Multiple sequence alignment - TraesCS1A01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G302000 chr1A 100.000 5741 0 0 1 5741 496076116 496070376 0.000000e+00 10602.0
1 TraesCS1A01G302000 chr1D 91.922 4085 214 55 845 4850 399239715 399235668 0.000000e+00 5609.0
2 TraesCS1A01G302000 chr1D 94.245 278 11 3 4872 5148 399235577 399235304 2.470000e-113 420.0
3 TraesCS1A01G302000 chr1D 85.294 442 20 19 5258 5676 399235288 399234869 1.150000e-111 414.0
4 TraesCS1A01G302000 chr1D 91.034 145 1 6 519 657 399240315 399240177 9.820000e-43 185.0
5 TraesCS1A01G302000 chr1B 93.867 3310 151 19 1581 4850 535549313 535546016 0.000000e+00 4940.0
6 TraesCS1A01G302000 chr1B 83.832 903 74 34 519 1379 535550349 535549477 0.000000e+00 793.0
7 TraesCS1A01G302000 chr1B 83.829 538 37 25 5163 5674 535545640 535545127 3.130000e-127 466.0
8 TraesCS1A01G302000 chr1B 91.852 135 5 4 1388 1520 535549432 535549302 3.530000e-42 183.0
9 TraesCS1A01G302000 chr1B 78.992 238 16 15 4872 5109 535545925 535545722 1.300000e-26 132.0
10 TraesCS1A01G302000 chr3A 90.667 75 7 0 1754 1828 655539764 655539838 3.660000e-17 100.0
11 TraesCS1A01G302000 chr4D 90.278 72 7 0 1758 1829 91094266 91094195 1.700000e-15 95.3
12 TraesCS1A01G302000 chr4A 90.278 72 7 0 1758 1829 503327100 503327029 1.700000e-15 95.3
13 TraesCS1A01G302000 chr7D 86.567 67 8 1 1764 1830 616038848 616038913 7.980000e-09 73.1
14 TraesCS1A01G302000 chr7D 90.909 44 4 0 1767 1810 442689056 442689099 6.210000e-05 60.2
15 TraesCS1A01G302000 chr7B 85.938 64 7 2 1748 1810 460106743 460106805 3.710000e-07 67.6
16 TraesCS1A01G302000 chr7B 90.909 44 4 0 1767 1810 460252968 460253011 6.210000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G302000 chr1A 496070376 496076116 5740 True 10602.0 10602 100.00000 1 5741 1 chr1A.!!$R1 5740
1 TraesCS1A01G302000 chr1D 399234869 399240315 5446 True 1657.0 5609 90.62375 519 5676 4 chr1D.!!$R1 5157
2 TraesCS1A01G302000 chr1B 535545127 535550349 5222 True 1302.8 4940 86.47440 519 5674 5 chr1B.!!$R1 5155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.035056 AAAGCCATCCAGGTTCTCCG 60.035 55.000 0.00 0.00 40.61 4.63 F
1361 1705 0.036952 TCTGCTTCACTAGTGGCTGC 60.037 55.000 22.48 21.36 0.00 5.25 F
1915 2310 1.276421 GCACTCCTCAGGCTTCTTACA 59.724 52.381 0.00 0.00 0.00 2.41 F
3251 3646 1.302511 CGTCCAAGTTCCCCAGGTG 60.303 63.158 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 2288 0.990374 AAGAAGCCTGAGGAGTGCAT 59.010 50.000 0.65 0.00 0.00 3.96 R
2839 3234 2.564771 CGGCTCATTGCAGGAATAGAA 58.435 47.619 0.00 0.00 45.15 2.10 R
3608 4003 0.307760 GCTTGACTGTCAACAACGGG 59.692 55.000 18.69 9.56 38.70 5.28 R
4796 5224 0.036671 ACGAAGGAACGTGGGGAATC 60.037 55.000 0.00 0.00 44.84 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 8.843885 ATATGATGAATTAGTGGATGTGTCAG 57.156 34.615 0.00 0.00 0.00 3.51
66 67 6.298441 TGATGAATTAGTGGATGTGTCAGA 57.702 37.500 0.00 0.00 0.00 3.27
67 68 6.710278 TGATGAATTAGTGGATGTGTCAGAA 58.290 36.000 0.00 0.00 0.00 3.02
68 69 7.167535 TGATGAATTAGTGGATGTGTCAGAAA 58.832 34.615 0.00 0.00 0.00 2.52
69 70 7.830697 TGATGAATTAGTGGATGTGTCAGAAAT 59.169 33.333 0.00 0.00 0.00 2.17
70 71 9.330063 GATGAATTAGTGGATGTGTCAGAAATA 57.670 33.333 0.00 0.00 0.00 1.40
71 72 8.492673 TGAATTAGTGGATGTGTCAGAAATAC 57.507 34.615 0.00 0.00 0.00 1.89
72 73 8.100164 TGAATTAGTGGATGTGTCAGAAATACA 58.900 33.333 0.00 0.00 33.12 2.29
73 74 9.113838 GAATTAGTGGATGTGTCAGAAATACAT 57.886 33.333 0.00 0.00 41.87 2.29
74 75 7.848223 TTAGTGGATGTGTCAGAAATACATG 57.152 36.000 0.00 0.00 39.55 3.21
75 76 6.053632 AGTGGATGTGTCAGAAATACATGA 57.946 37.500 0.00 0.00 39.55 3.07
76 77 6.656902 AGTGGATGTGTCAGAAATACATGAT 58.343 36.000 0.00 0.00 39.55 2.45
77 78 7.114754 AGTGGATGTGTCAGAAATACATGATT 58.885 34.615 0.00 0.00 39.55 2.57
78 79 7.613022 AGTGGATGTGTCAGAAATACATGATTT 59.387 33.333 0.00 1.08 39.55 2.17
79 80 8.246180 GTGGATGTGTCAGAAATACATGATTTT 58.754 33.333 0.00 0.00 39.55 1.82
80 81 8.805175 TGGATGTGTCAGAAATACATGATTTTT 58.195 29.630 0.00 0.00 39.55 1.94
104 105 3.404564 GCGTGTAGCTCACATTAAAACG 58.595 45.455 14.09 3.51 46.44 3.60
105 106 3.120786 GCGTGTAGCTCACATTAAAACGT 60.121 43.478 14.09 0.00 46.44 3.99
106 107 4.090354 GCGTGTAGCTCACATTAAAACGTA 59.910 41.667 14.09 0.00 46.44 3.57
107 108 5.220340 GCGTGTAGCTCACATTAAAACGTAT 60.220 40.000 14.09 0.00 46.44 3.06
108 109 6.671402 GCGTGTAGCTCACATTAAAACGTATT 60.671 38.462 14.09 0.00 46.44 1.89
109 110 7.231607 CGTGTAGCTCACATTAAAACGTATTT 58.768 34.615 14.09 0.00 46.44 1.40
110 111 7.421613 CGTGTAGCTCACATTAAAACGTATTTC 59.578 37.037 14.09 0.00 46.44 2.17
111 112 8.225107 GTGTAGCTCACATTAAAACGTATTTCA 58.775 33.333 10.30 0.00 45.51 2.69
112 113 8.941977 TGTAGCTCACATTAAAACGTATTTCAT 58.058 29.630 0.00 0.00 30.04 2.57
113 114 9.769093 GTAGCTCACATTAAAACGTATTTCATT 57.231 29.630 0.00 0.00 0.00 2.57
187 188 9.737427 TTTAGAACATAAAAAGCGTGAATTTCA 57.263 25.926 0.00 0.00 0.00 2.69
188 189 9.737427 TTAGAACATAAAAAGCGTGAATTTCAA 57.263 25.926 0.00 0.00 0.00 2.69
189 190 8.816640 AGAACATAAAAAGCGTGAATTTCAAT 57.183 26.923 0.00 0.00 0.00 2.57
190 191 9.260002 AGAACATAAAAAGCGTGAATTTCAATT 57.740 25.926 0.00 0.00 0.00 2.32
195 196 9.971744 ATAAAAAGCGTGAATTTCAATTATTGC 57.028 25.926 0.00 0.00 0.00 3.56
196 197 7.418840 AAAAGCGTGAATTTCAATTATTGCA 57.581 28.000 0.00 0.00 0.00 4.08
197 198 7.599630 AAAGCGTGAATTTCAATTATTGCAT 57.400 28.000 0.00 0.00 0.00 3.96
198 199 7.599630 AAGCGTGAATTTCAATTATTGCATT 57.400 28.000 0.00 1.48 0.00 3.56
199 200 8.700722 AAGCGTGAATTTCAATTATTGCATTA 57.299 26.923 0.00 0.00 0.00 1.90
200 201 8.876275 AGCGTGAATTTCAATTATTGCATTAT 57.124 26.923 0.00 0.00 0.00 1.28
201 202 9.316730 AGCGTGAATTTCAATTATTGCATTATT 57.683 25.926 0.00 0.00 0.00 1.40
202 203 9.919348 GCGTGAATTTCAATTATTGCATTATTT 57.081 25.926 0.00 0.00 0.00 1.40
217 218 7.693969 TGCATTATTTTAAAAATTGGGTGGG 57.306 32.000 4.44 0.00 0.00 4.61
218 219 6.151817 TGCATTATTTTAAAAATTGGGTGGGC 59.848 34.615 4.44 1.22 0.00 5.36
219 220 6.676700 GCATTATTTTAAAAATTGGGTGGGCG 60.677 38.462 4.44 0.00 0.00 6.13
220 221 2.841442 TTTAAAAATTGGGTGGGCGG 57.159 45.000 0.00 0.00 0.00 6.13
221 222 0.321996 TTAAAAATTGGGTGGGCGGC 59.678 50.000 0.00 0.00 0.00 6.53
222 223 0.832135 TAAAAATTGGGTGGGCGGCA 60.832 50.000 12.47 0.00 0.00 5.69
223 224 1.487850 AAAAATTGGGTGGGCGGCAT 61.488 50.000 12.47 0.00 0.00 4.40
224 225 1.487850 AAAATTGGGTGGGCGGCATT 61.488 50.000 12.47 0.00 0.00 3.56
225 226 0.616111 AAATTGGGTGGGCGGCATTA 60.616 50.000 12.47 0.00 0.00 1.90
226 227 1.042559 AATTGGGTGGGCGGCATTAG 61.043 55.000 12.47 0.00 0.00 1.73
227 228 4.813235 TGGGTGGGCGGCATTAGC 62.813 66.667 12.47 6.03 41.10 3.09
228 229 4.813235 GGGTGGGCGGCATTAGCA 62.813 66.667 12.47 0.00 44.61 3.49
229 230 2.753849 GGTGGGCGGCATTAGCAA 60.754 61.111 12.47 0.00 44.61 3.91
230 231 2.127232 GGTGGGCGGCATTAGCAAT 61.127 57.895 12.47 0.00 44.61 3.56
231 232 1.675720 GGTGGGCGGCATTAGCAATT 61.676 55.000 12.47 0.00 44.61 2.32
232 233 0.249031 GTGGGCGGCATTAGCAATTC 60.249 55.000 12.47 0.00 44.61 2.17
233 234 1.363807 GGGCGGCATTAGCAATTCC 59.636 57.895 12.47 0.00 44.61 3.01
235 236 4.614673 CGGCATTAGCAATTCCGC 57.385 55.556 6.92 0.00 40.54 5.54
236 237 2.024918 CGGCATTAGCAATTCCGCT 58.975 52.632 6.92 0.00 40.54 5.52
237 238 1.225855 CGGCATTAGCAATTCCGCTA 58.774 50.000 6.92 0.00 40.54 4.26
238 239 1.806542 CGGCATTAGCAATTCCGCTAT 59.193 47.619 6.92 0.00 43.77 2.97
239 240 2.159653 CGGCATTAGCAATTCCGCTATC 60.160 50.000 6.92 0.00 43.77 2.08
240 241 2.159653 GGCATTAGCAATTCCGCTATCG 60.160 50.000 0.00 0.00 43.77 2.92
241 242 2.726066 GCATTAGCAATTCCGCTATCGC 60.726 50.000 0.00 2.03 43.77 4.58
242 243 2.232756 TTAGCAATTCCGCTATCGCA 57.767 45.000 0.00 0.00 43.77 5.10
243 244 1.497991 TAGCAATTCCGCTATCGCAC 58.502 50.000 0.00 0.00 43.56 5.34
244 245 0.461870 AGCAATTCCGCTATCGCACA 60.462 50.000 0.00 0.00 41.55 4.57
245 246 0.041839 GCAATTCCGCTATCGCACAG 60.042 55.000 0.00 0.00 35.30 3.66
246 247 0.583438 CAATTCCGCTATCGCACAGG 59.417 55.000 0.00 0.00 35.30 4.00
247 248 0.178068 AATTCCGCTATCGCACAGGT 59.822 50.000 0.00 0.00 35.30 4.00
248 249 0.178068 ATTCCGCTATCGCACAGGTT 59.822 50.000 0.00 0.00 35.30 3.50
249 250 0.036765 TTCCGCTATCGCACAGGTTT 60.037 50.000 0.00 0.00 35.30 3.27
250 251 0.036765 TCCGCTATCGCACAGGTTTT 60.037 50.000 0.00 0.00 35.30 2.43
251 252 1.205179 TCCGCTATCGCACAGGTTTTA 59.795 47.619 0.00 0.00 35.30 1.52
252 253 1.326548 CCGCTATCGCACAGGTTTTAC 59.673 52.381 0.00 0.00 35.30 2.01
253 254 2.268298 CGCTATCGCACAGGTTTTACT 58.732 47.619 0.00 0.00 35.30 2.24
254 255 2.671396 CGCTATCGCACAGGTTTTACTT 59.329 45.455 0.00 0.00 35.30 2.24
255 256 3.861113 CGCTATCGCACAGGTTTTACTTA 59.139 43.478 0.00 0.00 35.30 2.24
256 257 4.259690 CGCTATCGCACAGGTTTTACTTAC 60.260 45.833 0.00 0.00 35.30 2.34
257 258 4.259690 GCTATCGCACAGGTTTTACTTACG 60.260 45.833 0.00 0.00 35.78 3.18
258 259 2.406130 TCGCACAGGTTTTACTTACGG 58.594 47.619 0.00 0.00 0.00 4.02
259 260 2.035704 TCGCACAGGTTTTACTTACGGA 59.964 45.455 0.00 0.00 0.00 4.69
260 261 2.801679 CGCACAGGTTTTACTTACGGAA 59.198 45.455 0.00 0.00 0.00 4.30
261 262 3.248125 CGCACAGGTTTTACTTACGGAAA 59.752 43.478 0.00 0.00 0.00 3.13
262 263 4.083696 CGCACAGGTTTTACTTACGGAAAT 60.084 41.667 0.00 0.00 0.00 2.17
263 264 5.120519 CGCACAGGTTTTACTTACGGAAATA 59.879 40.000 0.00 0.00 0.00 1.40
264 265 6.540205 GCACAGGTTTTACTTACGGAAATAG 58.460 40.000 0.00 0.00 0.00 1.73
265 266 6.148315 GCACAGGTTTTACTTACGGAAATAGT 59.852 38.462 0.00 0.00 0.00 2.12
266 267 7.331687 GCACAGGTTTTACTTACGGAAATAGTA 59.668 37.037 0.00 0.00 0.00 1.82
267 268 9.206870 CACAGGTTTTACTTACGGAAATAGTAA 57.793 33.333 0.00 0.00 33.75 2.24
268 269 9.948964 ACAGGTTTTACTTACGGAAATAGTAAT 57.051 29.630 0.00 0.00 35.12 1.89
270 271 9.387257 AGGTTTTACTTACGGAAATAGTAATGG 57.613 33.333 0.00 0.00 35.12 3.16
271 272 8.615211 GGTTTTACTTACGGAAATAGTAATGGG 58.385 37.037 0.00 0.00 35.12 4.00
272 273 7.790823 TTTACTTACGGAAATAGTAATGGGC 57.209 36.000 0.00 0.00 35.12 5.36
273 274 4.374399 ACTTACGGAAATAGTAATGGGCG 58.626 43.478 0.00 0.00 34.10 6.13
274 275 4.099881 ACTTACGGAAATAGTAATGGGCGA 59.900 41.667 0.00 0.00 34.10 5.54
275 276 3.547054 ACGGAAATAGTAATGGGCGAA 57.453 42.857 0.00 0.00 0.00 4.70
276 277 3.200483 ACGGAAATAGTAATGGGCGAAC 58.800 45.455 0.00 0.00 0.00 3.95
277 278 3.199677 CGGAAATAGTAATGGGCGAACA 58.800 45.455 0.00 0.00 0.00 3.18
278 279 3.813166 CGGAAATAGTAATGGGCGAACAT 59.187 43.478 0.00 0.00 0.00 2.71
279 280 4.274950 CGGAAATAGTAATGGGCGAACATT 59.725 41.667 9.47 9.47 43.13 2.71
280 281 5.560183 CGGAAATAGTAATGGGCGAACATTC 60.560 44.000 8.07 2.49 41.12 2.67
290 291 3.525619 CGAACATTCGTCAAGGGGA 57.474 52.632 5.85 0.00 45.09 4.81
291 292 1.803334 CGAACATTCGTCAAGGGGAA 58.197 50.000 5.85 0.00 45.09 3.97
292 293 2.147958 CGAACATTCGTCAAGGGGAAA 58.852 47.619 5.85 0.00 45.09 3.13
293 294 2.095919 CGAACATTCGTCAAGGGGAAAC 60.096 50.000 5.85 0.00 45.09 2.78
294 295 2.951229 ACATTCGTCAAGGGGAAACT 57.049 45.000 0.00 0.00 0.00 2.66
295 296 2.504367 ACATTCGTCAAGGGGAAACTG 58.496 47.619 0.00 0.00 0.00 3.16
296 297 1.200020 CATTCGTCAAGGGGAAACTGC 59.800 52.381 0.00 0.00 0.00 4.40
297 298 0.536460 TTCGTCAAGGGGAAACTGCC 60.536 55.000 0.00 0.00 0.00 4.85
298 299 1.228124 CGTCAAGGGGAAACTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
299 300 1.237285 CGTCAAGGGGAAACTGCCAG 61.237 60.000 0.00 0.00 0.00 4.85
300 301 1.228552 TCAAGGGGAAACTGCCAGC 60.229 57.895 0.00 0.00 0.00 4.85
301 302 2.282462 AAGGGGAAACTGCCAGCG 60.282 61.111 0.00 0.00 0.00 5.18
302 303 2.829384 AAGGGGAAACTGCCAGCGA 61.829 57.895 0.00 0.00 0.00 4.93
303 304 2.282180 GGGGAAACTGCCAGCGAA 60.282 61.111 0.00 0.00 0.00 4.70
304 305 2.626780 GGGGAAACTGCCAGCGAAC 61.627 63.158 0.00 0.00 0.00 3.95
305 306 1.896660 GGGAAACTGCCAGCGAACA 60.897 57.895 0.00 0.00 0.00 3.18
306 307 1.282875 GGAAACTGCCAGCGAACAC 59.717 57.895 0.00 0.00 0.00 3.32
307 308 1.082756 GAAACTGCCAGCGAACACG 60.083 57.895 0.00 0.00 0.00 4.49
316 317 3.165498 GCGAACACGCCCTAGTTG 58.835 61.111 3.16 0.00 45.62 3.16
317 318 3.023591 GCGAACACGCCCTAGTTGC 62.024 63.158 3.16 0.00 45.62 4.17
318 319 2.388232 CGAACACGCCCTAGTTGCC 61.388 63.158 0.00 0.00 0.00 4.52
319 320 1.302192 GAACACGCCCTAGTTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
320 321 1.574702 GAACACGCCCTAGTTGCCAC 61.575 60.000 0.00 0.00 0.00 5.01
321 322 2.031919 CACGCCCTAGTTGCCACA 59.968 61.111 0.00 0.00 0.00 4.17
322 323 2.032071 ACGCCCTAGTTGCCACAC 59.968 61.111 0.00 0.00 0.00 3.82
323 324 3.118454 CGCCCTAGTTGCCACACG 61.118 66.667 0.00 0.00 0.00 4.49
324 325 2.345991 GCCCTAGTTGCCACACGA 59.654 61.111 0.00 0.00 0.00 4.35
325 326 1.078426 GCCCTAGTTGCCACACGAT 60.078 57.895 0.00 0.00 0.00 3.73
326 327 1.090052 GCCCTAGTTGCCACACGATC 61.090 60.000 0.00 0.00 0.00 3.69
327 328 0.537188 CCCTAGTTGCCACACGATCT 59.463 55.000 0.00 0.00 0.00 2.75
328 329 1.066143 CCCTAGTTGCCACACGATCTT 60.066 52.381 0.00 0.00 0.00 2.40
329 330 2.002586 CCTAGTTGCCACACGATCTTG 58.997 52.381 0.00 0.00 0.00 3.02
330 331 2.353704 CCTAGTTGCCACACGATCTTGA 60.354 50.000 6.16 0.00 0.00 3.02
331 332 2.479566 AGTTGCCACACGATCTTGAT 57.520 45.000 6.16 0.00 0.00 2.57
332 333 2.350522 AGTTGCCACACGATCTTGATC 58.649 47.619 6.16 0.78 0.00 2.92
340 341 3.352447 CGATCTTGATCGGTGCAGT 57.648 52.632 21.19 0.00 40.12 4.40
341 342 1.645034 CGATCTTGATCGGTGCAGTT 58.355 50.000 21.19 0.00 40.12 3.16
342 343 2.002586 CGATCTTGATCGGTGCAGTTT 58.997 47.619 21.19 0.00 40.12 2.66
343 344 2.416547 CGATCTTGATCGGTGCAGTTTT 59.583 45.455 21.19 0.00 40.12 2.43
344 345 3.725895 CGATCTTGATCGGTGCAGTTTTG 60.726 47.826 21.19 0.00 40.12 2.44
345 346 1.879380 TCTTGATCGGTGCAGTTTTGG 59.121 47.619 0.00 0.00 0.00 3.28
346 347 1.879380 CTTGATCGGTGCAGTTTTGGA 59.121 47.619 0.00 0.00 0.00 3.53
347 348 2.198827 TGATCGGTGCAGTTTTGGAT 57.801 45.000 0.00 0.00 0.00 3.41
348 349 1.811965 TGATCGGTGCAGTTTTGGATG 59.188 47.619 0.00 0.00 0.00 3.51
349 350 2.083774 GATCGGTGCAGTTTTGGATGA 58.916 47.619 0.00 0.00 0.00 2.92
350 351 2.198827 TCGGTGCAGTTTTGGATGAT 57.801 45.000 0.00 0.00 0.00 2.45
351 352 2.513753 TCGGTGCAGTTTTGGATGATT 58.486 42.857 0.00 0.00 0.00 2.57
352 353 2.890311 TCGGTGCAGTTTTGGATGATTT 59.110 40.909 0.00 0.00 0.00 2.17
353 354 3.320541 TCGGTGCAGTTTTGGATGATTTT 59.679 39.130 0.00 0.00 0.00 1.82
354 355 4.057432 CGGTGCAGTTTTGGATGATTTTT 58.943 39.130 0.00 0.00 0.00 1.94
355 356 5.010112 TCGGTGCAGTTTTGGATGATTTTTA 59.990 36.000 0.00 0.00 0.00 1.52
356 357 5.694006 CGGTGCAGTTTTGGATGATTTTTAA 59.306 36.000 0.00 0.00 0.00 1.52
357 358 6.346518 CGGTGCAGTTTTGGATGATTTTTAAC 60.347 38.462 0.00 0.00 0.00 2.01
358 359 6.481644 GGTGCAGTTTTGGATGATTTTTAACA 59.518 34.615 0.00 0.00 0.00 2.41
359 360 7.344441 GTGCAGTTTTGGATGATTTTTAACAC 58.656 34.615 0.00 0.00 0.00 3.32
360 361 6.199908 TGCAGTTTTGGATGATTTTTAACACG 59.800 34.615 0.00 0.00 0.00 4.49
361 362 6.580476 CAGTTTTGGATGATTTTTAACACGC 58.420 36.000 0.00 0.00 0.00 5.34
362 363 6.199908 CAGTTTTGGATGATTTTTAACACGCA 59.800 34.615 0.00 0.00 0.00 5.24
363 364 6.758886 AGTTTTGGATGATTTTTAACACGCAA 59.241 30.769 0.00 0.00 0.00 4.85
364 365 7.278868 AGTTTTGGATGATTTTTAACACGCAAA 59.721 29.630 0.00 0.00 0.00 3.68
365 366 6.761731 TTGGATGATTTTTAACACGCAAAG 57.238 33.333 0.00 0.00 0.00 2.77
366 367 5.837437 TGGATGATTTTTAACACGCAAAGT 58.163 33.333 0.00 0.00 0.00 2.66
367 368 6.276847 TGGATGATTTTTAACACGCAAAGTT 58.723 32.000 0.00 0.00 0.00 2.66
368 369 7.426410 TGGATGATTTTTAACACGCAAAGTTA 58.574 30.769 0.00 0.00 0.00 2.24
369 370 7.921214 TGGATGATTTTTAACACGCAAAGTTAA 59.079 29.630 0.00 0.00 39.07 2.01
370 371 8.756864 GGATGATTTTTAACACGCAAAGTTAAA 58.243 29.630 11.71 11.71 44.89 1.52
371 372 9.562752 GATGATTTTTAACACGCAAAGTTAAAC 57.437 29.630 14.11 7.23 45.69 2.01
372 373 8.462143 TGATTTTTAACACGCAAAGTTAAACA 57.538 26.923 14.11 10.33 45.69 2.83
373 374 8.922676 TGATTTTTAACACGCAAAGTTAAACAA 58.077 25.926 14.11 12.32 45.69 2.83
374 375 9.742552 GATTTTTAACACGCAAAGTTAAACAAA 57.257 25.926 14.11 9.59 45.69 2.83
376 377 9.530129 TTTTTAACACGCAAAGTTAAACAAATG 57.470 25.926 14.11 0.00 45.69 2.32
377 378 4.770351 ACACGCAAAGTTAAACAAATGC 57.230 36.364 0.00 0.00 0.00 3.56
378 379 3.553917 ACACGCAAAGTTAAACAAATGCC 59.446 39.130 0.00 0.00 0.00 4.40
379 380 3.553511 CACGCAAAGTTAAACAAATGCCA 59.446 39.130 0.00 0.00 0.00 4.92
380 381 4.210955 CACGCAAAGTTAAACAAATGCCAT 59.789 37.500 0.00 0.00 0.00 4.40
381 382 4.210955 ACGCAAAGTTAAACAAATGCCATG 59.789 37.500 0.00 0.00 0.00 3.66
382 383 4.210955 CGCAAAGTTAAACAAATGCCATGT 59.789 37.500 0.00 0.00 0.00 3.21
383 384 5.612276 CGCAAAGTTAAACAAATGCCATGTC 60.612 40.000 0.00 0.00 0.00 3.06
384 385 5.236047 GCAAAGTTAAACAAATGCCATGTCA 59.764 36.000 0.00 0.00 0.00 3.58
385 386 6.564499 GCAAAGTTAAACAAATGCCATGTCAG 60.564 38.462 0.00 0.00 0.00 3.51
386 387 5.789643 AGTTAAACAAATGCCATGTCAGT 57.210 34.783 0.00 0.00 0.00 3.41
387 388 6.160576 AGTTAAACAAATGCCATGTCAGTT 57.839 33.333 0.00 0.00 0.00 3.16
388 389 6.581712 AGTTAAACAAATGCCATGTCAGTTT 58.418 32.000 0.00 0.00 0.00 2.66
389 390 7.047271 AGTTAAACAAATGCCATGTCAGTTTT 58.953 30.769 0.00 0.00 0.00 2.43
390 391 5.738118 AAACAAATGCCATGTCAGTTTTG 57.262 34.783 2.18 2.18 0.00 2.44
391 392 3.132925 ACAAATGCCATGTCAGTTTTGC 58.867 40.909 3.39 0.00 0.00 3.68
392 393 3.132160 CAAATGCCATGTCAGTTTTGCA 58.868 40.909 0.00 0.00 0.00 4.08
393 394 3.472283 AATGCCATGTCAGTTTTGCAA 57.528 38.095 0.00 0.00 31.81 4.08
394 395 2.222007 TGCCATGTCAGTTTTGCAAC 57.778 45.000 0.00 0.00 0.00 4.17
395 396 1.202510 TGCCATGTCAGTTTTGCAACC 60.203 47.619 0.00 0.00 32.70 3.77
396 397 1.202510 GCCATGTCAGTTTTGCAACCA 60.203 47.619 0.00 0.00 32.70 3.67
397 398 2.741228 GCCATGTCAGTTTTGCAACCAA 60.741 45.455 0.00 0.00 32.70 3.67
398 399 3.529533 CCATGTCAGTTTTGCAACCAAA 58.470 40.909 0.00 0.00 39.08 3.28
399 400 3.937706 CCATGTCAGTTTTGCAACCAAAA 59.062 39.130 0.00 0.00 45.83 2.44
421 422 2.222227 AAAAGCCATCCAGGTTCTCC 57.778 50.000 0.00 0.00 40.61 3.71
422 423 0.035056 AAAGCCATCCAGGTTCTCCG 60.035 55.000 0.00 0.00 40.61 4.63
423 424 0.909610 AAGCCATCCAGGTTCTCCGA 60.910 55.000 0.00 0.00 40.61 4.55
424 425 0.909610 AGCCATCCAGGTTCTCCGAA 60.910 55.000 0.00 0.00 40.61 4.30
425 426 0.181350 GCCATCCAGGTTCTCCGAAT 59.819 55.000 0.00 0.00 40.61 3.34
426 427 1.959042 CCATCCAGGTTCTCCGAATG 58.041 55.000 0.00 0.00 39.05 2.67
427 428 1.303309 CATCCAGGTTCTCCGAATGC 58.697 55.000 0.00 0.00 39.05 3.56
428 429 0.179073 ATCCAGGTTCTCCGAATGCG 60.179 55.000 0.00 0.00 39.05 4.73
429 430 1.079127 CCAGGTTCTCCGAATGCGT 60.079 57.895 0.00 0.00 39.05 5.24
430 431 0.673644 CCAGGTTCTCCGAATGCGTT 60.674 55.000 0.00 0.00 39.05 4.84
431 432 0.443869 CAGGTTCTCCGAATGCGTTG 59.556 55.000 0.00 0.00 39.05 4.10
432 433 0.320374 AGGTTCTCCGAATGCGTTGA 59.680 50.000 0.00 0.00 39.05 3.18
433 434 1.153353 GGTTCTCCGAATGCGTTGAA 58.847 50.000 0.00 0.00 35.23 2.69
434 435 1.533731 GGTTCTCCGAATGCGTTGAAA 59.466 47.619 0.00 0.00 35.23 2.69
435 436 2.031508 GGTTCTCCGAATGCGTTGAAAA 60.032 45.455 0.00 0.00 35.23 2.29
436 437 2.961522 TCTCCGAATGCGTTGAAAAC 57.038 45.000 0.00 0.00 45.31 2.43
437 438 2.489971 TCTCCGAATGCGTTGAAAACT 58.510 42.857 0.00 0.00 46.99 2.66
438 439 2.223144 TCTCCGAATGCGTTGAAAACTG 59.777 45.455 0.00 0.00 46.99 3.16
439 440 1.052287 CCGAATGCGTTGAAAACTGC 58.948 50.000 0.00 0.00 46.99 4.40
440 441 0.697010 CGAATGCGTTGAAAACTGCG 59.303 50.000 0.00 0.00 46.99 5.18
441 442 1.753956 GAATGCGTTGAAAACTGCGT 58.246 45.000 0.00 0.00 46.99 5.24
442 443 1.447938 GAATGCGTTGAAAACTGCGTG 59.552 47.619 0.00 0.00 46.99 5.34
443 444 0.660488 ATGCGTTGAAAACTGCGTGA 59.340 45.000 0.00 0.00 46.99 4.35
444 445 0.660488 TGCGTTGAAAACTGCGTGAT 59.340 45.000 0.00 0.00 46.99 3.06
445 446 1.044725 GCGTTGAAAACTGCGTGATG 58.955 50.000 0.00 0.00 46.99 3.07
446 447 1.333702 GCGTTGAAAACTGCGTGATGA 60.334 47.619 0.00 0.00 46.99 2.92
447 448 2.852901 GCGTTGAAAACTGCGTGATGAA 60.853 45.455 0.00 0.00 46.99 2.57
448 449 2.713976 CGTTGAAAACTGCGTGATGAAC 59.286 45.455 0.00 0.00 46.99 3.18
460 461 3.109230 GTGATGAACGTTCACAGATGC 57.891 47.619 31.87 16.86 42.43 3.91
461 462 2.076100 TGATGAACGTTCACAGATGCC 58.924 47.619 31.87 15.06 40.49 4.40
462 463 2.076100 GATGAACGTTCACAGATGCCA 58.924 47.619 31.87 8.06 40.49 4.92
463 464 2.183478 TGAACGTTCACAGATGCCAT 57.817 45.000 26.53 0.00 31.01 4.40
464 465 2.503331 TGAACGTTCACAGATGCCATT 58.497 42.857 26.53 0.00 31.01 3.16
465 466 2.884012 TGAACGTTCACAGATGCCATTT 59.116 40.909 26.53 0.00 31.01 2.32
466 467 3.058293 TGAACGTTCACAGATGCCATTTC 60.058 43.478 26.53 0.00 31.01 2.17
467 468 1.812571 ACGTTCACAGATGCCATTTCC 59.187 47.619 0.00 0.00 0.00 3.13
468 469 2.086869 CGTTCACAGATGCCATTTCCT 58.913 47.619 0.00 0.00 0.00 3.36
469 470 3.270027 CGTTCACAGATGCCATTTCCTA 58.730 45.455 0.00 0.00 0.00 2.94
470 471 3.879295 CGTTCACAGATGCCATTTCCTAT 59.121 43.478 0.00 0.00 0.00 2.57
471 472 4.260907 CGTTCACAGATGCCATTTCCTATG 60.261 45.833 0.00 0.00 0.00 2.23
472 473 3.824133 TCACAGATGCCATTTCCTATGG 58.176 45.455 0.00 0.00 41.99 2.74
479 480 1.663695 CCATTTCCTATGGCGAACGT 58.336 50.000 0.00 0.00 31.75 3.99
480 481 1.597663 CCATTTCCTATGGCGAACGTC 59.402 52.381 0.00 0.00 31.75 4.34
481 482 1.597663 CATTTCCTATGGCGAACGTCC 59.402 52.381 0.00 0.00 0.00 4.79
482 483 0.458889 TTTCCTATGGCGAACGTCCG 60.459 55.000 0.00 0.00 0.00 4.79
490 491 2.333938 CGAACGTCCGCCGGATAT 59.666 61.111 10.04 0.00 42.24 1.63
491 492 2.014554 CGAACGTCCGCCGGATATG 61.015 63.158 10.04 5.18 42.24 1.78
492 493 1.663702 GAACGTCCGCCGGATATGG 60.664 63.158 10.04 1.73 42.24 2.74
503 504 3.652057 CCGGATATGGCCATCCTTTAT 57.348 47.619 24.80 9.97 42.12 1.40
504 505 3.968265 CCGGATATGGCCATCCTTTATT 58.032 45.455 24.80 0.00 42.12 1.40
505 506 4.344104 CCGGATATGGCCATCCTTTATTT 58.656 43.478 24.80 0.00 42.12 1.40
506 507 5.505780 CCGGATATGGCCATCCTTTATTTA 58.494 41.667 24.80 0.46 42.12 1.40
507 508 5.357032 CCGGATATGGCCATCCTTTATTTAC 59.643 44.000 24.80 3.87 42.12 2.01
508 509 5.064707 CGGATATGGCCATCCTTTATTTACG 59.935 44.000 24.80 11.73 42.12 3.18
509 510 5.357032 GGATATGGCCATCCTTTATTTACGG 59.643 44.000 24.80 0.00 41.24 4.02
510 511 2.303175 TGGCCATCCTTTATTTACGGC 58.697 47.619 0.00 0.00 37.33 5.68
512 513 1.611977 GCCATCCTTTATTTACGGCCC 59.388 52.381 0.00 0.00 31.76 5.80
513 514 2.235891 CCATCCTTTATTTACGGCCCC 58.764 52.381 0.00 0.00 0.00 5.80
514 515 1.877443 CATCCTTTATTTACGGCCCCG 59.123 52.381 4.96 4.96 46.03 5.73
515 516 0.464193 TCCTTTATTTACGGCCCCGC 60.464 55.000 6.63 0.00 44.19 6.13
516 517 0.748729 CCTTTATTTACGGCCCCGCA 60.749 55.000 6.63 0.00 44.19 5.69
517 518 1.096416 CTTTATTTACGGCCCCGCAA 58.904 50.000 6.63 0.00 44.19 4.85
629 630 4.527583 GCGCAGAGCCCCAGAGAG 62.528 72.222 0.30 0.00 40.81 3.20
632 633 1.381056 GCAGAGCCCCAGAGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
633 634 1.394266 GCAGAGCCCCAGAGAGAGAG 61.394 65.000 0.00 0.00 0.00 3.20
716 973 1.812922 CCCGCACAGCTCATCTCAC 60.813 63.158 0.00 0.00 0.00 3.51
878 1170 2.574955 CCGATCCAGATCCGACCCC 61.575 68.421 2.11 0.00 34.40 4.95
961 1263 3.636231 TGCTCCGGTGACCCCTTG 61.636 66.667 7.92 0.00 0.00 3.61
975 1302 3.737172 CTTGTGCGGGGCGGAAAG 61.737 66.667 0.00 0.00 0.00 2.62
1079 1406 4.640647 GCTCCCACGAATCCTTTTCTTATT 59.359 41.667 0.00 0.00 0.00 1.40
1080 1407 5.220873 GCTCCCACGAATCCTTTTCTTATTC 60.221 44.000 0.00 0.00 0.00 1.75
1081 1408 5.811190 TCCCACGAATCCTTTTCTTATTCA 58.189 37.500 0.00 0.00 31.37 2.57
1098 1425 8.002984 TCTTATTCATTAATTTCCCGGGTTTC 57.997 34.615 22.86 0.00 0.00 2.78
1147 1478 7.025963 GTGTCATCTTAAAAGCTGGAATTGAG 58.974 38.462 0.00 0.00 0.00 3.02
1188 1519 6.424812 GCTTATGAAGGCTGTTGAACATTTTT 59.575 34.615 0.00 0.00 0.00 1.94
1242 1583 0.906775 TCGATTTGTACCTGACCCCC 59.093 55.000 0.00 0.00 0.00 5.40
1250 1591 1.625315 GTACCTGACCCCCGTACTTTT 59.375 52.381 0.00 0.00 31.63 2.27
1336 1677 9.782028 CAAAAATACGTCAGATTTTCATTTGTG 57.218 29.630 7.73 0.54 35.86 3.33
1354 1698 0.610174 TGGGCTGTCTGCTTCACTAG 59.390 55.000 1.44 0.00 42.39 2.57
1355 1699 0.610687 GGGCTGTCTGCTTCACTAGT 59.389 55.000 1.44 0.00 42.39 2.57
1356 1700 1.674221 GGGCTGTCTGCTTCACTAGTG 60.674 57.143 17.17 17.17 42.39 2.74
1361 1705 0.036952 TCTGCTTCACTAGTGGCTGC 60.037 55.000 22.48 21.36 0.00 5.25
1396 1758 6.775594 GATGTAATCCTTTTAAGGCCAAGT 57.224 37.500 5.01 0.00 46.06 3.16
1397 1759 7.170393 GATGTAATCCTTTTAAGGCCAAGTT 57.830 36.000 5.01 0.00 46.06 2.66
1398 1760 6.987403 TGTAATCCTTTTAAGGCCAAGTTT 57.013 33.333 5.01 0.00 46.06 2.66
1501 1884 6.405619 GGAGCGGAATGTATACCTAATAGACC 60.406 46.154 0.00 0.00 0.00 3.85
1561 1944 9.366216 GGAAAGGAAAATTATAATGTTGGTGAC 57.634 33.333 5.57 0.00 0.00 3.67
1616 2000 4.098349 TCAATTTGGAGGCATTAGCATGAC 59.902 41.667 0.00 0.00 44.61 3.06
1639 2023 9.617523 TGACATTCTGCAAATGAAGAGAATATA 57.382 29.630 20.96 0.39 34.18 0.86
1744 2128 6.313658 TGTTATTGCAGTGTGCTATTCAGTAG 59.686 38.462 1.27 0.00 45.31 2.57
1760 2149 6.814506 TTCAGTAGTACCTCTGTTCACTAC 57.185 41.667 12.52 3.17 42.30 2.73
1785 2174 3.482436 AGGACGTTTTGGCAGTTCAATA 58.518 40.909 0.00 0.00 0.00 1.90
1830 2219 3.753294 AGTGAACAGAGGGTGTACTTG 57.247 47.619 0.00 0.00 39.03 3.16
1893 2288 9.990360 TCTACTCTTATGTAACATGTTTTGTGA 57.010 29.630 17.78 7.33 38.99 3.58
1915 2310 1.276421 GCACTCCTCAGGCTTCTTACA 59.724 52.381 0.00 0.00 0.00 2.41
2037 2432 3.119101 ACAAGAGCATCAAGGGTACGTAG 60.119 47.826 0.00 0.00 37.82 3.51
2101 2496 5.036737 CACTGCTTGAAGATTTTCGTTTGT 58.963 37.500 0.00 0.00 36.04 2.83
2116 2511 4.874970 TCGTTTGTAAACTAGTCCAGGAC 58.125 43.478 12.25 12.25 36.77 3.85
2128 2523 2.887152 AGTCCAGGACATGTTTTTCTGC 59.113 45.455 22.31 0.00 34.60 4.26
2138 2533 4.751098 ACATGTTTTTCTGCGCAAATGATT 59.249 33.333 13.05 0.00 0.00 2.57
2169 2564 3.982516 TCTAGGAACCATGCTCTGTACT 58.017 45.455 0.00 0.00 0.00 2.73
2193 2588 8.383175 ACTATTGGAATTCGGTAATATGGTGAT 58.617 33.333 0.00 0.00 0.00 3.06
2201 2596 2.301870 GGTAATATGGTGATCGGCCTCA 59.698 50.000 0.00 0.00 0.00 3.86
2235 2630 6.771076 TCTAAGTTGCATTGCACGTATTTAG 58.229 36.000 11.66 12.98 38.71 1.85
2248 2643 7.041721 TGCACGTATTTAGAATCAGAGAACAT 58.958 34.615 0.00 0.00 0.00 2.71
2541 2936 5.064452 GCAATAACAGGACATCAGTTCTCAG 59.936 44.000 0.00 0.00 28.33 3.35
2734 3129 5.300034 TGTGAAAACTCATCAAGCAACATCT 59.700 36.000 0.00 0.00 0.00 2.90
2830 3225 5.522460 TCGGTCTCGAATTATGTTGAATTCC 59.478 40.000 2.27 0.00 43.03 3.01
2839 3234 7.066284 CGAATTATGTTGAATTCCTCTTCAGGT 59.934 37.037 2.27 0.00 41.04 4.00
3251 3646 1.302511 CGTCCAAGTTCCCCAGGTG 60.303 63.158 0.00 0.00 0.00 4.00
3331 3726 1.841556 AAGCTCCCCAAGTCCACGA 60.842 57.895 0.00 0.00 0.00 4.35
3382 3777 4.487804 TCCCTGATTTCCCAAATGAAACA 58.512 39.130 0.00 0.00 37.08 2.83
3442 3837 1.680522 CTGCTGGTAGATCACGCCCT 61.681 60.000 0.00 0.00 0.00 5.19
3547 3942 5.237561 TGCTGCAAGTCGTAATAAGTTTTCA 59.762 36.000 0.00 0.00 35.30 2.69
3608 4003 3.119352 CCAAAATAGGCAGTCTGAAAGGC 60.119 47.826 3.32 0.00 40.46 4.35
3673 4068 2.880890 AGTTGCAGGCGATAATGGATTC 59.119 45.455 0.00 0.00 0.00 2.52
3733 4128 7.537715 CAATCAAGCACATGGTATGTTTCTTA 58.462 34.615 0.00 0.00 42.70 2.10
3806 4201 6.512091 GCATTACGGTTTTGTTACTGACTGAA 60.512 38.462 0.00 0.00 0.00 3.02
3900 4298 5.952347 ACAGTGGTGAAGTAGTCATATCTGA 59.048 40.000 0.00 0.00 38.90 3.27
3903 4301 4.342378 TGGTGAAGTAGTCATATCTGAGCC 59.658 45.833 0.00 0.00 38.90 4.70
3928 4326 5.244851 TCTTTATGCAACATTACAAGGCCAA 59.755 36.000 5.01 0.00 0.00 4.52
3937 4335 8.550376 GCAACATTACAAGGCCAATATATTTTG 58.450 33.333 5.01 0.00 0.00 2.44
3995 4393 8.088365 TGAATTAGTCATATGGTCCAGAATACG 58.912 37.037 2.13 0.00 0.00 3.06
4039 4438 7.547019 TGACTATTTCACATCTGAGTAGCAAAG 59.453 37.037 0.00 0.00 0.00 2.77
4086 4511 6.331845 TGAAAATACACATAAGCATTGCTGG 58.668 36.000 12.82 7.74 39.62 4.85
4189 4614 7.254319 GCATTTTGCATTTGAATATCCTGTCAG 60.254 37.037 0.00 0.00 44.26 3.51
4244 4669 6.957631 TGGCTCCTTGTTAGATCTATTTCAA 58.042 36.000 2.58 8.81 0.00 2.69
4479 4907 1.291877 CCAACGGGCACTTCTTCTCG 61.292 60.000 0.00 0.00 0.00 4.04
4524 4952 4.421479 AACGGAGGCAGCTCGACG 62.421 66.667 9.58 0.00 0.00 5.12
4590 5018 1.360551 CGAGCTGGACATCTACGGG 59.639 63.158 0.00 0.00 0.00 5.28
4785 5213 3.446161 TCTGTATGTAAAGTCTGTCCCCG 59.554 47.826 0.00 0.00 0.00 5.73
4786 5214 2.498481 TGTATGTAAAGTCTGTCCCCGG 59.502 50.000 0.00 0.00 0.00 5.73
4787 5215 1.652947 ATGTAAAGTCTGTCCCCGGT 58.347 50.000 0.00 0.00 0.00 5.28
4789 5217 0.971386 GTAAAGTCTGTCCCCGGTGA 59.029 55.000 0.00 0.00 0.00 4.02
4790 5218 1.553704 GTAAAGTCTGTCCCCGGTGAT 59.446 52.381 0.00 0.00 0.00 3.06
4791 5219 0.613777 AAAGTCTGTCCCCGGTGATC 59.386 55.000 0.00 0.00 0.00 2.92
4792 5220 0.544357 AAGTCTGTCCCCGGTGATCA 60.544 55.000 0.00 0.00 0.00 2.92
4807 5236 0.541863 GATCACCTGATTCCCCACGT 59.458 55.000 0.00 0.00 34.37 4.49
4824 5253 1.395608 ACGTTCCTTCGTGTTGTGTTG 59.604 47.619 0.00 0.00 42.56 3.33
4838 5270 5.007234 GTGTTGTGTTGCAAGATGTGTAGTA 59.993 40.000 0.00 0.00 37.83 1.82
4850 5282 5.858381 AGATGTGTAGTATGTATGCCCTTG 58.142 41.667 0.00 0.00 0.00 3.61
4851 5283 5.366768 AGATGTGTAGTATGTATGCCCTTGT 59.633 40.000 0.00 0.00 0.00 3.16
4852 5284 5.429681 TGTGTAGTATGTATGCCCTTGTT 57.570 39.130 0.00 0.00 0.00 2.83
4853 5285 5.182487 TGTGTAGTATGTATGCCCTTGTTG 58.818 41.667 0.00 0.00 0.00 3.33
4854 5286 4.574828 GTGTAGTATGTATGCCCTTGTTGG 59.425 45.833 0.00 0.00 0.00 3.77
4866 5357 1.185315 CTTGTTGGGCCGAAATGGAT 58.815 50.000 0.01 0.00 42.00 3.41
4867 5358 2.374184 CTTGTTGGGCCGAAATGGATA 58.626 47.619 0.01 0.00 42.00 2.59
4868 5359 2.051334 TGTTGGGCCGAAATGGATAG 57.949 50.000 0.01 0.00 42.00 2.08
4889 5390 1.154197 GCTCCGGGTTTGTGTAACTC 58.846 55.000 0.00 0.00 38.04 3.01
5059 5561 1.374125 CGTTGGACCATCTCACGCA 60.374 57.895 3.63 0.00 0.00 5.24
5086 5597 1.682684 ACTCCCAATCGACGCCTCT 60.683 57.895 0.00 0.00 0.00 3.69
5111 5663 0.672342 ACACAAGTCGGAAGCGTAGT 59.328 50.000 0.00 0.00 0.00 2.73
5137 5689 4.142752 GGTTAACCAGAGCCGTAAACAATC 60.143 45.833 20.12 0.00 35.64 2.67
5148 5700 3.565482 CCGTAAACAATCCCATCCTGATG 59.435 47.826 0.00 0.00 38.51 3.07
5159 5711 2.424557 CATCCTGATGGTAGATGCTGC 58.575 52.381 0.00 0.00 35.24 5.25
5160 5712 1.798626 TCCTGATGGTAGATGCTGCT 58.201 50.000 0.00 0.00 34.23 4.24
5161 5713 1.415289 TCCTGATGGTAGATGCTGCTG 59.585 52.381 0.00 0.00 34.23 4.41
5167 5719 0.179062 GGTAGATGCTGCTGGTGGAG 60.179 60.000 0.00 0.00 34.56 3.86
5289 5844 4.021925 AAGTGGCCCACGAGGAGC 62.022 66.667 8.52 1.94 39.64 4.70
5433 6021 2.186160 TGCAGCACCGGTTTCTGTG 61.186 57.895 25.83 12.72 35.58 3.66
5473 6061 1.837051 TGAGACAAGGGTGGTCGCT 60.837 57.895 0.00 0.00 40.20 4.93
5558 6148 3.616219 ACAATACTTGTGGTGTGTGTGT 58.384 40.909 0.00 0.00 43.48 3.72
5559 6149 3.376859 ACAATACTTGTGGTGTGTGTGTG 59.623 43.478 0.00 0.00 43.48 3.82
5561 6151 1.164411 ACTTGTGGTGTGTGTGTGTG 58.836 50.000 0.00 0.00 0.00 3.82
5563 6153 0.877743 TTGTGGTGTGTGTGTGTGTG 59.122 50.000 0.00 0.00 0.00 3.82
5564 6154 0.250510 TGTGGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
5565 6155 0.167908 GTGGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
5566 6156 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
5631 6221 0.605589 GATCTCCAGGCATCTACGGG 59.394 60.000 0.00 0.00 0.00 5.28
5663 6253 1.454479 GACCTGACCATGGGCCATG 60.454 63.158 34.76 34.76 41.10 3.66
5671 6261 2.980541 CATGGGCCATGGTGTCTTT 58.019 52.632 34.26 1.05 38.11 2.52
5674 6264 1.907807 GGGCCATGGTGTCTTTGCA 60.908 57.895 14.67 0.00 0.00 4.08
5675 6265 1.259840 GGGCCATGGTGTCTTTGCAT 61.260 55.000 14.67 0.00 0.00 3.96
5676 6266 0.108520 GGCCATGGTGTCTTTGCATG 60.109 55.000 14.67 0.00 0.00 4.06
5677 6267 0.889994 GCCATGGTGTCTTTGCATGA 59.110 50.000 14.67 0.00 0.00 3.07
5678 6268 1.403249 GCCATGGTGTCTTTGCATGAC 60.403 52.381 14.67 11.90 35.21 3.06
5679 6269 1.203052 CCATGGTGTCTTTGCATGACC 59.797 52.381 2.57 5.77 33.83 4.02
5680 6270 1.887854 CATGGTGTCTTTGCATGACCA 59.112 47.619 14.98 10.38 40.89 4.02
5681 6271 2.291209 TGGTGTCTTTGCATGACCAT 57.709 45.000 14.98 0.00 31.64 3.55
5682 6272 1.887854 TGGTGTCTTTGCATGACCATG 59.112 47.619 14.98 5.67 41.60 3.66
5683 6273 1.203052 GGTGTCTTTGCATGACCATGG 59.797 52.381 11.19 11.19 39.16 3.66
5684 6274 1.203052 GTGTCTTTGCATGACCATGGG 59.797 52.381 18.09 0.00 39.16 4.00
5685 6275 0.174162 GTCTTTGCATGACCATGGGC 59.826 55.000 18.09 15.32 39.16 5.36
5686 6276 0.971959 TCTTTGCATGACCATGGGCC 60.972 55.000 17.19 7.34 39.16 5.80
5689 6279 1.331399 TTGCATGACCATGGGCCATG 61.331 55.000 34.76 34.76 41.10 3.66
5702 6292 0.174162 GGCCATGGTGTCTTTGCATC 59.826 55.000 14.67 0.00 0.00 3.91
5703 6293 0.179156 GCCATGGTGTCTTTGCATCG 60.179 55.000 14.67 0.00 0.00 3.84
5704 6294 1.452110 CCATGGTGTCTTTGCATCGA 58.548 50.000 2.57 0.00 0.00 3.59
5705 6295 2.019249 CCATGGTGTCTTTGCATCGAT 58.981 47.619 2.57 0.00 0.00 3.59
5706 6296 2.032550 CCATGGTGTCTTTGCATCGATC 59.967 50.000 2.57 0.00 0.00 3.69
5707 6297 1.358877 TGGTGTCTTTGCATCGATCG 58.641 50.000 9.36 9.36 0.00 3.69
5708 6298 1.067213 TGGTGTCTTTGCATCGATCGA 60.067 47.619 21.86 21.86 0.00 3.59
5709 6299 1.590238 GGTGTCTTTGCATCGATCGAG 59.410 52.381 23.84 15.68 0.00 4.04
5710 6300 1.590238 GTGTCTTTGCATCGATCGAGG 59.410 52.381 24.45 24.45 0.00 4.63
5711 6301 1.204704 TGTCTTTGCATCGATCGAGGT 59.795 47.619 28.10 8.55 0.00 3.85
5712 6302 2.425668 TGTCTTTGCATCGATCGAGGTA 59.574 45.455 28.10 22.72 0.00 3.08
5713 6303 3.119280 TGTCTTTGCATCGATCGAGGTAA 60.119 43.478 25.52 25.52 0.00 2.85
5714 6304 3.243177 GTCTTTGCATCGATCGAGGTAAC 59.757 47.826 28.27 16.86 31.10 2.50
5734 6324 8.750515 GGTAACTAGAGATGTAAAGTACTCCT 57.249 38.462 0.00 0.00 0.00 3.69
5735 6325 9.187996 GGTAACTAGAGATGTAAAGTACTCCTT 57.812 37.037 0.00 0.00 33.79 3.36
5737 6327 7.885009 ACTAGAGATGTAAAGTACTCCTTCC 57.115 40.000 0.00 0.00 31.27 3.46
5738 6328 5.838531 AGAGATGTAAAGTACTCCTTCCG 57.161 43.478 0.00 0.00 31.27 4.30
5739 6329 5.262804 AGAGATGTAAAGTACTCCTTCCGT 58.737 41.667 0.00 0.00 31.27 4.69
5740 6330 5.357596 AGAGATGTAAAGTACTCCTTCCGTC 59.642 44.000 0.00 0.00 31.27 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.933723 CTGACACATCCACTAATTCATCATATA 57.066 33.333 0.00 0.00 0.00 0.86
40 41 8.654094 TCTGACACATCCACTAATTCATCATAT 58.346 33.333 0.00 0.00 0.00 1.78
41 42 8.021898 TCTGACACATCCACTAATTCATCATA 57.978 34.615 0.00 0.00 0.00 2.15
42 43 6.892485 TCTGACACATCCACTAATTCATCAT 58.108 36.000 0.00 0.00 0.00 2.45
43 44 6.298441 TCTGACACATCCACTAATTCATCA 57.702 37.500 0.00 0.00 0.00 3.07
44 45 7.615582 TTTCTGACACATCCACTAATTCATC 57.384 36.000 0.00 0.00 0.00 2.92
45 46 9.113838 GTATTTCTGACACATCCACTAATTCAT 57.886 33.333 0.00 0.00 0.00 2.57
46 47 8.100164 TGTATTTCTGACACATCCACTAATTCA 58.900 33.333 0.00 0.00 0.00 2.57
47 48 8.492673 TGTATTTCTGACACATCCACTAATTC 57.507 34.615 0.00 0.00 0.00 2.17
48 49 8.896744 CATGTATTTCTGACACATCCACTAATT 58.103 33.333 0.00 0.00 30.59 1.40
49 50 8.267183 TCATGTATTTCTGACACATCCACTAAT 58.733 33.333 0.00 0.00 30.59 1.73
50 51 7.619965 TCATGTATTTCTGACACATCCACTAA 58.380 34.615 0.00 0.00 30.59 2.24
51 52 7.181569 TCATGTATTTCTGACACATCCACTA 57.818 36.000 0.00 0.00 30.59 2.74
52 53 6.053632 TCATGTATTTCTGACACATCCACT 57.946 37.500 0.00 0.00 30.59 4.00
53 54 6.932356 ATCATGTATTTCTGACACATCCAC 57.068 37.500 0.00 0.00 30.59 4.02
54 55 7.943079 AAATCATGTATTTCTGACACATCCA 57.057 32.000 0.00 0.00 32.00 3.41
86 87 8.312896 TGAAATACGTTTTAATGTGAGCTACA 57.687 30.769 0.00 0.00 44.87 2.74
87 88 9.769093 AATGAAATACGTTTTAATGTGAGCTAC 57.231 29.630 0.00 0.00 0.00 3.58
161 162 9.737427 TGAAATTCACGCTTTTTATGTTCTAAA 57.263 25.926 0.00 0.00 0.00 1.85
162 163 9.737427 TTGAAATTCACGCTTTTTATGTTCTAA 57.263 25.926 0.00 0.00 0.00 2.10
163 164 9.906660 ATTGAAATTCACGCTTTTTATGTTCTA 57.093 25.926 0.00 0.00 0.00 2.10
164 165 8.816640 ATTGAAATTCACGCTTTTTATGTTCT 57.183 26.923 0.00 0.00 0.00 3.01
169 170 9.971744 GCAATAATTGAAATTCACGCTTTTTAT 57.028 25.926 0.00 0.00 0.00 1.40
170 171 8.982685 TGCAATAATTGAAATTCACGCTTTTTA 58.017 25.926 0.00 0.00 0.00 1.52
171 172 7.859598 TGCAATAATTGAAATTCACGCTTTTT 58.140 26.923 0.00 0.00 0.00 1.94
172 173 7.418840 TGCAATAATTGAAATTCACGCTTTT 57.581 28.000 0.00 0.00 0.00 2.27
173 174 7.599630 ATGCAATAATTGAAATTCACGCTTT 57.400 28.000 0.00 0.00 0.00 3.51
174 175 7.599630 AATGCAATAATTGAAATTCACGCTT 57.400 28.000 0.00 0.00 0.00 4.68
175 176 8.876275 ATAATGCAATAATTGAAATTCACGCT 57.124 26.923 0.00 0.00 0.00 5.07
176 177 9.919348 AAATAATGCAATAATTGAAATTCACGC 57.081 25.926 0.00 0.00 0.00 5.34
191 192 8.747471 CCCACCCAATTTTTAAAATAATGCAAT 58.253 29.630 3.17 0.00 0.00 3.56
192 193 7.309438 GCCCACCCAATTTTTAAAATAATGCAA 60.309 33.333 3.17 0.00 0.00 4.08
193 194 6.151817 GCCCACCCAATTTTTAAAATAATGCA 59.848 34.615 3.17 0.00 0.00 3.96
194 195 6.559810 GCCCACCCAATTTTTAAAATAATGC 58.440 36.000 3.17 0.00 0.00 3.56
195 196 6.183360 CCGCCCACCCAATTTTTAAAATAATG 60.183 38.462 3.17 0.00 0.00 1.90
196 197 5.883115 CCGCCCACCCAATTTTTAAAATAAT 59.117 36.000 3.17 0.00 0.00 1.28
197 198 5.246307 CCGCCCACCCAATTTTTAAAATAA 58.754 37.500 3.17 0.00 0.00 1.40
198 199 4.833390 CCGCCCACCCAATTTTTAAAATA 58.167 39.130 3.17 0.00 0.00 1.40
199 200 3.680490 CCGCCCACCCAATTTTTAAAAT 58.320 40.909 0.55 0.00 0.00 1.82
200 201 2.810767 GCCGCCCACCCAATTTTTAAAA 60.811 45.455 0.00 0.00 0.00 1.52
201 202 1.270893 GCCGCCCACCCAATTTTTAAA 60.271 47.619 0.00 0.00 0.00 1.52
202 203 0.321996 GCCGCCCACCCAATTTTTAA 59.678 50.000 0.00 0.00 0.00 1.52
203 204 0.832135 TGCCGCCCACCCAATTTTTA 60.832 50.000 0.00 0.00 0.00 1.52
204 205 1.487850 ATGCCGCCCACCCAATTTTT 61.488 50.000 0.00 0.00 0.00 1.94
205 206 1.487850 AATGCCGCCCACCCAATTTT 61.488 50.000 0.00 0.00 0.00 1.82
206 207 0.616111 TAATGCCGCCCACCCAATTT 60.616 50.000 0.00 0.00 0.00 1.82
207 208 1.000993 TAATGCCGCCCACCCAATT 59.999 52.632 0.00 0.00 0.00 2.32
208 209 1.455587 CTAATGCCGCCCACCCAAT 60.456 57.895 0.00 0.00 0.00 3.16
209 210 2.044451 CTAATGCCGCCCACCCAA 60.044 61.111 0.00 0.00 0.00 4.12
210 211 4.813235 GCTAATGCCGCCCACCCA 62.813 66.667 0.00 0.00 0.00 4.51
211 212 4.813235 TGCTAATGCCGCCCACCC 62.813 66.667 0.00 0.00 38.71 4.61
212 213 1.675720 AATTGCTAATGCCGCCCACC 61.676 55.000 0.00 0.00 38.71 4.61
213 214 0.249031 GAATTGCTAATGCCGCCCAC 60.249 55.000 0.00 0.00 38.71 4.61
214 215 1.391157 GGAATTGCTAATGCCGCCCA 61.391 55.000 0.00 0.00 38.71 5.36
215 216 1.363807 GGAATTGCTAATGCCGCCC 59.636 57.895 0.00 0.00 38.71 6.13
235 236 4.266976 CCGTAAGTAAAACCTGTGCGATAG 59.733 45.833 0.00 0.00 0.00 2.08
236 237 4.082300 TCCGTAAGTAAAACCTGTGCGATA 60.082 41.667 0.00 0.00 0.00 2.92
237 238 2.997986 CCGTAAGTAAAACCTGTGCGAT 59.002 45.455 0.00 0.00 0.00 4.58
238 239 2.035704 TCCGTAAGTAAAACCTGTGCGA 59.964 45.455 0.00 0.00 0.00 5.10
239 240 2.406130 TCCGTAAGTAAAACCTGTGCG 58.594 47.619 0.00 0.00 0.00 5.34
240 241 4.816786 TTTCCGTAAGTAAAACCTGTGC 57.183 40.909 0.00 0.00 0.00 4.57
241 242 7.662604 ACTATTTCCGTAAGTAAAACCTGTG 57.337 36.000 0.00 0.00 0.00 3.66
242 243 9.948964 ATTACTATTTCCGTAAGTAAAACCTGT 57.051 29.630 0.00 0.00 38.72 4.00
244 245 9.387257 CCATTACTATTTCCGTAAGTAAAACCT 57.613 33.333 0.00 0.00 38.72 3.50
245 246 8.615211 CCCATTACTATTTCCGTAAGTAAAACC 58.385 37.037 0.00 0.00 38.72 3.27
246 247 8.124823 GCCCATTACTATTTCCGTAAGTAAAAC 58.875 37.037 0.00 0.00 38.72 2.43
247 248 7.011295 CGCCCATTACTATTTCCGTAAGTAAAA 59.989 37.037 0.00 0.00 38.72 1.52
248 249 6.479660 CGCCCATTACTATTTCCGTAAGTAAA 59.520 38.462 0.00 0.00 38.72 2.01
249 250 5.984926 CGCCCATTACTATTTCCGTAAGTAA 59.015 40.000 0.00 0.00 39.36 2.24
250 251 5.301551 TCGCCCATTACTATTTCCGTAAGTA 59.698 40.000 0.00 0.00 31.12 2.24
251 252 4.099881 TCGCCCATTACTATTTCCGTAAGT 59.900 41.667 0.00 0.00 31.12 2.24
252 253 4.624015 TCGCCCATTACTATTTCCGTAAG 58.376 43.478 0.00 0.00 31.12 2.34
253 254 4.669206 TCGCCCATTACTATTTCCGTAA 57.331 40.909 0.00 0.00 0.00 3.18
254 255 4.141981 TGTTCGCCCATTACTATTTCCGTA 60.142 41.667 0.00 0.00 0.00 4.02
255 256 3.200483 GTTCGCCCATTACTATTTCCGT 58.800 45.455 0.00 0.00 0.00 4.69
256 257 3.199677 TGTTCGCCCATTACTATTTCCG 58.800 45.455 0.00 0.00 0.00 4.30
257 258 5.560183 CGAATGTTCGCCCATTACTATTTCC 60.560 44.000 1.90 0.00 44.26 3.13
258 259 5.440685 CGAATGTTCGCCCATTACTATTTC 58.559 41.667 1.90 0.00 44.26 2.17
259 260 5.418310 CGAATGTTCGCCCATTACTATTT 57.582 39.130 1.90 0.00 44.26 1.40
273 274 3.058224 CAGTTTCCCCTTGACGAATGTTC 60.058 47.826 0.00 0.00 0.00 3.18
274 275 2.884639 CAGTTTCCCCTTGACGAATGTT 59.115 45.455 0.00 0.00 0.00 2.71
275 276 2.504367 CAGTTTCCCCTTGACGAATGT 58.496 47.619 0.00 0.00 0.00 2.71
276 277 1.200020 GCAGTTTCCCCTTGACGAATG 59.800 52.381 0.00 0.00 0.00 2.67
277 278 1.534729 GCAGTTTCCCCTTGACGAAT 58.465 50.000 0.00 0.00 0.00 3.34
278 279 0.536460 GGCAGTTTCCCCTTGACGAA 60.536 55.000 0.00 0.00 0.00 3.85
279 280 1.072505 GGCAGTTTCCCCTTGACGA 59.927 57.895 0.00 0.00 0.00 4.20
280 281 1.228124 TGGCAGTTTCCCCTTGACG 60.228 57.895 0.00 0.00 0.00 4.35
281 282 1.527433 GCTGGCAGTTTCCCCTTGAC 61.527 60.000 17.16 0.00 0.00 3.18
282 283 1.228552 GCTGGCAGTTTCCCCTTGA 60.229 57.895 17.16 0.00 0.00 3.02
283 284 2.629656 CGCTGGCAGTTTCCCCTTG 61.630 63.158 17.16 0.00 0.00 3.61
284 285 2.282462 CGCTGGCAGTTTCCCCTT 60.282 61.111 17.16 0.00 0.00 3.95
285 286 2.829384 TTCGCTGGCAGTTTCCCCT 61.829 57.895 17.16 0.00 0.00 4.79
286 287 2.282180 TTCGCTGGCAGTTTCCCC 60.282 61.111 17.16 0.00 0.00 4.81
287 288 1.896660 TGTTCGCTGGCAGTTTCCC 60.897 57.895 17.16 0.00 0.00 3.97
288 289 1.282875 GTGTTCGCTGGCAGTTTCC 59.717 57.895 17.16 3.03 0.00 3.13
289 290 1.082756 CGTGTTCGCTGGCAGTTTC 60.083 57.895 17.16 5.39 0.00 2.78
290 291 3.022287 CGTGTTCGCTGGCAGTTT 58.978 55.556 17.16 0.00 0.00 2.66
300 301 2.388232 GGCAACTAGGGCGTGTTCG 61.388 63.158 0.00 0.00 40.37 3.95
301 302 1.302192 TGGCAACTAGGGCGTGTTC 60.302 57.895 0.00 0.00 35.84 3.18
302 303 1.599797 GTGGCAACTAGGGCGTGTT 60.600 57.895 0.00 0.00 35.84 3.32
303 304 2.032071 GTGGCAACTAGGGCGTGT 59.968 61.111 0.00 0.00 35.84 4.49
304 305 2.031919 TGTGGCAACTAGGGCGTG 59.968 61.111 0.00 0.00 35.84 5.34
305 306 2.032071 GTGTGGCAACTAGGGCGT 59.968 61.111 0.00 0.00 35.84 5.68
306 307 2.852495 ATCGTGTGGCAACTAGGGCG 62.852 60.000 0.00 0.00 35.84 6.13
307 308 1.078426 ATCGTGTGGCAACTAGGGC 60.078 57.895 0.00 0.00 37.61 5.19
308 309 0.537188 AGATCGTGTGGCAACTAGGG 59.463 55.000 0.00 0.00 37.61 3.53
309 310 2.002586 CAAGATCGTGTGGCAACTAGG 58.997 52.381 0.00 0.00 37.61 3.02
310 311 2.959516 TCAAGATCGTGTGGCAACTAG 58.040 47.619 8.54 0.00 37.61 2.57
311 312 3.521560 GATCAAGATCGTGTGGCAACTA 58.478 45.455 8.54 0.00 37.61 2.24
312 313 2.350522 GATCAAGATCGTGTGGCAACT 58.649 47.619 8.54 0.00 37.61 3.16
313 314 2.813779 GATCAAGATCGTGTGGCAAC 57.186 50.000 8.54 0.00 0.00 4.17
323 324 3.426695 CCAAAACTGCACCGATCAAGATC 60.427 47.826 0.00 0.00 34.56 2.75
324 325 2.489329 CCAAAACTGCACCGATCAAGAT 59.511 45.455 0.00 0.00 0.00 2.40
325 326 1.879380 CCAAAACTGCACCGATCAAGA 59.121 47.619 0.00 0.00 0.00 3.02
326 327 1.879380 TCCAAAACTGCACCGATCAAG 59.121 47.619 0.00 0.00 0.00 3.02
327 328 1.974265 TCCAAAACTGCACCGATCAA 58.026 45.000 0.00 0.00 0.00 2.57
328 329 1.811965 CATCCAAAACTGCACCGATCA 59.188 47.619 0.00 0.00 0.00 2.92
329 330 2.083774 TCATCCAAAACTGCACCGATC 58.916 47.619 0.00 0.00 0.00 3.69
330 331 2.198827 TCATCCAAAACTGCACCGAT 57.801 45.000 0.00 0.00 0.00 4.18
331 332 2.198827 ATCATCCAAAACTGCACCGA 57.801 45.000 0.00 0.00 0.00 4.69
332 333 3.302365 AAATCATCCAAAACTGCACCG 57.698 42.857 0.00 0.00 0.00 4.94
333 334 6.481644 TGTTAAAAATCATCCAAAACTGCACC 59.518 34.615 0.00 0.00 0.00 5.01
334 335 7.344441 GTGTTAAAAATCATCCAAAACTGCAC 58.656 34.615 0.00 0.00 0.00 4.57
335 336 6.199908 CGTGTTAAAAATCATCCAAAACTGCA 59.800 34.615 0.00 0.00 0.00 4.41
336 337 6.580476 CGTGTTAAAAATCATCCAAAACTGC 58.420 36.000 0.00 0.00 0.00 4.40
337 338 6.199908 TGCGTGTTAAAAATCATCCAAAACTG 59.800 34.615 0.00 0.00 0.00 3.16
338 339 6.276847 TGCGTGTTAAAAATCATCCAAAACT 58.723 32.000 0.00 0.00 0.00 2.66
339 340 6.517914 TGCGTGTTAAAAATCATCCAAAAC 57.482 33.333 0.00 0.00 0.00 2.43
340 341 7.278868 ACTTTGCGTGTTAAAAATCATCCAAAA 59.721 29.630 0.00 0.00 0.00 2.44
341 342 6.758886 ACTTTGCGTGTTAAAAATCATCCAAA 59.241 30.769 0.00 0.00 0.00 3.28
342 343 6.276847 ACTTTGCGTGTTAAAAATCATCCAA 58.723 32.000 0.00 0.00 0.00 3.53
343 344 5.837437 ACTTTGCGTGTTAAAAATCATCCA 58.163 33.333 0.00 0.00 0.00 3.41
344 345 6.763303 AACTTTGCGTGTTAAAAATCATCC 57.237 33.333 0.00 0.00 0.00 3.51
345 346 9.562752 GTTTAACTTTGCGTGTTAAAAATCATC 57.437 29.630 17.10 6.26 45.42 2.92
346 347 9.088512 TGTTTAACTTTGCGTGTTAAAAATCAT 57.911 25.926 17.10 0.00 45.42 2.45
347 348 8.462143 TGTTTAACTTTGCGTGTTAAAAATCA 57.538 26.923 17.10 11.51 45.42 2.57
348 349 9.742552 TTTGTTTAACTTTGCGTGTTAAAAATC 57.257 25.926 17.10 9.86 45.42 2.17
350 351 9.530129 CATTTGTTTAACTTTGCGTGTTAAAAA 57.470 25.926 17.10 12.29 45.42 1.94
351 352 7.688578 GCATTTGTTTAACTTTGCGTGTTAAAA 59.311 29.630 17.10 7.87 45.42 1.52
352 353 7.174082 GCATTTGTTTAACTTTGCGTGTTAAA 58.826 30.769 13.65 13.65 43.33 1.52
353 354 6.237861 GGCATTTGTTTAACTTTGCGTGTTAA 60.238 34.615 0.00 5.14 37.88 2.01
354 355 5.232414 GGCATTTGTTTAACTTTGCGTGTTA 59.768 36.000 0.00 0.00 0.00 2.41
355 356 4.033472 GGCATTTGTTTAACTTTGCGTGTT 59.967 37.500 0.00 0.00 0.00 3.32
356 357 3.553917 GGCATTTGTTTAACTTTGCGTGT 59.446 39.130 0.00 0.00 0.00 4.49
357 358 3.553511 TGGCATTTGTTTAACTTTGCGTG 59.446 39.130 0.00 0.00 0.00 5.34
358 359 3.786635 TGGCATTTGTTTAACTTTGCGT 58.213 36.364 0.00 0.00 0.00 5.24
359 360 4.210955 ACATGGCATTTGTTTAACTTTGCG 59.789 37.500 0.00 0.00 0.00 4.85
360 361 5.236047 TGACATGGCATTTGTTTAACTTTGC 59.764 36.000 0.00 3.19 0.00 3.68
361 362 6.479660 ACTGACATGGCATTTGTTTAACTTTG 59.520 34.615 0.00 0.00 0.00 2.77
362 363 6.581712 ACTGACATGGCATTTGTTTAACTTT 58.418 32.000 0.00 0.00 0.00 2.66
363 364 6.160576 ACTGACATGGCATTTGTTTAACTT 57.839 33.333 0.00 0.00 0.00 2.66
364 365 5.789643 ACTGACATGGCATTTGTTTAACT 57.210 34.783 0.00 0.00 0.00 2.24
365 366 6.843069 AAACTGACATGGCATTTGTTTAAC 57.157 33.333 14.03 0.00 0.00 2.01
366 367 6.238320 GCAAAACTGACATGGCATTTGTTTAA 60.238 34.615 22.58 0.00 32.03 1.52
367 368 5.236047 GCAAAACTGACATGGCATTTGTTTA 59.764 36.000 22.58 0.00 32.03 2.01
368 369 4.035441 GCAAAACTGACATGGCATTTGTTT 59.965 37.500 22.58 17.16 32.03 2.83
369 370 3.560896 GCAAAACTGACATGGCATTTGTT 59.439 39.130 22.58 12.79 32.03 2.83
370 371 3.132925 GCAAAACTGACATGGCATTTGT 58.867 40.909 22.58 8.74 32.03 2.83
371 372 3.132160 TGCAAAACTGACATGGCATTTG 58.868 40.909 19.21 19.21 0.00 2.32
372 373 3.472283 TGCAAAACTGACATGGCATTT 57.528 38.095 0.00 0.00 0.00 2.32
373 374 3.132925 GTTGCAAAACTGACATGGCATT 58.867 40.909 0.00 0.00 0.00 3.56
374 375 2.548493 GGTTGCAAAACTGACATGGCAT 60.548 45.455 0.00 0.00 0.00 4.40
375 376 1.202510 GGTTGCAAAACTGACATGGCA 60.203 47.619 0.00 0.00 0.00 4.92
376 377 1.202510 TGGTTGCAAAACTGACATGGC 60.203 47.619 0.00 0.00 32.01 4.40
377 378 2.886862 TGGTTGCAAAACTGACATGG 57.113 45.000 0.00 0.00 32.01 3.66
378 379 5.542616 TTTTTGGTTGCAAAACTGACATG 57.457 34.783 0.00 0.00 32.01 3.21
401 402 2.529632 GGAGAACCTGGATGGCTTTTT 58.470 47.619 0.00 0.00 40.22 1.94
402 403 1.614317 CGGAGAACCTGGATGGCTTTT 60.614 52.381 0.00 0.00 40.22 2.27
403 404 0.035056 CGGAGAACCTGGATGGCTTT 60.035 55.000 0.00 0.00 40.22 3.51
404 405 0.909610 TCGGAGAACCTGGATGGCTT 60.910 55.000 0.00 0.00 40.22 4.35
405 406 0.909610 TTCGGAGAACCTGGATGGCT 60.910 55.000 0.00 0.00 45.90 4.75
406 407 0.181350 ATTCGGAGAACCTGGATGGC 59.819 55.000 0.00 0.00 45.90 4.40
407 408 1.959042 CATTCGGAGAACCTGGATGG 58.041 55.000 0.00 0.00 45.90 3.51
408 409 1.303309 GCATTCGGAGAACCTGGATG 58.697 55.000 0.00 0.00 45.90 3.51
409 410 0.179073 CGCATTCGGAGAACCTGGAT 60.179 55.000 0.00 0.00 45.90 3.41
410 411 1.218047 CGCATTCGGAGAACCTGGA 59.782 57.895 0.00 0.00 45.90 3.86
411 412 0.673644 AACGCATTCGGAGAACCTGG 60.674 55.000 0.00 0.00 45.90 4.45
412 413 0.443869 CAACGCATTCGGAGAACCTG 59.556 55.000 0.00 0.00 45.90 4.00
413 414 0.320374 TCAACGCATTCGGAGAACCT 59.680 50.000 0.00 0.00 45.90 3.50
414 415 1.153353 TTCAACGCATTCGGAGAACC 58.847 50.000 0.00 0.00 45.90 3.62
415 416 2.961522 TTTCAACGCATTCGGAGAAC 57.038 45.000 0.00 0.00 45.90 3.01
416 417 2.875933 AGTTTTCAACGCATTCGGAGAA 59.124 40.909 0.00 0.00 38.04 2.87
417 418 2.223144 CAGTTTTCAACGCATTCGGAGA 59.777 45.455 0.00 0.00 40.69 3.71
418 419 2.574322 CAGTTTTCAACGCATTCGGAG 58.426 47.619 0.00 0.00 40.69 4.63
419 420 1.334599 GCAGTTTTCAACGCATTCGGA 60.335 47.619 0.00 0.00 40.69 4.55
420 421 1.052287 GCAGTTTTCAACGCATTCGG 58.948 50.000 0.00 0.00 40.69 4.30
421 422 0.697010 CGCAGTTTTCAACGCATTCG 59.303 50.000 0.00 0.00 42.43 3.34
422 423 1.447938 CACGCAGTTTTCAACGCATTC 59.552 47.619 0.00 0.00 41.61 2.67
423 424 1.064803 TCACGCAGTTTTCAACGCATT 59.935 42.857 0.00 0.00 41.61 3.56
424 425 0.660488 TCACGCAGTTTTCAACGCAT 59.340 45.000 0.00 0.00 41.61 4.73
425 426 0.660488 ATCACGCAGTTTTCAACGCA 59.340 45.000 0.00 0.00 41.61 5.24
426 427 1.044725 CATCACGCAGTTTTCAACGC 58.955 50.000 0.00 0.00 41.61 4.84
427 428 2.661504 TCATCACGCAGTTTTCAACG 57.338 45.000 0.00 0.00 41.61 4.10
428 429 2.713976 CGTTCATCACGCAGTTTTCAAC 59.286 45.455 0.00 0.00 41.61 3.18
429 430 2.980586 CGTTCATCACGCAGTTTTCAA 58.019 42.857 0.00 0.00 41.61 2.69
430 431 2.661504 CGTTCATCACGCAGTTTTCA 57.338 45.000 0.00 0.00 41.61 2.69
440 441 2.159653 GGCATCTGTGAACGTTCATCAC 60.160 50.000 31.81 21.16 45.82 3.06
441 442 2.076100 GGCATCTGTGAACGTTCATCA 58.924 47.619 31.81 26.56 39.73 3.07
442 443 2.076100 TGGCATCTGTGAACGTTCATC 58.924 47.619 31.81 23.94 39.73 2.92
443 444 2.183478 TGGCATCTGTGAACGTTCAT 57.817 45.000 31.81 14.90 39.73 2.57
444 445 2.183478 ATGGCATCTGTGAACGTTCA 57.817 45.000 26.53 26.53 34.20 3.18
445 446 3.492313 GAAATGGCATCTGTGAACGTTC 58.508 45.455 21.42 21.42 0.00 3.95
446 447 2.228822 GGAAATGGCATCTGTGAACGTT 59.771 45.455 0.00 0.00 0.00 3.99
447 448 1.812571 GGAAATGGCATCTGTGAACGT 59.187 47.619 0.00 0.00 0.00 3.99
448 449 2.086869 AGGAAATGGCATCTGTGAACG 58.913 47.619 0.00 0.00 0.00 3.95
449 450 4.037208 CCATAGGAAATGGCATCTGTGAAC 59.963 45.833 11.39 0.00 31.75 3.18
450 451 4.209538 CCATAGGAAATGGCATCTGTGAA 58.790 43.478 11.39 0.00 31.75 3.18
451 452 3.824133 CCATAGGAAATGGCATCTGTGA 58.176 45.455 11.39 0.00 31.75 3.58
460 461 1.597663 GACGTTCGCCATAGGAAATGG 59.402 52.381 0.00 0.00 41.99 3.16
461 462 1.597663 GGACGTTCGCCATAGGAAATG 59.402 52.381 0.00 0.00 0.00 2.32
462 463 1.805120 CGGACGTTCGCCATAGGAAAT 60.805 52.381 1.83 0.00 0.00 2.17
463 464 0.458889 CGGACGTTCGCCATAGGAAA 60.459 55.000 1.83 0.00 0.00 3.13
464 465 1.140161 CGGACGTTCGCCATAGGAA 59.860 57.895 1.83 0.00 0.00 3.36
465 466 2.802792 CGGACGTTCGCCATAGGA 59.197 61.111 1.83 0.00 0.00 2.94
473 474 2.014554 CATATCCGGCGGACGTTCG 61.015 63.158 33.71 13.13 42.24 3.95
474 475 1.663702 CCATATCCGGCGGACGTTC 60.664 63.158 33.71 0.00 42.24 3.95
475 476 2.420043 CCATATCCGGCGGACGTT 59.580 61.111 33.71 18.92 42.24 3.99
476 477 4.295119 GCCATATCCGGCGGACGT 62.295 66.667 33.71 19.76 43.52 4.34
485 486 5.357032 CCGTAAATAAAGGATGGCCATATCC 59.643 44.000 20.84 18.38 45.71 2.59
486 487 5.163652 GCCGTAAATAAAGGATGGCCATATC 60.164 44.000 20.84 14.29 39.02 1.63
487 488 4.705023 GCCGTAAATAAAGGATGGCCATAT 59.295 41.667 20.84 7.79 39.02 1.78
488 489 4.076394 GCCGTAAATAAAGGATGGCCATA 58.924 43.478 20.84 2.08 39.02 2.74
489 490 2.890945 GCCGTAAATAAAGGATGGCCAT 59.109 45.455 20.96 20.96 39.02 4.40
490 491 2.303175 GCCGTAAATAAAGGATGGCCA 58.697 47.619 8.56 8.56 39.02 5.36
492 493 1.611977 GGGCCGTAAATAAAGGATGGC 59.388 52.381 0.00 0.00 43.36 4.40
493 494 2.235891 GGGGCCGTAAATAAAGGATGG 58.764 52.381 0.00 0.00 0.00 3.51
494 495 1.877443 CGGGGCCGTAAATAAAGGATG 59.123 52.381 0.00 0.00 34.35 3.51
495 496 1.816572 GCGGGGCCGTAAATAAAGGAT 60.817 52.381 0.00 0.00 42.09 3.24
496 497 0.464193 GCGGGGCCGTAAATAAAGGA 60.464 55.000 0.00 0.00 42.09 3.36
497 498 0.748729 TGCGGGGCCGTAAATAAAGG 60.749 55.000 0.00 0.00 42.09 3.11
498 499 1.096416 TTGCGGGGCCGTAAATAAAG 58.904 50.000 0.00 0.00 40.68 1.85
499 500 0.810016 GTTGCGGGGCCGTAAATAAA 59.190 50.000 0.00 0.00 44.58 1.40
500 501 0.322277 TGTTGCGGGGCCGTAAATAA 60.322 50.000 0.00 0.00 44.58 1.40
501 502 0.745128 CTGTTGCGGGGCCGTAAATA 60.745 55.000 0.00 0.00 44.58 1.40
502 503 2.034376 TGTTGCGGGGCCGTAAAT 59.966 55.556 0.00 0.00 44.58 1.40
503 504 2.670251 CTGTTGCGGGGCCGTAAA 60.670 61.111 0.00 0.00 44.58 2.01
551 552 3.432051 CTGTCCCTCCGACGATGGC 62.432 68.421 0.00 0.00 45.23 4.40
565 566 0.822121 AAAGGTTTCGCCACCCTGTC 60.822 55.000 0.00 0.00 40.61 3.51
566 567 0.475044 TAAAGGTTTCGCCACCCTGT 59.525 50.000 0.00 0.00 40.61 4.00
567 568 0.879090 GTAAAGGTTTCGCCACCCTG 59.121 55.000 0.00 0.00 40.61 4.45
627 628 3.462021 GTGAGCTCTCTCTCTCTCTCTC 58.538 54.545 16.19 0.00 40.03 3.20
628 629 2.159043 CGTGAGCTCTCTCTCTCTCTCT 60.159 54.545 16.19 0.00 40.03 3.10
629 630 2.205074 CGTGAGCTCTCTCTCTCTCTC 58.795 57.143 16.19 0.00 40.03 3.20
725 982 3.453988 CTCGAGGGAGGAGGATGC 58.546 66.667 3.91 0.00 36.61 3.91
824 1081 1.227089 CAATGCCGGTCCTCTCTCG 60.227 63.158 1.90 0.00 0.00 4.04
985 1312 4.899239 CATCTCAGACCGCCCCGC 62.899 72.222 0.00 0.00 0.00 6.13
986 1313 4.227134 CCATCTCAGACCGCCCCG 62.227 72.222 0.00 0.00 0.00 5.73
987 1314 2.764128 TCCATCTCAGACCGCCCC 60.764 66.667 0.00 0.00 0.00 5.80
988 1315 2.801631 CCTCCATCTCAGACCGCCC 61.802 68.421 0.00 0.00 0.00 6.13
989 1316 1.758514 TCCTCCATCTCAGACCGCC 60.759 63.158 0.00 0.00 0.00 6.13
990 1317 1.439644 GTCCTCCATCTCAGACCGC 59.560 63.158 0.00 0.00 0.00 5.68
991 1318 2.119886 GGTCCTCCATCTCAGACCG 58.880 63.158 0.00 0.00 39.47 4.79
1056 1383 2.115343 AGAAAAGGATTCGTGGGAGC 57.885 50.000 0.00 0.00 0.00 4.70
1079 1406 4.020543 CCAGAAACCCGGGAAATTAATGA 58.979 43.478 32.02 0.00 31.13 2.57
1080 1407 3.132111 CCCAGAAACCCGGGAAATTAATG 59.868 47.826 32.02 18.62 46.34 1.90
1081 1408 3.371034 CCCAGAAACCCGGGAAATTAAT 58.629 45.455 32.02 0.00 46.34 1.40
1098 1425 2.190578 GGGTGATTCGCCTCCCAG 59.809 66.667 15.60 0.00 39.16 4.45
1103 1430 2.283529 ACAGACGGGTGATTCGCCT 61.284 57.895 15.60 0.00 33.98 5.52
1104 1431 2.100631 CACAGACGGGTGATTCGCC 61.101 63.158 7.78 7.78 41.32 5.54
1105 1432 1.374252 ACACAGACGGGTGATTCGC 60.374 57.895 10.50 0.00 41.32 4.70
1208 1539 1.663695 ATCGACCCAAAATACAGCCG 58.336 50.000 0.00 0.00 0.00 5.52
1250 1591 2.489938 ATCAAGCTTACCGAGGCAAA 57.510 45.000 0.00 0.00 0.00 3.68
1257 1598 2.094752 CACCCCAAAATCAAGCTTACCG 60.095 50.000 0.00 0.00 0.00 4.02
1258 1599 2.353704 GCACCCCAAAATCAAGCTTACC 60.354 50.000 0.00 0.00 0.00 2.85
1354 1698 2.672996 AACATCCACCGCAGCCAC 60.673 61.111 0.00 0.00 0.00 5.01
1355 1699 2.672651 CAACATCCACCGCAGCCA 60.673 61.111 0.00 0.00 0.00 4.75
1356 1700 3.443045 CCAACATCCACCGCAGCC 61.443 66.667 0.00 0.00 0.00 4.85
1392 1754 6.044682 GCCAAATAATGAGATCCCAAACTTG 58.955 40.000 0.00 0.00 0.00 3.16
1394 1756 5.522641 AGCCAAATAATGAGATCCCAAACT 58.477 37.500 0.00 0.00 0.00 2.66
1395 1757 5.859205 AGCCAAATAATGAGATCCCAAAC 57.141 39.130 0.00 0.00 0.00 2.93
1396 1758 5.957168 TGAAGCCAAATAATGAGATCCCAAA 59.043 36.000 0.00 0.00 0.00 3.28
1397 1759 5.517924 TGAAGCCAAATAATGAGATCCCAA 58.482 37.500 0.00 0.00 0.00 4.12
1398 1760 5.128033 TGAAGCCAAATAATGAGATCCCA 57.872 39.130 0.00 0.00 0.00 4.37
1469 1851 1.195442 TACATTCCGCTCCACCCACA 61.195 55.000 0.00 0.00 0.00 4.17
1516 1899 8.660435 TCCTTTCCCATATAGAGAATAAACTGG 58.340 37.037 0.00 0.00 0.00 4.00
1547 1930 8.977412 TCTTAGTCTCATGTCACCAACATTATA 58.023 33.333 0.00 0.00 46.73 0.98
1561 1944 1.914051 CACACGCGTCTTAGTCTCATG 59.086 52.381 9.86 0.00 0.00 3.07
1563 1946 1.197036 CTCACACGCGTCTTAGTCTCA 59.803 52.381 9.86 0.00 0.00 3.27
1564 1947 1.466024 CCTCACACGCGTCTTAGTCTC 60.466 57.143 9.86 0.00 0.00 3.36
1639 2023 7.615365 TGATTATGTGGGAGAAGCACTAAAATT 59.385 33.333 0.00 0.00 0.00 1.82
1744 2128 4.765856 TCCTTCAGTAGTGAACAGAGGTAC 59.234 45.833 8.98 0.00 37.79 3.34
1760 2149 1.308998 ACTGCCAAAACGTCCTTCAG 58.691 50.000 0.00 0.00 0.00 3.02
1830 2219 6.701400 ACATGCATTAACAAGAGGAAACAAAC 59.299 34.615 0.00 0.00 0.00 2.93
1893 2288 0.990374 AAGAAGCCTGAGGAGTGCAT 59.010 50.000 0.65 0.00 0.00 3.96
1981 2376 1.956629 TAGTGAGGGTGCGCTTAGGC 61.957 60.000 9.73 0.00 0.00 3.93
2037 2432 5.627499 TTTTCCACACAGATAGCACATTC 57.373 39.130 0.00 0.00 0.00 2.67
2101 2496 7.444183 CAGAAAAACATGTCCTGGACTAGTTTA 59.556 37.037 31.16 14.76 38.32 2.01
2116 2511 4.914312 ATCATTTGCGCAGAAAAACATG 57.086 36.364 11.31 0.00 0.00 3.21
2128 2523 8.397906 TCCTAGAATTTACTGAAATCATTTGCG 58.602 33.333 0.00 0.00 34.01 4.85
2138 2533 6.721318 AGCATGGTTCCTAGAATTTACTGAA 58.279 36.000 0.00 0.00 0.00 3.02
2169 2564 7.547722 CGATCACCATATTACCGAATTCCAATA 59.452 37.037 0.00 2.57 0.00 1.90
2193 2588 3.713826 AGAAAAATTAGGTGAGGCCGA 57.286 42.857 0.00 0.00 43.70 5.54
2201 2596 7.384932 GTGCAATGCAACTTAGAAAAATTAGGT 59.615 33.333 10.44 0.00 41.47 3.08
2248 2643 7.186570 TGTCTCCAGAAGATACATTCAATCA 57.813 36.000 0.00 0.00 36.11 2.57
2370 2765 7.692460 TGCCATTAGAAAGCTATGATTATGG 57.308 36.000 8.52 8.52 34.93 2.74
2541 2936 3.372206 ACTGACAGATGAAATACTTGCGC 59.628 43.478 10.08 0.00 0.00 6.09
2734 3129 3.978460 TGCGTCAGTTGCAGAGTTA 57.022 47.368 0.00 0.00 37.44 2.24
2839 3234 2.564771 CGGCTCATTGCAGGAATAGAA 58.435 47.619 0.00 0.00 45.15 2.10
3382 3777 3.562182 CTTTGTCCTTAGGTTTGGTGGT 58.438 45.455 0.00 0.00 0.00 4.16
3442 3837 4.860802 TCTTATTCCTGAAGCCATTCCA 57.139 40.909 0.00 0.00 34.28 3.53
3547 3942 0.749454 GCGCCTTTGATGGTGGATCT 60.749 55.000 0.00 0.00 38.01 2.75
3577 3972 3.511146 ACTGCCTATTTTGGTGTCCATTG 59.489 43.478 0.00 0.00 31.53 2.82
3608 4003 0.307760 GCTTGACTGTCAACAACGGG 59.692 55.000 18.69 9.56 38.70 5.28
3673 4068 5.048083 TGAATTCTTTGAAATTGTCCTCCCG 60.048 40.000 7.05 0.00 0.00 5.14
3776 4171 5.918011 CAGTAACAAAACCGTAATGCAACAT 59.082 36.000 0.00 0.00 0.00 2.71
3857 4255 7.722285 ACCACTGTAACTTAAATGCTAAAAGGA 59.278 33.333 0.00 0.00 0.00 3.36
3900 4298 5.126061 CCTTGTAATGTTGCATAAAGAGGCT 59.874 40.000 0.00 0.00 32.18 4.58
3903 4301 5.105797 TGGCCTTGTAATGTTGCATAAAGAG 60.106 40.000 3.32 0.00 0.00 2.85
3937 4335 5.858581 CGATGACTTTTCCACCTTGAAAATC 59.141 40.000 0.00 0.00 41.83 2.17
3995 4393 2.289820 GTCAACTTTTCAACTCCGGTCC 59.710 50.000 0.00 0.00 0.00 4.46
4244 4669 7.725251 TCAACAGAATAAAACAATCAAAGGCT 58.275 30.769 0.00 0.00 0.00 4.58
4280 4707 8.696302 CCTATCAAAAGGAAGTACACTGGTGTG 61.696 44.444 15.57 2.70 43.34 3.82
4386 4814 1.153628 GTCAGACATTCGGACCGGG 60.154 63.158 15.25 6.81 35.92 5.73
4512 4940 3.444805 GAGTCCGTCGAGCTGCCT 61.445 66.667 0.00 0.00 0.00 4.75
4536 4964 3.387947 GTCCCGAAGCTTCCCCGA 61.388 66.667 20.62 10.37 0.00 5.14
4620 5048 2.678934 TTCCTCACGTCCTCCCCG 60.679 66.667 0.00 0.00 0.00 5.73
4786 5214 1.743772 CGTGGGGAATCAGGTGATCAC 60.744 57.143 17.91 17.91 32.75 3.06
4787 5215 0.541392 CGTGGGGAATCAGGTGATCA 59.459 55.000 0.00 0.00 32.75 2.92
4789 5217 0.991920 AACGTGGGGAATCAGGTGAT 59.008 50.000 0.00 0.00 36.13 3.06
4790 5218 0.323629 GAACGTGGGGAATCAGGTGA 59.676 55.000 0.00 0.00 36.13 4.02
4791 5219 0.676782 GGAACGTGGGGAATCAGGTG 60.677 60.000 0.00 0.00 36.13 4.00
4792 5220 0.840722 AGGAACGTGGGGAATCAGGT 60.841 55.000 0.00 0.00 37.35 4.00
4794 5222 1.739067 GAAGGAACGTGGGGAATCAG 58.261 55.000 0.00 0.00 0.00 2.90
4795 5223 0.036765 CGAAGGAACGTGGGGAATCA 60.037 55.000 0.00 0.00 0.00 2.57
4796 5224 0.036671 ACGAAGGAACGTGGGGAATC 60.037 55.000 0.00 0.00 44.84 2.52
4797 5225 2.063774 ACGAAGGAACGTGGGGAAT 58.936 52.632 0.00 0.00 44.84 3.01
4807 5236 1.454201 TGCAACACAACACGAAGGAA 58.546 45.000 0.00 0.00 0.00 3.36
4816 5245 4.552166 ACTACACATCTTGCAACACAAC 57.448 40.909 0.00 0.00 33.68 3.32
4824 5253 4.452455 GGGCATACATACTACACATCTTGC 59.548 45.833 0.00 0.00 0.00 4.01
4850 5282 1.318576 CCTATCCATTTCGGCCCAAC 58.681 55.000 0.00 0.00 33.14 3.77
4851 5283 0.184933 CCCTATCCATTTCGGCCCAA 59.815 55.000 0.00 0.00 33.14 4.12
4852 5284 1.843421 CCCTATCCATTTCGGCCCA 59.157 57.895 0.00 0.00 33.14 5.36
4853 5285 1.603739 GCCCTATCCATTTCGGCCC 60.604 63.158 0.00 0.00 33.30 5.80
4854 5286 0.606673 GAGCCCTATCCATTTCGGCC 60.607 60.000 0.00 0.00 40.65 6.13
4866 5357 0.544833 TACACAAACCCGGAGCCCTA 60.545 55.000 0.73 0.00 0.00 3.53
4867 5358 1.420532 TTACACAAACCCGGAGCCCT 61.421 55.000 0.73 0.00 0.00 5.19
4868 5359 1.073548 TTACACAAACCCGGAGCCC 59.926 57.895 0.73 0.00 0.00 5.19
5037 5539 0.242825 GTGAGATGGTCCAACGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
5038 5540 1.071019 CGTGAGATGGTCCAACGTCG 61.071 60.000 0.00 0.00 0.00 5.12
5039 5541 1.352156 GCGTGAGATGGTCCAACGTC 61.352 60.000 13.81 4.11 0.00 4.34
5042 5544 1.639298 GCTGCGTGAGATGGTCCAAC 61.639 60.000 0.00 0.00 0.00 3.77
5059 5561 3.984193 GATTGGGAGTGCAGCGGCT 62.984 63.158 10.92 0.00 41.91 5.52
5086 5597 2.143122 GCTTCCGACTTGTGTGATCAA 58.857 47.619 0.00 0.00 0.00 2.57
5148 5700 0.179062 CTCCACCAGCAGCATCTACC 60.179 60.000 0.00 0.00 0.00 3.18
5149 5701 0.179062 CCTCCACCAGCAGCATCTAC 60.179 60.000 0.00 0.00 0.00 2.59
5150 5702 0.325577 TCCTCCACCAGCAGCATCTA 60.326 55.000 0.00 0.00 0.00 1.98
5151 5703 1.614525 TCCTCCACCAGCAGCATCT 60.615 57.895 0.00 0.00 0.00 2.90
5152 5704 1.153208 CTCCTCCACCAGCAGCATC 60.153 63.158 0.00 0.00 0.00 3.91
5155 5707 1.548357 TTCTCTCCTCCACCAGCAGC 61.548 60.000 0.00 0.00 0.00 5.25
5156 5708 0.536260 CTTCTCTCCTCCACCAGCAG 59.464 60.000 0.00 0.00 0.00 4.24
5157 5709 0.906756 CCTTCTCTCCTCCACCAGCA 60.907 60.000 0.00 0.00 0.00 4.41
5158 5710 0.616111 TCCTTCTCTCCTCCACCAGC 60.616 60.000 0.00 0.00 0.00 4.85
5159 5711 1.761784 CATCCTTCTCTCCTCCACCAG 59.238 57.143 0.00 0.00 0.00 4.00
5160 5712 1.623557 CCATCCTTCTCTCCTCCACCA 60.624 57.143 0.00 0.00 0.00 4.17
5161 5713 1.127343 CCATCCTTCTCTCCTCCACC 58.873 60.000 0.00 0.00 0.00 4.61
5167 5719 0.462759 CGCCAACCATCCTTCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
5244 5799 2.740055 GATCCGGCCAGCATAGCG 60.740 66.667 2.24 0.00 0.00 4.26
5473 6061 2.747686 GTGGGTTGCCTTCGGAGA 59.252 61.111 0.00 0.00 0.00 3.71
5557 6147 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
5558 6148 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
5559 6149 1.438651 AGTCACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
5561 6151 3.058570 TGAAAAGTCACACACACACACAC 60.059 43.478 0.00 0.00 0.00 3.82
5563 6153 3.822594 TGAAAAGTCACACACACACAC 57.177 42.857 0.00 0.00 0.00 3.82
5663 6253 1.203052 CCATGGTCATGCAAAGACACC 59.797 52.381 20.12 9.62 37.74 4.16
5679 6269 0.533491 CAAAGACACCATGGCCCATG 59.467 55.000 17.16 17.16 41.10 3.66
5680 6270 1.259840 GCAAAGACACCATGGCCCAT 61.260 55.000 13.04 0.00 0.00 4.00
5681 6271 1.907807 GCAAAGACACCATGGCCCA 60.908 57.895 13.04 0.00 0.00 5.36
5682 6272 1.259840 ATGCAAAGACACCATGGCCC 61.260 55.000 13.04 0.50 0.00 5.80
5683 6273 0.174162 GATGCAAAGACACCATGGCC 59.826 55.000 13.04 0.00 0.00 5.36
5684 6274 0.179156 CGATGCAAAGACACCATGGC 60.179 55.000 13.04 0.00 0.00 4.40
5685 6275 1.452110 TCGATGCAAAGACACCATGG 58.548 50.000 11.19 11.19 0.00 3.66
5686 6276 2.286008 CGATCGATGCAAAGACACCATG 60.286 50.000 10.26 0.00 0.00 3.66
5689 6279 1.590238 CTCGATCGATGCAAAGACACC 59.410 52.381 19.78 0.00 0.00 4.16
5702 6292 6.782298 TTACATCTCTAGTTACCTCGATCG 57.218 41.667 9.36 9.36 0.00 3.69
5703 6293 8.156994 ACTTTACATCTCTAGTTACCTCGATC 57.843 38.462 0.00 0.00 0.00 3.69
5704 6294 9.054922 GTACTTTACATCTCTAGTTACCTCGAT 57.945 37.037 0.00 0.00 0.00 3.59
5705 6295 8.263640 AGTACTTTACATCTCTAGTTACCTCGA 58.736 37.037 0.00 0.00 0.00 4.04
5706 6296 8.436046 AGTACTTTACATCTCTAGTTACCTCG 57.564 38.462 0.00 0.00 0.00 4.63
5707 6297 8.839343 GGAGTACTTTACATCTCTAGTTACCTC 58.161 40.741 0.00 0.00 0.00 3.85
5708 6298 8.559175 AGGAGTACTTTACATCTCTAGTTACCT 58.441 37.037 0.00 0.00 0.00 3.08
5709 6299 8.750515 AGGAGTACTTTACATCTCTAGTTACC 57.249 38.462 0.00 0.00 0.00 2.85
5711 6301 9.406113 GGAAGGAGTACTTTACATCTCTAGTTA 57.594 37.037 0.00 0.00 40.21 2.24
5712 6302 7.067251 CGGAAGGAGTACTTTACATCTCTAGTT 59.933 40.741 0.00 0.00 40.21 2.24
5713 6303 6.543100 CGGAAGGAGTACTTTACATCTCTAGT 59.457 42.308 0.00 0.00 40.21 2.57
5714 6304 6.543100 ACGGAAGGAGTACTTTACATCTCTAG 59.457 42.308 0.00 0.00 40.21 2.43
5715 6305 6.421485 ACGGAAGGAGTACTTTACATCTCTA 58.579 40.000 0.00 0.00 40.21 2.43
5716 6306 5.262804 ACGGAAGGAGTACTTTACATCTCT 58.737 41.667 0.00 0.00 40.21 3.10
5717 6307 5.579564 ACGGAAGGAGTACTTTACATCTC 57.420 43.478 0.00 0.00 40.21 2.75
5718 6308 5.579564 GACGGAAGGAGTACTTTACATCT 57.420 43.478 0.00 0.00 40.21 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.