Multiple sequence alignment - TraesCS1A01G301300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G301300 chr1A 100.000 3415 0 0 1 3415 495697869 495694455 0.000000e+00 6307
1 TraesCS1A01G301300 chr1B 93.341 1817 101 9 669 2481 534661962 534660162 0.000000e+00 2667
2 TraesCS1A01G301300 chr1B 85.673 691 76 7 2728 3415 534643307 534642637 0.000000e+00 706
3 TraesCS1A01G301300 chr1B 86.636 434 28 11 62 486 534662505 534662093 1.440000e-123 453
4 TraesCS1A01G301300 chr1D 91.598 1702 109 15 803 2496 398971195 398969520 0.000000e+00 2320
5 TraesCS1A01G301300 chr1D 88.046 870 77 18 2511 3375 398969537 398968690 0.000000e+00 1005
6 TraesCS1A01G301300 chr1D 87.129 505 34 19 62 539 398972299 398971799 8.330000e-151 544
7 TraesCS1A01G301300 chr6D 82.474 291 40 8 2657 2944 414269872 414269590 9.470000e-61 244
8 TraesCS1A01G301300 chr6A 82.353 289 42 8 2658 2944 434774970 434775251 3.400000e-60 243
9 TraesCS1A01G301300 chr6A 81.100 291 43 10 2658 2944 69007957 69008239 4.440000e-54 222
10 TraesCS1A01G301300 chr5A 82.168 286 40 8 2651 2934 321925055 321924779 5.700000e-58 235
11 TraesCS1A01G301300 chr3A 81.724 290 43 7 2658 2944 361786244 361786526 2.050000e-57 233
12 TraesCS1A01G301300 chr3D 81.229 293 46 7 2655 2944 537921785 537921499 9.530000e-56 228
13 TraesCS1A01G301300 chr2A 80.201 298 47 9 2651 2944 19230310 19230599 2.670000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G301300 chr1A 495694455 495697869 3414 True 6307.000000 6307 100.000000 1 3415 1 chr1A.!!$R1 3414
1 TraesCS1A01G301300 chr1B 534660162 534662505 2343 True 1560.000000 2667 89.988500 62 2481 2 chr1B.!!$R2 2419
2 TraesCS1A01G301300 chr1B 534642637 534643307 670 True 706.000000 706 85.673000 2728 3415 1 chr1B.!!$R1 687
3 TraesCS1A01G301300 chr1D 398968690 398972299 3609 True 1289.666667 2320 88.924333 62 3375 3 chr1D.!!$R1 3313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.185175 AAAAACCTCCCCTTGCGAGT 59.815 50.0 0.0 0.0 0.0 4.18 F
1388 1830 0.037232 GCGGCTACAACTCCAACTCT 60.037 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 2079 0.109689 GGACAGAGAAGTCACGTCGG 60.11 60.0 0.00 0.0 40.29 4.79 R
2595 3040 0.039617 TTTTCACGCGCCATCCAAAG 60.04 50.0 5.73 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.036431 AAAAACCTCCCCTTGCGAG 57.964 52.632 0.00 0.00 0.00 5.03
37 38 0.185175 AAAAACCTCCCCTTGCGAGT 59.815 50.000 0.00 0.00 0.00 4.18
38 39 0.185175 AAAACCTCCCCTTGCGAGTT 59.815 50.000 0.00 0.00 0.00 3.01
39 40 0.537371 AAACCTCCCCTTGCGAGTTG 60.537 55.000 0.00 0.00 0.00 3.16
40 41 2.747855 CCTCCCCTTGCGAGTTGC 60.748 66.667 0.00 0.00 46.70 4.17
49 50 3.876300 GCGAGTTGCGATTGGACT 58.124 55.556 0.00 0.00 44.57 3.85
50 51 2.162716 GCGAGTTGCGATTGGACTT 58.837 52.632 0.00 0.00 44.57 3.01
51 52 0.517316 GCGAGTTGCGATTGGACTTT 59.483 50.000 0.00 0.00 44.57 2.66
52 53 1.069227 GCGAGTTGCGATTGGACTTTT 60.069 47.619 0.00 0.00 44.57 2.27
53 54 2.839474 CGAGTTGCGATTGGACTTTTC 58.161 47.619 0.00 0.00 44.57 2.29
54 55 2.223144 CGAGTTGCGATTGGACTTTTCA 59.777 45.455 0.00 0.00 44.57 2.69
55 56 3.303725 CGAGTTGCGATTGGACTTTTCAA 60.304 43.478 0.00 0.00 44.57 2.69
56 57 4.613622 CGAGTTGCGATTGGACTTTTCAAT 60.614 41.667 0.00 0.00 44.57 2.57
57 58 5.200368 AGTTGCGATTGGACTTTTCAATT 57.800 34.783 0.00 0.00 35.26 2.32
58 59 5.600696 AGTTGCGATTGGACTTTTCAATTT 58.399 33.333 0.00 0.00 35.26 1.82
59 60 5.691754 AGTTGCGATTGGACTTTTCAATTTC 59.308 36.000 0.00 0.00 35.26 2.17
60 61 5.452078 TGCGATTGGACTTTTCAATTTCT 57.548 34.783 0.00 0.00 35.26 2.52
65 66 7.483059 GCGATTGGACTTTTCAATTTCTTCTAG 59.517 37.037 0.00 0.00 35.26 2.43
136 140 5.910723 CCTTTTTGCAAATTTAAAGCAGCTG 59.089 36.000 13.65 10.11 39.72 4.24
267 271 1.743252 CGACTCTTTCTGGCTGGGC 60.743 63.158 0.00 0.00 0.00 5.36
294 304 3.704061 CTCCTCCTACTTCTTCTTCCCTG 59.296 52.174 0.00 0.00 0.00 4.45
347 357 1.069204 CATAGAGGCACCGTGCTATGT 59.931 52.381 22.41 12.63 44.28 2.29
371 381 2.815647 GGACAAGCCCGCGAAGAG 60.816 66.667 8.23 0.00 0.00 2.85
380 390 1.294138 CCGCGAAGAGGTGGGTAAA 59.706 57.895 8.23 0.00 44.52 2.01
381 391 1.017701 CCGCGAAGAGGTGGGTAAAC 61.018 60.000 8.23 0.00 44.52 2.01
382 392 1.349259 CGCGAAGAGGTGGGTAAACG 61.349 60.000 0.00 0.00 0.00 3.60
412 439 5.673337 TCTGAAGAAGATTTTGACAACGG 57.327 39.130 0.00 0.00 0.00 4.44
421 448 0.534203 TTTGACAACGGGAGAGGTGC 60.534 55.000 0.00 0.00 0.00 5.01
422 449 2.432628 GACAACGGGAGAGGTGCG 60.433 66.667 0.00 0.00 0.00 5.34
450 477 4.083057 GCCTGTTCTTCATTTCCTGTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
452 479 4.703897 TGTTCTTCATTTCCTGTCTTCGT 58.296 39.130 0.00 0.00 0.00 3.85
461 488 0.514691 CCTGTCTTCGTTTGCTGCTC 59.485 55.000 0.00 0.00 0.00 4.26
463 490 1.458827 CTGTCTTCGTTTGCTGCTCTC 59.541 52.381 0.00 0.00 0.00 3.20
470 497 2.163613 TCGTTTGCTGCTCTCGAATCTA 59.836 45.455 0.00 0.00 0.00 1.98
476 503 5.521906 TGCTGCTCTCGAATCTAATAGTT 57.478 39.130 0.00 0.00 0.00 2.24
481 508 7.575909 GCTGCTCTCGAATCTAATAGTTCCATA 60.576 40.741 0.00 0.00 0.00 2.74
527 554 7.308649 TTTTGCATCAAATTTGTCCATGAATGG 60.309 33.333 17.47 2.68 39.96 3.16
559 586 2.225467 GAGCCTATGCCTCAACAATCC 58.775 52.381 0.00 0.00 38.69 3.01
560 587 0.947244 GCCTATGCCTCAACAATCCG 59.053 55.000 0.00 0.00 0.00 4.18
571 611 3.615155 TCAACAATCCGATGCCATGTAA 58.385 40.909 0.00 0.00 0.00 2.41
572 612 4.206375 TCAACAATCCGATGCCATGTAAT 58.794 39.130 0.00 0.00 0.00 1.89
573 613 5.372373 TCAACAATCCGATGCCATGTAATA 58.628 37.500 0.00 0.00 0.00 0.98
574 614 5.238432 TCAACAATCCGATGCCATGTAATAC 59.762 40.000 0.00 0.00 0.00 1.89
575 615 4.973168 ACAATCCGATGCCATGTAATACT 58.027 39.130 0.00 0.00 0.00 2.12
576 616 6.109156 ACAATCCGATGCCATGTAATACTA 57.891 37.500 0.00 0.00 0.00 1.82
577 617 6.166279 ACAATCCGATGCCATGTAATACTAG 58.834 40.000 0.00 0.00 0.00 2.57
578 618 6.166279 CAATCCGATGCCATGTAATACTAGT 58.834 40.000 0.00 0.00 0.00 2.57
579 619 5.801531 TCCGATGCCATGTAATACTAGTT 57.198 39.130 0.00 0.00 0.00 2.24
580 620 6.904463 TCCGATGCCATGTAATACTAGTTA 57.096 37.500 0.00 0.00 0.00 2.24
581 621 6.920817 TCCGATGCCATGTAATACTAGTTAG 58.079 40.000 0.00 0.00 0.00 2.34
582 622 5.577164 CCGATGCCATGTAATACTAGTTAGC 59.423 44.000 0.00 0.00 0.00 3.09
583 623 6.390721 CGATGCCATGTAATACTAGTTAGCT 58.609 40.000 0.00 0.00 0.00 3.32
584 624 6.528423 CGATGCCATGTAATACTAGTTAGCTC 59.472 42.308 0.00 0.00 0.00 4.09
585 625 5.769367 TGCCATGTAATACTAGTTAGCTCG 58.231 41.667 0.00 0.00 0.00 5.03
586 626 5.301045 TGCCATGTAATACTAGTTAGCTCGT 59.699 40.000 0.00 0.00 0.00 4.18
592 632 8.447924 TGTAATACTAGTTAGCTCGTCTCAAT 57.552 34.615 0.00 0.00 0.00 2.57
596 636 6.230849 ACTAGTTAGCTCGTCTCAATATCG 57.769 41.667 0.00 0.00 0.00 2.92
597 637 5.990386 ACTAGTTAGCTCGTCTCAATATCGA 59.010 40.000 0.00 0.00 0.00 3.59
600 640 6.202937 AGTTAGCTCGTCTCAATATCGAAAG 58.797 40.000 0.00 0.00 33.32 2.62
602 642 5.000012 AGCTCGTCTCAATATCGAAAGTT 58.000 39.130 0.00 0.00 33.32 2.66
605 645 5.517054 GCTCGTCTCAATATCGAAAGTTCTT 59.483 40.000 0.00 0.00 33.32 2.52
607 647 7.507672 TCGTCTCAATATCGAAAGTTCTTTC 57.492 36.000 13.37 13.37 0.00 2.62
647 687 5.411103 AAGGTAGTCCAGGATCTACATCT 57.589 43.478 21.40 12.73 38.46 2.90
661 701 4.883083 TCTACATCTGCATTCCGGATTAC 58.117 43.478 4.15 0.00 37.45 1.89
662 702 3.845781 ACATCTGCATTCCGGATTACT 57.154 42.857 4.15 0.00 37.45 2.24
663 703 4.955811 ACATCTGCATTCCGGATTACTA 57.044 40.909 4.15 0.00 37.45 1.82
664 704 4.632153 ACATCTGCATTCCGGATTACTAC 58.368 43.478 4.15 0.00 37.45 2.73
665 705 4.345257 ACATCTGCATTCCGGATTACTACT 59.655 41.667 4.15 0.00 37.45 2.57
666 706 5.538813 ACATCTGCATTCCGGATTACTACTA 59.461 40.000 4.15 0.00 37.45 1.82
667 707 5.707242 TCTGCATTCCGGATTACTACTAG 57.293 43.478 4.15 0.00 0.00 2.57
692 732 9.854668 AGTATATAGTTCTGACTTTGCTCTCTA 57.145 33.333 0.00 0.00 37.33 2.43
698 738 4.256920 TCTGACTTTGCTCTCTAAATGCC 58.743 43.478 0.00 0.00 0.00 4.40
740 780 7.283807 TCCTAGAATGACATGACCAATTCAATG 59.716 37.037 0.00 0.00 37.92 2.82
746 786 4.813027 ACATGACCAATTCAATGACTTGC 58.187 39.130 7.69 0.00 37.92 4.01
801 1229 1.352622 TTGACCTCTGGCCCTTGTGT 61.353 55.000 0.00 0.00 0.00 3.72
823 1251 3.758554 TCCAATGAAGCCTTTAGTTGAGC 59.241 43.478 0.00 0.00 0.00 4.26
1073 1514 0.180642 ATGATCTGCCAGAGCACCAG 59.819 55.000 15.87 0.00 44.04 4.00
1135 1576 2.327940 GTGCGCCGCATAATCACC 59.672 61.111 17.54 0.00 41.91 4.02
1182 1623 3.262420 TCTGCTCTAATTTGCTTCGGTC 58.738 45.455 0.00 0.00 0.00 4.79
1184 1625 1.671328 GCTCTAATTTGCTTCGGTCCC 59.329 52.381 0.00 0.00 0.00 4.46
1196 1638 2.266055 GGTCCCGTTCTGCCTCTG 59.734 66.667 0.00 0.00 0.00 3.35
1223 1665 1.300620 CAAGAACACGGAGCCGACA 60.301 57.895 16.83 0.00 42.83 4.35
1280 1722 3.733960 CTCTCGGCCGTCGACACA 61.734 66.667 27.15 1.93 43.74 3.72
1388 1830 0.037232 GCGGCTACAACTCCAACTCT 60.037 55.000 0.00 0.00 0.00 3.24
1715 2157 3.207669 CAGCAGCTCCGGCAATCC 61.208 66.667 0.00 0.00 41.70 3.01
1838 2280 2.124570 AAGCTCCGCGGCATGATT 60.125 55.556 23.51 15.08 34.17 2.57
1957 2399 4.821589 GGAGCTTCCCGCCGACAG 62.822 72.222 0.00 0.00 40.39 3.51
1998 2440 4.068302 GGAACGGTTACTCGAGCG 57.932 61.111 13.61 10.55 45.28 5.03
2000 2442 1.154073 GAACGGTTACTCGAGCGCT 60.154 57.895 11.27 11.27 43.75 5.92
2185 2627 3.839432 GTCGCGGAGGAGGGGAAG 61.839 72.222 6.13 0.00 0.00 3.46
2482 2927 4.864704 TTTTCACTAATGGTTCCAAGGC 57.135 40.909 0.00 0.00 0.00 4.35
2483 2928 3.517296 TTCACTAATGGTTCCAAGGCA 57.483 42.857 0.00 0.00 0.00 4.75
2484 2929 3.517296 TCACTAATGGTTCCAAGGCAA 57.483 42.857 0.00 0.00 0.00 4.52
2485 2930 3.838565 TCACTAATGGTTCCAAGGCAAA 58.161 40.909 0.00 0.00 0.00 3.68
2486 2931 4.415596 TCACTAATGGTTCCAAGGCAAAT 58.584 39.130 0.00 0.00 0.00 2.32
2487 2932 4.462483 TCACTAATGGTTCCAAGGCAAATC 59.538 41.667 0.00 0.00 0.00 2.17
2488 2933 4.463891 CACTAATGGTTCCAAGGCAAATCT 59.536 41.667 0.00 0.00 0.00 2.40
2489 2934 5.652014 CACTAATGGTTCCAAGGCAAATCTA 59.348 40.000 0.00 0.00 0.00 1.98
2490 2935 5.888161 ACTAATGGTTCCAAGGCAAATCTAG 59.112 40.000 0.00 0.00 0.00 2.43
2491 2936 2.446435 TGGTTCCAAGGCAAATCTAGC 58.554 47.619 0.00 0.00 0.00 3.42
2492 2937 2.224992 TGGTTCCAAGGCAAATCTAGCA 60.225 45.455 0.00 0.00 0.00 3.49
2493 2938 2.164422 GGTTCCAAGGCAAATCTAGCAC 59.836 50.000 0.00 0.00 0.00 4.40
2494 2939 3.084786 GTTCCAAGGCAAATCTAGCACT 58.915 45.455 0.00 0.00 0.00 4.40
2495 2940 3.439857 TCCAAGGCAAATCTAGCACTT 57.560 42.857 0.00 0.00 0.00 3.16
2496 2941 3.766545 TCCAAGGCAAATCTAGCACTTT 58.233 40.909 0.00 0.00 0.00 2.66
2497 2942 4.151883 TCCAAGGCAAATCTAGCACTTTT 58.848 39.130 0.00 0.00 0.00 2.27
2498 2943 4.588528 TCCAAGGCAAATCTAGCACTTTTT 59.411 37.500 0.00 0.00 0.00 1.94
2594 3039 6.260050 ACATGTACAAACGTGATTCTTCTGTT 59.740 34.615 0.00 0.00 44.09 3.16
2595 3040 6.281848 TGTACAAACGTGATTCTTCTGTTC 57.718 37.500 0.00 0.00 0.00 3.18
2599 3044 6.258160 ACAAACGTGATTCTTCTGTTCTTTG 58.742 36.000 0.00 0.00 0.00 2.77
2600 3045 5.424121 AACGTGATTCTTCTGTTCTTTGG 57.576 39.130 0.00 0.00 0.00 3.28
2601 3046 4.703897 ACGTGATTCTTCTGTTCTTTGGA 58.296 39.130 0.00 0.00 0.00 3.53
2602 3047 5.308825 ACGTGATTCTTCTGTTCTTTGGAT 58.691 37.500 0.00 0.00 0.00 3.41
2603 3048 5.180117 ACGTGATTCTTCTGTTCTTTGGATG 59.820 40.000 0.00 0.00 0.00 3.51
2605 3050 4.460382 TGATTCTTCTGTTCTTTGGATGGC 59.540 41.667 0.00 0.00 0.00 4.40
2606 3051 2.426522 TCTTCTGTTCTTTGGATGGCG 58.573 47.619 0.00 0.00 0.00 5.69
2607 3052 0.881118 TTCTGTTCTTTGGATGGCGC 59.119 50.000 0.00 0.00 0.00 6.53
2608 3053 1.135315 CTGTTCTTTGGATGGCGCG 59.865 57.895 0.00 0.00 0.00 6.86
2671 3120 2.108952 AGTCTCAGGCCTGATTTGGTTT 59.891 45.455 35.11 13.95 39.13 3.27
2678 3127 2.833943 GGCCTGATTTGGTTTGAAGGAT 59.166 45.455 0.00 0.00 0.00 3.24
2716 3165 4.928615 GCATAGGATCAAAGATTCGGAGAG 59.071 45.833 0.00 0.00 38.43 3.20
2718 3167 6.739843 GCATAGGATCAAAGATTCGGAGAGAA 60.740 42.308 0.00 0.00 43.93 2.87
2719 3168 5.683876 AGGATCAAAGATTCGGAGAGAAA 57.316 39.130 0.00 0.00 42.91 2.52
2720 3169 6.054860 AGGATCAAAGATTCGGAGAGAAAA 57.945 37.500 0.00 0.00 42.91 2.29
2721 3170 6.476378 AGGATCAAAGATTCGGAGAGAAAAA 58.524 36.000 0.00 0.00 42.91 1.94
2722 3171 7.115414 AGGATCAAAGATTCGGAGAGAAAAAT 58.885 34.615 0.00 0.00 42.91 1.82
2723 3172 8.267894 AGGATCAAAGATTCGGAGAGAAAAATA 58.732 33.333 0.00 0.00 42.91 1.40
2724 3173 8.893727 GGATCAAAGATTCGGAGAGAAAAATAA 58.106 33.333 0.00 0.00 42.91 1.40
2753 3202 5.741011 AGATGCATTCGGTTAGTAGGAAAA 58.259 37.500 0.00 0.00 0.00 2.29
2754 3203 6.177610 AGATGCATTCGGTTAGTAGGAAAAA 58.822 36.000 0.00 0.00 0.00 1.94
2755 3204 6.828785 AGATGCATTCGGTTAGTAGGAAAAAT 59.171 34.615 0.00 0.00 0.00 1.82
2765 3214 2.234414 AGTAGGAAAAATACGCACGGGA 59.766 45.455 0.00 0.00 0.00 5.14
2775 3224 0.244450 ACGCACGGGAATTTCGTAGA 59.756 50.000 7.32 0.00 38.94 2.59
2780 3229 4.210537 CGCACGGGAATTTCGTAGAAATAT 59.789 41.667 8.23 0.69 45.90 1.28
2845 3294 2.484264 AGCTCATTTTGTGCGTAGGAAC 59.516 45.455 0.00 0.00 41.31 3.62
2858 3307 2.007608 GTAGGAACGGGCAAGACAATC 58.992 52.381 0.00 0.00 0.00 2.67
2893 3342 6.097412 GGCAAATTTCATCCTATCAACTTCCT 59.903 38.462 0.00 0.00 0.00 3.36
2894 3343 7.285401 GGCAAATTTCATCCTATCAACTTCCTA 59.715 37.037 0.00 0.00 0.00 2.94
2934 3383 6.007703 TCCTACGTTTTGATTTCCTCCAAAT 58.992 36.000 0.00 0.00 37.41 2.32
2935 3384 6.072175 TCCTACGTTTTGATTTCCTCCAAATG 60.072 38.462 0.00 0.00 34.60 2.32
2936 3385 5.782893 ACGTTTTGATTTCCTCCAAATGA 57.217 34.783 0.00 0.00 34.60 2.57
2944 3393 6.018469 TGATTTCCTCCAAATGAAATGAGGT 58.982 36.000 2.49 0.00 43.91 3.85
2949 3398 4.458989 CCTCCAAATGAAATGAGGTCGAAA 59.541 41.667 0.00 0.00 39.64 3.46
2989 3438 8.931385 AAAATCCGAAATTACATTTGAGATGG 57.069 30.769 0.00 0.00 31.47 3.51
3007 3456 2.109126 GCCTTAGCTGGAGTTGCCG 61.109 63.158 0.00 0.00 40.66 5.69
3014 3463 0.660300 GCTGGAGTTGCCGAAAAACG 60.660 55.000 0.00 0.00 40.66 3.60
3030 3479 2.825086 AACGAGTGTGTTTCTTGCAC 57.175 45.000 0.00 0.00 37.37 4.57
3036 3485 0.754957 TGTGTTTCTTGCACCCCAGG 60.755 55.000 0.00 0.00 36.11 4.45
3042 3491 0.768221 TCTTGCACCCCAGGTCTTCT 60.768 55.000 0.00 0.00 31.02 2.85
3052 3501 4.265078 ACCCCAGGTCTTCTAGAGAAAGAT 60.265 45.833 0.00 0.00 35.79 2.40
3067 3516 7.086230 AGAGAAAGATCAACATCATGAAAGC 57.914 36.000 0.00 0.00 32.06 3.51
3083 3532 0.904865 AAGCATGGAGTGACTCGGGA 60.905 55.000 6.50 0.00 0.00 5.14
3089 3538 0.108138 GGAGTGACTCGGGAATGTGG 60.108 60.000 6.50 0.00 0.00 4.17
3123 3573 5.609423 TGGTTTTGCAAATGAGCTTATGTT 58.391 33.333 13.65 0.00 34.99 2.71
3138 3588 5.102313 GCTTATGTTATTGCAGTTTGGTCC 58.898 41.667 0.00 0.00 0.00 4.46
3201 3655 2.371841 TGGAACAGGTGTAAGCATGTCT 59.628 45.455 0.00 0.00 36.26 3.41
3202 3656 2.744202 GGAACAGGTGTAAGCATGTCTG 59.256 50.000 0.00 0.00 36.26 3.51
3245 3699 3.441101 ACACTTGTCTGGCTGTAGGATA 58.559 45.455 0.00 0.00 0.00 2.59
3277 3731 5.517411 GGTGTAGGTTTTTGCAAGTGTTTAC 59.483 40.000 0.00 2.76 0.00 2.01
3295 3749 6.413818 GTGTTTACTTTGTCATTGTGCAGTAC 59.586 38.462 0.00 0.00 0.00 2.73
3321 3775 6.385033 CATCCAAAGATCTTGACCTTGTTTC 58.615 40.000 9.17 0.00 0.00 2.78
3336 3790 0.395312 GTTTCGAACCCTGGAGGACA 59.605 55.000 0.00 0.00 39.89 4.02
3348 3802 1.226746 GGAGGACAACACCAAGTTCG 58.773 55.000 0.00 0.00 38.74 3.95
3375 3829 3.521126 AGGATCATCAACTGCCTTGTACT 59.479 43.478 0.00 0.00 0.00 2.73
3376 3830 3.624861 GGATCATCAACTGCCTTGTACTG 59.375 47.826 0.00 0.00 0.00 2.74
3377 3831 3.769739 TCATCAACTGCCTTGTACTGT 57.230 42.857 0.00 0.00 0.00 3.55
3378 3832 4.085357 TCATCAACTGCCTTGTACTGTT 57.915 40.909 0.00 0.00 0.00 3.16
3379 3833 3.814842 TCATCAACTGCCTTGTACTGTTG 59.185 43.478 7.06 7.06 43.98 3.33
3380 3834 3.275617 TCAACTGCCTTGTACTGTTGT 57.724 42.857 11.54 0.00 43.44 3.32
3381 3835 4.409718 TCAACTGCCTTGTACTGTTGTA 57.590 40.909 11.54 0.00 43.44 2.41
3382 3836 4.124238 TCAACTGCCTTGTACTGTTGTAC 58.876 43.478 11.54 0.00 46.74 2.90
3393 3847 3.126001 ACTGTTGTACATGGTGGAGTG 57.874 47.619 0.00 0.00 0.00 3.51
3403 3857 2.594592 GTGGAGTGTGCGGCCTTT 60.595 61.111 0.00 0.00 0.00 3.11
3411 3865 1.165907 TGTGCGGCCTTTGTTGAGAG 61.166 55.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.036431 CTCGCAAGGGGAGGTTTTT 57.964 52.632 2.66 0.00 38.66 1.94
19 20 4.821935 CTCGCAAGGGGAGGTTTT 57.178 55.556 2.66 0.00 38.66 2.43
28 29 1.135315 CCAATCGCAACTCGCAAGG 59.865 57.895 0.00 0.00 42.60 3.61
29 30 0.179215 GTCCAATCGCAACTCGCAAG 60.179 55.000 0.00 0.00 42.60 4.01
30 31 0.602638 AGTCCAATCGCAACTCGCAA 60.603 50.000 0.00 0.00 42.60 4.85
31 32 0.602638 AAGTCCAATCGCAACTCGCA 60.603 50.000 0.00 0.00 42.60 5.10
32 33 0.517316 AAAGTCCAATCGCAACTCGC 59.483 50.000 0.00 0.00 38.27 5.03
33 34 2.223144 TGAAAAGTCCAATCGCAACTCG 59.777 45.455 0.00 0.00 40.15 4.18
34 35 3.896648 TGAAAAGTCCAATCGCAACTC 57.103 42.857 0.00 0.00 0.00 3.01
35 36 4.853924 ATTGAAAAGTCCAATCGCAACT 57.146 36.364 0.00 0.00 28.89 3.16
36 37 5.691754 AGAAATTGAAAAGTCCAATCGCAAC 59.308 36.000 0.00 0.00 33.51 4.17
37 38 5.841810 AGAAATTGAAAAGTCCAATCGCAA 58.158 33.333 0.00 0.00 33.51 4.85
38 39 5.452078 AGAAATTGAAAAGTCCAATCGCA 57.548 34.783 0.00 0.00 33.51 5.10
39 40 6.152379 AGAAGAAATTGAAAAGTCCAATCGC 58.848 36.000 0.00 0.00 33.51 4.58
40 41 8.721478 TCTAGAAGAAATTGAAAAGTCCAATCG 58.279 33.333 0.00 0.00 33.51 3.34
42 43 9.799106 TCTCTAGAAGAAATTGAAAAGTCCAAT 57.201 29.630 0.00 0.00 35.92 3.16
43 44 9.627123 TTCTCTAGAAGAAATTGAAAAGTCCAA 57.373 29.630 0.00 0.00 41.10 3.53
44 45 9.627123 TTTCTCTAGAAGAAATTGAAAAGTCCA 57.373 29.630 11.16 0.00 46.64 4.02
108 111 6.118852 TGCTTTAAATTTGCAAAAAGGACCT 58.881 32.000 17.19 0.00 33.48 3.85
118 121 4.152759 GCATTCAGCTGCTTTAAATTTGCA 59.847 37.500 9.47 1.07 41.15 4.08
119 122 4.644954 GCATTCAGCTGCTTTAAATTTGC 58.355 39.130 9.47 2.01 41.15 3.68
136 140 3.940209 TGGAATTGGAACACAGCATTC 57.060 42.857 0.00 0.00 39.29 2.67
267 271 1.679153 GAAGAAGTAGGAGGAGGAGCG 59.321 57.143 0.00 0.00 0.00 5.03
294 304 4.608445 CGGATTTCTGAAACGTGAAGACAC 60.608 45.833 4.73 0.00 42.88 3.67
347 357 4.924019 CGGGCTTGTCCGTGATAA 57.076 55.556 5.40 0.00 44.60 1.75
357 367 3.121030 CACCTCTTCGCGGGCTTG 61.121 66.667 6.13 0.00 0.00 4.01
364 374 1.017701 CCGTTTACCCACCTCTTCGC 61.018 60.000 0.00 0.00 0.00 4.70
371 381 0.323957 AGCTTCTCCGTTTACCCACC 59.676 55.000 0.00 0.00 0.00 4.61
372 382 1.275573 AGAGCTTCTCCGTTTACCCAC 59.724 52.381 0.00 0.00 0.00 4.61
373 383 1.275291 CAGAGCTTCTCCGTTTACCCA 59.725 52.381 0.00 0.00 0.00 4.51
374 384 1.549170 TCAGAGCTTCTCCGTTTACCC 59.451 52.381 0.00 0.00 0.00 3.69
375 385 3.056749 TCTTCAGAGCTTCTCCGTTTACC 60.057 47.826 0.00 0.00 0.00 2.85
376 386 4.175787 TCTTCAGAGCTTCTCCGTTTAC 57.824 45.455 0.00 0.00 0.00 2.01
377 387 4.523173 TCTTCTTCAGAGCTTCTCCGTTTA 59.477 41.667 0.00 0.00 0.00 2.01
380 390 2.520069 TCTTCTTCAGAGCTTCTCCGT 58.480 47.619 0.00 0.00 0.00 4.69
381 391 3.799281 ATCTTCTTCAGAGCTTCTCCG 57.201 47.619 0.00 0.00 33.87 4.63
382 392 5.936956 TCAAAATCTTCTTCAGAGCTTCTCC 59.063 40.000 0.00 0.00 33.87 3.71
412 439 4.459089 GGCAGACCGCACCTCTCC 62.459 72.222 0.00 0.00 45.17 3.71
421 448 1.813513 AATGAAGAACAGGCAGACCG 58.186 50.000 0.00 0.00 42.76 4.79
422 449 2.489722 GGAAATGAAGAACAGGCAGACC 59.510 50.000 0.00 0.00 0.00 3.85
450 477 1.354040 AGATTCGAGAGCAGCAAACG 58.646 50.000 0.00 0.00 0.00 3.60
452 479 5.907207 ACTATTAGATTCGAGAGCAGCAAA 58.093 37.500 0.00 0.00 0.00 3.68
470 497 8.560903 AGGAAGGTTCTGAAATATGGAACTATT 58.439 33.333 0.00 0.00 39.20 1.73
476 503 6.443849 ACAGTAGGAAGGTTCTGAAATATGGA 59.556 38.462 0.00 0.00 0.00 3.41
481 508 6.239036 GCAAAACAGTAGGAAGGTTCTGAAAT 60.239 38.462 0.00 0.00 0.00 2.17
527 554 0.762461 ATAGGCTCAGGAGTCAGGCC 60.762 60.000 3.47 0.00 42.74 5.19
559 586 6.390721 AGCTAACTAGTATTACATGGCATCG 58.609 40.000 0.00 0.00 0.00 3.84
560 587 6.528423 CGAGCTAACTAGTATTACATGGCATC 59.472 42.308 0.00 0.00 0.00 3.91
571 611 7.818446 TCGATATTGAGACGAGCTAACTAGTAT 59.182 37.037 0.00 0.00 31.17 2.12
572 612 7.150640 TCGATATTGAGACGAGCTAACTAGTA 58.849 38.462 0.00 0.00 31.17 1.82
573 613 5.990386 TCGATATTGAGACGAGCTAACTAGT 59.010 40.000 0.00 0.00 34.06 2.57
574 614 6.469139 TCGATATTGAGACGAGCTAACTAG 57.531 41.667 0.00 0.00 0.00 2.57
575 615 6.856135 TTCGATATTGAGACGAGCTAACTA 57.144 37.500 0.00 0.00 37.36 2.24
576 616 5.752892 TTCGATATTGAGACGAGCTAACT 57.247 39.130 0.00 0.00 37.36 2.24
577 617 5.972382 ACTTTCGATATTGAGACGAGCTAAC 59.028 40.000 0.00 0.00 37.36 2.34
578 618 6.132791 ACTTTCGATATTGAGACGAGCTAA 57.867 37.500 0.00 0.00 37.36 3.09
579 619 5.752892 ACTTTCGATATTGAGACGAGCTA 57.247 39.130 0.00 0.00 37.36 3.32
580 620 4.640789 ACTTTCGATATTGAGACGAGCT 57.359 40.909 0.00 0.00 37.36 4.09
581 621 5.038033 AGAACTTTCGATATTGAGACGAGC 58.962 41.667 0.00 0.00 37.36 5.03
582 622 7.513190 AAAGAACTTTCGATATTGAGACGAG 57.487 36.000 0.00 0.00 37.36 4.18
583 623 7.507672 GAAAGAACTTTCGATATTGAGACGA 57.492 36.000 10.77 0.00 39.42 4.20
614 654 3.350833 TGGACTACCTTTACGGAGAGAC 58.649 50.000 0.00 0.00 37.04 3.36
621 661 4.885907 TGTAGATCCTGGACTACCTTTACG 59.114 45.833 22.42 0.00 38.40 3.18
647 687 8.818622 ATATACTAGTAGTAATCCGGAATGCA 57.181 34.615 9.01 0.00 33.89 3.96
663 703 9.635404 AGAGCAAAGTCAGAACTATATACTAGT 57.365 33.333 0.00 0.00 33.48 2.57
665 705 9.854668 AGAGAGCAAAGTCAGAACTATATACTA 57.145 33.333 0.00 0.00 33.48 1.82
666 706 8.760980 AGAGAGCAAAGTCAGAACTATATACT 57.239 34.615 0.00 0.00 33.48 2.12
684 724 4.784177 TCATCAATGGCATTTAGAGAGCA 58.216 39.130 10.65 0.00 0.00 4.26
692 732 4.811969 TGCTTCTTCATCAATGGCATTT 57.188 36.364 10.65 0.00 0.00 2.32
698 738 7.444487 TCATTCTAGGATGCTTCTTCATCAATG 59.556 37.037 6.09 6.99 43.44 2.82
746 786 0.107703 TTATGACAGGCCTTGAGCGG 60.108 55.000 0.00 0.00 45.17 5.52
756 796 5.812642 CAGTAGGTTAACTGCTTATGACAGG 59.187 44.000 5.42 0.00 40.44 4.00
801 1229 3.758554 GCTCAACTAAAGGCTTCATTGGA 59.241 43.478 0.00 0.00 0.00 3.53
1073 1514 1.661821 CAGTAGTAGATGGCGGCGC 60.662 63.158 26.17 26.17 0.00 6.53
1182 1623 2.266055 GGACAGAGGCAGAACGGG 59.734 66.667 0.00 0.00 0.00 5.28
1184 1625 2.811317 GCGGACAGAGGCAGAACG 60.811 66.667 0.00 0.00 0.00 3.95
1196 1638 2.946762 GTGTTCTTGCCTGCGGAC 59.053 61.111 0.00 0.00 0.00 4.79
1223 1665 1.415374 CGTTGTCCGTTTCATCGTCT 58.585 50.000 0.00 0.00 0.00 4.18
1355 1797 3.382832 CCGCACGAGAAGGGAGGT 61.383 66.667 0.00 0.00 38.52 3.85
1434 1876 0.951040 GGTGAACCGAAGCCTCTGTG 60.951 60.000 0.00 0.00 0.00 3.66
1485 1927 3.122250 CTTCGACGCCCCGAGGTAG 62.122 68.421 0.00 0.00 39.90 3.18
1512 1954 0.982852 TCCTGTCCATCCGAGCCAAT 60.983 55.000 0.00 0.00 0.00 3.16
1637 2079 0.109689 GGACAGAGAAGTCACGTCGG 60.110 60.000 0.00 0.00 40.29 4.79
1643 2085 1.475403 GATCCGGGACAGAGAAGTCA 58.525 55.000 0.00 0.00 40.29 3.41
1715 2157 3.192954 CTCCCTAGAGCTCAGCGCG 62.193 68.421 17.77 0.00 45.59 6.86
1981 2423 2.157073 GCGCTCGAGTAACCGTTCC 61.157 63.158 15.13 0.00 0.00 3.62
2128 2570 3.293702 GGAGAAGCTCCGAGCACT 58.706 61.111 22.29 18.97 45.56 4.40
2172 2614 3.839432 GACGCTTCCCCTCCTCCG 61.839 72.222 0.00 0.00 0.00 4.63
2214 2659 2.357517 CGCCACCTCGAGCACTTT 60.358 61.111 6.99 0.00 0.00 2.66
2451 2896 5.623169 ACCATTAGTGAAAAAGAACCCGTA 58.377 37.500 0.00 0.00 0.00 4.02
2454 2899 5.303333 TGGAACCATTAGTGAAAAAGAACCC 59.697 40.000 0.00 0.00 0.00 4.11
2470 2915 3.026694 GCTAGATTTGCCTTGGAACCAT 58.973 45.455 0.00 0.00 0.00 3.55
2499 2944 6.150307 TGCTAGATTTGCCTTACGATCAAAAA 59.850 34.615 0.00 0.00 34.00 1.94
2500 2945 5.645929 TGCTAGATTTGCCTTACGATCAAAA 59.354 36.000 0.00 0.00 34.00 2.44
2501 2946 5.064707 GTGCTAGATTTGCCTTACGATCAAA 59.935 40.000 0.00 0.00 34.68 2.69
2502 2947 4.570772 GTGCTAGATTTGCCTTACGATCAA 59.429 41.667 0.00 0.00 0.00 2.57
2503 2948 4.119862 GTGCTAGATTTGCCTTACGATCA 58.880 43.478 0.00 0.00 0.00 2.92
2504 2949 4.372656 AGTGCTAGATTTGCCTTACGATC 58.627 43.478 0.00 0.00 0.00 3.69
2505 2950 4.408182 AGTGCTAGATTTGCCTTACGAT 57.592 40.909 0.00 0.00 0.00 3.73
2506 2951 3.887621 AGTGCTAGATTTGCCTTACGA 57.112 42.857 0.00 0.00 0.00 3.43
2507 2952 3.063997 CCAAGTGCTAGATTTGCCTTACG 59.936 47.826 0.00 0.00 0.00 3.18
2508 2953 4.010349 ACCAAGTGCTAGATTTGCCTTAC 58.990 43.478 0.00 0.00 0.00 2.34
2509 2954 4.301072 ACCAAGTGCTAGATTTGCCTTA 57.699 40.909 0.00 0.00 0.00 2.69
2510 2955 3.160679 ACCAAGTGCTAGATTTGCCTT 57.839 42.857 0.00 0.00 0.00 4.35
2511 2956 2.887151 ACCAAGTGCTAGATTTGCCT 57.113 45.000 0.00 0.00 0.00 4.75
2512 2957 3.375299 CAGTACCAAGTGCTAGATTTGCC 59.625 47.826 0.00 0.00 0.00 4.52
2513 2958 3.375299 CCAGTACCAAGTGCTAGATTTGC 59.625 47.826 0.00 0.00 0.00 3.68
2594 3039 0.886938 TTTCACGCGCCATCCAAAGA 60.887 50.000 5.73 0.00 0.00 2.52
2595 3040 0.039617 TTTTCACGCGCCATCCAAAG 60.040 50.000 5.73 0.00 0.00 2.77
2599 3044 1.154225 CTGTTTTCACGCGCCATCC 60.154 57.895 5.73 0.00 0.00 3.51
2600 3045 0.447801 ATCTGTTTTCACGCGCCATC 59.552 50.000 5.73 0.00 0.00 3.51
2601 3046 0.881118 AATCTGTTTTCACGCGCCAT 59.119 45.000 5.73 0.00 0.00 4.40
2602 3047 0.040514 CAATCTGTTTTCACGCGCCA 60.041 50.000 5.73 0.00 0.00 5.69
2603 3048 0.729140 CCAATCTGTTTTCACGCGCC 60.729 55.000 5.73 0.00 0.00 6.53
2605 3050 1.059657 CGCCAATCTGTTTTCACGCG 61.060 55.000 3.53 3.53 0.00 6.01
2606 3051 0.040425 ACGCCAATCTGTTTTCACGC 60.040 50.000 0.00 0.00 0.00 5.34
2607 3052 1.262950 TGACGCCAATCTGTTTTCACG 59.737 47.619 0.00 0.00 0.00 4.35
2608 3053 2.604614 GGTGACGCCAATCTGTTTTCAC 60.605 50.000 0.00 0.00 37.17 3.18
2649 3095 1.707427 ACCAAATCAGGCCTGAGACTT 59.293 47.619 37.03 26.46 43.61 3.01
2650 3096 1.366319 ACCAAATCAGGCCTGAGACT 58.634 50.000 37.03 22.64 43.61 3.24
2651 3097 2.206576 AACCAAATCAGGCCTGAGAC 57.793 50.000 37.03 0.00 43.61 3.36
2652 3098 2.108075 TCAAACCAAATCAGGCCTGAGA 59.892 45.455 37.03 24.04 43.61 3.27
2653 3099 2.517959 TCAAACCAAATCAGGCCTGAG 58.482 47.619 37.03 26.32 43.61 3.35
2654 3100 2.673775 TCAAACCAAATCAGGCCTGA 57.326 45.000 36.73 36.73 44.59 3.86
2655 3101 2.028748 CCTTCAAACCAAATCAGGCCTG 60.029 50.000 27.87 27.87 0.00 4.85
2692 3141 4.590647 TCTCCGAATCTTTGATCCTATGCT 59.409 41.667 0.00 0.00 0.00 3.79
2693 3142 4.887748 TCTCCGAATCTTTGATCCTATGC 58.112 43.478 0.00 0.00 0.00 3.14
2723 3172 9.436957 CCTACTAACCGAATGCATCTATAATTT 57.563 33.333 0.00 0.00 0.00 1.82
2724 3173 8.812972 TCCTACTAACCGAATGCATCTATAATT 58.187 33.333 0.00 0.00 0.00 1.40
2725 3174 8.362464 TCCTACTAACCGAATGCATCTATAAT 57.638 34.615 0.00 0.00 0.00 1.28
2726 3175 7.770366 TCCTACTAACCGAATGCATCTATAA 57.230 36.000 0.00 0.00 0.00 0.98
2744 3193 2.234414 TCCCGTGCGTATTTTTCCTACT 59.766 45.455 0.00 0.00 0.00 2.57
2753 3202 1.729284 ACGAAATTCCCGTGCGTATT 58.271 45.000 5.24 0.00 38.97 1.89
2754 3203 2.099592 TCTACGAAATTCCCGTGCGTAT 59.900 45.455 13.85 0.00 40.76 3.06
2755 3204 1.472082 TCTACGAAATTCCCGTGCGTA 59.528 47.619 13.85 0.00 40.76 4.42
2796 3245 6.357367 AGTGGGTGTATAGATTCATCCAAAC 58.643 40.000 2.97 0.00 44.87 2.93
2804 3253 5.675538 AGCTTTGAGTGGGTGTATAGATTC 58.324 41.667 0.00 0.00 0.00 2.52
2811 3260 3.788227 AATGAGCTTTGAGTGGGTGTA 57.212 42.857 0.00 0.00 0.00 2.90
2815 3264 3.645884 CACAAAATGAGCTTTGAGTGGG 58.354 45.455 2.92 0.00 38.35 4.61
2845 3294 2.017049 CCTAAAGGATTGTCTTGCCCG 58.983 52.381 0.00 0.00 37.39 6.13
2869 3318 7.105241 AGGAAGTTGATAGGATGAAATTTGC 57.895 36.000 0.00 0.00 0.00 3.68
2904 3353 7.551617 GGAGGAAATCAAAACGTAGGATTTAGA 59.448 37.037 16.93 4.44 40.32 2.10
2989 3438 2.109126 CGGCAACTCCAGCTAAGGC 61.109 63.158 0.00 0.00 39.06 4.35
3007 3456 4.030195 GTGCAAGAAACACACTCGTTTTTC 59.970 41.667 0.00 0.00 40.56 2.29
3014 3463 0.668535 GGGGTGCAAGAAACACACTC 59.331 55.000 0.00 0.00 41.33 3.51
3030 3479 3.714144 TCTTTCTCTAGAAGACCTGGGG 58.286 50.000 0.00 0.00 35.21 4.96
3036 3485 9.033481 CATGATGTTGATCTTTCTCTAGAAGAC 57.967 37.037 0.00 0.00 35.21 3.01
3042 3491 7.825761 TGCTTTCATGATGTTGATCTTTCTCTA 59.174 33.333 0.00 0.00 0.00 2.43
3067 3516 1.208052 ACATTCCCGAGTCACTCCATG 59.792 52.381 0.00 0.00 0.00 3.66
3083 3532 1.062505 ACCAACTTCCCAACCCACATT 60.063 47.619 0.00 0.00 0.00 2.71
3089 3538 1.208293 TGCAAAACCAACTTCCCAACC 59.792 47.619 0.00 0.00 0.00 3.77
3123 3573 1.742831 GCATCGGACCAAACTGCAATA 59.257 47.619 0.00 0.00 33.13 1.90
3138 3588 1.462616 TTGGAGGACAATTGGCATCG 58.537 50.000 19.07 0.00 34.05 3.84
3198 3652 2.546494 GCCTGCACCACACACAGAC 61.546 63.158 0.00 0.00 33.10 3.51
3201 3655 1.898094 GATGCCTGCACCACACACA 60.898 57.895 0.00 0.00 0.00 3.72
3202 3656 1.601759 AGATGCCTGCACCACACAC 60.602 57.895 0.00 0.00 0.00 3.82
3245 3699 3.314357 GCAAAAACCTACACCGAAAGACT 59.686 43.478 0.00 0.00 0.00 3.24
3277 3731 2.884012 TGGGTACTGCACAATGACAAAG 59.116 45.455 0.00 0.00 0.00 2.77
3279 3733 2.647683 TGGGTACTGCACAATGACAA 57.352 45.000 0.00 0.00 0.00 3.18
3295 3749 3.659183 AGGTCAAGATCTTTGGATGGG 57.341 47.619 4.86 0.00 31.46 4.00
3321 3775 0.602905 GTGTTGTCCTCCAGGGTTCG 60.603 60.000 0.00 0.00 36.25 3.95
3375 3829 2.844946 CACACTCCACCATGTACAACA 58.155 47.619 0.00 0.00 0.00 3.33
3376 3830 1.535462 GCACACTCCACCATGTACAAC 59.465 52.381 0.00 0.00 0.00 3.32
3377 3831 1.875996 CGCACACTCCACCATGTACAA 60.876 52.381 0.00 0.00 0.00 2.41
3378 3832 0.320334 CGCACACTCCACCATGTACA 60.320 55.000 0.00 0.00 0.00 2.90
3379 3833 1.019278 CCGCACACTCCACCATGTAC 61.019 60.000 0.00 0.00 0.00 2.90
3380 3834 1.295101 CCGCACACTCCACCATGTA 59.705 57.895 0.00 0.00 0.00 2.29
3381 3835 2.032528 CCGCACACTCCACCATGT 59.967 61.111 0.00 0.00 0.00 3.21
3382 3836 3.434319 GCCGCACACTCCACCATG 61.434 66.667 0.00 0.00 0.00 3.66
3393 3847 0.884704 TCTCTCAACAAAGGCCGCAC 60.885 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.