0.00 2.41
2003 2306 2.353269 CAGGATATTGCCGCGTTTACAA 59.647 45.455 4.92 4.37 0.00 2.41
2004 2307 3.011119 AGGATATTGCCGCGTTTACAAA 58.989 40.909 4.92 0.00 0.00 2.83
2005 2308 3.103007 GGATATTGCCGCGTTTACAAAC 58.897 45.455 4.92 0.00 35.59 2.93
2006 2309 3.181504 GGATATTGCCGCGTTTACAAACT 60.182 43.478 4.92 0.00 36.77 2.66
2007 2310 4.034279 GGATATTGCCGCGTTTACAAACTA 59.966 41.667 4.92 0.00 36.77 2.24
2008 2311 3.900388 ATTGCCGCGTTTACAAACTAA 57.100 38.095 4.92 0.00 36.77 2.24
2009 2312 3.687572 TTGCCGCGTTTACAAACTAAA 57.312 38.095 4.92 0.00 36.77 1.85
2010 2313 3.687572 TGCCGCGTTTACAAACTAAAA 57.312 38.095 4.92 0.00 36.77 1.52
2011 2314 4.226113 TGCCGCGTTTACAAACTAAAAT 57.774 36.364 4.92 0.00 36.77 1.82
2012 2315 4.608951 TGCCGCGTTTACAAACTAAAATT 58.391 34.783 4.92 0.00 36.77 1.82
2013 2316 5.041940 TGCCGCGTTTACAAACTAAAATTT 58.958 33.333 4.92 0.00 36.77 1.82
2014 2317 5.519206 TGCCGCGTTTACAAACTAAAATTTT 59.481 32.000 8.75 8.75 36.77 1.82
2015 2318 6.060150 GCCGCGTTTACAAACTAAAATTTTC 58.940 36.000 6.72 0.00 36.77 2.29
2016 2319 6.291690 GCCGCGTTTACAAACTAAAATTTTCA 60.292 34.615 6.72 0.00 36.77 2.69
2017 2320 7.567952 GCCGCGTTTACAAACTAAAATTTTCAT 60.568 33.333 6.72 0.00 36.77 2.57
2018 2321 8.270111 CCGCGTTTACAAACTAAAATTTTCATT 58.730 29.630 6.72 0.25 36.77 2.57
2019 2322 9.285387 CGCGTTTACAAACTAAAATTTTCATTC 57.715 29.630 6.72 0.00 36.77 2.67
2020 2323 9.575702 GCGTTTACAAACTAAAATTTTCATTCC 57.424 29.630 6.72 0.00 36.77 3.01
2025 2328 8.432110 ACAAACTAAAATTTTCATTCCCACAC 57.568 30.769 6.72 0.00 0.00 3.82
2026 2329 7.497579 ACAAACTAAAATTTTCATTCCCACACC 59.502 33.333 6.72 0.00 0.00 4.16
2027 2330 6.739331 ACTAAAATTTTCATTCCCACACCA 57.261 33.333 6.72 0.00 0.00 4.17
2028 2331 6.758254 ACTAAAATTTTCATTCCCACACCAG 58.242 36.000 6.72 0.00 0.00 4.00
2029 2332 5.628797 AAAATTTTCATTCCCACACCAGT 57.371 34.783 0.00 0.00 0.00 4.00
2030 2333 6.739331 AAAATTTTCATTCCCACACCAGTA 57.261 33.333 0.00 0.00 0.00 2.74
2031 2334 6.933514 AAATTTTCATTCCCACACCAGTAT 57.066 33.333 0.00 0.00 0.00 2.12
2032 2335 8.429237 AAAATTTTCATTCCCACACCAGTATA 57.571 30.769 0.00 0.00 0.00 1.47
2033 2336 8.429237 AAATTTTCATTCCCACACCAGTATAA 57.571 30.769 0.00 0.00 0.00 0.98
2034 2337 8.429237 AATTTTCATTCCCACACCAGTATAAA 57.571 30.769 0.00 0.00 0.00 1.40
2048 2351 8.192110 ACACCAGTATAAATGAAAAACGTTTGT 58.808 29.630 15.46 9.31 38.09 2.83
2100 2403 4.038080 TCTTCTCGCACGCGCTCA 62.038 61.111 5.73 0.00 39.59 4.26
2116 2419 4.314121 GCGCTCATATTCATCTCTTTCCT 58.686 43.478 0.00 0.00 0.00 3.36
2122 2426 7.530426 TCATATTCATCTCTTTCCTCGATCA 57.470 36.000 0.00 0.00 0.00 2.92
2134 2438 3.112075 CGATCACGCGCAGGTGTT 61.112 61.111 5.73 3.22 39.00 3.32
2159 2463 2.753029 GGCACAAGGTGGAGCTCT 59.247 61.111 14.64 0.00 33.64 4.09
2367 2672 2.068519 TGCTATGAGCGAGTGTTGTTG 58.931 47.619 0.00 0.00 46.26 3.33
2431 2737 1.198759 ACTGTTGGGGTGCCGTATCT 61.199 55.000 0.00 0.00 0.00 1.98
2434 2740 3.379865 TTGGGGTGCCGTATCTCGC 62.380 63.158 0.00 0.00 38.35 5.03
2539 2846 6.411630 TGAAAAGTTTCAACCGGATATACG 57.588 37.500 9.46 0.00 43.62 3.06
2574 2881 1.153568 CAGCGCCATCGAGGAAAGA 60.154 57.895 2.29 0.00 41.22 2.52
2595 2902 7.829378 AAGATACAACCGTCTACAGAAAATC 57.171 36.000 0.00 0.00 0.00 2.17
2598 2905 4.315803 ACAACCGTCTACAGAAAATCCTG 58.684 43.478 0.00 0.00 39.93 3.86
2615 2922 2.552315 TCCTGCAACCTTCGATGAAAAC 59.448 45.455 0.00 0.00 0.00 2.43
2616 2923 2.554032 CCTGCAACCTTCGATGAAAACT 59.446 45.455 0.00 0.00 0.00 2.66
2617 2924 3.558505 CTGCAACCTTCGATGAAAACTG 58.441 45.455 0.00 0.00 0.00 3.16
2618 2925 2.287547 TGCAACCTTCGATGAAAACTGC 60.288 45.455 0.00 2.37 0.00 4.40
2620 2927 3.550842 GCAACCTTCGATGAAAACTGCTT 60.551 43.478 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.506844 GGTGGTTTTACGGGCTAATTGAA 59.493 43.478 0.00 0.00 0.00 2.69
3 4 2.159490 CGGTGGTTTTACGGGCTAATTG 60.159 50.000 0.00 0.00 0.00 2.32
4 5 2.086094 CGGTGGTTTTACGGGCTAATT 58.914 47.619 0.00 0.00 0.00 1.40
6 7 0.396060 ACGGTGGTTTTACGGGCTAA 59.604 50.000 0.00 0.00 0.00 3.09
7 8 0.320596 CACGGTGGTTTTACGGGCTA 60.321 55.000 0.00 0.00 0.00 3.93
8 9 1.598685 CACGGTGGTTTTACGGGCT 60.599 57.895 0.00 0.00 0.00 5.19
9 10 1.165284 TTCACGGTGGTTTTACGGGC 61.165 55.000 8.50 0.00 0.00 6.13
10 11 0.869730 CTTCACGGTGGTTTTACGGG 59.130 55.000 8.50 0.00 0.00 5.28
11 12 1.528161 GACTTCACGGTGGTTTTACGG 59.472 52.381 8.50 0.00 0.00 4.02
12 13 2.473984 GAGACTTCACGGTGGTTTTACG 59.526 50.000 8.50 0.00 0.00 3.18
13 14 2.804527 GGAGACTTCACGGTGGTTTTAC 59.195 50.000 8.50 0.00 0.00 2.01
14 15 2.435069 TGGAGACTTCACGGTGGTTTTA 59.565 45.455 8.50 0.00 0.00 1.52
15 16 1.210967 TGGAGACTTCACGGTGGTTTT 59.789 47.619 8.50 0.00 0.00 2.43
16 17 0.834612 TGGAGACTTCACGGTGGTTT 59.165 50.000 8.50 0.00 0.00 3.27
17 18 1.056660 ATGGAGACTTCACGGTGGTT 58.943 50.000 8.50 0.00 0.00 3.67
18 19 0.321671 CATGGAGACTTCACGGTGGT 59.678 55.000 8.50 0.00 0.00 4.16
19 20 1.021390 GCATGGAGACTTCACGGTGG 61.021 60.000 8.50 0.00 0.00 4.61
20 21 1.354337 CGCATGGAGACTTCACGGTG 61.354 60.000 0.56 0.56 0.00 4.94
21 22 1.079819 CGCATGGAGACTTCACGGT 60.080 57.895 0.00 0.00 0.00 4.83
22 23 1.079819 ACGCATGGAGACTTCACGG 60.080 57.895 0.00 0.00 0.00 4.94
23 24 0.667487 ACACGCATGGAGACTTCACG 60.667 55.000 0.00 0.00 0.00 4.35
24 25 2.263077 CTACACGCATGGAGACTTCAC 58.737 52.381 0.00 0.00 39.47 3.18
25 26 1.404181 GCTACACGCATGGAGACTTCA 60.404 52.381 0.00 0.00 39.47 3.02
26 27 1.281899 GCTACACGCATGGAGACTTC 58.718 55.000 0.00 0.00 39.47 3.01
27 28 0.608130 TGCTACACGCATGGAGACTT 59.392 50.000 0.00 0.00 45.47 3.01
28 29 2.276869 TGCTACACGCATGGAGACT 58.723 52.632 0.00 0.00 45.47 3.24
29 30 4.910956 TGCTACACGCATGGAGAC 57.089 55.556 0.00 0.00 45.47 3.36
37 38 4.588278 GAAAATGGAGTAATGCTACACGC 58.412 43.478 0.00 0.00 41.66 5.34
38 39 4.260212 CCGAAAATGGAGTAATGCTACACG 60.260 45.833 0.00 0.00 41.66 4.49
39 40 4.495844 GCCGAAAATGGAGTAATGCTACAC 60.496 45.833 0.00 0.00 41.66 2.90
40 41 3.625764 GCCGAAAATGGAGTAATGCTACA 59.374 43.478 0.00 0.00 43.31 2.74
41 42 3.303132 CGCCGAAAATGGAGTAATGCTAC 60.303 47.826 0.00 0.00 0.00 3.58
42 43 2.869801 CGCCGAAAATGGAGTAATGCTA 59.130 45.455 0.00 0.00 0.00 3.49
43 44 1.670811 CGCCGAAAATGGAGTAATGCT 59.329 47.619 0.00 0.00 0.00 3.79
44 45 1.859998 GCGCCGAAAATGGAGTAATGC 60.860 52.381 0.00 0.00 0.00 3.56
45 46 1.268539 GGCGCCGAAAATGGAGTAATG 60.269 52.381 12.58 0.00 0.00 1.90
46 47 1.021968 GGCGCCGAAAATGGAGTAAT 58.978 50.000 12.58 0.00 0.00 1.89
47 48 1.363145 CGGCGCCGAAAATGGAGTAA 61.363 55.000 44.86 0.00 42.83 2.24
48 49 1.812093 CGGCGCCGAAAATGGAGTA 60.812 57.895 44.86 0.00 42.83 2.59
49 50 3.124921 CGGCGCCGAAAATGGAGT 61.125 61.111 44.86 0.00 42.83 3.85
64 65 3.551496 TTGCCCTTGAGCACTCCGG 62.551 63.158 0.00 0.00 43.97 5.14
65 66 2.032528 TTGCCCTTGAGCACTCCG 59.967 61.111 0.00 0.00 43.97 4.63
66 67 0.823356 TTGTTGCCCTTGAGCACTCC 60.823 55.000 0.00 0.00 43.97 3.85
67 68 1.068055 CATTGTTGCCCTTGAGCACTC 60.068 52.381 0.00 0.00 43.97 3.51
68 69 0.963962 CATTGTTGCCCTTGAGCACT 59.036 50.000 0.00 0.00 43.97 4.40
69 70 0.675633 ACATTGTTGCCCTTGAGCAC 59.324 50.000 0.00 0.00 43.97 4.40
70 71 1.412079 AACATTGTTGCCCTTGAGCA 58.588 45.000 0.15 0.00 42.17 4.26
71 72 2.137523 CAAACATTGTTGCCCTTGAGC 58.862 47.619 2.13 0.00 0.00 4.26
72 73 2.137523 GCAAACATTGTTGCCCTTGAG 58.862 47.619 2.13 0.00 46.69 3.02
73 74 2.237393 GCAAACATTGTTGCCCTTGA 57.763 45.000 2.13 0.00 46.69 3.02
80 81 2.318578 CACGCCTAGCAAACATTGTTG 58.681 47.619 2.13 0.00 0.00 3.33
81 82 1.269448 CCACGCCTAGCAAACATTGTT 59.731 47.619 0.00 0.00 0.00 2.83
82 83 0.881118 CCACGCCTAGCAAACATTGT 59.119 50.000 0.00 0.00 0.00 2.71
83 84 0.456653 GCCACGCCTAGCAAACATTG 60.457 55.000 0.00 0.00 0.00 2.82
84 85 0.893270 TGCCACGCCTAGCAAACATT 60.893 50.000 0.00 0.00 35.69 2.71
85 86 1.303236 TGCCACGCCTAGCAAACAT 60.303 52.632 0.00 0.00 35.69 2.71
86 87 1.965930 CTGCCACGCCTAGCAAACA 60.966 57.895 0.00 0.00 38.82 2.83
87 88 2.870372 CTGCCACGCCTAGCAAAC 59.130 61.111 0.00 0.00 38.82 2.93
88 89 3.055719 GCTGCCACGCCTAGCAAA 61.056 61.111 0.00 0.00 38.82 3.68
111 112 1.852067 ATAAATTCGGGCGCGATGGC 61.852 55.000 27.12 0.00 43.88 4.40
112 113 1.434555 TATAAATTCGGGCGCGATGG 58.565 50.000 27.12 0.00 0.00 3.51
113 114 3.416277 CAATATAAATTCGGGCGCGATG 58.584 45.455 27.12 15.07 0.00 3.84
114 115 2.159572 GCAATATAAATTCGGGCGCGAT 60.160 45.455 27.12 14.66 0.00 4.58
115 116 1.195900 GCAATATAAATTCGGGCGCGA 59.804 47.619 23.01 23.01 0.00 5.87
116 117 1.602191 GCAATATAAATTCGGGCGCG 58.398 50.000 18.21 18.21 0.00 6.86
117 118 1.268352 TGGCAATATAAATTCGGGCGC 59.732 47.619 0.00 0.00 0.00 6.53
118 119 3.634568 TTGGCAATATAAATTCGGGCG 57.365 42.857 0.00 0.00 0.00 6.13
119 120 6.859420 AAATTTGGCAATATAAATTCGGGC 57.141 33.333 0.00 0.00 35.94 6.13
120 121 7.602265 CCCTAAATTTGGCAATATAAATTCGGG 59.398 37.037 0.00 7.48 38.75 5.14
121 122 7.602265 CCCCTAAATTTGGCAATATAAATTCGG 59.398 37.037 0.00 2.43 35.94 4.30
122 123 7.117667 GCCCCTAAATTTGGCAATATAAATTCG 59.882 37.037 12.00 0.00 44.70 3.34
123 124 8.322906 GCCCCTAAATTTGGCAATATAAATTC 57.677 34.615 12.00 0.00 44.70 2.17
134 135 1.134431 CACCATGCCCCTAAATTTGGC 60.134 52.381 10.36 10.36 45.56 4.52
135 136 1.485895 CCACCATGCCCCTAAATTTGG 59.514 52.381 0.00 0.00 0.00 3.28
136 137 1.485895 CCCACCATGCCCCTAAATTTG 59.514 52.381 0.00 0.00 0.00 2.32
137 138 1.624949 CCCCACCATGCCCCTAAATTT 60.625 52.381 0.00 0.00 0.00 1.82
138 139 0.031212 CCCCACCATGCCCCTAAATT 60.031 55.000 0.00 0.00 0.00 1.82
139 140 1.625884 CCCCACCATGCCCCTAAAT 59.374 57.895 0.00 0.00 0.00 1.40
140 141 3.104836 CCCCACCATGCCCCTAAA 58.895 61.111 0.00 0.00 0.00 1.85
141 142 3.749870 GCCCCACCATGCCCCTAA 61.750 66.667 0.00 0.00 0.00 2.69
142 143 4.777546 AGCCCCACCATGCCCCTA 62.778 66.667 0.00 0.00 0.00 3.53
145 146 4.147587 ATGAGCCCCACCATGCCC 62.148 66.667 0.00 0.00 0.00 5.36
146 147 2.836360 CATGAGCCCCACCATGCC 60.836 66.667 0.00 0.00 34.52 4.40
147 148 2.836360 CCATGAGCCCCACCATGC 60.836 66.667 0.00 0.00 38.95 4.06
148 149 1.454479 GACCATGAGCCCCACCATG 60.454 63.158 0.00 0.00 39.72 3.66
149 150 1.930133 TGACCATGAGCCCCACCAT 60.930 57.895 0.00 0.00 0.00 3.55
150 151 2.531428 TGACCATGAGCCCCACCA 60.531 61.111 0.00 0.00 0.00 4.17
151 152 2.044946 GTGACCATGAGCCCCACC 60.045 66.667 0.00 0.00 0.00 4.61
152 153 2.044946 GGTGACCATGAGCCCCAC 60.045 66.667 0.00 0.00 0.00 4.61
153 154 2.531428 TGGTGACCATGAGCCCCA 60.531 61.111 0.00 0.00 0.00 4.96
154 155 2.044946 GTGGTGACCATGAGCCCC 60.045 66.667 7.94 0.00 35.28 5.80
155 156 2.436646 CGTGGTGACCATGAGCCC 60.437 66.667 18.90 0.00 42.73 5.19
156 157 2.436646 CCGTGGTGACCATGAGCC 60.437 66.667 24.81 1.99 42.73 4.70
157 158 3.127533 GCCGTGGTGACCATGAGC 61.128 66.667 24.81 20.54 42.73 4.26
158 159 2.779951 TTCGCCGTGGTGACCATGAG 62.780 60.000 24.81 17.22 42.73 2.90
159 160 2.873525 TTCGCCGTGGTGACCATGA 61.874 57.895 24.81 9.78 42.73 3.07
160 161 2.358125 TTCGCCGTGGTGACCATG 60.358 61.111 16.86 16.86 40.02 3.66
161 162 2.358247 GTTCGCCGTGGTGACCAT 60.358 61.111 7.94 0.00 35.28 3.55
162 163 4.612412 GGTTCGCCGTGGTGACCA 62.612 66.667 0.00 0.00 34.07 4.02
194 195 4.176752 CACCTAAGGCGGCCTCCC 62.177 72.222 24.08 4.44 30.89 4.30
195 196 4.176752 CCACCTAAGGCGGCCTCC 62.177 72.222 24.08 2.56 30.89 4.30
196 197 2.444256 ATCCACCTAAGGCGGCCTC 61.444 63.158 24.08 0.00 30.89 4.70
197 198 2.366972 ATCCACCTAAGGCGGCCT 60.367 61.111 17.69 17.69 33.87 5.19
198 199 1.692173 TACATCCACCTAAGGCGGCC 61.692 60.000 12.11 12.11 0.00 6.13
199 200 0.396811 ATACATCCACCTAAGGCGGC 59.603 55.000 0.00 0.00 0.00 6.53
200 201 3.162666 TCTATACATCCACCTAAGGCGG 58.837 50.000 0.00 0.00 0.00 6.13
201 202 4.748892 CATCTATACATCCACCTAAGGCG 58.251 47.826 0.00 0.00 0.00 5.52
202 203 4.223923 AGCATCTATACATCCACCTAAGGC 59.776 45.833 0.00 0.00 0.00 4.35
203 204 5.481824 TCAGCATCTATACATCCACCTAAGG 59.518 44.000 0.00 0.00 0.00 2.69
204 205 6.015095 TGTCAGCATCTATACATCCACCTAAG 60.015 42.308 0.00 0.00 0.00 2.18
205 206 5.838521 TGTCAGCATCTATACATCCACCTAA 59.161 40.000 0.00 0.00 0.00 2.69
206 207 5.393866 TGTCAGCATCTATACATCCACCTA 58.606 41.667 0.00 0.00 0.00 3.08
207 208 4.226384 TGTCAGCATCTATACATCCACCT 58.774 43.478 0.00 0.00 0.00 4.00
208 209 4.607293 TGTCAGCATCTATACATCCACC 57.393 45.455 0.00 0.00 0.00 4.61
212 213 6.700960 GCTATGGATGTCAGCATCTATACATC 59.299 42.308 8.80 0.00 46.83 3.06
213 214 6.383436 AGCTATGGATGTCAGCATCTATACAT 59.617 38.462 8.80 6.14 46.83 2.29
214 215 5.718607 AGCTATGGATGTCAGCATCTATACA 59.281 40.000 8.80 0.08 46.83 2.29
215 216 6.219417 AGCTATGGATGTCAGCATCTATAC 57.781 41.667 8.80 7.17 46.83 1.47
216 217 6.666980 AGAAGCTATGGATGTCAGCATCTATA 59.333 38.462 11.33 11.33 46.83 1.31
221 222 4.102838 AGAAGAAGCTATGGATGTCAGCAT 59.897 41.667 0.00 0.00 37.78 3.79
222 223 3.453717 AGAAGAAGCTATGGATGTCAGCA 59.546 43.478 0.00 0.00 37.78 4.41
223 224 4.070630 AGAAGAAGCTATGGATGTCAGC 57.929 45.455 0.00 0.00 35.49 4.26
224 225 6.036953 GTCAAAGAAGAAGCTATGGATGTCAG 59.963 42.308 0.00 0.00 0.00 3.51
225 226 5.877012 GTCAAAGAAGAAGCTATGGATGTCA 59.123 40.000 0.00 0.00 0.00 3.58
226 227 5.006165 CGTCAAAGAAGAAGCTATGGATGTC 59.994 44.000 0.00 0.00 0.00 3.06
227 228 4.872691 CGTCAAAGAAGAAGCTATGGATGT 59.127 41.667 0.00 0.00 0.00 3.06
228 229 4.872691 ACGTCAAAGAAGAAGCTATGGATG 59.127 41.667 0.00 0.00 0.00 3.51
229 230 5.091261 ACGTCAAAGAAGAAGCTATGGAT 57.909 39.130 0.00 0.00 0.00 3.41
230 231 4.021456 TGACGTCAAAGAAGAAGCTATGGA 60.021 41.667 17.62 0.00 0.00 3.41
231 232 4.245660 TGACGTCAAAGAAGAAGCTATGG 58.754 43.478 17.62 0.00 0.00 2.74
232 233 5.578336 TGATGACGTCAAAGAAGAAGCTATG 59.422 40.000 24.13 0.00 32.78 2.23
233 234 5.578727 GTGATGACGTCAAAGAAGAAGCTAT 59.421 40.000 24.13 0.00 38.90 2.97
234 235 4.923871 GTGATGACGTCAAAGAAGAAGCTA 59.076 41.667 24.13 0.00 38.90 3.32
235 236 3.743396 GTGATGACGTCAAAGAAGAAGCT 59.257 43.478 24.13 0.75 38.90 3.74
236 237 3.120511 GGTGATGACGTCAAAGAAGAAGC 60.121 47.826 24.13 8.79 38.90 3.86
237 238 3.433615 GGGTGATGACGTCAAAGAAGAAG 59.566 47.826 24.13 0.00 38.90 2.85
238 239 3.399330 GGGTGATGACGTCAAAGAAGAA 58.601 45.455 24.13 0.00 38.90 2.52
239 240 2.609491 CGGGTGATGACGTCAAAGAAGA 60.609 50.000 24.13 0.00 38.90 2.87
240 241 1.726791 CGGGTGATGACGTCAAAGAAG 59.273 52.381 24.13 8.97 38.90 2.85
241 242 1.606994 CCGGGTGATGACGTCAAAGAA 60.607 52.381 24.13 5.53 38.90 2.52
242 243 0.037697 CCGGGTGATGACGTCAAAGA 60.038 55.000 24.13 6.37 38.90 2.52
243 244 1.019278 CCCGGGTGATGACGTCAAAG 61.019 60.000 24.13 9.90 38.90 2.77
244 245 1.004320 CCCGGGTGATGACGTCAAA 60.004 57.895 24.13 11.42 38.90 2.69
245 246 2.660206 CCCGGGTGATGACGTCAA 59.340 61.111 24.13 3.63 38.90 3.18
246 247 4.077184 GCCCGGGTGATGACGTCA 62.077 66.667 24.63 22.48 0.00 4.35
247 248 4.832608 GGCCCGGGTGATGACGTC 62.833 72.222 24.63 9.11 0.00 4.34
249 250 4.838152 CAGGCCCGGGTGATGACG 62.838 72.222 24.63 0.00 0.00 4.35
250 251 2.764637 AAACAGGCCCGGGTGATGAC 62.765 60.000 24.63 3.18 0.00 3.06
251 252 2.478335 GAAACAGGCCCGGGTGATGA 62.478 60.000 24.63 0.00 0.00 2.92
252 253 2.035626 AAACAGGCCCGGGTGATG 59.964 61.111 24.63 20.12 0.00 3.07
253 254 2.355115 GAAACAGGCCCGGGTGAT 59.645 61.111 24.63 5.01 0.00 3.06
254 255 4.323477 CGAAACAGGCCCGGGTGA 62.323 66.667 24.63 0.00 0.00 4.02
257 258 4.778143 CTCCGAAACAGGCCCGGG 62.778 72.222 19.09 19.09 43.16 5.73
258 259 4.778143 CCTCCGAAACAGGCCCGG 62.778 72.222 10.81 10.81 44.22 5.73
259 260 2.741486 TTTCCTCCGAAACAGGCCCG 62.741 60.000 0.00 0.00 32.96 6.13
260 261 1.074248 TTTCCTCCGAAACAGGCCC 59.926 57.895 0.00 0.00 32.96 5.80
261 262 4.813346 TTTCCTCCGAAACAGGCC 57.187 55.556 0.00 0.00 32.96 5.19
271 272 2.669240 CCCGGAGTGGTTTCCTCC 59.331 66.667 0.73 0.00 44.24 4.30
272 273 2.046217 GCCCGGAGTGGTTTCCTC 60.046 66.667 0.73 0.00 34.96 3.71
273 274 3.647771 GGCCCGGAGTGGTTTCCT 61.648 66.667 0.73 0.00 34.96 3.36
274 275 4.735358 GGGCCCGGAGTGGTTTCC 62.735 72.222 5.69 0.00 35.15 3.13
275 276 2.987355 TTTGGGCCCGGAGTGGTTTC 62.987 60.000 19.37 0.00 35.15 2.78
276 277 2.380571 ATTTGGGCCCGGAGTGGTTT 62.381 55.000 19.37 0.00 35.15 3.27
277 278 2.781431 GATTTGGGCCCGGAGTGGTT 62.781 60.000 19.37 0.00 35.15 3.67
278 279 3.264845 ATTTGGGCCCGGAGTGGT 61.265 61.111 19.37 0.00 35.15 4.16
279 280 2.440247 GATTTGGGCCCGGAGTGG 60.440 66.667 19.37 0.00 37.55 4.00
280 281 2.824041 CGATTTGGGCCCGGAGTG 60.824 66.667 19.37 2.53 0.00 3.51
281 282 4.109675 CCGATTTGGGCCCGGAGT 62.110 66.667 19.37 4.76 45.58 3.85
282 283 3.792736 TCCGATTTGGGCCCGGAG 61.793 66.667 19.37 6.43 46.17 4.63
288 289 2.830370 CTGGGCTCCGATTTGGGC 60.830 66.667 0.00 0.00 38.76 5.36
289 290 2.830370 GCTGGGCTCCGATTTGGG 60.830 66.667 0.00 0.00 38.76 4.12
290 291 1.250154 TTTGCTGGGCTCCGATTTGG 61.250 55.000 0.00 0.00 40.09 3.28
291 292 0.109132 GTTTGCTGGGCTCCGATTTG 60.109 55.000 0.00 0.00 0.00 2.32
292 293 0.251341 AGTTTGCTGGGCTCCGATTT 60.251 50.000 0.00 0.00 0.00 2.17
293 294 0.618458 TAGTTTGCTGGGCTCCGATT 59.382 50.000 0.00 0.00 0.00 3.34
294 295 0.618458 TTAGTTTGCTGGGCTCCGAT 59.382 50.000 0.00 0.00 0.00 4.18
295 296 0.321298 GTTAGTTTGCTGGGCTCCGA 60.321 55.000 0.00 0.00 0.00 4.55
296 297 0.321653 AGTTAGTTTGCTGGGCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
297 298 1.813178 GAAGTTAGTTTGCTGGGCTCC 59.187 52.381 0.00 0.00 0.00 4.70
298 299 2.485814 CTGAAGTTAGTTTGCTGGGCTC 59.514 50.000 0.00 0.00 0.00 4.70
299 300 2.158608 ACTGAAGTTAGTTTGCTGGGCT 60.159 45.455 0.00 0.00 0.00 5.19
300 301 2.230660 ACTGAAGTTAGTTTGCTGGGC 58.769 47.619 0.00 0.00 0.00 5.36
301 302 4.918810 AAACTGAAGTTAGTTTGCTGGG 57.081 40.909 3.35 0.00 46.15 4.45
457 469 9.158233 CAAATCTAGGAAACATGCAAATGAAAT 57.842 29.630 0.00 0.00 0.00 2.17
513 710 5.589452 ACACGGTGTAAACTTGACCATTAAA 59.411 36.000 12.96 0.00 0.00 1.52
593 793 7.336931 GGTCATGCTCTAATTGAAAAGGTTCTA 59.663 37.037 0.00 0.00 34.60 2.10
597 797 5.324409 TGGTCATGCTCTAATTGAAAAGGT 58.676 37.500 0.00 0.00 0.00 3.50
599 799 6.748333 TCTGGTCATGCTCTAATTGAAAAG 57.252 37.500 0.00 0.00 0.00 2.27
724 927 2.422597 TCACTCAACCAAAGGCGTATG 58.577 47.619 0.00 0.00 0.00 2.39
728 931 1.879380 TCATTCACTCAACCAAAGGCG 59.121 47.619 0.00 0.00 0.00 5.52
784 997 2.079925 GTGCCAGAAAGTAGGAAGCAG 58.920 52.381 0.00 0.00 0.00 4.24
787 1000 8.451748 GTTTTATTAGTGCCAGAAAGTAGGAAG 58.548 37.037 0.00 0.00 0.00 3.46
792 1005 7.228590 AGGTGTTTTATTAGTGCCAGAAAGTA 58.771 34.615 0.00 0.00 0.00 2.24
793 1006 6.068670 AGGTGTTTTATTAGTGCCAGAAAGT 58.931 36.000 0.00 0.00 0.00 2.66
891 1107 2.100631 GTAGACGCGGCAATGTGCT 61.101 57.895 17.71 0.00 44.28 4.40
892 1108 1.705337 ATGTAGACGCGGCAATGTGC 61.705 55.000 17.71 0.00 44.08 4.57
950 1203 0.324943 GTGAGTGTGGTATGGGCAGT 59.675 55.000 0.00 0.00 0.00 4.40
951 1204 0.740868 CGTGAGTGTGGTATGGGCAG 60.741 60.000 0.00 0.00 0.00 4.85
1590 1857 1.669115 CTCGTTGTGGCACTCCTGG 60.669 63.158 19.83 3.96 0.00 4.45
1624 1891 3.238241 CTCGTACGAACCGCGCTG 61.238 66.667 20.00 0.00 46.04 5.18
1665 1935 1.000607 ACGAGCACAACTACATGACGT 60.001 47.619 0.00 0.00 0.00 4.34
1680 1981 4.803426 CCTCCACTCCGCACGAGC 62.803 72.222 0.00 0.00 43.01 5.03
1687 1988 4.742201 CCACACGCCTCCACTCCG 62.742 72.222 0.00 0.00 0.00 4.63
1752 2053 0.599060 TACAGACCACGCGAATGTCA 59.401 50.000 15.93 0.00 0.00 3.58
1793 2094 3.629058 CAGAATCGTATGGTGGAGTACG 58.371 50.000 0.00 0.00 43.61 3.67
1794 2095 3.181479 TGCAGAATCGTATGGTGGAGTAC 60.181 47.826 0.00 0.00 0.00 2.73
1795 2096 3.028130 TGCAGAATCGTATGGTGGAGTA 58.972 45.455 0.00 0.00 0.00 2.59
1796 2097 1.831106 TGCAGAATCGTATGGTGGAGT 59.169 47.619 0.00 0.00 0.00 3.85
1937 2240 3.641437 TGTCATGCTTGCCAACTAAAC 57.359 42.857 0.00 0.00 0.00 2.01
1938 2241 4.662468 TTTGTCATGCTTGCCAACTAAA 57.338 36.364 0.00 0.00 0.00 1.85
1941 2244 2.895404 AGATTTGTCATGCTTGCCAACT 59.105 40.909 0.00 0.00 0.00 3.16
1942 2245 3.308438 AGATTTGTCATGCTTGCCAAC 57.692 42.857 0.00 0.00 0.00 3.77
1943 2246 5.664294 AATAGATTTGTCATGCTTGCCAA 57.336 34.783 0.00 0.00 0.00 4.52
1944 2247 5.185442 TGAAATAGATTTGTCATGCTTGCCA 59.815 36.000 0.00 0.00 0.00 4.92
1945 2248 5.653507 TGAAATAGATTTGTCATGCTTGCC 58.346 37.500 0.00 0.00 0.00 4.52
1946 2249 7.766219 ATTGAAATAGATTTGTCATGCTTGC 57.234 32.000 0.00 0.00 0.00 4.01
1968 2271 9.912634 CGGCAATATCCTGACATAAAATAAATT 57.087 29.630 0.00 0.00 0.00 1.82
1969 2272 8.028938 GCGGCAATATCCTGACATAAAATAAAT 58.971 33.333 0.00 0.00 0.00 1.40
1970 2273 7.367285 GCGGCAATATCCTGACATAAAATAAA 58.633 34.615 0.00 0.00 0.00 1.40
1971 2274 6.348132 CGCGGCAATATCCTGACATAAAATAA 60.348 38.462 0.00 0.00 0.00 1.40
1972 2275 5.121611 CGCGGCAATATCCTGACATAAAATA 59.878 40.000 0.00 0.00 0.00 1.40
1973 2276 4.083324 CGCGGCAATATCCTGACATAAAAT 60.083 41.667 0.00 0.00 0.00 1.82
1974 2277 3.249799 CGCGGCAATATCCTGACATAAAA 59.750 43.478 0.00 0.00 0.00 1.52
1975 2278 2.805671 CGCGGCAATATCCTGACATAAA 59.194 45.455 0.00 0.00 0.00 1.40
1976 2279 2.224185 ACGCGGCAATATCCTGACATAA 60.224 45.455 12.47 0.00 0.00 1.90
1977 2280 1.343142 ACGCGGCAATATCCTGACATA 59.657 47.619 12.47 0.00 0.00 2.29
1978 2281 0.106708 ACGCGGCAATATCCTGACAT 59.893 50.000 12.47 0.00 0.00 3.06
1979 2282 0.107897 AACGCGGCAATATCCTGACA 60.108 50.000 12.47 0.00 0.00 3.58
1980 2283 1.014352 AAACGCGGCAATATCCTGAC 58.986 50.000 12.47 0.00 0.00 3.51
1981 2284 2.206750 GTAAACGCGGCAATATCCTGA 58.793 47.619 12.47 0.00 0.00 3.86
1982 2285 1.937223 TGTAAACGCGGCAATATCCTG 59.063 47.619 12.47 0.00 0.00 3.86
1983 2286 2.319136 TGTAAACGCGGCAATATCCT 57.681 45.000 12.47 0.00 0.00 3.24
1984 2287 3.103007 GTTTGTAAACGCGGCAATATCC 58.897 45.455 12.47 0.00 0.00 2.59
1985 2288 4.011058 AGTTTGTAAACGCGGCAATATC 57.989 40.909 12.47 4.62 43.51 1.63
1986 2289 5.548706 TTAGTTTGTAAACGCGGCAATAT 57.451 34.783 12.47 4.71 43.51 1.28
1987 2290 5.354054 TTTAGTTTGTAAACGCGGCAATA 57.646 34.783 12.47 0.00 43.51 1.90
1988 2291 3.900388 TTAGTTTGTAAACGCGGCAAT 57.100 38.095 12.47 0.00 43.51 3.56
1989 2292 3.687572 TTTAGTTTGTAAACGCGGCAA 57.312 38.095 12.47 7.32 43.51 4.52
1990 2293 3.687572 TTTTAGTTTGTAAACGCGGCA 57.312 38.095 12.47 0.29 43.51 5.69
1991 2294 5.564213 AAATTTTAGTTTGTAAACGCGGC 57.436 34.783 12.47 0.00 43.51 6.53
1992 2295 7.151103 TGAAAATTTTAGTTTGTAAACGCGG 57.849 32.000 12.47 0.00 43.51 6.46
1993 2296 9.285387 GAATGAAAATTTTAGTTTGTAAACGCG 57.715 29.630 3.53 3.53 43.51 6.01
1994 2297 9.575702 GGAATGAAAATTTTAGTTTGTAAACGC 57.424 29.630 2.75 0.00 43.51 4.84
1999 2302 9.535878 GTGTGGGAATGAAAATTTTAGTTTGTA 57.464 29.630 2.75 0.00 0.00 2.41
2000 2303 7.497579 GGTGTGGGAATGAAAATTTTAGTTTGT 59.502 33.333 2.75 0.00 0.00 2.83
2001 2304 7.497249 TGGTGTGGGAATGAAAATTTTAGTTTG 59.503 33.333 2.75 0.00 0.00 2.93
2002 2305 7.569240 TGGTGTGGGAATGAAAATTTTAGTTT 58.431 30.769 2.75 0.00 0.00 2.66
2003 2306 7.130681 TGGTGTGGGAATGAAAATTTTAGTT 57.869 32.000 2.75 1.81 0.00 2.24
2004 2307 6.326323 ACTGGTGTGGGAATGAAAATTTTAGT 59.674 34.615 2.75 0.00 0.00 2.24
2005 2308 6.758254 ACTGGTGTGGGAATGAAAATTTTAG 58.242 36.000 2.75 0.00 0.00 1.85
2006 2309 6.739331 ACTGGTGTGGGAATGAAAATTTTA 57.261 33.333 2.75 0.00 0.00 1.52
2007 2310 5.628797 ACTGGTGTGGGAATGAAAATTTT 57.371 34.783 2.28 2.28 0.00 1.82
2008 2311 6.933514 ATACTGGTGTGGGAATGAAAATTT 57.066 33.333 0.00 0.00 0.00 1.82
2009 2312 8.429237 TTTATACTGGTGTGGGAATGAAAATT 57.571 30.769 0.00 0.00 0.00 1.82
2010 2313 8.477256 CATTTATACTGGTGTGGGAATGAAAAT 58.523 33.333 0.00 0.00 0.00 1.82
2011 2314 7.671819 TCATTTATACTGGTGTGGGAATGAAAA 59.328 33.333 0.00 0.00 31.97 2.29
2012 2315 7.178573 TCATTTATACTGGTGTGGGAATGAAA 58.821 34.615 0.00 0.00 31.97 2.69
2013 2316 6.726379 TCATTTATACTGGTGTGGGAATGAA 58.274 36.000 0.00 0.00 31.97 2.57
2014 2317 6.320434 TCATTTATACTGGTGTGGGAATGA 57.680 37.500 0.00 0.00 32.20 2.57
2015 2318 7.403312 TTTCATTTATACTGGTGTGGGAATG 57.597 36.000 0.00 0.00 0.00 2.67
2016 2319 8.311109 GTTTTTCATTTATACTGGTGTGGGAAT 58.689 33.333 0.00 0.00 0.00 3.01
2017 2320 7.522399 CGTTTTTCATTTATACTGGTGTGGGAA 60.522 37.037 0.00 0.00 0.00 3.97
2018 2321 6.072397 CGTTTTTCATTTATACTGGTGTGGGA 60.072 38.462 0.00 0.00 0.00 4.37
2019 2322 6.090129 CGTTTTTCATTTATACTGGTGTGGG 58.910 40.000 0.00 0.00 0.00 4.61
2020 2323 6.674066 ACGTTTTTCATTTATACTGGTGTGG 58.326 36.000 0.00 0.00 0.00 4.17
2021 2324 8.476142 CAAACGTTTTTCATTTATACTGGTGTG 58.524 33.333 11.66 0.00 0.00 3.82
2022 2325 8.192110 ACAAACGTTTTTCATTTATACTGGTGT 58.808 29.630 11.66 0.00 0.00 4.16
2023 2326 8.568732 ACAAACGTTTTTCATTTATACTGGTG 57.431 30.769 11.66 0.00 0.00 4.17
2024 2327 8.407064 TGACAAACGTTTTTCATTTATACTGGT 58.593 29.630 22.46 7.97 0.00 4.00
2025 2328 8.789881 TGACAAACGTTTTTCATTTATACTGG 57.210 30.769 22.46 4.98 0.00 4.00
2031 2334 9.440784 GTGTAGATGACAAACGTTTTTCATTTA 57.559 29.630 32.11 28.38 40.66 1.40
2032 2335 7.165154 CGTGTAGATGACAAACGTTTTTCATTT 59.835 33.333 32.11 29.18 40.66 2.32
2033 2336 6.631238 CGTGTAGATGACAAACGTTTTTCATT 59.369 34.615 32.11 24.92 40.66 2.57
2034 2337 6.133392 CGTGTAGATGACAAACGTTTTTCAT 58.867 36.000 32.13 32.13 40.66 2.57
2048 2351 4.201679 CGGCCGGCGTGTAGATGA 62.202 66.667 22.54 0.00 0.00 2.92
2073 2376 1.303091 TGCGAGAAGACGACCGATCA 61.303 55.000 0.00 0.00 35.09 2.92
2100 2403 6.385843 CGTGATCGAGGAAAGAGATGAATAT 58.614 40.000 0.00 0.00 39.71 1.28
2116 2419 3.567478 AACACCTGCGCGTGATCGA 62.567 57.895 20.20 0.00 39.71 3.59
2292 2596 1.689273 CCACAGCTACTAGGATCACCC 59.311 57.143 0.00 0.00 36.73 4.61
2352 2657 1.227823 CCCCAACAACACTCGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
2367 2672 3.771160 ATCGTCGTGCACTCCCCC 61.771 66.667 16.19 0.00 0.00 5.40
2389 2694 2.440147 CCATGGGTGCCAGGTTCA 59.560 61.111 2.85 0.00 36.75 3.18
2447 2753 1.675310 CGGGTTCTGCAATGCCTCA 60.675 57.895 1.53 0.00 0.00 3.86
2475 2781 2.462125 TAGCGGTTGCAGCACATGGA 62.462 55.000 2.05 0.00 46.23 3.41
2539 2846 0.386478 CTGAACGCTTGCAGCTTTCC 60.386 55.000 17.98 7.09 45.50 3.13
2574 2881 6.106673 CAGGATTTTCTGTAGACGGTTGTAT 58.893 40.000 0.00 0.00 0.00 2.29
2595 2902 2.554032 AGTTTTCATCGAAGGTTGCAGG 59.446 45.455 0.00 0.00 0.00 4.85
2598 2905 2.030805 AGCAGTTTTCATCGAAGGTTGC 60.031 45.455 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.