Multiple sequence alignment - TraesCS1A01G302500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G302500 chr1A 100.000 4959 0 0 1 4959 496292626 496297584 0.000000e+00 9158.0
1 TraesCS1A01G302500 chr1B 90.771 2167 141 31 1486 3637 536602456 536604578 0.000000e+00 2839.0
2 TraesCS1A01G302500 chr1B 85.644 1226 87 40 3751 4944 536604742 536605910 0.000000e+00 1206.0
3 TraesCS1A01G302500 chr1B 90.166 661 36 13 781 1428 536601700 536602344 0.000000e+00 833.0
4 TraesCS1A01G302500 chr1D 95.918 980 37 3 2660 3637 399822454 399823432 0.000000e+00 1585.0
5 TraesCS1A01G302500 chr1D 89.007 1128 71 15 1482 2606 399821246 399822323 0.000000e+00 1347.0
6 TraesCS1A01G302500 chr1D 87.670 884 60 20 3751 4599 399823589 399824458 0.000000e+00 983.0
7 TraesCS1A01G302500 chr1D 88.859 736 52 17 733 1466 399820488 399821195 0.000000e+00 878.0
8 TraesCS1A01G302500 chr1D 93.103 203 3 3 4746 4944 399824555 399824750 2.260000e-73 287.0
9 TraesCS1A01G302500 chr3A 95.380 606 25 2 1 603 743942712 743943317 0.000000e+00 961.0
10 TraesCS1A01G302500 chr2A 94.551 624 23 4 1 616 631656465 631655845 0.000000e+00 953.0
11 TraesCS1A01G302500 chr2A 94.850 602 24 5 1 599 778820551 778819954 0.000000e+00 933.0
12 TraesCS1A01G302500 chr2A 77.711 166 24 9 369 532 631656188 631656034 6.840000e-14 89.8
13 TraesCS1A01G302500 chr7A 94.702 604 24 2 1 603 144606084 144605488 0.000000e+00 931.0
14 TraesCS1A01G302500 chr7A 76.087 368 51 19 262 595 510729198 510728834 1.850000e-34 158.0
15 TraesCS1A01G302500 chr7A 83.333 180 18 6 360 528 510729187 510729009 6.650000e-34 156.0
16 TraesCS1A01G302500 chr7A 84.000 150 14 6 194 334 538297549 538297697 8.660000e-28 135.0
17 TraesCS1A01G302500 chr7A 84.946 93 12 1 436 528 510729154 510729064 5.290000e-15 93.5
18 TraesCS1A01G302500 chr7A 78.873 142 17 9 393 532 144605788 144605658 3.180000e-12 84.2
19 TraesCS1A01G302500 chr2D 79.377 514 73 18 87 598 153358168 153357686 1.030000e-86 331.0
20 TraesCS1A01G302500 chr2D 79.429 175 21 8 361 523 153357984 153357813 5.250000e-20 110.0
21 TraesCS1A01G302500 chr6B 87.546 273 32 2 92 363 8818448 8818719 1.040000e-81 315.0
22 TraesCS1A01G302500 chr6B 86.496 274 34 3 92 363 8858982 8859254 1.040000e-76 298.0
23 TraesCS1A01G302500 chr6B 92.308 65 3 2 369 432 8818637 8818700 1.900000e-14 91.6
24 TraesCS1A01G302500 chr6B 93.220 59 3 1 374 431 8859176 8859234 8.840000e-13 86.1
25 TraesCS1A01G302500 chr4D 87.160 257 31 2 87 343 445741807 445741553 1.750000e-74 291.0
26 TraesCS1A01G302500 chr4D 81.461 178 22 3 361 528 445741622 445741446 8.660000e-28 135.0
27 TraesCS1A01G302500 chr4D 92.308 52 4 0 485 536 445741597 445741546 1.910000e-09 75.0
28 TraesCS1A01G302500 chr7B 87.500 80 5 4 1 79 11683708 11683633 2.460000e-13 87.9
29 TraesCS1A01G302500 chr7B 85.484 62 8 1 539 599 128760044 128760105 4.140000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G302500 chr1A 496292626 496297584 4958 False 9158.0 9158 100.000000 1 4959 1 chr1A.!!$F1 4958
1 TraesCS1A01G302500 chr1B 536601700 536605910 4210 False 1626.0 2839 88.860333 781 4944 3 chr1B.!!$F1 4163
2 TraesCS1A01G302500 chr1D 399820488 399824750 4262 False 1016.0 1585 90.911400 733 4944 5 chr1D.!!$F1 4211
3 TraesCS1A01G302500 chr3A 743942712 743943317 605 False 961.0 961 95.380000 1 603 1 chr3A.!!$F1 602
4 TraesCS1A01G302500 chr2A 778819954 778820551 597 True 933.0 933 94.850000 1 599 1 chr2A.!!$R1 598
5 TraesCS1A01G302500 chr2A 631655845 631656465 620 True 521.4 953 86.131000 1 616 2 chr2A.!!$R2 615
6 TraesCS1A01G302500 chr7A 144605488 144606084 596 True 507.6 931 86.787500 1 603 2 chr7A.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 677 0.035439 ATCCAAATGCCGAACCGTCT 60.035 50.0 0.00 0.0 0.00 4.18 F
1087 1102 0.032017 TCAAGCTCCCCTCTCTACCC 60.032 60.0 0.00 0.0 0.00 3.69 F
2057 2150 0.034670 AGAGCTTCCCACCTTGATGC 60.035 55.0 0.00 0.0 34.19 3.91 F
3245 3418 0.179137 GATCTCGTGTGATCCGTGCA 60.179 55.0 1.41 0.0 37.47 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2208 0.036306 TCCTCGCCTTCTTTTGTCCC 59.964 55.0 0.00 0.0 0.0 4.46 R
2416 2509 0.533755 AGTGTGGTGTGCTCTTCTGC 60.534 55.0 0.00 0.0 0.0 4.26 R
3641 3815 0.036306 AACAAGTTGGGGTCCGCTAG 59.964 55.0 7.96 0.0 0.0 3.42 R
4627 4899 0.320073 TTCGCGTTCTGGAATCGGTT 60.320 50.0 5.77 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.352009 TCTCAAGCCTTCTCTCAATCTCT 58.648 43.478 0.00 0.00 0.00 3.10
251 252 5.531634 CAATATCCTGTGTGTTGCAAAAGT 58.468 37.500 0.00 0.00 0.00 2.66
345 347 3.760738 TGTGTTGCAATAATGGAGGACA 58.239 40.909 0.59 0.00 0.00 4.02
476 482 1.102154 CGTTGCAATAATGGAGGGCA 58.898 50.000 0.59 0.00 0.00 5.36
477 483 1.682854 CGTTGCAATAATGGAGGGCAT 59.317 47.619 0.59 0.00 34.03 4.40
595 601 4.565564 CCGACCGATCTTTTAAAACGATCT 59.434 41.667 23.23 14.17 33.20 2.75
618 630 2.351276 CGTAGCTGCCCCCTTGTT 59.649 61.111 0.00 0.00 0.00 2.83
619 631 2.040544 CGTAGCTGCCCCCTTGTTG 61.041 63.158 0.00 0.00 0.00 3.33
620 632 1.378762 GTAGCTGCCCCCTTGTTGA 59.621 57.895 0.00 0.00 0.00 3.18
621 633 0.251165 GTAGCTGCCCCCTTGTTGAA 60.251 55.000 0.00 0.00 0.00 2.69
622 634 0.480690 TAGCTGCCCCCTTGTTGAAA 59.519 50.000 0.00 0.00 0.00 2.69
623 635 0.398381 AGCTGCCCCCTTGTTGAAAA 60.398 50.000 0.00 0.00 0.00 2.29
641 653 8.046841 GTTGAAAACGTTCTATTTCTTGAACC 57.953 34.615 0.00 0.00 39.30 3.62
642 654 7.323049 TGAAAACGTTCTATTTCTTGAACCA 57.677 32.000 0.00 0.00 39.30 3.67
643 655 7.936584 TGAAAACGTTCTATTTCTTGAACCAT 58.063 30.769 0.00 0.00 39.30 3.55
644 656 7.860373 TGAAAACGTTCTATTTCTTGAACCATG 59.140 33.333 0.00 0.00 39.30 3.66
645 657 5.296813 ACGTTCTATTTCTTGAACCATGC 57.703 39.130 0.00 0.00 39.30 4.06
646 658 4.759693 ACGTTCTATTTCTTGAACCATGCA 59.240 37.500 0.00 0.00 39.30 3.96
647 659 5.415701 ACGTTCTATTTCTTGAACCATGCAT 59.584 36.000 0.00 0.00 39.30 3.96
648 660 5.967674 CGTTCTATTTCTTGAACCATGCATC 59.032 40.000 0.00 0.00 39.30 3.91
649 661 6.268566 GTTCTATTTCTTGAACCATGCATCC 58.731 40.000 0.00 0.00 37.26 3.51
650 662 5.508567 TCTATTTCTTGAACCATGCATCCA 58.491 37.500 0.00 0.00 0.00 3.41
651 663 5.951148 TCTATTTCTTGAACCATGCATCCAA 59.049 36.000 0.00 0.00 0.00 3.53
652 664 4.952071 TTTCTTGAACCATGCATCCAAA 57.048 36.364 0.00 0.00 0.00 3.28
653 665 5.486735 TTTCTTGAACCATGCATCCAAAT 57.513 34.783 0.00 0.00 0.00 2.32
654 666 4.459390 TCTTGAACCATGCATCCAAATG 57.541 40.909 0.00 0.00 35.87 2.32
663 675 2.179764 CATCCAAATGCCGAACCGT 58.820 52.632 0.00 0.00 0.00 4.83
664 676 0.098728 CATCCAAATGCCGAACCGTC 59.901 55.000 0.00 0.00 0.00 4.79
665 677 0.035439 ATCCAAATGCCGAACCGTCT 60.035 50.000 0.00 0.00 0.00 4.18
666 678 0.250553 TCCAAATGCCGAACCGTCTT 60.251 50.000 0.00 0.00 0.00 3.01
667 679 0.168128 CCAAATGCCGAACCGTCTTC 59.832 55.000 0.00 0.00 0.00 2.87
668 680 0.871722 CAAATGCCGAACCGTCTTCA 59.128 50.000 0.00 0.00 0.00 3.02
669 681 1.468520 CAAATGCCGAACCGTCTTCAT 59.531 47.619 0.00 0.00 0.00 2.57
670 682 2.675844 CAAATGCCGAACCGTCTTCATA 59.324 45.455 0.00 0.00 0.00 2.15
671 683 2.684001 ATGCCGAACCGTCTTCATAA 57.316 45.000 0.00 0.00 0.00 1.90
672 684 2.684001 TGCCGAACCGTCTTCATAAT 57.316 45.000 0.00 0.00 0.00 1.28
673 685 2.980568 TGCCGAACCGTCTTCATAATT 58.019 42.857 0.00 0.00 0.00 1.40
674 686 2.675844 TGCCGAACCGTCTTCATAATTG 59.324 45.455 0.00 0.00 0.00 2.32
675 687 2.933906 GCCGAACCGTCTTCATAATTGA 59.066 45.455 0.00 0.00 0.00 2.57
676 688 3.372822 GCCGAACCGTCTTCATAATTGAA 59.627 43.478 0.00 0.00 39.54 2.69
677 689 4.035208 GCCGAACCGTCTTCATAATTGAAT 59.965 41.667 0.00 0.00 40.95 2.57
678 690 5.448632 GCCGAACCGTCTTCATAATTGAATT 60.449 40.000 0.00 0.00 40.95 2.17
679 691 6.551736 CCGAACCGTCTTCATAATTGAATTT 58.448 36.000 0.00 0.00 40.95 1.82
680 692 6.687105 CCGAACCGTCTTCATAATTGAATTTC 59.313 38.462 0.00 0.00 40.95 2.17
681 693 6.687105 CGAACCGTCTTCATAATTGAATTTCC 59.313 38.462 0.00 0.00 40.95 3.13
682 694 6.451064 ACCGTCTTCATAATTGAATTTCCC 57.549 37.500 0.00 0.00 40.95 3.97
683 695 5.065988 ACCGTCTTCATAATTGAATTTCCCG 59.934 40.000 0.00 0.00 40.95 5.14
684 696 5.065988 CCGTCTTCATAATTGAATTTCCCGT 59.934 40.000 0.00 0.00 40.95 5.28
685 697 5.965334 CGTCTTCATAATTGAATTTCCCGTG 59.035 40.000 0.00 0.00 40.95 4.94
686 698 6.403200 CGTCTTCATAATTGAATTTCCCGTGT 60.403 38.462 0.00 0.00 40.95 4.49
687 699 7.312899 GTCTTCATAATTGAATTTCCCGTGTT 58.687 34.615 0.00 0.00 40.95 3.32
688 700 8.455682 GTCTTCATAATTGAATTTCCCGTGTTA 58.544 33.333 0.00 0.00 40.95 2.41
689 701 9.015367 TCTTCATAATTGAATTTCCCGTGTTAA 57.985 29.630 0.00 0.00 40.95 2.01
690 702 8.973835 TTCATAATTGAATTTCCCGTGTTAAC 57.026 30.769 0.00 0.00 36.94 2.01
691 703 8.112016 TCATAATTGAATTTCCCGTGTTAACA 57.888 30.769 3.59 3.59 0.00 2.41
692 704 8.744652 TCATAATTGAATTTCCCGTGTTAACAT 58.255 29.630 12.26 0.00 0.00 2.71
693 705 8.806634 CATAATTGAATTTCCCGTGTTAACATG 58.193 33.333 19.09 19.09 0.00 3.21
694 706 5.776173 TTGAATTTCCCGTGTTAACATGT 57.224 34.783 22.97 6.57 0.00 3.21
695 707 5.776173 TGAATTTCCCGTGTTAACATGTT 57.224 34.783 22.97 16.68 0.00 2.71
696 708 6.150396 TGAATTTCCCGTGTTAACATGTTT 57.850 33.333 22.97 10.57 0.00 2.83
697 709 6.210078 TGAATTTCCCGTGTTAACATGTTTC 58.790 36.000 22.97 16.91 0.00 2.78
698 710 3.881780 TTCCCGTGTTAACATGTTTCG 57.118 42.857 22.97 15.62 0.00 3.46
699 711 3.109044 TCCCGTGTTAACATGTTTCGA 57.891 42.857 22.97 11.81 0.00 3.71
700 712 2.801679 TCCCGTGTTAACATGTTTCGAC 59.198 45.455 22.97 13.36 0.00 4.20
701 713 2.544686 CCCGTGTTAACATGTTTCGACA 59.455 45.455 22.97 15.66 0.00 4.35
702 714 3.002451 CCCGTGTTAACATGTTTCGACAA 59.998 43.478 22.97 1.09 0.00 3.18
703 715 4.496010 CCCGTGTTAACATGTTTCGACAAA 60.496 41.667 22.97 0.29 0.00 2.83
704 716 4.435231 CCGTGTTAACATGTTTCGACAAAC 59.565 41.667 22.97 13.76 42.16 2.93
705 717 5.260140 CGTGTTAACATGTTTCGACAAACT 58.740 37.500 17.78 0.00 42.29 2.66
706 718 5.735427 CGTGTTAACATGTTTCGACAAACTT 59.265 36.000 17.78 0.00 42.29 2.66
707 719 6.249682 CGTGTTAACATGTTTCGACAAACTTT 59.750 34.615 17.78 0.00 42.29 2.66
708 720 7.201282 CGTGTTAACATGTTTCGACAAACTTTT 60.201 33.333 17.78 0.00 42.29 2.27
709 721 8.429299 GTGTTAACATGTTTCGACAAACTTTTT 58.571 29.630 17.78 0.00 42.29 1.94
710 722 8.640291 TGTTAACATGTTTCGACAAACTTTTTC 58.360 29.630 17.78 0.00 42.29 2.29
711 723 6.641176 AACATGTTTCGACAAACTTTTTCC 57.359 33.333 4.92 0.00 42.29 3.13
712 724 5.715070 ACATGTTTCGACAAACTTTTTCCA 58.285 33.333 0.00 0.00 42.29 3.53
713 725 5.804979 ACATGTTTCGACAAACTTTTTCCAG 59.195 36.000 0.00 0.00 42.29 3.86
714 726 5.630661 TGTTTCGACAAACTTTTTCCAGA 57.369 34.783 1.96 0.00 42.29 3.86
715 727 5.636837 TGTTTCGACAAACTTTTTCCAGAG 58.363 37.500 1.96 0.00 42.29 3.35
716 728 5.182380 TGTTTCGACAAACTTTTTCCAGAGT 59.818 36.000 1.96 0.00 42.29 3.24
717 729 5.890424 TTCGACAAACTTTTTCCAGAGTT 57.110 34.783 0.00 0.00 37.69 3.01
718 730 5.229921 TCGACAAACTTTTTCCAGAGTTG 57.770 39.130 0.00 0.00 36.31 3.16
719 731 3.791353 CGACAAACTTTTTCCAGAGTTGC 59.209 43.478 0.00 0.00 36.31 4.17
720 732 4.438744 CGACAAACTTTTTCCAGAGTTGCT 60.439 41.667 0.00 0.00 36.31 3.91
721 733 5.405935 ACAAACTTTTTCCAGAGTTGCTT 57.594 34.783 0.00 0.00 36.31 3.91
722 734 5.410924 ACAAACTTTTTCCAGAGTTGCTTC 58.589 37.500 0.00 0.00 36.31 3.86
723 735 4.655762 AACTTTTTCCAGAGTTGCTTCC 57.344 40.909 0.00 0.00 34.96 3.46
724 736 2.618709 ACTTTTTCCAGAGTTGCTTCCG 59.381 45.455 0.00 0.00 0.00 4.30
725 737 1.604604 TTTTCCAGAGTTGCTTCCGG 58.395 50.000 0.00 0.00 0.00 5.14
726 738 0.250727 TTTCCAGAGTTGCTTCCGGG 60.251 55.000 0.00 0.00 0.00 5.73
727 739 2.747855 CCAGAGTTGCTTCCGGGC 60.748 66.667 0.00 0.00 0.00 6.13
728 740 2.747855 CAGAGTTGCTTCCGGGCC 60.748 66.667 0.00 0.00 0.00 5.80
729 741 4.394712 AGAGTTGCTTCCGGGCCG 62.395 66.667 21.46 21.46 0.00 6.13
730 742 4.388499 GAGTTGCTTCCGGGCCGA 62.388 66.667 30.79 11.12 0.00 5.54
731 743 4.394712 AGTTGCTTCCGGGCCGAG 62.395 66.667 30.79 19.42 0.00 4.63
753 765 3.197790 CTCACGCCATCAAGCCGG 61.198 66.667 0.00 0.00 0.00 6.13
1029 1044 3.358076 CTTCGCCGTCACTCCCTCC 62.358 68.421 0.00 0.00 0.00 4.30
1032 1047 3.827898 GCCGTCACTCCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
1045 1060 2.361438 CCCTCCTCGTCCATGTAAGTAC 59.639 54.545 0.00 0.00 0.00 2.73
1046 1061 3.021695 CCTCCTCGTCCATGTAAGTACA 58.978 50.000 0.00 0.00 40.98 2.90
1087 1102 0.032017 TCAAGCTCCCCTCTCTACCC 60.032 60.000 0.00 0.00 0.00 3.69
1109 1124 4.229876 CGTTTCTTGCTGATTTTCTTCCC 58.770 43.478 0.00 0.00 0.00 3.97
1195 1210 0.461339 GCGCCGAGGTTCTTCCATAA 60.461 55.000 0.00 0.00 39.02 1.90
1212 1227 2.837532 TAACCGGAACCAAGGTACAC 57.162 50.000 9.46 0.00 40.37 2.90
1286 1304 2.417516 ATCGTGGGGCTCGATTCG 59.582 61.111 0.00 0.00 43.98 3.34
1287 1305 3.151958 ATCGTGGGGCTCGATTCGG 62.152 63.158 6.18 0.00 43.98 4.30
1288 1306 3.833645 CGTGGGGCTCGATTCGGA 61.834 66.667 6.18 0.00 0.00 4.55
1291 1309 2.417936 GGGGCTCGATTCGGACTC 59.582 66.667 6.18 0.00 0.00 3.36
1298 1325 2.254459 CTCGATTCGGACTCAAGTGTG 58.746 52.381 6.18 0.00 0.00 3.82
1322 1349 5.543507 AGATGAGTCCAATGTTAGGCTAG 57.456 43.478 0.00 0.00 0.00 3.42
1347 1374 2.811317 CTGAGTCAAGCCGGCGAC 60.811 66.667 23.20 22.80 0.00 5.19
1362 1389 2.827604 CGACACGCTGAACCAGATT 58.172 52.632 0.00 0.00 32.44 2.40
1373 1400 4.122776 CTGAACCAGATTAGGAATGGTCG 58.877 47.826 0.00 0.00 46.56 4.79
1376 1403 4.138487 ACCAGATTAGGAATGGTCGTTC 57.862 45.455 0.00 0.00 43.94 3.95
1377 1404 3.123804 CCAGATTAGGAATGGTCGTTCG 58.876 50.000 0.00 0.00 0.00 3.95
1381 1408 4.868734 AGATTAGGAATGGTCGTTCGTTTC 59.131 41.667 3.89 3.19 0.00 2.78
1387 1414 0.179067 TGGTCGTTCGTTTCTTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
1388 1415 0.234884 GGTCGTTCGTTTCTTGGCTG 59.765 55.000 0.00 0.00 0.00 4.85
1389 1416 0.234884 GTCGTTCGTTTCTTGGCTGG 59.765 55.000 0.00 0.00 0.00 4.85
1390 1417 1.082104 CGTTCGTTTCTTGGCTGGC 60.082 57.895 0.00 0.00 0.00 4.85
1395 1422 1.593265 GTTTCTTGGCTGGCCCATG 59.407 57.895 9.28 0.00 44.89 3.66
1401 1428 2.439156 GGCTGGCCCATGACTCAC 60.439 66.667 0.00 0.00 0.00 3.51
1428 1455 4.440826 ACTTGGTGTGGTGGTTAATGTA 57.559 40.909 0.00 0.00 0.00 2.29
1433 1480 5.636123 TGGTGTGGTGGTTAATGTAGAAAT 58.364 37.500 0.00 0.00 0.00 2.17
1448 1495 2.356135 AGAAATTGCACCGCGAATAGT 58.644 42.857 8.23 0.00 0.00 2.12
1452 1499 0.800012 TTGCACCGCGAATAGTTTCC 59.200 50.000 8.23 0.00 0.00 3.13
1479 1526 8.361592 GCAATGCTGAATGCTTATTTATTTCT 57.638 30.769 0.00 0.00 43.37 2.52
1480 1527 9.467258 GCAATGCTGAATGCTTATTTATTTCTA 57.533 29.630 0.00 0.00 43.37 2.10
1540 1622 2.943653 GCACGTTGCTGTACCCAC 59.056 61.111 0.00 0.00 40.96 4.61
1549 1631 0.252057 GCTGTACCCACCCCCAAATT 60.252 55.000 0.00 0.00 0.00 1.82
1583 1665 5.743636 ATTTGCACATCTTGTGGGTAAAT 57.256 34.783 9.48 1.34 46.98 1.40
1590 1672 5.707298 CACATCTTGTGGGTAAATTGACTCT 59.293 40.000 0.00 0.00 44.27 3.24
1594 1676 4.698201 TGTGGGTAAATTGACTCTGTGA 57.302 40.909 0.00 0.00 0.00 3.58
1595 1677 4.641396 TGTGGGTAAATTGACTCTGTGAG 58.359 43.478 0.00 0.00 35.52 3.51
1596 1678 4.102524 TGTGGGTAAATTGACTCTGTGAGT 59.897 41.667 0.00 0.00 46.42 3.41
1597 1679 5.063880 GTGGGTAAATTGACTCTGTGAGTT 58.936 41.667 1.58 0.00 43.53 3.01
1598 1680 5.179555 GTGGGTAAATTGACTCTGTGAGTTC 59.820 44.000 1.58 0.00 43.53 3.01
1599 1681 4.695928 GGGTAAATTGACTCTGTGAGTTCC 59.304 45.833 1.58 0.00 43.53 3.62
1600 1682 5.513267 GGGTAAATTGACTCTGTGAGTTCCT 60.513 44.000 1.58 0.00 43.53 3.36
1601 1683 5.639931 GGTAAATTGACTCTGTGAGTTCCTC 59.360 44.000 1.58 0.00 43.53 3.71
1602 1684 5.559148 AAATTGACTCTGTGAGTTCCTCT 57.441 39.130 1.58 0.00 43.53 3.69
1603 1685 4.533919 ATTGACTCTGTGAGTTCCTCTG 57.466 45.455 1.58 0.00 43.53 3.35
1604 1686 1.615883 TGACTCTGTGAGTTCCTCTGC 59.384 52.381 1.58 0.00 43.53 4.26
1605 1687 1.892474 GACTCTGTGAGTTCCTCTGCT 59.108 52.381 1.58 0.00 43.53 4.24
1610 1692 3.001414 CTGTGAGTTCCTCTGCTGATTG 58.999 50.000 0.00 0.00 0.00 2.67
1613 1695 0.990374 AGTTCCTCTGCTGATTGGCT 59.010 50.000 0.00 0.00 0.00 4.75
1616 1698 2.165357 TCCTCTGCTGATTGGCTCTA 57.835 50.000 0.00 0.00 0.00 2.43
1659 1741 1.303561 GAGGCCACTGATTGCACCA 60.304 57.895 5.01 0.00 0.00 4.17
1661 1743 0.968901 AGGCCACTGATTGCACCATG 60.969 55.000 5.01 0.00 0.00 3.66
1663 1745 0.604578 GCCACTGATTGCACCATGTT 59.395 50.000 0.00 0.00 0.00 2.71
1675 1757 8.127327 TGATTGCACCATGTTTTAAAATGTTTG 58.873 29.630 3.52 1.05 0.00 2.93
1676 1758 6.369059 TGCACCATGTTTTAAAATGTTTGG 57.631 33.333 3.52 10.80 0.00 3.28
1694 1777 1.680735 TGGTGTCCAATGAACTTGCAC 59.319 47.619 0.00 0.00 33.20 4.57
1716 1799 5.343058 CACGCCTTTGTTATTTTGTCATCTG 59.657 40.000 0.00 0.00 0.00 2.90
1717 1800 5.009610 ACGCCTTTGTTATTTTGTCATCTGT 59.990 36.000 0.00 0.00 0.00 3.41
1718 1801 5.920273 CGCCTTTGTTATTTTGTCATCTGTT 59.080 36.000 0.00 0.00 0.00 3.16
1719 1802 7.081349 CGCCTTTGTTATTTTGTCATCTGTTA 58.919 34.615 0.00 0.00 0.00 2.41
1720 1803 7.271223 CGCCTTTGTTATTTTGTCATCTGTTAG 59.729 37.037 0.00 0.00 0.00 2.34
1721 1804 8.082242 GCCTTTGTTATTTTGTCATCTGTTAGT 58.918 33.333 0.00 0.00 0.00 2.24
1722 1805 9.965824 CCTTTGTTATTTTGTCATCTGTTAGTT 57.034 29.630 0.00 0.00 0.00 2.24
1727 1810 9.543018 GTTATTTTGTCATCTGTTAGTTGCTAC 57.457 33.333 0.00 0.00 0.00 3.58
1733 1816 6.100004 GTCATCTGTTAGTTGCTACTTGCTA 58.900 40.000 6.03 0.00 43.37 3.49
1756 1839 7.062371 GCTAGTAGGCTGAATATATTGTTCGTG 59.938 40.741 1.78 0.00 0.00 4.35
1772 1855 1.686587 TCGTGATGTGTTCTGTCACCT 59.313 47.619 0.00 0.00 39.17 4.00
1775 1858 3.062763 GTGATGTGTTCTGTCACCTCTG 58.937 50.000 0.00 0.00 37.00 3.35
1777 1860 2.890808 TGTGTTCTGTCACCTCTGTC 57.109 50.000 0.00 0.00 37.51 3.51
1803 1886 6.624423 ACCTGTTCATGAAGCATAAATGTTC 58.376 36.000 8.80 0.00 0.00 3.18
1832 1915 9.667107 TTGCTGAACTAATAACTAATAAGTGCT 57.333 29.630 0.00 0.00 35.62 4.40
1833 1916 9.667107 TGCTGAACTAATAACTAATAAGTGCTT 57.333 29.630 0.00 0.00 35.62 3.91
1834 1917 9.922305 GCTGAACTAATAACTAATAAGTGCTTG 57.078 33.333 0.00 0.00 35.62 4.01
1835 1918 9.922305 CTGAACTAATAACTAATAAGTGCTTGC 57.078 33.333 0.00 0.00 35.62 4.01
1839 1922 9.238368 ACTAATAACTAATAAGTGCTTGCCAAA 57.762 29.630 0.00 0.00 35.62 3.28
1877 1960 2.458951 TGTTTTGATTGCAGCGAACAC 58.541 42.857 0.00 0.00 0.00 3.32
2057 2150 0.034670 AGAGCTTCCCACCTTGATGC 60.035 55.000 0.00 0.00 34.19 3.91
2111 2204 2.511659 CCACATTATCATGGCTGGGAG 58.488 52.381 0.00 0.00 34.27 4.30
2112 2205 1.884579 CACATTATCATGGCTGGGAGC 59.115 52.381 0.00 0.00 41.46 4.70
2201 2294 3.813443 CAAGCATTGCTATAGTGGGACT 58.187 45.455 12.39 0.00 40.39 3.85
2368 2461 1.966354 AGAGCTCACACACATCACAGA 59.034 47.619 17.77 0.00 0.00 3.41
2377 2470 3.066621 ACACACATCACAGAAAACGCAAT 59.933 39.130 0.00 0.00 0.00 3.56
2406 2499 1.969923 ACCCACAAACCAATGGACATG 59.030 47.619 6.16 4.20 38.34 3.21
2416 2509 0.677731 AATGGACATGTGAGCACGGG 60.678 55.000 1.15 0.00 0.00 5.28
2432 2525 1.968540 GGGCAGAAGAGCACACCAC 60.969 63.158 0.00 0.00 38.00 4.16
2511 2604 5.143369 TGAGTATGCTAGATCCAGTGTGAT 58.857 41.667 0.00 0.00 0.00 3.06
2534 2627 2.383527 CCAACGAAGAGAGCACGGC 61.384 63.158 0.00 0.00 0.00 5.68
2541 2634 0.392193 AAGAGAGCACGGCATTCCAG 60.392 55.000 0.00 0.00 0.00 3.86
2621 2714 1.303155 GCTGCCAAGAAGCCACTCT 60.303 57.895 0.00 0.00 34.45 3.24
2658 2751 7.968405 AGTTTGATATGTTCTTTTATTGTCCGC 59.032 33.333 0.00 0.00 0.00 5.54
2705 2877 1.134220 ACTGAACACCGAGCCTGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
2710 2882 1.072331 ACACCGAGCCTGAAAACTCAT 59.928 47.619 0.00 0.00 32.98 2.90
2711 2883 1.466167 CACCGAGCCTGAAAACTCATG 59.534 52.381 0.00 0.00 32.98 3.07
2761 2933 6.932356 AGAGTATTATCCAACAGTTGCATG 57.068 37.500 7.88 0.00 0.00 4.06
2767 2939 2.585330 TCCAACAGTTGCATGTCATGT 58.415 42.857 14.26 0.00 31.50 3.21
2930 3102 3.878160 CTAGAAAGGACACTCCCTGAC 57.122 52.381 0.00 0.00 37.19 3.51
3016 3188 5.355350 CCTTATGTGACAAGGTGATCTTTCC 59.645 44.000 0.00 0.00 38.21 3.13
3067 3240 7.549134 TGCAGTGTTAGTGATTTATCCTACAAG 59.451 37.037 0.00 0.00 0.00 3.16
3123 3296 1.676678 GATGGCCACGCAGACCTCTA 61.677 60.000 8.16 0.00 0.00 2.43
3135 3308 4.391830 CGCAGACCTCTAACAAAAATAGCA 59.608 41.667 0.00 0.00 0.00 3.49
3165 3338 1.344763 AGAAACAGCTACTTGGTCGCT 59.655 47.619 0.00 0.00 34.94 4.93
3208 3381 1.459592 CTTCGGAAACAGGTACTTGCG 59.540 52.381 4.65 2.54 34.60 4.85
3224 3397 7.012610 AGGTACTTGCGTTGTTTAATTGTTACT 59.987 33.333 0.00 0.00 27.25 2.24
3231 3404 6.741358 GCGTTGTTTAATTGTTACTGGATCTC 59.259 38.462 0.00 0.00 0.00 2.75
3245 3418 0.179137 GATCTCGTGTGATCCGTGCA 60.179 55.000 1.41 0.00 37.47 4.57
3256 3429 6.375377 GTGTGATCCGTGCAAATAAGTTAAA 58.625 36.000 0.00 0.00 0.00 1.52
3424 3597 1.420138 ACAATCTGGGACGTCCTTGTT 59.580 47.619 32.52 19.09 36.20 2.83
3447 3620 5.933617 TGATCCTTCCTATCAGGTGAATTG 58.066 41.667 0.00 0.00 36.53 2.32
3509 3683 7.582435 ACTAGTTGTTGTATCAAGATTCGTG 57.418 36.000 0.00 0.00 0.00 4.35
3510 3684 5.283060 AGTTGTTGTATCAAGATTCGTGC 57.717 39.130 0.00 0.00 0.00 5.34
3616 3790 3.599343 GGACATCAGCAACATCACACTA 58.401 45.455 0.00 0.00 0.00 2.74
3622 3796 3.120234 TCAGCAACATCACACTATTTGCG 60.120 43.478 0.00 0.00 45.77 4.85
3651 3825 1.031235 GGTACTTCTCTAGCGGACCC 58.969 60.000 0.00 0.00 0.00 4.46
3654 3828 0.252103 ACTTCTCTAGCGGACCCCAA 60.252 55.000 0.00 0.00 0.00 4.12
3655 3829 0.175989 CTTCTCTAGCGGACCCCAAC 59.824 60.000 0.00 0.00 0.00 3.77
3656 3830 0.252103 TTCTCTAGCGGACCCCAACT 60.252 55.000 0.00 0.00 0.00 3.16
3657 3831 0.252103 TCTCTAGCGGACCCCAACTT 60.252 55.000 0.00 0.00 0.00 2.66
3658 3832 0.108138 CTCTAGCGGACCCCAACTTG 60.108 60.000 0.00 0.00 0.00 3.16
3659 3833 0.834687 TCTAGCGGACCCCAACTTGT 60.835 55.000 0.00 0.00 0.00 3.16
3660 3834 0.036306 CTAGCGGACCCCAACTTGTT 59.964 55.000 0.00 0.00 0.00 2.83
3661 3835 0.475044 TAGCGGACCCCAACTTGTTT 59.525 50.000 0.00 0.00 0.00 2.83
3662 3836 1.106944 AGCGGACCCCAACTTGTTTG 61.107 55.000 0.00 0.00 34.63 2.93
3671 3845 2.514205 CAACTTGTTTGGGGCTGAAG 57.486 50.000 0.00 0.00 0.00 3.02
3672 3846 1.069049 CAACTTGTTTGGGGCTGAAGG 59.931 52.381 0.00 0.00 0.00 3.46
3673 3847 0.469892 ACTTGTTTGGGGCTGAAGGG 60.470 55.000 0.00 0.00 0.00 3.95
3674 3848 1.820010 CTTGTTTGGGGCTGAAGGGC 61.820 60.000 0.00 0.00 40.05 5.19
3675 3849 2.118294 GTTTGGGGCTGAAGGGCT 59.882 61.111 0.00 0.00 40.65 5.19
3677 3851 1.121407 GTTTGGGGCTGAAGGGCTTT 61.121 55.000 0.00 0.00 40.65 3.51
3678 3852 1.120795 TTTGGGGCTGAAGGGCTTTG 61.121 55.000 0.00 0.00 40.65 2.77
3679 3853 2.118294 GGGGCTGAAGGGCTTTGT 59.882 61.111 0.00 0.00 40.65 2.83
3680 3854 1.533994 GGGGCTGAAGGGCTTTGTT 60.534 57.895 0.00 0.00 40.65 2.83
3682 3856 1.619704 GGGGCTGAAGGGCTTTGTTAT 60.620 52.381 0.00 0.00 40.65 1.89
3683 3857 2.179427 GGGCTGAAGGGCTTTGTTATT 58.821 47.619 0.00 0.00 40.65 1.40
3684 3858 2.094026 GGGCTGAAGGGCTTTGTTATTG 60.094 50.000 0.00 0.00 40.65 1.90
3686 3860 3.006859 GGCTGAAGGGCTTTGTTATTGTT 59.993 43.478 0.00 0.00 37.53 2.83
3687 3861 3.989817 GCTGAAGGGCTTTGTTATTGTTG 59.010 43.478 0.00 0.00 0.00 3.33
3688 3862 4.501400 GCTGAAGGGCTTTGTTATTGTTGT 60.501 41.667 0.00 0.00 0.00 3.32
3689 3863 5.600696 CTGAAGGGCTTTGTTATTGTTGTT 58.399 37.500 0.00 0.00 0.00 2.83
3690 3864 5.355596 TGAAGGGCTTTGTTATTGTTGTTG 58.644 37.500 0.00 0.00 0.00 3.33
3691 3865 5.105146 TGAAGGGCTTTGTTATTGTTGTTGT 60.105 36.000 0.00 0.00 0.00 3.32
3692 3866 5.351948 AGGGCTTTGTTATTGTTGTTGTT 57.648 34.783 0.00 0.00 0.00 2.83
3694 3868 6.879400 AGGGCTTTGTTATTGTTGTTGTTAA 58.121 32.000 0.00 0.00 0.00 2.01
3698 3872 8.821894 GGCTTTGTTATTGTTGTTGTTAATTGA 58.178 29.630 0.00 0.00 0.00 2.57
3707 3925 7.033530 TGTTGTTGTTAATTGATTTCCTCGT 57.966 32.000 0.00 0.00 0.00 4.18
3708 3926 8.155821 TGTTGTTGTTAATTGATTTCCTCGTA 57.844 30.769 0.00 0.00 0.00 3.43
3742 3960 4.961622 GCACATCGATGCGTTCTG 57.038 55.556 25.11 15.88 35.50 3.02
3743 3961 1.297158 GCACATCGATGCGTTCTGC 60.297 57.895 25.11 21.35 46.70 4.26
3744 3962 1.699656 GCACATCGATGCGTTCTGCT 61.700 55.000 25.11 0.00 46.63 4.24
3747 3965 1.129251 ACATCGATGCGTTCTGCTTTG 59.871 47.619 25.11 0.00 46.63 2.77
3748 3966 1.129251 CATCGATGCGTTCTGCTTTGT 59.871 47.619 13.37 0.00 46.63 2.83
3759 3983 2.349755 GCTTTGTGGTAGCGGGGA 59.650 61.111 0.00 0.00 0.00 4.81
3763 3987 1.957877 CTTTGTGGTAGCGGGGAAAAA 59.042 47.619 0.00 0.00 0.00 1.94
3773 3997 1.134818 GCGGGGAAAAATGGATGTTCC 60.135 52.381 0.00 0.00 40.16 3.62
3778 4002 3.498082 GGAAAAATGGATGTTCCGTTCG 58.502 45.455 1.63 0.00 44.59 3.95
3780 4004 4.542735 GAAAAATGGATGTTCCGTTCGTT 58.457 39.130 1.63 0.53 44.59 3.85
3837 4061 1.398390 GTTTCATCAGGCTGCTAACGG 59.602 52.381 10.34 0.00 0.00 4.44
3847 4071 2.223340 GGCTGCTAACGGATCATTGTTG 60.223 50.000 0.00 0.96 0.00 3.33
4039 4275 3.314635 GCTCCAGTGCAGAAGAATATTGG 59.685 47.826 0.00 0.00 0.00 3.16
4094 4337 1.516821 CCGATGGCCATTTGCAACG 60.517 57.895 21.84 17.07 43.89 4.10
4103 4346 0.664166 CATTTGCAACGTCTGGTGCC 60.664 55.000 0.00 0.00 0.00 5.01
4163 4418 6.127140 TGCTAGGAAGTAAAGTATCCCTGTTC 60.127 42.308 0.00 0.00 33.55 3.18
4191 4446 3.607370 GAAGGAGACGGCCACACCC 62.607 68.421 2.24 0.00 33.26 4.61
4219 4477 7.926555 ACATTATTATACCGTGGAAGTCAAGAG 59.073 37.037 0.00 0.00 0.00 2.85
4224 4482 2.289694 ACCGTGGAAGTCAAGAGATTGG 60.290 50.000 0.00 0.00 0.00 3.16
4228 4486 4.646572 GTGGAAGTCAAGAGATTGGTCTT 58.353 43.478 0.00 0.00 37.25 3.01
4229 4487 4.693095 GTGGAAGTCAAGAGATTGGTCTTC 59.307 45.833 13.22 13.22 34.38 2.87
4230 4488 4.257731 GGAAGTCAAGAGATTGGTCTTCC 58.742 47.826 19.33 19.33 41.20 3.46
4290 4548 0.029035 CTCGGTCGGTCCAGTAATCG 59.971 60.000 0.00 0.00 35.57 3.34
4297 4555 0.533951 GGTCCAGTAATCGGTCGGTT 59.466 55.000 0.00 0.00 0.00 4.44
4299 4557 2.613725 GGTCCAGTAATCGGTCGGTTTT 60.614 50.000 0.00 0.00 0.00 2.43
4300 4558 2.669924 GTCCAGTAATCGGTCGGTTTTC 59.330 50.000 0.00 0.00 0.00 2.29
4301 4559 2.564062 TCCAGTAATCGGTCGGTTTTCT 59.436 45.455 0.00 0.00 0.00 2.52
4303 4561 2.671396 CAGTAATCGGTCGGTTTTCTGG 59.329 50.000 0.00 0.00 0.00 3.86
4304 4562 2.564062 AGTAATCGGTCGGTTTTCTGGA 59.436 45.455 0.00 0.00 0.00 3.86
4305 4563 1.804601 AATCGGTCGGTTTTCTGGAC 58.195 50.000 0.00 0.00 0.00 4.02
4306 4564 0.974383 ATCGGTCGGTTTTCTGGACT 59.026 50.000 0.00 0.00 0.00 3.85
4307 4565 0.032952 TCGGTCGGTTTTCTGGACTG 59.967 55.000 0.00 0.00 0.00 3.51
4309 4567 1.808891 CGGTCGGTTTTCTGGACTGTT 60.809 52.381 0.00 0.00 0.00 3.16
4311 4569 2.289820 GGTCGGTTTTCTGGACTGTTTC 59.710 50.000 0.00 0.00 0.00 2.78
4317 4575 4.580580 GGTTTTCTGGACTGTTTCTGTCAT 59.419 41.667 8.51 0.00 34.69 3.06
4345 4603 2.666508 GTGAGATTTTTCGAGCAGCGTA 59.333 45.455 0.00 0.00 41.80 4.42
4352 4619 3.430333 TTTCGAGCAGCGTATGTATGA 57.570 42.857 0.00 0.00 41.80 2.15
4356 4623 3.052745 CGAGCAGCGTATGTATGAATGT 58.947 45.455 0.00 0.00 34.64 2.71
4364 4631 6.479990 CAGCGTATGTATGAATGTATATGGGG 59.520 42.308 0.00 0.00 0.00 4.96
4372 4644 3.254903 TGAATGTATATGGGGTCGTCTCG 59.745 47.826 0.00 0.00 0.00 4.04
4406 4678 1.134461 CATCCACTGAAGCTGGAGAGG 60.134 57.143 0.00 0.00 41.24 3.69
4509 4781 4.072088 GCCGTCAACGACAAGCCG 62.072 66.667 3.71 0.00 43.02 5.52
4510 4782 2.660552 CCGTCAACGACAAGCCGT 60.661 61.111 3.71 0.00 45.64 5.68
4518 4790 4.389576 GACAAGCCGTTGCCGCTG 62.390 66.667 0.00 0.00 37.14 5.18
4559 4831 4.072088 CGCGTGCGTTCTTGACCC 62.072 66.667 6.00 0.00 34.35 4.46
4602 4874 2.188994 GCCCTGCAGCGATCTTCT 59.811 61.111 8.66 0.00 0.00 2.85
4603 4875 2.178890 GCCCTGCAGCGATCTTCTG 61.179 63.158 8.66 7.30 34.79 3.02
4610 4882 2.889503 GCGATCTTCTGCTGCGCT 60.890 61.111 9.73 0.00 43.85 5.92
4611 4883 1.589993 GCGATCTTCTGCTGCGCTA 60.590 57.895 9.73 0.00 43.85 4.26
4612 4884 1.816214 GCGATCTTCTGCTGCGCTAC 61.816 60.000 9.73 0.09 43.85 3.58
4614 4886 0.926846 GATCTTCTGCTGCGCTACAC 59.073 55.000 9.73 0.00 0.00 2.90
4616 4888 1.734477 CTTCTGCTGCGCTACACGT 60.734 57.895 9.73 0.00 46.11 4.49
4641 4913 0.454452 GCGCAAACCGATTCCAGAAC 60.454 55.000 0.30 0.00 40.02 3.01
4652 4924 2.004583 TTCCAGAACGCGAATAGTGG 57.995 50.000 15.93 12.14 33.90 4.00
4655 4927 0.370273 CAGAACGCGAATAGTGGTGC 59.630 55.000 15.93 0.00 33.90 5.01
4658 4930 0.037697 AACGCGAATAGTGGTGCAGA 60.038 50.000 15.93 0.00 33.90 4.26
4659 4931 0.458543 ACGCGAATAGTGGTGCAGAG 60.459 55.000 15.93 0.00 33.90 3.35
4660 4932 1.756375 CGCGAATAGTGGTGCAGAGC 61.756 60.000 0.00 0.00 0.00 4.09
4661 4933 0.740868 GCGAATAGTGGTGCAGAGCA 60.741 55.000 0.00 0.00 35.60 4.26
4679 4951 2.700371 AGCAGATATGATCCGTGGTTGA 59.300 45.455 0.00 0.00 0.00 3.18
4680 4952 3.326006 AGCAGATATGATCCGTGGTTGAT 59.674 43.478 0.00 0.00 0.00 2.57
4686 4958 1.271325 TGATCCGTGGTTGATTGCACT 60.271 47.619 0.00 0.00 0.00 4.40
4687 4959 1.398390 GATCCGTGGTTGATTGCACTC 59.602 52.381 0.00 0.00 0.00 3.51
4688 4960 0.605319 TCCGTGGTTGATTGCACTCC 60.605 55.000 1.11 0.00 0.00 3.85
4689 4961 0.888736 CCGTGGTTGATTGCACTCCA 60.889 55.000 1.11 0.00 0.00 3.86
4690 4962 0.238289 CGTGGTTGATTGCACTCCAC 59.762 55.000 1.11 7.96 41.67 4.02
4691 4963 0.238289 GTGGTTGATTGCACTCCACG 59.762 55.000 1.11 0.00 38.53 4.94
4692 4964 0.179032 TGGTTGATTGCACTCCACGT 60.179 50.000 1.11 0.00 0.00 4.49
4693 4965 0.951558 GGTTGATTGCACTCCACGTT 59.048 50.000 1.11 0.00 0.00 3.99
4694 4966 1.069227 GGTTGATTGCACTCCACGTTC 60.069 52.381 1.11 0.00 0.00 3.95
4695 4967 1.069227 GTTGATTGCACTCCACGTTCC 60.069 52.381 1.11 0.00 0.00 3.62
4696 4968 0.948623 TGATTGCACTCCACGTTCCG 60.949 55.000 1.11 0.00 0.00 4.30
4697 4969 0.669318 GATTGCACTCCACGTTCCGA 60.669 55.000 0.00 0.00 0.00 4.55
4698 4970 0.949105 ATTGCACTCCACGTTCCGAC 60.949 55.000 0.00 0.00 0.00 4.79
4699 4971 2.737376 GCACTCCACGTTCCGACC 60.737 66.667 0.00 0.00 0.00 4.79
4700 4972 2.732016 CACTCCACGTTCCGACCA 59.268 61.111 0.00 0.00 0.00 4.02
4701 4973 1.068417 CACTCCACGTTCCGACCAA 59.932 57.895 0.00 0.00 0.00 3.67
4705 4977 0.393448 TCCACGTTCCGACCAATCAA 59.607 50.000 0.00 0.00 0.00 2.57
4709 4981 1.202722 ACGTTCCGACCAATCAACCTT 60.203 47.619 0.00 0.00 0.00 3.50
4715 4987 1.539827 CGACCAATCAACCTTCAACCC 59.460 52.381 0.00 0.00 0.00 4.11
4717 4989 2.296190 GACCAATCAACCTTCAACCCAC 59.704 50.000 0.00 0.00 0.00 4.61
4718 4990 2.091333 ACCAATCAACCTTCAACCCACT 60.091 45.455 0.00 0.00 0.00 4.00
4719 4991 2.297033 CCAATCAACCTTCAACCCACTG 59.703 50.000 0.00 0.00 0.00 3.66
4729 5001 5.016173 CCTTCAACCCACTGGAATAAATGA 58.984 41.667 0.00 0.00 34.81 2.57
4732 5004 5.500234 TCAACCCACTGGAATAAATGAGAG 58.500 41.667 0.00 0.00 34.81 3.20
4733 5005 5.250543 TCAACCCACTGGAATAAATGAGAGA 59.749 40.000 0.00 0.00 34.81 3.10
4735 5007 4.133078 CCCACTGGAATAAATGAGAGAGC 58.867 47.826 0.00 0.00 0.00 4.09
4736 5008 4.141528 CCCACTGGAATAAATGAGAGAGCT 60.142 45.833 0.00 0.00 0.00 4.09
4737 5009 5.055812 CCACTGGAATAAATGAGAGAGCTC 58.944 45.833 5.27 5.27 41.67 4.09
4820 5096 3.112075 CGTGCGGGCTACACACAG 61.112 66.667 10.26 0.00 37.93 3.66
4821 5097 2.342279 GTGCGGGCTACACACAGA 59.658 61.111 5.71 0.00 37.96 3.41
4822 5098 2.027625 GTGCGGGCTACACACAGAC 61.028 63.158 5.71 0.00 37.96 3.51
4903 5181 1.209128 GGTGCGTGAATCGTGATAGG 58.791 55.000 0.00 0.00 42.13 2.57
4939 5217 0.461961 CCGACCATCCAGAAGAGGTC 59.538 60.000 0.00 0.00 45.46 3.85
4945 5223 3.135530 ACCATCCAGAAGAGGTCATTAGC 59.864 47.826 0.00 0.00 0.00 3.09
4946 5224 3.135348 CCATCCAGAAGAGGTCATTAGCA 59.865 47.826 0.00 0.00 0.00 3.49
4947 5225 4.202440 CCATCCAGAAGAGGTCATTAGCAT 60.202 45.833 0.00 0.00 0.00 3.79
4948 5226 4.679373 TCCAGAAGAGGTCATTAGCATC 57.321 45.455 0.00 0.00 0.00 3.91
4949 5227 4.033009 TCCAGAAGAGGTCATTAGCATCA 58.967 43.478 0.00 0.00 0.00 3.07
4950 5228 4.125703 CCAGAAGAGGTCATTAGCATCAC 58.874 47.826 0.00 0.00 0.00 3.06
4951 5229 4.383444 CCAGAAGAGGTCATTAGCATCACA 60.383 45.833 0.00 0.00 0.00 3.58
4952 5230 4.569966 CAGAAGAGGTCATTAGCATCACAC 59.430 45.833 0.00 0.00 0.00 3.82
4953 5231 3.170791 AGAGGTCATTAGCATCACACG 57.829 47.619 0.00 0.00 0.00 4.49
4954 5232 1.594862 GAGGTCATTAGCATCACACGC 59.405 52.381 0.00 0.00 0.00 5.34
4955 5233 0.657840 GGTCATTAGCATCACACGCC 59.342 55.000 0.00 0.00 0.00 5.68
4956 5234 0.657840 GTCATTAGCATCACACGCCC 59.342 55.000 0.00 0.00 0.00 6.13
4957 5235 0.541392 TCATTAGCATCACACGCCCT 59.459 50.000 0.00 0.00 0.00 5.19
4958 5236 1.065491 TCATTAGCATCACACGCCCTT 60.065 47.619 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.037121 TGAGAGAGACAAAACGCCATGA 59.963 45.455 0.00 0.00 0.00 3.07
44 45 5.777449 TCATCTAGTAGGAGATTTGGGTGA 58.223 41.667 0.00 0.00 33.75 4.02
183 184 0.663153 GTTTCAGAAACACTGCCGCT 59.337 50.000 19.46 0.00 45.38 5.52
251 252 6.662865 TTTGCCATGTTATTGAAGAAGGAA 57.337 33.333 0.00 0.00 0.00 3.36
371 374 1.674359 TGCAACCGTGATCTTGTTGT 58.326 45.000 17.67 0.00 41.04 3.32
398 401 0.814457 AACACAAGCCTTGTTGCGAA 59.186 45.000 7.51 0.00 43.23 4.70
452 458 2.099592 CCTCCATTATTGCAACGCATGT 59.900 45.455 0.00 0.00 38.76 3.21
616 628 7.698970 TGGTTCAAGAAATAGAACGTTTTCAAC 59.301 33.333 0.46 3.36 43.79 3.18
617 629 7.763356 TGGTTCAAGAAATAGAACGTTTTCAA 58.237 30.769 0.46 0.00 43.79 2.69
618 630 7.323049 TGGTTCAAGAAATAGAACGTTTTCA 57.677 32.000 0.46 0.00 43.79 2.69
619 631 7.148967 GCATGGTTCAAGAAATAGAACGTTTTC 60.149 37.037 0.46 1.92 43.79 2.29
620 632 6.640907 GCATGGTTCAAGAAATAGAACGTTTT 59.359 34.615 0.46 0.00 43.79 2.43
621 633 6.149633 GCATGGTTCAAGAAATAGAACGTTT 58.850 36.000 0.46 0.00 43.79 3.60
622 634 5.240623 TGCATGGTTCAAGAAATAGAACGTT 59.759 36.000 0.00 0.00 43.79 3.99
623 635 4.759693 TGCATGGTTCAAGAAATAGAACGT 59.240 37.500 0.00 0.00 43.79 3.99
624 636 5.295431 TGCATGGTTCAAGAAATAGAACG 57.705 39.130 0.00 0.00 43.79 3.95
625 637 6.127647 TGGATGCATGGTTCAAGAAATAGAAC 60.128 38.462 2.46 0.00 42.51 3.01
626 638 5.951148 TGGATGCATGGTTCAAGAAATAGAA 59.049 36.000 2.46 0.00 0.00 2.10
627 639 5.508567 TGGATGCATGGTTCAAGAAATAGA 58.491 37.500 2.46 0.00 0.00 1.98
628 640 5.840243 TGGATGCATGGTTCAAGAAATAG 57.160 39.130 2.46 0.00 0.00 1.73
629 641 6.602410 TTTGGATGCATGGTTCAAGAAATA 57.398 33.333 2.46 0.00 0.00 1.40
630 642 5.486735 TTTGGATGCATGGTTCAAGAAAT 57.513 34.783 2.46 0.00 0.00 2.17
631 643 4.952071 TTTGGATGCATGGTTCAAGAAA 57.048 36.364 2.46 0.00 0.00 2.52
632 644 4.823157 CATTTGGATGCATGGTTCAAGAA 58.177 39.130 2.46 0.00 0.00 2.52
633 645 4.459390 CATTTGGATGCATGGTTCAAGA 57.541 40.909 2.46 0.00 0.00 3.02
645 657 0.098728 GACGGTTCGGCATTTGGATG 59.901 55.000 0.00 0.00 33.63 3.51
646 658 0.035439 AGACGGTTCGGCATTTGGAT 60.035 50.000 0.00 0.00 37.34 3.41
647 659 0.250553 AAGACGGTTCGGCATTTGGA 60.251 50.000 0.00 0.00 37.34 3.53
648 660 0.168128 GAAGACGGTTCGGCATTTGG 59.832 55.000 0.00 0.00 37.34 3.28
649 661 0.871722 TGAAGACGGTTCGGCATTTG 59.128 50.000 0.00 0.00 37.34 2.32
650 662 1.821216 ATGAAGACGGTTCGGCATTT 58.179 45.000 0.00 0.00 37.34 2.32
651 663 2.684001 TATGAAGACGGTTCGGCATT 57.316 45.000 0.00 0.00 37.34 3.56
652 664 2.684001 TTATGAAGACGGTTCGGCAT 57.316 45.000 0.00 0.00 37.34 4.40
653 665 2.675844 CAATTATGAAGACGGTTCGGCA 59.324 45.455 0.00 0.00 37.34 5.69
654 666 2.933906 TCAATTATGAAGACGGTTCGGC 59.066 45.455 0.00 0.00 33.59 5.54
666 678 8.112016 TGTTAACACGGGAAATTCAATTATGA 57.888 30.769 3.59 0.00 0.00 2.15
667 679 8.806634 CATGTTAACACGGGAAATTCAATTATG 58.193 33.333 11.22 0.00 0.00 1.90
668 680 8.527810 ACATGTTAACACGGGAAATTCAATTAT 58.472 29.630 11.22 0.00 0.00 1.28
669 681 7.887381 ACATGTTAACACGGGAAATTCAATTA 58.113 30.769 11.22 0.00 0.00 1.40
670 682 6.754193 ACATGTTAACACGGGAAATTCAATT 58.246 32.000 11.22 0.00 0.00 2.32
671 683 6.339587 ACATGTTAACACGGGAAATTCAAT 57.660 33.333 11.22 0.00 0.00 2.57
672 684 5.776173 ACATGTTAACACGGGAAATTCAA 57.224 34.783 11.22 0.00 0.00 2.69
673 685 5.776173 AACATGTTAACACGGGAAATTCA 57.224 34.783 11.22 0.00 0.00 2.57
674 686 5.341196 CGAAACATGTTAACACGGGAAATTC 59.659 40.000 12.39 7.94 0.00 2.17
675 687 5.008811 TCGAAACATGTTAACACGGGAAATT 59.991 36.000 12.39 0.00 0.00 1.82
676 688 4.515944 TCGAAACATGTTAACACGGGAAAT 59.484 37.500 12.39 0.00 0.00 2.17
677 689 3.875727 TCGAAACATGTTAACACGGGAAA 59.124 39.130 12.39 0.00 0.00 3.13
678 690 3.248125 GTCGAAACATGTTAACACGGGAA 59.752 43.478 12.39 0.00 0.00 3.97
679 691 2.801679 GTCGAAACATGTTAACACGGGA 59.198 45.455 12.39 0.30 0.00 5.14
680 692 2.544686 TGTCGAAACATGTTAACACGGG 59.455 45.455 12.39 6.33 0.00 5.28
681 693 3.863396 TGTCGAAACATGTTAACACGG 57.137 42.857 12.39 8.94 0.00 4.94
682 694 5.260140 AGTTTGTCGAAACATGTTAACACG 58.740 37.500 12.39 14.62 43.51 4.49
683 695 7.500807 AAAGTTTGTCGAAACATGTTAACAC 57.499 32.000 12.39 8.90 43.51 3.32
684 696 8.522178 AAAAAGTTTGTCGAAACATGTTAACA 57.478 26.923 12.39 11.41 43.51 2.41
685 697 8.105742 GGAAAAAGTTTGTCGAAACATGTTAAC 58.894 33.333 12.39 11.17 43.51 2.01
686 698 7.813148 TGGAAAAAGTTTGTCGAAACATGTTAA 59.187 29.630 12.39 0.00 43.51 2.01
687 699 7.313646 TGGAAAAAGTTTGTCGAAACATGTTA 58.686 30.769 12.39 0.00 43.51 2.41
688 700 6.159988 TGGAAAAAGTTTGTCGAAACATGTT 58.840 32.000 4.92 4.92 43.51 2.71
689 701 5.715070 TGGAAAAAGTTTGTCGAAACATGT 58.285 33.333 0.00 0.00 43.51 3.21
690 702 6.033341 TCTGGAAAAAGTTTGTCGAAACATG 58.967 36.000 3.01 0.00 43.51 3.21
691 703 6.127730 ACTCTGGAAAAAGTTTGTCGAAACAT 60.128 34.615 3.01 0.00 43.51 2.71
692 704 5.182380 ACTCTGGAAAAAGTTTGTCGAAACA 59.818 36.000 3.01 0.00 43.51 2.83
693 705 5.637809 ACTCTGGAAAAAGTTTGTCGAAAC 58.362 37.500 0.00 0.00 41.69 2.78
694 706 5.890424 ACTCTGGAAAAAGTTTGTCGAAA 57.110 34.783 0.00 0.00 0.00 3.46
695 707 5.636837 CAACTCTGGAAAAAGTTTGTCGAA 58.363 37.500 0.00 0.00 33.53 3.71
696 708 4.438200 GCAACTCTGGAAAAAGTTTGTCGA 60.438 41.667 0.00 0.00 33.53 4.20
697 709 3.791353 GCAACTCTGGAAAAAGTTTGTCG 59.209 43.478 0.00 0.00 33.53 4.35
698 710 4.998788 AGCAACTCTGGAAAAAGTTTGTC 58.001 39.130 0.00 0.00 33.53 3.18
699 711 5.405935 AAGCAACTCTGGAAAAAGTTTGT 57.594 34.783 0.00 0.00 33.53 2.83
700 712 4.805719 GGAAGCAACTCTGGAAAAAGTTTG 59.194 41.667 0.00 0.00 33.53 2.93
701 713 4.440112 CGGAAGCAACTCTGGAAAAAGTTT 60.440 41.667 0.00 0.00 33.53 2.66
702 714 3.066760 CGGAAGCAACTCTGGAAAAAGTT 59.933 43.478 0.00 0.00 36.16 2.66
703 715 2.618709 CGGAAGCAACTCTGGAAAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
704 716 2.030805 CCGGAAGCAACTCTGGAAAAAG 60.031 50.000 0.00 0.00 43.68 2.27
705 717 1.953686 CCGGAAGCAACTCTGGAAAAA 59.046 47.619 0.00 0.00 43.68 1.94
706 718 1.604604 CCGGAAGCAACTCTGGAAAA 58.395 50.000 0.00 0.00 43.68 2.29
707 719 0.250727 CCCGGAAGCAACTCTGGAAA 60.251 55.000 0.73 0.00 43.68 3.13
708 720 1.374947 CCCGGAAGCAACTCTGGAA 59.625 57.895 0.73 0.00 43.68 3.53
709 721 3.068881 CCCGGAAGCAACTCTGGA 58.931 61.111 0.73 0.00 43.68 3.86
710 722 2.747855 GCCCGGAAGCAACTCTGG 60.748 66.667 0.73 2.14 41.03 3.86
711 723 2.747855 GGCCCGGAAGCAACTCTG 60.748 66.667 0.73 0.00 0.00 3.35
712 724 4.394712 CGGCCCGGAAGCAACTCT 62.395 66.667 0.73 0.00 0.00 3.24
713 725 4.388499 TCGGCCCGGAAGCAACTC 62.388 66.667 0.73 0.00 0.00 3.01
714 726 4.394712 CTCGGCCCGGAAGCAACT 62.395 66.667 0.73 0.00 0.00 3.16
715 727 4.699522 ACTCGGCCCGGAAGCAAC 62.700 66.667 0.73 0.00 0.00 4.17
716 728 4.697756 CACTCGGCCCGGAAGCAA 62.698 66.667 0.73 0.00 0.00 3.91
778 790 0.384725 CGAGCCGTGTTTTGCTGAAG 60.385 55.000 0.00 0.00 38.11 3.02
780 792 2.250939 CCGAGCCGTGTTTTGCTGA 61.251 57.895 0.00 0.00 38.11 4.26
782 794 1.098712 TTTCCGAGCCGTGTTTTGCT 61.099 50.000 0.00 0.00 41.42 3.91
1026 1041 3.695060 ACTGTACTTACATGGACGAGGAG 59.305 47.826 0.00 0.00 35.36 3.69
1029 1044 4.497674 GGCTACTGTACTTACATGGACGAG 60.498 50.000 0.00 0.00 35.36 4.18
1032 1047 3.181468 GGGGCTACTGTACTTACATGGAC 60.181 52.174 0.00 0.00 35.36 4.02
1045 1060 4.463891 ACTTGATTTGATTTGGGGCTACTG 59.536 41.667 0.00 0.00 0.00 2.74
1046 1061 4.677182 ACTTGATTTGATTTGGGGCTACT 58.323 39.130 0.00 0.00 0.00 2.57
1087 1102 4.022849 AGGGAAGAAAATCAGCAAGAAACG 60.023 41.667 0.00 0.00 0.00 3.60
1195 1210 0.107268 GTGTGTACCTTGGTTCCGGT 59.893 55.000 0.00 0.00 37.31 5.28
1212 1227 2.102420 GGGGAAGGGAAACAAAAGTGTG 59.898 50.000 0.00 0.00 38.27 3.82
1286 1304 4.264460 ACTCATCTTCACACTTGAGTCC 57.736 45.455 0.00 0.00 44.00 3.85
1291 1309 4.758674 ACATTGGACTCATCTTCACACTTG 59.241 41.667 0.00 0.00 0.00 3.16
1298 1325 4.775236 AGCCTAACATTGGACTCATCTTC 58.225 43.478 0.00 0.00 0.00 2.87
1322 1349 0.957888 GGCTTGACTCAGGTCCTTGC 60.958 60.000 0.00 0.00 41.47 4.01
1347 1374 2.672961 TCCTAATCTGGTTCAGCGTG 57.327 50.000 0.00 0.00 0.00 5.34
1356 1383 3.123804 CGAACGACCATTCCTAATCTGG 58.876 50.000 0.00 0.00 36.09 3.86
1357 1384 3.782046 ACGAACGACCATTCCTAATCTG 58.218 45.455 0.14 0.00 0.00 2.90
1362 1389 3.947910 AGAAACGAACGACCATTCCTA 57.052 42.857 0.14 0.00 0.00 2.94
1373 1400 1.285950 GGCCAGCCAAGAAACGAAC 59.714 57.895 3.12 0.00 35.81 3.95
1376 1403 1.978617 ATGGGCCAGCCAAGAAACG 60.979 57.895 13.78 0.00 37.98 3.60
1377 1404 0.899717 TCATGGGCCAGCCAAGAAAC 60.900 55.000 13.78 0.00 37.98 2.78
1381 1408 1.751927 GAGTCATGGGCCAGCCAAG 60.752 63.158 13.78 0.00 37.98 3.61
1395 1422 2.549754 CACACCAAGTTCCATGTGAGTC 59.450 50.000 5.18 0.00 44.20 3.36
1401 1428 0.961019 CCACCACACCAAGTTCCATG 59.039 55.000 0.00 0.00 0.00 3.66
1404 1431 2.351706 TAACCACCACACCAAGTTCC 57.648 50.000 0.00 0.00 0.00 3.62
1409 1436 4.708576 TCTACATTAACCACCACACCAA 57.291 40.909 0.00 0.00 0.00 3.67
1428 1455 2.356135 ACTATTCGCGGTGCAATTTCT 58.644 42.857 6.13 0.00 0.00 2.52
1433 1480 0.800012 GGAAACTATTCGCGGTGCAA 59.200 50.000 6.13 0.00 36.36 4.08
1481 1528 9.030301 CGTCTTCCAAACATTAACAAGAAAAAT 57.970 29.630 0.00 0.00 0.00 1.82
1483 1530 6.474102 GCGTCTTCCAAACATTAACAAGAAAA 59.526 34.615 0.00 0.00 0.00 2.29
1540 1622 1.043022 GCATAGCTGGAATTTGGGGG 58.957 55.000 0.00 0.00 0.00 5.40
1594 1676 0.990374 AGCCAATCAGCAGAGGAACT 59.010 50.000 0.00 0.00 36.69 3.01
1595 1677 1.065564 AGAGCCAATCAGCAGAGGAAC 60.066 52.381 0.00 0.00 34.23 3.62
1596 1678 1.283347 AGAGCCAATCAGCAGAGGAA 58.717 50.000 0.00 0.00 34.23 3.36
1597 1679 2.165357 TAGAGCCAATCAGCAGAGGA 57.835 50.000 0.00 0.00 34.23 3.71
1598 1680 2.996249 TTAGAGCCAATCAGCAGAGG 57.004 50.000 0.00 0.00 34.23 3.69
1625 1707 1.403514 GCCTCCTATCTAGCACGATGC 60.404 57.143 0.00 0.00 45.46 3.91
1632 1714 2.002505 TCAGTGGCCTCCTATCTAGC 57.997 55.000 3.32 0.00 0.00 3.42
1635 1717 1.419387 GCAATCAGTGGCCTCCTATCT 59.581 52.381 3.32 0.00 0.00 1.98
1637 1719 1.133976 GTGCAATCAGTGGCCTCCTAT 60.134 52.381 3.32 0.00 0.00 2.57
1694 1777 5.460646 ACAGATGACAAAATAACAAAGGCG 58.539 37.500 0.00 0.00 0.00 5.52
1727 1810 8.839310 AACAATATATTCAGCCTACTAGCAAG 57.161 34.615 0.00 0.00 34.23 4.01
1733 1816 7.050970 TCACGAACAATATATTCAGCCTACT 57.949 36.000 0.00 0.00 0.00 2.57
1740 1823 8.603181 CAGAACACATCACGAACAATATATTCA 58.397 33.333 0.00 0.00 0.00 2.57
1741 1824 8.604035 ACAGAACACATCACGAACAATATATTC 58.396 33.333 0.00 0.00 0.00 1.75
1742 1825 8.492673 ACAGAACACATCACGAACAATATATT 57.507 30.769 0.00 0.00 0.00 1.28
1743 1826 7.763985 TGACAGAACACATCACGAACAATATAT 59.236 33.333 0.00 0.00 0.00 0.86
1744 1827 7.062956 GTGACAGAACACATCACGAACAATATA 59.937 37.037 0.00 0.00 40.11 0.86
1745 1828 5.931724 TGACAGAACACATCACGAACAATAT 59.068 36.000 0.00 0.00 0.00 1.28
1746 1829 5.176774 GTGACAGAACACATCACGAACAATA 59.823 40.000 0.00 0.00 40.11 1.90
1772 1855 2.610479 GCTTCATGAACAGGTCGACAGA 60.610 50.000 18.91 0.00 0.00 3.41
1775 1858 1.795768 TGCTTCATGAACAGGTCGAC 58.204 50.000 7.13 7.13 0.00 4.20
1777 1860 4.944962 TTTATGCTTCATGAACAGGTCG 57.055 40.909 3.38 0.00 0.00 4.79
1821 1904 5.376854 AGTGTTTGGCAAGCACTTATTAG 57.623 39.130 34.72 0.00 40.13 1.73
1824 1907 5.476599 TCATTAGTGTTTGGCAAGCACTTAT 59.523 36.000 41.01 35.39 42.60 1.73
1826 1909 3.636300 TCATTAGTGTTTGGCAAGCACTT 59.364 39.130 41.01 27.86 42.60 3.16
1827 1910 3.221771 TCATTAGTGTTTGGCAAGCACT 58.778 40.909 38.93 38.93 44.49 4.40
1828 1911 3.641437 TCATTAGTGTTTGGCAAGCAC 57.359 42.857 31.87 31.87 0.00 4.40
1829 1912 4.081406 AGATCATTAGTGTTTGGCAAGCA 58.919 39.130 13.01 13.01 0.00 3.91
1830 1913 4.708726 AGATCATTAGTGTTTGGCAAGC 57.291 40.909 7.17 7.17 0.00 4.01
1831 1914 7.988737 TGATTAGATCATTAGTGTTTGGCAAG 58.011 34.615 0.00 0.00 33.59 4.01
1832 1915 7.936496 TGATTAGATCATTAGTGTTTGGCAA 57.064 32.000 0.00 0.00 33.59 4.52
1877 1960 1.280746 CAAGCTGTTGCAGACCGTG 59.719 57.895 0.00 0.00 42.74 4.94
2028 2112 3.274288 GTGGGAAGCTCTGGAAATAGTG 58.726 50.000 0.00 0.00 0.00 2.74
2030 2114 2.507471 AGGTGGGAAGCTCTGGAAATAG 59.493 50.000 0.00 0.00 0.00 1.73
2057 2150 7.254624 GCACTTGTTTAATGGTTTAACCCTTTG 60.255 37.037 12.02 3.04 37.50 2.77
2111 2204 1.866853 CGCCTTCTTTTGTCCCAGGC 61.867 60.000 0.00 0.00 45.73 4.85
2112 2205 0.250727 TCGCCTTCTTTTGTCCCAGG 60.251 55.000 0.00 0.00 0.00 4.45
2113 2206 1.160137 CTCGCCTTCTTTTGTCCCAG 58.840 55.000 0.00 0.00 0.00 4.45
2114 2207 0.250727 CCTCGCCTTCTTTTGTCCCA 60.251 55.000 0.00 0.00 0.00 4.37
2115 2208 0.036306 TCCTCGCCTTCTTTTGTCCC 59.964 55.000 0.00 0.00 0.00 4.46
2116 2209 2.115343 ATCCTCGCCTTCTTTTGTCC 57.885 50.000 0.00 0.00 0.00 4.02
2117 2210 4.695928 ACTTTATCCTCGCCTTCTTTTGTC 59.304 41.667 0.00 0.00 0.00 3.18
2118 2211 4.652822 ACTTTATCCTCGCCTTCTTTTGT 58.347 39.130 0.00 0.00 0.00 2.83
2183 2276 3.475566 TGAGTCCCACTATAGCAATGC 57.524 47.619 0.00 0.00 0.00 3.56
2201 2294 2.601240 TTTCCTGCCACCATGATTGA 57.399 45.000 0.00 0.00 0.00 2.57
2244 2337 3.345414 CTGCTTGCTCTGGAGAAAAGAT 58.655 45.455 13.79 0.00 0.00 2.40
2368 2461 2.295070 GGGTGTTCAGGTATTGCGTTTT 59.705 45.455 0.00 0.00 0.00 2.43
2377 2470 1.564818 TGGTTTGTGGGTGTTCAGGTA 59.435 47.619 0.00 0.00 0.00 3.08
2406 2499 1.739562 CTCTTCTGCCCGTGCTCAC 60.740 63.158 0.00 0.00 38.71 3.51
2416 2509 0.533755 AGTGTGGTGTGCTCTTCTGC 60.534 55.000 0.00 0.00 0.00 4.26
2511 2604 1.302511 GCTCTCTTCGTTGGGGCAA 60.303 57.895 0.00 0.00 0.00 4.52
2534 2627 0.609957 TGTCAAGCCTGGCTGGAATG 60.610 55.000 26.95 18.54 40.61 2.67
2541 2634 0.964358 ATGCTTCTGTCAAGCCTGGC 60.964 55.000 11.65 11.65 42.36 4.85
2621 2714 7.383687 AGAACATATCAAACTACTTGTTCGGA 58.616 34.615 7.67 0.00 44.62 4.55
2650 2743 2.039879 ACTCCCTTGTTAAGCGGACAAT 59.960 45.455 3.64 0.00 36.51 2.71
2651 2744 1.418637 ACTCCCTTGTTAAGCGGACAA 59.581 47.619 3.28 3.28 35.81 3.18
2654 2747 1.549170 GAGACTCCCTTGTTAAGCGGA 59.451 52.381 0.00 0.00 0.00 5.54
2655 2748 1.275291 TGAGACTCCCTTGTTAAGCGG 59.725 52.381 0.00 0.00 0.00 5.52
2656 2749 2.743636 TGAGACTCCCTTGTTAAGCG 57.256 50.000 0.00 0.00 0.00 4.68
2657 2750 5.966742 ATTTTGAGACTCCCTTGTTAAGC 57.033 39.130 0.00 0.00 0.00 3.09
2705 2877 6.656270 TGTAACATGCAAGAAAGATCATGAGT 59.344 34.615 0.09 0.00 38.77 3.41
2710 2882 7.112122 AGGTATGTAACATGCAAGAAAGATCA 58.888 34.615 0.00 0.00 0.00 2.92
2711 2883 7.559590 AGGTATGTAACATGCAAGAAAGATC 57.440 36.000 0.00 0.00 0.00 2.75
2767 2939 7.242359 TCCCCATAAGGTACAAATTTCAGAAA 58.758 34.615 0.00 0.00 0.00 2.52
2930 3102 2.949451 AGATCTGTTCTGTGCTACCG 57.051 50.000 0.00 0.00 31.79 4.02
3123 3296 7.466746 TCTTAAGGATGCTGCTATTTTTGTT 57.533 32.000 1.85 0.00 0.00 2.83
3135 3308 5.428184 AGTAGCTGTTTCTTAAGGATGCT 57.572 39.130 1.85 7.09 0.00 3.79
3208 3381 7.744715 CACGAGATCCAGTAACAATTAAACAAC 59.255 37.037 0.00 0.00 0.00 3.32
3231 3404 2.415168 ACTTATTTGCACGGATCACACG 59.585 45.455 0.00 0.00 37.36 4.49
3256 3429 9.981460 AATAATCTGAAGATTAGGAAACTGGTT 57.019 29.630 15.85 2.74 46.45 3.67
3424 3597 5.163163 CCAATTCACCTGATAGGAAGGATCA 60.163 44.000 1.13 0.00 37.67 2.92
3447 3620 2.033424 ACAAAGCAGAAAAGTCTTCGCC 59.967 45.455 0.00 0.00 28.78 5.54
3507 3681 2.365408 AGTTCTAAGCCACTACGCAC 57.635 50.000 0.00 0.00 0.00 5.34
3509 3683 5.107133 TGATTAAGTTCTAAGCCACTACGC 58.893 41.667 0.00 0.00 0.00 4.42
3510 3684 7.042658 GGAATGATTAAGTTCTAAGCCACTACG 60.043 40.741 0.00 0.00 0.00 3.51
3616 3790 4.281898 AGTACCTTTACTGTCCGCAAAT 57.718 40.909 0.00 0.00 37.15 2.32
3622 3796 5.448904 CGCTAGAGAAGTACCTTTACTGTCC 60.449 48.000 0.00 0.00 38.65 4.02
3637 3811 0.252103 AGTTGGGGTCCGCTAGAGAA 60.252 55.000 7.55 0.00 0.00 2.87
3638 3812 0.252103 AAGTTGGGGTCCGCTAGAGA 60.252 55.000 7.55 0.00 0.00 3.10
3639 3813 0.108138 CAAGTTGGGGTCCGCTAGAG 60.108 60.000 7.55 0.00 0.00 2.43
3640 3814 0.834687 ACAAGTTGGGGTCCGCTAGA 60.835 55.000 7.96 0.00 0.00 2.43
3641 3815 0.036306 AACAAGTTGGGGTCCGCTAG 59.964 55.000 7.96 0.00 0.00 3.42
3642 3816 0.475044 AAACAAGTTGGGGTCCGCTA 59.525 50.000 7.96 0.00 0.00 4.26
3643 3817 1.106944 CAAACAAGTTGGGGTCCGCT 61.107 55.000 7.96 0.00 33.18 5.52
3654 3828 0.469892 CCCTTCAGCCCCAAACAAGT 60.470 55.000 0.00 0.00 0.00 3.16
3655 3829 1.820010 GCCCTTCAGCCCCAAACAAG 61.820 60.000 0.00 0.00 0.00 3.16
3656 3830 1.836604 GCCCTTCAGCCCCAAACAA 60.837 57.895 0.00 0.00 0.00 2.83
3657 3831 2.203625 GCCCTTCAGCCCCAAACA 60.204 61.111 0.00 0.00 0.00 2.83
3658 3832 1.121407 AAAGCCCTTCAGCCCCAAAC 61.121 55.000 0.00 0.00 0.00 2.93
3659 3833 1.120795 CAAAGCCCTTCAGCCCCAAA 61.121 55.000 0.00 0.00 0.00 3.28
3660 3834 1.533753 CAAAGCCCTTCAGCCCCAA 60.534 57.895 0.00 0.00 0.00 4.12
3661 3835 2.118076 CAAAGCCCTTCAGCCCCA 59.882 61.111 0.00 0.00 0.00 4.96
3662 3836 0.251608 TAACAAAGCCCTTCAGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
3665 3839 3.942130 ACAATAACAAAGCCCTTCAGC 57.058 42.857 0.00 0.00 0.00 4.26
3666 3840 5.200368 ACAACAATAACAAAGCCCTTCAG 57.800 39.130 0.00 0.00 0.00 3.02
3667 3841 5.105146 ACAACAACAATAACAAAGCCCTTCA 60.105 36.000 0.00 0.00 0.00 3.02
3668 3842 5.356426 ACAACAACAATAACAAAGCCCTTC 58.644 37.500 0.00 0.00 0.00 3.46
3669 3843 5.351948 ACAACAACAATAACAAAGCCCTT 57.648 34.783 0.00 0.00 0.00 3.95
3670 3844 5.351948 AACAACAACAATAACAAAGCCCT 57.648 34.783 0.00 0.00 0.00 5.19
3671 3845 7.722795 ATTAACAACAACAATAACAAAGCCC 57.277 32.000 0.00 0.00 0.00 5.19
3672 3846 8.821894 TCAATTAACAACAACAATAACAAAGCC 58.178 29.630 0.00 0.00 0.00 4.35
3680 3854 9.619316 CGAGGAAATCAATTAACAACAACAATA 57.381 29.630 0.00 0.00 0.00 1.90
3682 3856 7.484975 ACGAGGAAATCAATTAACAACAACAA 58.515 30.769 0.00 0.00 0.00 2.83
3683 3857 7.033530 ACGAGGAAATCAATTAACAACAACA 57.966 32.000 0.00 0.00 0.00 3.33
3684 3858 9.620660 ATTACGAGGAAATCAATTAACAACAAC 57.379 29.630 0.00 0.00 0.00 3.32
3724 3942 1.349627 CAGAACGCATCGATGTGCC 59.650 57.895 33.04 25.23 42.06 5.01
3727 3945 1.129251 CAAAGCAGAACGCATCGATGT 59.871 47.619 25.47 7.00 46.13 3.06
3732 3950 0.593128 ACCACAAAGCAGAACGCATC 59.407 50.000 0.00 0.00 46.13 3.91
3735 3953 0.110192 GCTACCACAAAGCAGAACGC 60.110 55.000 0.00 0.00 39.83 4.84
3737 3955 0.517316 CCGCTACCACAAAGCAGAAC 59.483 55.000 0.00 0.00 40.08 3.01
3738 3956 0.605319 CCCGCTACCACAAAGCAGAA 60.605 55.000 0.00 0.00 40.08 3.02
3740 3958 2.040544 CCCCGCTACCACAAAGCAG 61.041 63.158 0.00 0.00 40.08 4.24
3742 3960 0.891904 TTTCCCCGCTACCACAAAGC 60.892 55.000 0.00 0.00 36.60 3.51
3743 3961 1.611519 TTTTCCCCGCTACCACAAAG 58.388 50.000 0.00 0.00 0.00 2.77
3744 3962 2.068834 TTTTTCCCCGCTACCACAAA 57.931 45.000 0.00 0.00 0.00 2.83
3747 3965 0.815095 CCATTTTTCCCCGCTACCAC 59.185 55.000 0.00 0.00 0.00 4.16
3748 3966 0.699399 TCCATTTTTCCCCGCTACCA 59.301 50.000 0.00 0.00 0.00 3.25
3759 3983 4.295051 CAACGAACGGAACATCCATTTTT 58.705 39.130 0.00 0.00 35.91 1.94
3763 3987 0.802494 GCAACGAACGGAACATCCAT 59.198 50.000 0.00 0.00 35.91 3.41
3837 4061 3.420893 TCAAGGACCACCAACAATGATC 58.579 45.455 0.00 0.00 38.94 2.92
3847 4071 2.305927 TCAGAAGGAATCAAGGACCACC 59.694 50.000 0.00 0.00 0.00 4.61
4010 4246 2.031616 TGCACTGGAGCAGACTGC 59.968 61.111 20.12 20.12 45.46 4.40
4039 4275 0.177604 ATACACAGCTCAGCTCCTGC 59.822 55.000 0.00 0.52 36.40 4.85
4064 4300 2.278206 CATCGGCCACTCGAGTCG 60.278 66.667 16.96 16.71 42.69 4.18
4103 4346 2.681778 AGGACCTGAGAGCCGGTG 60.682 66.667 1.90 0.00 32.62 4.94
4114 4357 2.621070 ACATACAGACCAACAGGACCT 58.379 47.619 0.00 0.00 0.00 3.85
4115 4358 4.020485 AGTTACATACAGACCAACAGGACC 60.020 45.833 0.00 0.00 0.00 4.46
4191 4446 7.780008 TGACTTCCACGGTATAATAATGTTG 57.220 36.000 0.00 0.00 0.00 3.33
4224 4482 3.691609 GGACATGTTGATTGGAGGAAGAC 59.308 47.826 0.00 0.00 0.00 3.01
4228 4486 2.025981 CCTGGACATGTTGATTGGAGGA 60.026 50.000 0.00 0.00 0.00 3.71
4229 4487 2.291153 ACCTGGACATGTTGATTGGAGG 60.291 50.000 0.00 0.86 0.00 4.30
4230 4488 3.012518 GACCTGGACATGTTGATTGGAG 58.987 50.000 0.00 0.00 0.00 3.86
4290 4548 1.963172 AACAGTCCAGAAAACCGACC 58.037 50.000 0.00 0.00 0.00 4.79
4297 4555 6.018262 CGTTAATGACAGAAACAGTCCAGAAA 60.018 38.462 0.00 0.00 35.15 2.52
4299 4557 4.988540 CGTTAATGACAGAAACAGTCCAGA 59.011 41.667 0.00 0.00 35.15 3.86
4300 4558 4.750098 ACGTTAATGACAGAAACAGTCCAG 59.250 41.667 0.58 0.00 35.15 3.86
4301 4559 4.509970 CACGTTAATGACAGAAACAGTCCA 59.490 41.667 0.58 0.00 35.15 4.02
4303 4561 5.233476 TCACACGTTAATGACAGAAACAGTC 59.767 40.000 0.58 0.00 36.55 3.51
4304 4562 5.113383 TCACACGTTAATGACAGAAACAGT 58.887 37.500 0.58 0.00 0.00 3.55
4305 4563 5.462068 TCTCACACGTTAATGACAGAAACAG 59.538 40.000 0.58 0.00 0.00 3.16
4306 4564 5.353111 TCTCACACGTTAATGACAGAAACA 58.647 37.500 0.58 0.00 0.00 2.83
4307 4565 5.900339 TCTCACACGTTAATGACAGAAAC 57.100 39.130 0.58 0.00 0.00 2.78
4309 4567 7.490962 AAAATCTCACACGTTAATGACAGAA 57.509 32.000 0.58 0.00 0.00 3.02
4311 4569 6.516355 CGAAAAATCTCACACGTTAATGACAG 59.484 38.462 0.58 0.00 0.00 3.51
4317 4575 4.508492 TGCTCGAAAAATCTCACACGTTAA 59.492 37.500 0.00 0.00 0.00 2.01
4345 4603 6.440647 AGACGACCCCATATACATTCATACAT 59.559 38.462 0.00 0.00 0.00 2.29
4352 4619 3.005472 CACGAGACGACCCCATATACATT 59.995 47.826 0.00 0.00 0.00 2.71
4356 4623 2.353357 ACACGAGACGACCCCATATA 57.647 50.000 0.00 0.00 0.00 0.86
4364 4631 1.352156 GATGGCCAACACGAGACGAC 61.352 60.000 10.96 0.00 0.00 4.34
4372 4644 1.406539 GTGGATGATGATGGCCAACAC 59.593 52.381 19.07 12.50 30.09 3.32
4559 4831 2.225068 AACGGATAGCCACAAGATCG 57.775 50.000 0.00 0.00 0.00 3.69
4585 4857 2.178890 CAGAAGATCGCTGCAGGGC 61.179 63.158 25.01 12.63 0.00 5.19
4586 4858 4.121691 CAGAAGATCGCTGCAGGG 57.878 61.111 23.98 23.98 0.00 4.45
4604 4876 2.126307 AGAGCACGTGTAGCGCAG 60.126 61.111 18.38 0.00 46.11 5.18
4618 4890 1.298157 TGGAATCGGTTTGCGCAGAG 61.298 55.000 11.31 3.53 0.00 3.35
4619 4891 1.298157 CTGGAATCGGTTTGCGCAGA 61.298 55.000 11.31 2.14 0.00 4.26
4622 4894 0.454452 GTTCTGGAATCGGTTTGCGC 60.454 55.000 0.00 0.00 0.00 6.09
4627 4899 0.320073 TTCGCGTTCTGGAATCGGTT 60.320 50.000 5.77 0.00 0.00 4.44
4629 4901 1.787155 CTATTCGCGTTCTGGAATCGG 59.213 52.381 5.77 0.00 34.82 4.18
4632 4904 2.093658 ACCACTATTCGCGTTCTGGAAT 60.094 45.455 5.77 0.00 36.82 3.01
4641 4913 1.756375 GCTCTGCACCACTATTCGCG 61.756 60.000 0.00 0.00 0.00 5.87
4652 4924 2.288702 ACGGATCATATCTGCTCTGCAC 60.289 50.000 0.00 0.00 39.30 4.57
4655 4927 2.298446 ACCACGGATCATATCTGCTCTG 59.702 50.000 0.00 0.00 39.30 3.35
4658 4930 2.700371 TCAACCACGGATCATATCTGCT 59.300 45.455 0.00 0.00 39.30 4.24
4659 4931 3.111853 TCAACCACGGATCATATCTGC 57.888 47.619 0.00 0.00 39.30 4.26
4660 4932 4.083643 GCAATCAACCACGGATCATATCTG 60.084 45.833 0.00 0.00 41.49 2.90
4661 4933 4.067896 GCAATCAACCACGGATCATATCT 58.932 43.478 0.00 0.00 0.00 1.98
4691 4963 2.500229 TGAAGGTTGATTGGTCGGAAC 58.500 47.619 0.00 0.00 0.00 3.62
4692 4964 2.882137 GTTGAAGGTTGATTGGTCGGAA 59.118 45.455 0.00 0.00 0.00 4.30
4693 4965 2.500229 GTTGAAGGTTGATTGGTCGGA 58.500 47.619 0.00 0.00 0.00 4.55
4694 4966 1.539827 GGTTGAAGGTTGATTGGTCGG 59.460 52.381 0.00 0.00 0.00 4.79
4695 4967 1.539827 GGGTTGAAGGTTGATTGGTCG 59.460 52.381 0.00 0.00 0.00 4.79
4696 4968 2.296190 GTGGGTTGAAGGTTGATTGGTC 59.704 50.000 0.00 0.00 0.00 4.02
4697 4969 2.091333 AGTGGGTTGAAGGTTGATTGGT 60.091 45.455 0.00 0.00 0.00 3.67
4698 4970 2.297033 CAGTGGGTTGAAGGTTGATTGG 59.703 50.000 0.00 0.00 0.00 3.16
4699 4971 2.297033 CCAGTGGGTTGAAGGTTGATTG 59.703 50.000 0.00 0.00 0.00 2.67
4700 4972 2.176798 TCCAGTGGGTTGAAGGTTGATT 59.823 45.455 9.92 0.00 34.93 2.57
4701 4973 1.780309 TCCAGTGGGTTGAAGGTTGAT 59.220 47.619 9.92 0.00 34.93 2.57
4705 4977 4.463050 TTTATTCCAGTGGGTTGAAGGT 57.537 40.909 9.92 0.00 34.93 3.50
4709 4981 5.250543 TCTCTCATTTATTCCAGTGGGTTGA 59.749 40.000 9.92 3.31 34.93 3.18
4715 4987 5.668471 TGAGCTCTCTCATTTATTCCAGTG 58.332 41.667 16.19 0.00 43.95 3.66
4729 5001 5.690464 AGGAAAATGTATGTGAGCTCTCT 57.310 39.130 16.19 4.33 0.00 3.10
4732 5004 5.528690 TGCATAGGAAAATGTATGTGAGCTC 59.471 40.000 6.82 6.82 0.00 4.09
4733 5005 5.297776 GTGCATAGGAAAATGTATGTGAGCT 59.702 40.000 0.00 0.00 0.00 4.09
4735 5007 6.722301 CAGTGCATAGGAAAATGTATGTGAG 58.278 40.000 0.00 0.00 0.00 3.51
4736 5008 5.066375 GCAGTGCATAGGAAAATGTATGTGA 59.934 40.000 11.09 0.00 0.00 3.58
4737 5009 5.276270 GCAGTGCATAGGAAAATGTATGTG 58.724 41.667 11.09 0.00 0.00 3.21
4738 5010 4.339247 GGCAGTGCATAGGAAAATGTATGT 59.661 41.667 18.61 0.00 0.00 2.29
4739 5011 4.555313 CGGCAGTGCATAGGAAAATGTATG 60.555 45.833 18.61 0.00 0.00 2.39
4740 5012 3.565482 CGGCAGTGCATAGGAAAATGTAT 59.435 43.478 18.61 0.00 0.00 2.29
4741 5013 2.942376 CGGCAGTGCATAGGAAAATGTA 59.058 45.455 18.61 0.00 0.00 2.29
4742 5014 1.745087 CGGCAGTGCATAGGAAAATGT 59.255 47.619 18.61 0.00 0.00 2.71
4743 5015 1.745087 ACGGCAGTGCATAGGAAAATG 59.255 47.619 18.61 0.00 0.00 2.32
4744 5016 2.017049 GACGGCAGTGCATAGGAAAAT 58.983 47.619 18.61 0.00 0.00 1.82
4749 5021 4.115279 CTGACGGCAGTGCATAGG 57.885 61.111 18.61 5.32 37.37 2.57
4817 5093 2.588877 GGCGCACACTGTGTCTGT 60.589 61.111 11.12 0.00 35.75 3.41
4818 5094 3.349006 GGGCGCACACTGTGTCTG 61.349 66.667 11.12 7.49 35.75 3.51
4819 5095 3.521529 GAGGGCGCACACTGTGTCT 62.522 63.158 14.57 4.56 35.75 3.41
4820 5096 3.044305 GAGGGCGCACACTGTGTC 61.044 66.667 14.57 5.48 35.75 3.67
4821 5097 4.626081 GGAGGGCGCACACTGTGT 62.626 66.667 14.57 7.80 35.75 3.72
4822 5098 4.624364 TGGAGGGCGCACACTGTG 62.624 66.667 14.57 6.19 36.51 3.66
4844 5122 3.615937 CAGCTGCGTGATATGATATCACC 59.384 47.826 29.74 23.86 43.98 4.02
4939 5217 1.382522 AAGGGCGTGTGATGCTAATG 58.617 50.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.