Multiple sequence alignment - TraesCS1A01G301200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G301200 chr1A 100.000 4728 0 0 1 4728 495595938 495591211 0.000000e+00 8732.0
1 TraesCS1A01G301200 chr1A 79.487 585 84 25 3075 3639 495487837 495487269 2.670000e-102 383.0
2 TraesCS1A01G301200 chr1A 91.525 59 5 0 3763 3821 571987676 571987618 1.090000e-11 82.4
3 TraesCS1A01G301200 chr1B 94.455 1533 58 13 2254 3771 534172606 534171086 0.000000e+00 2335.0
4 TraesCS1A01G301200 chr1B 92.884 1349 39 25 863 2195 534174103 534172796 0.000000e+00 1906.0
5 TraesCS1A01G301200 chr1B 88.854 628 56 8 4106 4728 534169023 534168405 0.000000e+00 760.0
6 TraesCS1A01G301200 chr1B 80.340 529 71 22 3064 3574 533952956 533952443 2.080000e-98 370.0
7 TraesCS1A01G301200 chr1B 89.958 239 16 5 3821 4051 534171080 534170842 7.690000e-78 302.0
8 TraesCS1A01G301200 chr1B 90.217 184 15 1 683 866 534174490 534174310 2.200000e-58 237.0
9 TraesCS1A01G301200 chr1B 78.613 346 57 12 1130 1462 533956444 533956103 3.710000e-51 213.0
10 TraesCS1A01G301200 chr1B 81.567 217 31 6 488 695 534174767 534174551 2.260000e-38 171.0
11 TraesCS1A01G301200 chr1B 96.721 61 2 0 4049 4109 534169414 534169354 8.370000e-18 102.0
12 TraesCS1A01G301200 chr1D 90.108 930 47 20 683 1609 398874398 398873511 0.000000e+00 1166.0
13 TraesCS1A01G301200 chr1D 89.422 917 73 10 3821 4728 398870694 398869793 0.000000e+00 1134.0
14 TraesCS1A01G301200 chr1D 90.924 617 30 9 2919 3516 398872077 398871468 0.000000e+00 806.0
15 TraesCS1A01G301200 chr1D 81.461 534 60 20 3062 3574 398558597 398558082 7.370000e-108 401.0
16 TraesCS1A01G301200 chr1D 81.443 388 30 25 1636 1996 398873508 398873136 3.600000e-71 279.0
17 TraesCS1A01G301200 chr1D 83.540 322 28 11 2276 2591 398872564 398872262 1.300000e-70 278.0
18 TraesCS1A01G301200 chr1D 92.593 162 6 3 3614 3770 398870861 398870701 1.320000e-55 228.0
19 TraesCS1A01G301200 chr1D 76.724 348 65 11 1130 1463 398484579 398484234 3.760000e-41 180.0
20 TraesCS1A01G301200 chr1D 94.118 119 5 1 3513 3631 398871327 398871211 3.760000e-41 180.0
21 TraesCS1A01G301200 chr1D 78.033 305 47 9 1069 1369 398560888 398560600 1.750000e-39 174.0
22 TraesCS1A01G301200 chr7A 86.709 158 19 2 336 491 421785159 421785002 1.750000e-39 174.0
23 TraesCS1A01G301200 chr7A 85.806 155 19 3 342 494 54675434 54675281 1.360000e-35 161.0
24 TraesCS1A01G301200 chr7A 83.439 157 24 2 337 492 609383412 609383567 1.370000e-30 145.0
25 TraesCS1A01G301200 chr7B 86.452 155 18 3 336 488 153426763 153426916 2.930000e-37 167.0
26 TraesCS1A01G301200 chr7B 100.000 46 0 0 3776 3821 527966551 527966506 8.430000e-13 86.1
27 TraesCS1A01G301200 chr7B 97.826 46 1 0 3776 3821 79095345 79095300 3.920000e-11 80.5
28 TraesCS1A01G301200 chr5D 88.189 127 14 1 347 472 346639779 346639905 2.950000e-32 150.0
29 TraesCS1A01G301200 chr4D 83.660 153 24 1 337 488 82727680 82727528 4.930000e-30 143.0
30 TraesCS1A01G301200 chr4A 83.660 153 24 1 337 488 494006925 494006773 4.930000e-30 143.0
31 TraesCS1A01G301200 chr3B 83.226 155 23 1 337 488 447622192 447622346 6.380000e-29 139.0
32 TraesCS1A01G301200 chr6D 81.169 154 27 2 337 488 445933302 445933149 6.430000e-24 122.0
33 TraesCS1A01G301200 chr3A 100.000 47 0 0 3775 3821 747736714 747736760 2.340000e-13 87.9
34 TraesCS1A01G301200 chr7D 100.000 45 0 0 3777 3821 588090384 588090428 3.030000e-12 84.2
35 TraesCS1A01G301200 chr3D 97.826 46 1 0 3776 3821 23142489 23142444 3.920000e-11 80.5
36 TraesCS1A01G301200 chr2D 97.826 46 1 0 3776 3821 547854165 547854120 3.920000e-11 80.5
37 TraesCS1A01G301200 chr2D 97.826 46 0 1 3776 3821 32739279 32739235 1.410000e-10 78.7
38 TraesCS1A01G301200 chr2B 97.778 45 1 0 3777 3821 104800028 104799984 1.410000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G301200 chr1A 495591211 495595938 4727 True 8732.000000 8732 100.000000 1 4728 1 chr1A.!!$R2 4727
1 TraesCS1A01G301200 chr1A 495487269 495487837 568 True 383.000000 383 79.487000 3075 3639 1 chr1A.!!$R1 564
2 TraesCS1A01G301200 chr1B 534168405 534174767 6362 True 830.428571 2335 90.665143 488 4728 7 chr1B.!!$R2 4240
3 TraesCS1A01G301200 chr1B 533952443 533956444 4001 True 291.500000 370 79.476500 1130 3574 2 chr1B.!!$R1 2444
4 TraesCS1A01G301200 chr1D 398869793 398874398 4605 True 581.571429 1166 88.878286 683 4728 7 chr1D.!!$R3 4045
5 TraesCS1A01G301200 chr1D 398558082 398560888 2806 True 287.500000 401 79.747000 1069 3574 2 chr1D.!!$R2 2505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 601 0.032678 CTTCCTCGGATGACCATCGG 59.967 60.0 10.23 10.23 38.69 4.18 F
1068 1361 0.457851 CACATCGTCTCCACCTCCTC 59.542 60.0 0.00 0.00 0.00 3.71 F
2714 5197 0.039035 TATTGCAGAGGCCGGGTTTT 59.961 50.0 2.18 0.00 40.13 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 2295 0.318360 TAGATCAATGGTACGCGCGG 60.318 55.0 35.22 16.31 0.00 6.46 R
2771 5254 0.034337 GTTTGAGTCGGGTGCCACTA 59.966 55.0 0.00 0.00 0.00 2.74 R
4650 10002 0.249699 ATATTCGTTGCCGCATCCGA 60.250 50.0 10.58 10.58 36.29 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.761165 ACTACGTACAAATTTGGCTTGTT 57.239 34.783 21.74 2.73 38.05 2.83
25 26 6.139048 ACTACGTACAAATTTGGCTTGTTT 57.861 33.333 21.74 2.02 38.05 2.83
26 27 7.261829 ACTACGTACAAATTTGGCTTGTTTA 57.738 32.000 21.74 1.06 38.05 2.01
27 28 7.357303 ACTACGTACAAATTTGGCTTGTTTAG 58.643 34.615 21.74 13.47 38.05 1.85
39 40 4.708726 GCTTGTTTAGCTCCACATCATT 57.291 40.909 0.00 0.00 46.77 2.57
40 41 5.064441 GCTTGTTTAGCTCCACATCATTT 57.936 39.130 0.00 0.00 46.77 2.32
41 42 5.098211 GCTTGTTTAGCTCCACATCATTTC 58.902 41.667 0.00 0.00 46.77 2.17
42 43 4.944962 TGTTTAGCTCCACATCATTTCG 57.055 40.909 0.00 0.00 0.00 3.46
43 44 4.574892 TGTTTAGCTCCACATCATTTCGA 58.425 39.130 0.00 0.00 0.00 3.71
44 45 5.185454 TGTTTAGCTCCACATCATTTCGAT 58.815 37.500 0.00 0.00 33.27 3.59
52 53 2.768833 CATCATTTCGATGGGTGCAG 57.231 50.000 0.00 0.00 46.73 4.41
53 54 2.291365 CATCATTTCGATGGGTGCAGA 58.709 47.619 0.00 0.00 46.73 4.26
54 55 2.488204 TCATTTCGATGGGTGCAGAA 57.512 45.000 0.00 0.00 0.00 3.02
55 56 2.083774 TCATTTCGATGGGTGCAGAAC 58.916 47.619 0.00 0.00 0.00 3.01
56 57 1.811965 CATTTCGATGGGTGCAGAACA 59.188 47.619 0.00 0.00 0.00 3.18
57 58 2.198827 TTTCGATGGGTGCAGAACAT 57.801 45.000 0.00 0.00 0.00 2.71
58 59 1.452110 TTCGATGGGTGCAGAACATG 58.548 50.000 2.75 0.00 0.00 3.21
59 60 0.612744 TCGATGGGTGCAGAACATGA 59.387 50.000 0.00 0.00 0.00 3.07
60 61 0.729116 CGATGGGTGCAGAACATGAC 59.271 55.000 0.00 0.00 0.00 3.06
61 62 1.825090 GATGGGTGCAGAACATGACA 58.175 50.000 0.00 0.00 0.00 3.58
62 63 2.372264 GATGGGTGCAGAACATGACAT 58.628 47.619 0.00 0.00 0.00 3.06
63 64 3.544684 GATGGGTGCAGAACATGACATA 58.455 45.455 0.00 0.00 0.00 2.29
64 65 3.650281 TGGGTGCAGAACATGACATAT 57.350 42.857 0.00 0.00 0.00 1.78
65 66 4.769345 TGGGTGCAGAACATGACATATA 57.231 40.909 0.00 0.00 0.00 0.86
66 67 5.109500 TGGGTGCAGAACATGACATATAA 57.891 39.130 0.00 0.00 0.00 0.98
67 68 4.881273 TGGGTGCAGAACATGACATATAAC 59.119 41.667 0.00 0.00 0.00 1.89
68 69 4.024893 GGGTGCAGAACATGACATATAACG 60.025 45.833 0.00 0.00 0.00 3.18
69 70 4.024893 GGTGCAGAACATGACATATAACGG 60.025 45.833 0.00 0.00 0.00 4.44
70 71 3.559655 TGCAGAACATGACATATAACGGC 59.440 43.478 0.00 0.00 0.00 5.68
71 72 3.362986 GCAGAACATGACATATAACGGCG 60.363 47.826 4.80 4.80 0.00 6.46
72 73 3.184379 CAGAACATGACATATAACGGCGG 59.816 47.826 13.24 0.00 0.00 6.13
73 74 2.163818 ACATGACATATAACGGCGGG 57.836 50.000 13.24 0.00 0.00 6.13
74 75 1.689813 ACATGACATATAACGGCGGGA 59.310 47.619 13.24 0.00 0.00 5.14
75 76 2.288825 ACATGACATATAACGGCGGGAG 60.289 50.000 13.24 0.00 0.00 4.30
76 77 0.677288 TGACATATAACGGCGGGAGG 59.323 55.000 13.24 0.00 0.00 4.30
77 78 0.037605 GACATATAACGGCGGGAGGG 60.038 60.000 13.24 0.00 0.00 4.30
78 79 0.761702 ACATATAACGGCGGGAGGGT 60.762 55.000 13.24 0.00 0.00 4.34
79 80 0.320421 CATATAACGGCGGGAGGGTG 60.320 60.000 13.24 0.00 0.00 4.61
80 81 0.470456 ATATAACGGCGGGAGGGTGA 60.470 55.000 13.24 0.00 0.00 4.02
81 82 0.470456 TATAACGGCGGGAGGGTGAT 60.470 55.000 13.24 0.00 0.00 3.06
82 83 1.342672 ATAACGGCGGGAGGGTGATT 61.343 55.000 13.24 0.00 0.00 2.57
83 84 1.555477 TAACGGCGGGAGGGTGATTT 61.555 55.000 13.24 0.00 0.00 2.17
84 85 2.513897 CGGCGGGAGGGTGATTTC 60.514 66.667 0.00 0.00 0.00 2.17
85 86 2.124278 GGCGGGAGGGTGATTTCC 60.124 66.667 0.00 0.00 0.00 3.13
86 87 2.680370 GGCGGGAGGGTGATTTCCT 61.680 63.158 0.00 0.00 37.33 3.36
87 88 1.342672 GGCGGGAGGGTGATTTCCTA 61.343 60.000 0.00 0.00 34.21 2.94
88 89 0.106894 GCGGGAGGGTGATTTCCTAG 59.893 60.000 0.00 0.00 34.21 3.02
89 90 1.789523 CGGGAGGGTGATTTCCTAGA 58.210 55.000 0.00 0.00 34.21 2.43
90 91 2.330216 CGGGAGGGTGATTTCCTAGAT 58.670 52.381 0.00 0.00 34.21 1.98
91 92 2.706190 CGGGAGGGTGATTTCCTAGATT 59.294 50.000 0.00 0.00 34.21 2.40
92 93 3.495100 CGGGAGGGTGATTTCCTAGATTG 60.495 52.174 0.00 0.00 34.21 2.67
93 94 3.481453 GGAGGGTGATTTCCTAGATTGC 58.519 50.000 0.00 0.00 34.21 3.56
94 95 3.481453 GAGGGTGATTTCCTAGATTGCC 58.519 50.000 0.00 0.00 34.21 4.52
95 96 2.175715 AGGGTGATTTCCTAGATTGCCC 59.824 50.000 0.00 0.00 31.86 5.36
96 97 2.091885 GGGTGATTTCCTAGATTGCCCA 60.092 50.000 0.00 0.00 34.03 5.36
97 98 3.217626 GGTGATTTCCTAGATTGCCCAG 58.782 50.000 0.00 0.00 0.00 4.45
98 99 3.117888 GGTGATTTCCTAGATTGCCCAGA 60.118 47.826 0.00 0.00 0.00 3.86
99 100 4.446889 GGTGATTTCCTAGATTGCCCAGAT 60.447 45.833 0.00 0.00 0.00 2.90
100 101 4.518211 GTGATTTCCTAGATTGCCCAGATG 59.482 45.833 0.00 0.00 0.00 2.90
101 102 2.645838 TTCCTAGATTGCCCAGATGC 57.354 50.000 0.00 0.00 0.00 3.91
102 103 1.510492 TCCTAGATTGCCCAGATGCA 58.490 50.000 0.00 0.00 40.07 3.96
111 112 3.591196 TGCCCAGATGCAAATAACAAC 57.409 42.857 0.00 0.00 38.56 3.32
112 113 2.896044 TGCCCAGATGCAAATAACAACA 59.104 40.909 0.00 0.00 38.56 3.33
113 114 3.323115 TGCCCAGATGCAAATAACAACAA 59.677 39.130 0.00 0.00 38.56 2.83
114 115 4.020396 TGCCCAGATGCAAATAACAACAAT 60.020 37.500 0.00 0.00 38.56 2.71
115 116 4.567959 GCCCAGATGCAAATAACAACAATC 59.432 41.667 0.00 0.00 0.00 2.67
116 117 4.799949 CCCAGATGCAAATAACAACAATCG 59.200 41.667 0.00 0.00 0.00 3.34
117 118 4.799949 CCAGATGCAAATAACAACAATCGG 59.200 41.667 0.00 0.00 0.00 4.18
118 119 5.401550 CAGATGCAAATAACAACAATCGGT 58.598 37.500 0.00 0.00 0.00 4.69
119 120 5.512788 CAGATGCAAATAACAACAATCGGTC 59.487 40.000 0.00 0.00 0.00 4.79
120 121 4.167554 TGCAAATAACAACAATCGGTCC 57.832 40.909 0.00 0.00 0.00 4.46
121 122 3.570125 TGCAAATAACAACAATCGGTCCA 59.430 39.130 0.00 0.00 0.00 4.02
122 123 4.219507 TGCAAATAACAACAATCGGTCCAT 59.780 37.500 0.00 0.00 0.00 3.41
123 124 4.562394 GCAAATAACAACAATCGGTCCATG 59.438 41.667 0.00 0.00 0.00 3.66
124 125 5.708948 CAAATAACAACAATCGGTCCATGT 58.291 37.500 0.00 0.00 0.00 3.21
125 126 5.975693 AATAACAACAATCGGTCCATGTT 57.024 34.783 0.00 0.00 37.76 2.71
139 140 3.969117 CCATGTTGATGGGTCGTAATG 57.031 47.619 0.00 0.00 45.11 1.90
140 141 3.278574 CCATGTTGATGGGTCGTAATGT 58.721 45.455 0.00 0.00 45.11 2.71
141 142 3.694072 CCATGTTGATGGGTCGTAATGTT 59.306 43.478 0.00 0.00 45.11 2.71
142 143 4.438608 CCATGTTGATGGGTCGTAATGTTG 60.439 45.833 0.00 0.00 45.11 3.33
143 144 3.078097 TGTTGATGGGTCGTAATGTTGG 58.922 45.455 0.00 0.00 0.00 3.77
144 145 3.078837 GTTGATGGGTCGTAATGTTGGT 58.921 45.455 0.00 0.00 0.00 3.67
145 146 2.705730 TGATGGGTCGTAATGTTGGTG 58.294 47.619 0.00 0.00 0.00 4.17
146 147 2.039216 TGATGGGTCGTAATGTTGGTGT 59.961 45.455 0.00 0.00 0.00 4.16
147 148 3.261137 TGATGGGTCGTAATGTTGGTGTA 59.739 43.478 0.00 0.00 0.00 2.90
148 149 3.766068 TGGGTCGTAATGTTGGTGTAA 57.234 42.857 0.00 0.00 0.00 2.41
149 150 3.666274 TGGGTCGTAATGTTGGTGTAAG 58.334 45.455 0.00 0.00 0.00 2.34
150 151 3.004862 GGGTCGTAATGTTGGTGTAAGG 58.995 50.000 0.00 0.00 0.00 2.69
151 152 3.306919 GGGTCGTAATGTTGGTGTAAGGA 60.307 47.826 0.00 0.00 0.00 3.36
152 153 3.930848 GGTCGTAATGTTGGTGTAAGGAG 59.069 47.826 0.00 0.00 0.00 3.69
153 154 3.930848 GTCGTAATGTTGGTGTAAGGAGG 59.069 47.826 0.00 0.00 0.00 4.30
154 155 2.676342 CGTAATGTTGGTGTAAGGAGGC 59.324 50.000 0.00 0.00 0.00 4.70
155 156 2.215942 AATGTTGGTGTAAGGAGGCC 57.784 50.000 0.00 0.00 0.00 5.19
156 157 0.331616 ATGTTGGTGTAAGGAGGCCC 59.668 55.000 0.00 0.00 0.00 5.80
157 158 1.063070 TGTTGGTGTAAGGAGGCCCA 61.063 55.000 0.00 0.00 33.88 5.36
158 159 0.331616 GTTGGTGTAAGGAGGCCCAT 59.668 55.000 0.00 0.00 33.88 4.00
159 160 0.331278 TTGGTGTAAGGAGGCCCATG 59.669 55.000 0.00 0.00 33.88 3.66
160 161 0.844661 TGGTGTAAGGAGGCCCATGT 60.845 55.000 0.00 0.00 33.88 3.21
161 162 0.331616 GGTGTAAGGAGGCCCATGTT 59.668 55.000 0.00 0.00 33.88 2.71
162 163 1.463674 GTGTAAGGAGGCCCATGTTG 58.536 55.000 0.00 0.00 33.88 3.33
163 164 1.004277 GTGTAAGGAGGCCCATGTTGA 59.996 52.381 0.00 0.00 33.88 3.18
164 165 1.922447 TGTAAGGAGGCCCATGTTGAT 59.078 47.619 0.00 0.00 33.88 2.57
165 166 2.301346 GTAAGGAGGCCCATGTTGATG 58.699 52.381 0.00 0.00 33.88 3.07
166 167 0.706433 AAGGAGGCCCATGTTGATGT 59.294 50.000 0.00 0.00 33.88 3.06
167 168 0.706433 AGGAGGCCCATGTTGATGTT 59.294 50.000 0.00 0.00 33.88 2.71
168 169 0.819582 GGAGGCCCATGTTGATGTTG 59.180 55.000 0.00 0.00 0.00 3.33
169 170 1.549203 GAGGCCCATGTTGATGTTGT 58.451 50.000 0.00 0.00 0.00 3.32
170 171 1.203052 GAGGCCCATGTTGATGTTGTG 59.797 52.381 0.00 0.00 0.00 3.33
171 172 1.203038 AGGCCCATGTTGATGTTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
172 173 1.826720 GGCCCATGTTGATGTTGTGAT 59.173 47.619 0.00 0.00 0.00 3.06
173 174 2.417651 GGCCCATGTTGATGTTGTGATG 60.418 50.000 0.00 0.00 0.00 3.07
174 175 2.492881 GCCCATGTTGATGTTGTGATGA 59.507 45.455 0.00 0.00 0.00 2.92
175 176 3.674138 GCCCATGTTGATGTTGTGATGAC 60.674 47.826 0.00 0.00 0.00 3.06
176 177 3.119388 CCCATGTTGATGTTGTGATGACC 60.119 47.826 0.00 0.00 0.00 4.02
177 178 3.506844 CCATGTTGATGTTGTGATGACCA 59.493 43.478 0.00 0.00 0.00 4.02
178 179 4.022155 CCATGTTGATGTTGTGATGACCAA 60.022 41.667 0.00 0.00 0.00 3.67
179 180 5.336929 CCATGTTGATGTTGTGATGACCAAT 60.337 40.000 0.00 0.00 0.00 3.16
180 181 5.123805 TGTTGATGTTGTGATGACCAATG 57.876 39.130 0.00 0.00 0.00 2.82
181 182 4.583907 TGTTGATGTTGTGATGACCAATGT 59.416 37.500 0.00 0.00 0.00 2.71
182 183 4.769859 TGATGTTGTGATGACCAATGTG 57.230 40.909 0.00 0.00 0.00 3.21
183 184 4.143543 TGATGTTGTGATGACCAATGTGT 58.856 39.130 0.00 0.00 0.00 3.72
184 185 5.312079 TGATGTTGTGATGACCAATGTGTA 58.688 37.500 0.00 0.00 0.00 2.90
185 186 5.767168 TGATGTTGTGATGACCAATGTGTAA 59.233 36.000 0.00 0.00 0.00 2.41
186 187 5.687770 TGTTGTGATGACCAATGTGTAAG 57.312 39.130 0.00 0.00 0.00 2.34
187 188 4.518590 TGTTGTGATGACCAATGTGTAAGG 59.481 41.667 0.00 0.00 0.00 2.69
188 189 3.684908 TGTGATGACCAATGTGTAAGGG 58.315 45.455 0.00 0.00 0.00 3.95
189 190 3.016736 GTGATGACCAATGTGTAAGGGG 58.983 50.000 0.00 0.00 0.00 4.79
190 191 2.025416 TGATGACCAATGTGTAAGGGGG 60.025 50.000 0.00 0.00 0.00 5.40
191 192 1.451449 TGACCAATGTGTAAGGGGGT 58.549 50.000 0.00 0.00 0.00 4.95
192 193 1.783979 TGACCAATGTGTAAGGGGGTT 59.216 47.619 0.00 0.00 0.00 4.11
193 194 2.178106 TGACCAATGTGTAAGGGGGTTT 59.822 45.455 0.00 0.00 0.00 3.27
194 195 3.236047 GACCAATGTGTAAGGGGGTTTT 58.764 45.455 0.00 0.00 0.00 2.43
195 196 4.140994 TGACCAATGTGTAAGGGGGTTTTA 60.141 41.667 0.00 0.00 0.00 1.52
196 197 5.018374 ACCAATGTGTAAGGGGGTTTTAT 57.982 39.130 0.00 0.00 0.00 1.40
197 198 5.020795 ACCAATGTGTAAGGGGGTTTTATC 58.979 41.667 0.00 0.00 0.00 1.75
198 199 4.404394 CCAATGTGTAAGGGGGTTTTATCC 59.596 45.833 0.00 0.00 0.00 2.59
199 200 3.353370 TGTGTAAGGGGGTTTTATCCG 57.647 47.619 0.00 0.00 0.00 4.18
200 201 2.911636 TGTGTAAGGGGGTTTTATCCGA 59.088 45.455 0.00 0.00 0.00 4.55
201 202 3.273434 GTGTAAGGGGGTTTTATCCGAC 58.727 50.000 0.00 0.00 0.00 4.79
202 203 2.911636 TGTAAGGGGGTTTTATCCGACA 59.088 45.455 0.00 0.00 0.00 4.35
203 204 3.524380 TGTAAGGGGGTTTTATCCGACAT 59.476 43.478 0.00 0.00 0.00 3.06
204 205 4.720773 TGTAAGGGGGTTTTATCCGACATA 59.279 41.667 0.00 0.00 0.00 2.29
205 206 4.432980 AAGGGGGTTTTATCCGACATAG 57.567 45.455 0.00 0.00 0.00 2.23
206 207 2.709397 AGGGGGTTTTATCCGACATAGG 59.291 50.000 0.00 0.00 0.00 2.57
207 208 2.501261 GGGGTTTTATCCGACATAGGC 58.499 52.381 0.00 0.00 0.00 3.93
208 209 2.105993 GGGGTTTTATCCGACATAGGCT 59.894 50.000 0.00 0.00 0.00 4.58
209 210 3.400255 GGGTTTTATCCGACATAGGCTC 58.600 50.000 0.00 0.00 0.00 4.70
210 211 3.071167 GGGTTTTATCCGACATAGGCTCT 59.929 47.826 0.00 0.00 0.00 4.09
211 212 4.058817 GGTTTTATCCGACATAGGCTCTG 58.941 47.826 0.00 0.00 0.00 3.35
212 213 4.058817 GTTTTATCCGACATAGGCTCTGG 58.941 47.826 4.82 0.00 0.00 3.86
213 214 2.971901 TATCCGACATAGGCTCTGGA 57.028 50.000 4.82 0.63 0.00 3.86
214 215 2.317371 ATCCGACATAGGCTCTGGAT 57.683 50.000 4.82 2.93 0.00 3.41
215 216 1.332195 TCCGACATAGGCTCTGGATG 58.668 55.000 4.82 0.00 0.00 3.51
216 217 0.319728 CCGACATAGGCTCTGGATGG 59.680 60.000 4.82 0.00 0.00 3.51
217 218 1.043816 CGACATAGGCTCTGGATGGT 58.956 55.000 4.82 0.00 0.00 3.55
218 219 1.269988 CGACATAGGCTCTGGATGGTG 60.270 57.143 4.82 0.00 0.00 4.17
219 220 0.471617 ACATAGGCTCTGGATGGTGC 59.528 55.000 4.82 0.00 0.00 5.01
220 221 0.471191 CATAGGCTCTGGATGGTGCA 59.529 55.000 0.00 0.00 0.00 4.57
221 222 0.763652 ATAGGCTCTGGATGGTGCAG 59.236 55.000 0.00 0.00 37.15 4.41
222 223 0.325577 TAGGCTCTGGATGGTGCAGA 60.326 55.000 0.00 1.29 42.67 4.26
225 226 2.580815 TCTGGATGGTGCAGAGCG 59.419 61.111 0.00 0.00 39.98 5.03
226 227 3.200593 CTGGATGGTGCAGAGCGC 61.201 66.667 0.00 0.00 38.14 5.92
233 234 3.854459 GTGCAGAGCGCGGCTTAC 61.854 66.667 19.48 10.96 46.97 2.34
236 237 2.887568 CAGAGCGCGGCTTACCAG 60.888 66.667 8.83 0.00 39.88 4.00
237 238 4.148825 AGAGCGCGGCTTACCAGG 62.149 66.667 8.83 0.00 39.88 4.45
240 241 4.151582 GCGCGGCTTACCAGGGTA 62.152 66.667 8.83 0.00 34.57 3.69
241 242 2.580276 CGCGGCTTACCAGGGTAA 59.420 61.111 10.33 10.33 38.14 2.85
242 243 1.812507 CGCGGCTTACCAGGGTAAC 60.813 63.158 6.82 4.93 35.88 2.50
243 244 1.297364 GCGGCTTACCAGGGTAACA 59.703 57.895 6.82 0.00 35.88 2.41
244 245 0.743345 GCGGCTTACCAGGGTAACAG 60.743 60.000 6.82 6.68 35.88 3.16
245 246 0.611714 CGGCTTACCAGGGTAACAGT 59.388 55.000 6.82 0.00 35.88 3.55
246 247 1.002773 CGGCTTACCAGGGTAACAGTT 59.997 52.381 6.82 0.00 35.88 3.16
247 248 2.708051 GGCTTACCAGGGTAACAGTTC 58.292 52.381 6.82 0.00 35.88 3.01
248 249 2.617276 GGCTTACCAGGGTAACAGTTCC 60.617 54.545 6.82 1.26 35.88 3.62
249 250 2.617276 GCTTACCAGGGTAACAGTTCCC 60.617 54.545 6.82 11.15 43.71 3.97
256 257 2.987232 GGGTAACAGTTCCCTTGCTAG 58.013 52.381 11.63 0.00 40.48 3.42
257 258 2.357075 GGTAACAGTTCCCTTGCTAGC 58.643 52.381 8.10 8.10 0.00 3.42
258 259 2.290071 GGTAACAGTTCCCTTGCTAGCA 60.290 50.000 14.93 14.93 0.00 3.49
259 260 2.191128 AACAGTTCCCTTGCTAGCAG 57.809 50.000 18.45 11.87 0.00 4.24
260 261 0.326264 ACAGTTCCCTTGCTAGCAGG 59.674 55.000 19.39 19.39 0.00 4.85
261 262 0.326264 CAGTTCCCTTGCTAGCAGGT 59.674 55.000 23.58 3.67 0.00 4.00
262 263 1.068121 AGTTCCCTTGCTAGCAGGTT 58.932 50.000 23.58 8.38 0.00 3.50
263 264 2.027192 CAGTTCCCTTGCTAGCAGGTTA 60.027 50.000 23.58 9.79 0.00 2.85
264 265 2.237392 AGTTCCCTTGCTAGCAGGTTAG 59.763 50.000 23.58 15.40 0.00 2.34
265 266 1.952621 TCCCTTGCTAGCAGGTTAGT 58.047 50.000 23.58 0.00 0.00 2.24
266 267 1.831736 TCCCTTGCTAGCAGGTTAGTC 59.168 52.381 23.58 0.00 0.00 2.59
267 268 1.834263 CCCTTGCTAGCAGGTTAGTCT 59.166 52.381 23.58 0.00 0.00 3.24
268 269 2.237392 CCCTTGCTAGCAGGTTAGTCTT 59.763 50.000 23.58 0.00 0.00 3.01
269 270 3.307762 CCCTTGCTAGCAGGTTAGTCTTT 60.308 47.826 23.58 0.00 0.00 2.52
270 271 4.327680 CCTTGCTAGCAGGTTAGTCTTTT 58.672 43.478 23.58 0.00 0.00 2.27
271 272 5.488341 CCTTGCTAGCAGGTTAGTCTTTTA 58.512 41.667 23.58 1.60 0.00 1.52
272 273 6.116126 CCTTGCTAGCAGGTTAGTCTTTTAT 58.884 40.000 23.58 0.00 0.00 1.40
273 274 6.037610 CCTTGCTAGCAGGTTAGTCTTTTATG 59.962 42.308 23.58 1.79 0.00 1.90
274 275 5.428253 TGCTAGCAGGTTAGTCTTTTATGG 58.572 41.667 14.93 0.00 0.00 2.74
275 276 5.188948 TGCTAGCAGGTTAGTCTTTTATGGA 59.811 40.000 14.93 0.00 0.00 3.41
276 277 6.113411 GCTAGCAGGTTAGTCTTTTATGGAA 58.887 40.000 10.63 0.00 0.00 3.53
277 278 6.037281 GCTAGCAGGTTAGTCTTTTATGGAAC 59.963 42.308 10.63 0.00 0.00 3.62
296 297 7.921786 TGGAACATGACTTCTTATAAGGTTG 57.078 36.000 12.54 5.84 0.00 3.77
297 298 7.458397 TGGAACATGACTTCTTATAAGGTTGT 58.542 34.615 12.54 8.72 0.00 3.32
298 299 7.942341 TGGAACATGACTTCTTATAAGGTTGTT 59.058 33.333 12.54 10.81 0.00 2.83
299 300 8.451748 GGAACATGACTTCTTATAAGGTTGTTC 58.548 37.037 19.05 19.05 38.81 3.18
300 301 9.220767 GAACATGACTTCTTATAAGGTTGTTCT 57.779 33.333 19.49 7.12 37.38 3.01
302 303 9.654663 ACATGACTTCTTATAAGGTTGTTCTAC 57.345 33.333 12.54 0.00 0.00 2.59
303 304 9.877178 CATGACTTCTTATAAGGTTGTTCTACT 57.123 33.333 12.54 0.00 0.00 2.57
314 315 9.886132 ATAAGGTTGTTCTACTAACAGTATTGG 57.114 33.333 0.00 0.00 29.08 3.16
315 316 6.171213 AGGTTGTTCTACTAACAGTATTGGC 58.829 40.000 0.00 0.00 29.08 4.52
316 317 5.935789 GGTTGTTCTACTAACAGTATTGGCA 59.064 40.000 0.00 0.00 29.08 4.92
317 318 6.598064 GGTTGTTCTACTAACAGTATTGGCAT 59.402 38.462 0.00 0.00 29.08 4.40
318 319 7.201617 GGTTGTTCTACTAACAGTATTGGCATC 60.202 40.741 0.00 0.00 29.08 3.91
319 320 6.040247 TGTTCTACTAACAGTATTGGCATCG 58.960 40.000 0.00 0.00 29.08 3.84
320 321 5.847111 TCTACTAACAGTATTGGCATCGT 57.153 39.130 0.00 0.00 29.08 3.73
321 322 6.947644 TCTACTAACAGTATTGGCATCGTA 57.052 37.500 0.00 0.00 29.08 3.43
322 323 7.520451 TCTACTAACAGTATTGGCATCGTAT 57.480 36.000 0.00 0.00 29.08 3.06
323 324 7.948357 TCTACTAACAGTATTGGCATCGTATT 58.052 34.615 0.00 0.00 29.08 1.89
324 325 8.418662 TCTACTAACAGTATTGGCATCGTATTT 58.581 33.333 0.00 0.00 29.08 1.40
325 326 7.859325 ACTAACAGTATTGGCATCGTATTTT 57.141 32.000 0.00 0.00 0.00 1.82
326 327 8.276252 ACTAACAGTATTGGCATCGTATTTTT 57.724 30.769 0.00 0.00 0.00 1.94
346 347 4.748277 TTTTTATGTCCTACTCCCTCCG 57.252 45.455 0.00 0.00 0.00 4.63
347 348 3.393426 TTTATGTCCTACTCCCTCCGT 57.607 47.619 0.00 0.00 0.00 4.69
348 349 3.393426 TTATGTCCTACTCCCTCCGTT 57.607 47.619 0.00 0.00 0.00 4.44
349 350 1.777941 ATGTCCTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
350 351 0.406750 TGTCCTACTCCCTCCGTTCA 59.593 55.000 0.00 0.00 0.00 3.18
351 352 0.816373 GTCCTACTCCCTCCGTTCAC 59.184 60.000 0.00 0.00 0.00 3.18
352 353 0.406750 TCCTACTCCCTCCGTTCACA 59.593 55.000 0.00 0.00 0.00 3.58
353 354 1.203087 TCCTACTCCCTCCGTTCACAA 60.203 52.381 0.00 0.00 0.00 3.33
354 355 1.621814 CCTACTCCCTCCGTTCACAAA 59.378 52.381 0.00 0.00 0.00 2.83
355 356 2.236395 CCTACTCCCTCCGTTCACAAAT 59.764 50.000 0.00 0.00 0.00 2.32
356 357 3.449737 CCTACTCCCTCCGTTCACAAATA 59.550 47.826 0.00 0.00 0.00 1.40
357 358 4.101119 CCTACTCCCTCCGTTCACAAATAT 59.899 45.833 0.00 0.00 0.00 1.28
358 359 5.303589 CCTACTCCCTCCGTTCACAAATATA 59.696 44.000 0.00 0.00 0.00 0.86
359 360 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
360 361 6.248569 ACTCCCTCCGTTCACAAATATAAT 57.751 37.500 0.00 0.00 0.00 1.28
361 362 7.369551 ACTCCCTCCGTTCACAAATATAATA 57.630 36.000 0.00 0.00 0.00 0.98
362 363 7.974504 ACTCCCTCCGTTCACAAATATAATAT 58.025 34.615 0.00 0.00 0.00 1.28
363 364 9.096823 ACTCCCTCCGTTCACAAATATAATATA 57.903 33.333 0.00 0.00 0.00 0.86
407 408 9.537192 TGGACTACATACGGATTAAATTAAGTG 57.463 33.333 0.00 0.00 0.00 3.16
408 409 9.754382 GGACTACATACGGATTAAATTAAGTGA 57.246 33.333 0.00 0.00 0.00 3.41
427 428 9.705471 TTAAGTGAACAAACATACTAAAACGTG 57.295 29.630 0.00 0.00 0.00 4.49
428 429 7.311364 AGTGAACAAACATACTAAAACGTGT 57.689 32.000 0.00 0.00 0.00 4.49
429 430 8.422973 AGTGAACAAACATACTAAAACGTGTA 57.577 30.769 0.00 0.00 0.00 2.90
430 431 9.048446 AGTGAACAAACATACTAAAACGTGTAT 57.952 29.630 0.00 0.00 0.00 2.29
483 484 9.946165 GAACATCTTATATTTTTAAACGGAGGG 57.054 33.333 0.00 0.00 0.00 4.30
484 485 9.689501 AACATCTTATATTTTTAAACGGAGGGA 57.310 29.630 0.00 0.00 0.00 4.20
485 486 9.338622 ACATCTTATATTTTTAAACGGAGGGAG 57.661 33.333 0.00 0.00 0.00 4.30
486 487 9.338622 CATCTTATATTTTTAAACGGAGGGAGT 57.661 33.333 0.00 0.00 0.00 3.85
502 503 8.491958 ACGGAGGGAGTATAATTTAGAAACATT 58.508 33.333 0.00 0.00 0.00 2.71
515 516 4.228912 AGAAACATTACAACTGTGCAGC 57.771 40.909 0.00 0.00 0.00 5.25
527 528 1.980772 GTGCAGCATTCCAGCCCTT 60.981 57.895 0.00 0.00 34.23 3.95
529 530 2.768492 GCAGCATTCCAGCCCTTCG 61.768 63.158 0.00 0.00 34.23 3.79
532 533 0.038166 AGCATTCCAGCCCTTCGAAA 59.962 50.000 0.00 0.00 34.23 3.46
542 543 1.164041 CCCTTCGAAACCACTTGCGT 61.164 55.000 0.00 0.00 0.00 5.24
546 547 2.461897 TCGAAACCACTTGCGTTTTC 57.538 45.000 0.00 0.00 33.65 2.29
548 549 1.530236 CGAAACCACTTGCGTTTTCGT 60.530 47.619 7.06 0.00 46.03 3.85
555 556 1.064952 ACTTGCGTTTTCGTCCTTTGG 59.935 47.619 0.00 0.00 46.03 3.28
573 576 1.152649 GGATGTCCTCCCAATCCCAT 58.847 55.000 0.00 0.00 38.19 4.00
577 580 1.010046 TGTCCTCCCAATCCCATCTCT 59.990 52.381 0.00 0.00 0.00 3.10
586 589 1.047002 ATCCCATCTCTGCTTCCTCG 58.953 55.000 0.00 0.00 0.00 4.63
598 601 0.032678 CTTCCTCGGATGACCATCGG 59.967 60.000 10.23 10.23 38.69 4.18
617 620 2.289444 CGGGTGGTATACATGATGGGTC 60.289 54.545 5.01 0.00 0.00 4.46
627 630 1.464376 ATGATGGGTCGCTACTCCGG 61.464 60.000 0.00 0.00 0.00 5.14
628 631 3.501458 GATGGGTCGCTACTCCGGC 62.501 68.421 0.00 0.00 0.00 6.13
630 633 4.208686 GGGTCGCTACTCCGGCAG 62.209 72.222 0.00 0.00 33.83 4.85
631 634 4.874977 GGTCGCTACTCCGGCAGC 62.875 72.222 11.29 11.29 33.83 5.25
633 636 3.826754 TCGCTACTCCGGCAGCAG 61.827 66.667 18.64 12.70 37.66 4.24
634 637 4.880537 CGCTACTCCGGCAGCAGG 62.881 72.222 18.64 4.96 37.66 4.85
635 638 3.775654 GCTACTCCGGCAGCAGGT 61.776 66.667 11.77 0.00 37.73 4.00
636 639 2.185350 CTACTCCGGCAGCAGGTG 59.815 66.667 11.77 11.69 0.00 4.00
637 640 3.376935 CTACTCCGGCAGCAGGTGG 62.377 68.421 16.68 11.04 0.00 4.61
638 641 3.897681 TACTCCGGCAGCAGGTGGA 62.898 63.158 16.68 6.53 0.00 4.02
640 643 3.746949 CTCCGGCAGCAGGTGGATC 62.747 68.421 11.77 0.00 0.00 3.36
641 644 4.100084 CCGGCAGCAGGTGGATCA 62.100 66.667 2.85 0.00 0.00 2.92
642 645 2.191375 CGGCAGCAGGTGGATCAT 59.809 61.111 0.86 0.00 0.00 2.45
643 646 1.447217 CGGCAGCAGGTGGATCATA 59.553 57.895 0.86 0.00 0.00 2.15
649 659 3.499918 GCAGCAGGTGGATCATACATAAC 59.500 47.826 0.86 0.00 0.00 1.89
650 660 4.707105 CAGCAGGTGGATCATACATAACA 58.293 43.478 0.00 0.00 0.00 2.41
651 661 5.125356 CAGCAGGTGGATCATACATAACAA 58.875 41.667 0.00 0.00 0.00 2.83
655 665 6.294176 GCAGGTGGATCATACATAACAAATCC 60.294 42.308 0.00 0.00 34.54 3.01
657 667 7.173907 CAGGTGGATCATACATAACAAATCCTC 59.826 40.741 0.00 0.00 34.93 3.71
664 674 3.805207 ACATAACAAATCCTCGGTAGGC 58.195 45.455 0.00 0.00 43.31 3.93
713 796 8.862325 ACCACACATAAACTTCATTGATCTTA 57.138 30.769 0.00 0.00 0.00 2.10
743 826 7.390718 TGTTAAATTCTAGTCTTCTCCTTTGGC 59.609 37.037 0.00 0.00 0.00 4.52
783 866 6.095440 AGTCATATTCACAACACAATTAGCCC 59.905 38.462 0.00 0.00 0.00 5.19
797 880 8.328014 ACACAATTAGCCCCAAATTCAAATAAT 58.672 29.630 0.00 0.00 0.00 1.28
819 902 2.547007 CCACACATACGGTCAGTCACAA 60.547 50.000 0.00 0.00 0.00 3.33
854 937 1.268999 TGCGCTTAAACACTTGCAAGG 60.269 47.619 29.18 19.84 0.00 3.61
874 1167 6.264067 GCAAGGCTGGATAGATAAACAATTCT 59.736 38.462 0.00 0.00 0.00 2.40
895 1188 2.032799 TCTTTTGCACCTAAACACGCTG 59.967 45.455 0.00 0.00 0.00 5.18
898 1191 2.465860 TGCACCTAAACACGCTGTAT 57.534 45.000 0.00 0.00 0.00 2.29
900 1193 3.517602 TGCACCTAAACACGCTGTATAG 58.482 45.455 0.00 0.00 0.00 1.31
902 1195 4.142026 TGCACCTAAACACGCTGTATAGAT 60.142 41.667 0.00 0.00 0.00 1.98
903 1196 5.068067 TGCACCTAAACACGCTGTATAGATA 59.932 40.000 0.00 0.00 0.00 1.98
906 1199 6.856938 CACCTAAACACGCTGTATAGATACTC 59.143 42.308 1.60 0.00 34.41 2.59
907 1200 6.016443 ACCTAAACACGCTGTATAGATACTCC 60.016 42.308 1.60 0.00 34.41 3.85
929 1222 1.200716 CAGTCGACAGGCATTTGCATT 59.799 47.619 19.50 0.00 44.36 3.56
930 1223 2.419673 CAGTCGACAGGCATTTGCATTA 59.580 45.455 19.50 0.00 44.36 1.90
931 1224 2.420022 AGTCGACAGGCATTTGCATTAC 59.580 45.455 19.50 0.00 44.36 1.89
932 1225 2.161410 GTCGACAGGCATTTGCATTACA 59.839 45.455 11.55 0.00 44.36 2.41
933 1226 2.419673 TCGACAGGCATTTGCATTACAG 59.580 45.455 4.74 0.00 44.36 2.74
1068 1361 0.457851 CACATCGTCTCCACCTCCTC 59.542 60.000 0.00 0.00 0.00 3.71
1277 1570 2.125106 GACATCACCACGGCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
1782 2295 6.481984 GCAGTAGCATATTGTTGTTTCTCTC 58.518 40.000 0.00 0.00 41.58 3.20
1785 2298 3.375299 AGCATATTGTTGTTTCTCTCCGC 59.625 43.478 0.00 0.00 0.00 5.54
1786 2299 3.785505 GCATATTGTTGTTTCTCTCCGCG 60.786 47.826 0.00 0.00 0.00 6.46
1788 2301 1.827315 TTGTTGTTTCTCTCCGCGCG 61.827 55.000 25.67 25.67 0.00 6.86
1794 2307 1.940883 TTTCTCTCCGCGCGTACCAT 61.941 55.000 29.95 0.00 0.00 3.55
1978 2506 7.014518 TCCATGCTGATTTTCCAAGGTATAATG 59.985 37.037 0.00 0.00 0.00 1.90
1982 2510 7.559533 TGCTGATTTTCCAAGGTATAATGCTTA 59.440 33.333 0.00 0.00 0.00 3.09
2001 2529 9.822185 AATGCTTAATTTGATGGACTTTTATCC 57.178 29.630 0.00 0.00 39.45 2.59
2174 2892 5.521906 TCTGTGTATCCTTAGATGCAGAC 57.478 43.478 0.00 0.00 44.50 3.51
2177 2895 2.959030 TGTATCCTTAGATGCAGACGCT 59.041 45.455 0.00 0.00 39.81 5.07
2240 3194 8.959676 TTTTACCTAATTTAACCCACATCCTT 57.040 30.769 0.00 0.00 0.00 3.36
2242 3196 8.959676 TTACCTAATTTAACCCACATCCTTTT 57.040 30.769 0.00 0.00 0.00 2.27
2243 3197 7.476540 ACCTAATTTAACCCACATCCTTTTC 57.523 36.000 0.00 0.00 0.00 2.29
2244 3198 7.246027 ACCTAATTTAACCCACATCCTTTTCT 58.754 34.615 0.00 0.00 0.00 2.52
2246 3200 9.250246 CCTAATTTAACCCACATCCTTTTCTAA 57.750 33.333 0.00 0.00 0.00 2.10
2272 3226 6.599356 AAACCTAATTTAACCCACATGGAC 57.401 37.500 0.00 0.00 37.39 4.02
2274 3228 5.506708 ACCTAATTTAACCCACATGGACTC 58.493 41.667 0.00 0.00 37.39 3.36
2312 3386 1.472082 TGGAGCTGTGTTGTGTTGTTG 59.528 47.619 0.00 0.00 0.00 3.33
2653 5134 8.908678 CGAAAACATTTTCCATAGATGCATATG 58.091 33.333 3.54 3.16 42.66 1.78
2685 5166 4.668576 TCGATGACTCAACATGCTTTTC 57.331 40.909 0.00 0.00 0.00 2.29
2714 5197 0.039035 TATTGCAGAGGCCGGGTTTT 59.961 50.000 2.18 0.00 40.13 2.43
2743 5226 4.558697 CGGTGACTCGCCATCATTTATCTA 60.559 45.833 9.35 0.00 32.88 1.98
2753 5236 7.498900 TCGCCATCATTTATCTACAGTTTCAAT 59.501 33.333 0.00 0.00 0.00 2.57
2754 5237 8.131100 CGCCATCATTTATCTACAGTTTCAATT 58.869 33.333 0.00 0.00 0.00 2.32
2759 5242 8.826710 TCATTTATCTACAGTTTCAATTAGCGG 58.173 33.333 0.00 0.00 0.00 5.52
2829 5312 3.770046 TGCGGGTTATAGCCTCACTATA 58.230 45.455 5.52 0.00 41.91 1.31
2958 5966 6.140303 TCTATCGCCAGAAGTAATTTACGT 57.860 37.500 0.00 0.00 0.00 3.57
3312 6349 0.246635 GCTCTCTTCGGCTGTTGGTA 59.753 55.000 0.00 0.00 0.00 3.25
3449 6489 3.309121 GGGAGATGGAAATGGAGGTCAAA 60.309 47.826 0.00 0.00 0.00 2.69
3531 6724 7.800380 CAGTGTTTTAGCTAGATCAACTTGTTG 59.200 37.037 7.13 7.13 0.00 3.33
3532 6725 6.578919 GTGTTTTAGCTAGATCAACTTGTTGC 59.421 38.462 8.48 0.00 0.00 4.17
3554 6747 3.119884 CGCATGCAAACATCTACCTGAAA 60.120 43.478 19.57 0.00 32.87 2.69
3703 7273 3.265791 ACTTGAGCTTATTTCCTCGCAG 58.734 45.455 0.00 0.00 0.00 5.18
3772 7345 1.633852 GCTGTCTCTGAAGCTTGCGG 61.634 60.000 2.10 0.67 36.47 5.69
3775 7348 1.230324 GTCTCTGAAGCTTGCGGTTT 58.770 50.000 2.10 0.00 0.00 3.27
3776 7349 1.604278 GTCTCTGAAGCTTGCGGTTTT 59.396 47.619 2.10 0.00 0.00 2.43
3777 7350 2.033424 GTCTCTGAAGCTTGCGGTTTTT 59.967 45.455 2.10 0.00 0.00 1.94
3800 7373 5.585820 TTTTTGCGAGGGTAAAGAGTTTT 57.414 34.783 0.00 0.00 0.00 2.43
3801 7374 6.696441 TTTTTGCGAGGGTAAAGAGTTTTA 57.304 33.333 0.00 0.00 0.00 1.52
3802 7375 6.887626 TTTTGCGAGGGTAAAGAGTTTTAT 57.112 33.333 0.00 0.00 31.81 1.40
3803 7376 6.887626 TTTGCGAGGGTAAAGAGTTTTATT 57.112 33.333 0.00 0.00 31.81 1.40
3804 7377 6.490566 TTGCGAGGGTAAAGAGTTTTATTC 57.509 37.500 0.00 0.00 31.81 1.75
3805 7378 4.939439 TGCGAGGGTAAAGAGTTTTATTCC 59.061 41.667 0.00 0.00 31.81 3.01
3806 7379 4.939439 GCGAGGGTAAAGAGTTTTATTCCA 59.061 41.667 0.00 0.00 32.26 3.53
3807 7380 5.589050 GCGAGGGTAAAGAGTTTTATTCCAT 59.411 40.000 0.00 0.00 32.26 3.41
3808 7381 6.764560 GCGAGGGTAAAGAGTTTTATTCCATA 59.235 38.462 0.00 0.00 32.26 2.74
3809 7382 7.281549 GCGAGGGTAAAGAGTTTTATTCCATAA 59.718 37.037 0.00 0.00 32.26 1.90
3810 7383 8.827677 CGAGGGTAAAGAGTTTTATTCCATAAG 58.172 37.037 0.00 0.00 32.26 1.73
3811 7384 9.901172 GAGGGTAAAGAGTTTTATTCCATAAGA 57.099 33.333 0.00 0.00 32.26 2.10
3833 7406 8.641498 AAGAATAGGGTTATTGCTCCATATTG 57.359 34.615 5.97 0.00 39.64 1.90
3844 7417 9.797642 TTATTGCTCCATATTGTCATGTAAGAT 57.202 29.630 0.00 0.00 0.00 2.40
3847 7420 6.707608 TGCTCCATATTGTCATGTAAGATCAC 59.292 38.462 0.00 0.00 0.00 3.06
3903 7482 0.520404 TTCTAAGCTCGCGTTCGTCT 59.480 50.000 5.77 0.00 36.96 4.18
3909 7488 1.114047 GCTCGCGTTCGTCTATTCTC 58.886 55.000 5.77 0.00 36.96 2.87
3964 7545 3.821841 GGTAAATCACCTGCTGTTTTCG 58.178 45.455 0.00 0.00 44.79 3.46
3971 7552 3.886505 TCACCTGCTGTTTTCGGTAAAAT 59.113 39.130 0.00 0.00 36.96 1.82
4118 9466 2.365410 GGCAACTGCATTTCCCCTT 58.635 52.632 3.76 0.00 44.36 3.95
4121 9469 1.551883 GCAACTGCATTTCCCCTTGAT 59.448 47.619 0.00 0.00 41.59 2.57
4133 9482 2.180769 CTTGATCCGTCGACGCCA 59.819 61.111 31.73 23.60 38.18 5.69
4156 9505 1.151810 AGGTTCCCCTGCCTTCTGA 60.152 57.895 0.00 0.00 40.58 3.27
4165 9514 0.668706 CTGCCTTCTGACGACCACTG 60.669 60.000 0.00 0.00 0.00 3.66
4207 9556 6.937436 GGAACCTTGGATATATTTGTTCGT 57.063 37.500 0.00 0.00 33.28 3.85
4210 9559 9.063615 GGAACCTTGGATATATTTGTTCGTATT 57.936 33.333 0.00 0.00 33.28 1.89
4213 9562 9.052759 ACCTTGGATATATTTGTTCGTATTGTC 57.947 33.333 0.00 0.00 0.00 3.18
4262 9612 3.689649 GTCGATGAAGTTGGGTTAGCAAT 59.310 43.478 0.00 0.00 0.00 3.56
4264 9614 3.689161 CGATGAAGTTGGGTTAGCAATGA 59.311 43.478 0.00 0.00 0.00 2.57
4265 9615 4.336433 CGATGAAGTTGGGTTAGCAATGAT 59.664 41.667 0.00 0.00 0.00 2.45
4321 9671 1.976132 CTCATGGCAGGGGTGTCGAT 61.976 60.000 0.00 0.00 0.00 3.59
4349 9699 2.362169 TGTCAATCGTCGAGCATTCA 57.638 45.000 0.00 0.00 0.00 2.57
4358 9708 0.829990 TCGAGCATTCAGGTATGGCA 59.170 50.000 0.00 0.00 0.00 4.92
4365 9715 5.577100 AGCATTCAGGTATGGCATGATTAT 58.423 37.500 10.98 0.00 37.76 1.28
4366 9716 6.014647 AGCATTCAGGTATGGCATGATTATT 58.985 36.000 10.98 0.00 37.76 1.40
4376 9726 7.933033 GGTATGGCATGATTATTGTTTTTCCAT 59.067 33.333 10.98 0.00 35.15 3.41
4401 9751 3.942439 GCGTCCTATGGAGGGGGC 61.942 72.222 8.15 0.00 43.94 5.80
4402 9752 2.122813 CGTCCTATGGAGGGGGCT 60.123 66.667 0.00 0.00 43.94 5.19
4403 9753 2.511452 CGTCCTATGGAGGGGGCTG 61.511 68.421 0.00 0.00 43.94 4.85
4404 9754 2.150051 GTCCTATGGAGGGGGCTGG 61.150 68.421 0.00 0.00 43.94 4.85
4405 9755 2.856000 CCTATGGAGGGGGCTGGG 60.856 72.222 0.00 0.00 39.48 4.45
4406 9756 3.574237 CTATGGAGGGGGCTGGGC 61.574 72.222 0.00 0.00 0.00 5.36
4424 9774 1.810441 CGGGTAACGTTGCGGCATA 60.810 57.895 11.99 0.00 37.93 3.14
4447 9797 3.328382 TTTGTTCTCCACCAGATACGG 57.672 47.619 0.00 0.00 0.00 4.02
4477 9827 7.069331 TGTCAGGGAATTATGAAGTTTGTGTTT 59.931 33.333 0.00 0.00 0.00 2.83
4507 9857 5.127682 GCTGGAGATGGAATTATTGTTTGGT 59.872 40.000 0.00 0.00 0.00 3.67
4539 9889 2.870435 GCTAGCTTCTTTGGGACGACAA 60.870 50.000 7.70 0.00 0.00 3.18
4546 9897 2.432874 TCTTTGGGACGACAACTTCTCA 59.567 45.455 0.00 0.00 0.00 3.27
4562 9913 5.327732 ACTTCTCAAATCATGGTCACCAAT 58.672 37.500 0.00 0.00 36.95 3.16
4573 9924 2.371841 TGGTCACCAATGTCTGCTAGTT 59.628 45.455 0.00 0.00 0.00 2.24
4650 10002 4.327680 GTTGCTTTGGTAAGATGGAGACT 58.672 43.478 0.00 0.00 32.92 3.24
4683 10036 1.660607 CGAATATGCTCACAGCGTGTT 59.339 47.619 8.22 0.03 46.26 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.864360 AACAAGCCAAATTTGTACGTAGTA 57.136 33.333 16.73 0.00 45.11 1.82
3 4 6.304683 GCTAAACAAGCCAAATTTGTACGTAG 59.695 38.462 16.73 9.33 46.25 3.51
4 5 6.144175 GCTAAACAAGCCAAATTTGTACGTA 58.856 36.000 16.73 0.00 46.25 3.57
5 6 4.979815 GCTAAACAAGCCAAATTTGTACGT 59.020 37.500 16.73 5.82 46.25 3.57
18 19 9.480433 ATCGAAATGATGTGGAGCTAAACAAGC 62.480 40.741 5.14 2.35 43.40 4.01
19 20 5.122239 TCGAAATGATGTGGAGCTAAACAAG 59.878 40.000 5.14 0.00 0.00 3.16
20 21 5.000591 TCGAAATGATGTGGAGCTAAACAA 58.999 37.500 5.14 0.00 0.00 2.83
21 22 4.574892 TCGAAATGATGTGGAGCTAAACA 58.425 39.130 3.59 3.59 0.00 2.83
22 23 5.741388 ATCGAAATGATGTGGAGCTAAAC 57.259 39.130 0.00 0.00 35.45 2.01
34 35 2.684881 GTTCTGCACCCATCGAAATGAT 59.315 45.455 0.00 0.00 38.01 2.45
35 36 2.083774 GTTCTGCACCCATCGAAATGA 58.916 47.619 0.00 0.00 34.61 2.57
36 37 1.811965 TGTTCTGCACCCATCGAAATG 59.188 47.619 0.00 0.00 0.00 2.32
37 38 2.198827 TGTTCTGCACCCATCGAAAT 57.801 45.000 0.00 0.00 0.00 2.17
38 39 1.811965 CATGTTCTGCACCCATCGAAA 59.188 47.619 0.00 0.00 0.00 3.46
39 40 1.003003 TCATGTTCTGCACCCATCGAA 59.997 47.619 0.00 0.00 0.00 3.71
40 41 0.612744 TCATGTTCTGCACCCATCGA 59.387 50.000 0.00 0.00 0.00 3.59
41 42 0.729116 GTCATGTTCTGCACCCATCG 59.271 55.000 0.00 0.00 0.00 3.84
42 43 1.825090 TGTCATGTTCTGCACCCATC 58.175 50.000 0.00 0.00 0.00 3.51
43 44 2.519771 ATGTCATGTTCTGCACCCAT 57.480 45.000 0.00 0.00 0.00 4.00
44 45 3.650281 ATATGTCATGTTCTGCACCCA 57.350 42.857 0.00 0.00 0.00 4.51
45 46 4.024893 CGTTATATGTCATGTTCTGCACCC 60.025 45.833 0.00 0.00 0.00 4.61
46 47 4.024893 CCGTTATATGTCATGTTCTGCACC 60.025 45.833 0.00 0.00 0.00 5.01
47 48 4.552767 GCCGTTATATGTCATGTTCTGCAC 60.553 45.833 0.00 0.00 0.00 4.57
48 49 3.559655 GCCGTTATATGTCATGTTCTGCA 59.440 43.478 0.00 0.00 0.00 4.41
49 50 3.362986 CGCCGTTATATGTCATGTTCTGC 60.363 47.826 0.00 0.00 0.00 4.26
50 51 3.184379 CCGCCGTTATATGTCATGTTCTG 59.816 47.826 0.00 0.00 0.00 3.02
51 52 3.390135 CCGCCGTTATATGTCATGTTCT 58.610 45.455 0.00 0.00 0.00 3.01
52 53 2.478894 CCCGCCGTTATATGTCATGTTC 59.521 50.000 0.00 0.00 0.00 3.18
53 54 2.103432 TCCCGCCGTTATATGTCATGTT 59.897 45.455 0.00 0.00 0.00 2.71
54 55 1.689813 TCCCGCCGTTATATGTCATGT 59.310 47.619 0.00 0.00 0.00 3.21
55 56 2.337583 CTCCCGCCGTTATATGTCATG 58.662 52.381 0.00 0.00 0.00 3.07
56 57 1.275291 CCTCCCGCCGTTATATGTCAT 59.725 52.381 0.00 0.00 0.00 3.06
57 58 0.677288 CCTCCCGCCGTTATATGTCA 59.323 55.000 0.00 0.00 0.00 3.58
58 59 0.037605 CCCTCCCGCCGTTATATGTC 60.038 60.000 0.00 0.00 0.00 3.06
59 60 0.761702 ACCCTCCCGCCGTTATATGT 60.762 55.000 0.00 0.00 0.00 2.29
60 61 0.320421 CACCCTCCCGCCGTTATATG 60.320 60.000 0.00 0.00 0.00 1.78
61 62 0.470456 TCACCCTCCCGCCGTTATAT 60.470 55.000 0.00 0.00 0.00 0.86
62 63 0.470456 ATCACCCTCCCGCCGTTATA 60.470 55.000 0.00 0.00 0.00 0.98
63 64 1.342672 AATCACCCTCCCGCCGTTAT 61.343 55.000 0.00 0.00 0.00 1.89
64 65 1.555477 AAATCACCCTCCCGCCGTTA 61.555 55.000 0.00 0.00 0.00 3.18
65 66 2.814913 GAAATCACCCTCCCGCCGTT 62.815 60.000 0.00 0.00 0.00 4.44
66 67 3.325201 GAAATCACCCTCCCGCCGT 62.325 63.158 0.00 0.00 0.00 5.68
67 68 2.513897 GAAATCACCCTCCCGCCG 60.514 66.667 0.00 0.00 0.00 6.46
68 69 1.342672 TAGGAAATCACCCTCCCGCC 61.343 60.000 0.00 0.00 35.30 6.13
69 70 0.106894 CTAGGAAATCACCCTCCCGC 59.893 60.000 0.00 0.00 35.30 6.13
70 71 1.789523 TCTAGGAAATCACCCTCCCG 58.210 55.000 0.00 0.00 35.30 5.14
71 72 3.748989 GCAATCTAGGAAATCACCCTCCC 60.749 52.174 0.00 0.00 35.30 4.30
72 73 3.481453 GCAATCTAGGAAATCACCCTCC 58.519 50.000 0.00 0.00 35.30 4.30
73 74 3.481453 GGCAATCTAGGAAATCACCCTC 58.519 50.000 0.00 0.00 35.30 4.30
74 75 2.175715 GGGCAATCTAGGAAATCACCCT 59.824 50.000 0.00 0.00 37.80 4.34
75 76 2.091885 TGGGCAATCTAGGAAATCACCC 60.092 50.000 0.00 0.00 35.29 4.61
76 77 3.117888 TCTGGGCAATCTAGGAAATCACC 60.118 47.826 0.00 0.00 0.00 4.02
77 78 4.156455 TCTGGGCAATCTAGGAAATCAC 57.844 45.455 0.00 0.00 0.00 3.06
78 79 4.722220 CATCTGGGCAATCTAGGAAATCA 58.278 43.478 0.00 0.00 0.00 2.57
79 80 3.505293 GCATCTGGGCAATCTAGGAAATC 59.495 47.826 0.00 0.00 0.00 2.17
80 81 3.117398 TGCATCTGGGCAATCTAGGAAAT 60.117 43.478 0.00 0.00 41.65 2.17
81 82 2.241941 TGCATCTGGGCAATCTAGGAAA 59.758 45.455 0.00 0.00 41.65 3.13
82 83 1.845791 TGCATCTGGGCAATCTAGGAA 59.154 47.619 0.00 0.00 41.65 3.36
83 84 1.510492 TGCATCTGGGCAATCTAGGA 58.490 50.000 0.00 0.00 41.65 2.94
91 92 2.896044 TGTTGTTATTTGCATCTGGGCA 59.104 40.909 0.00 0.00 43.19 5.36
92 93 3.591196 TGTTGTTATTTGCATCTGGGC 57.409 42.857 0.00 0.00 0.00 5.36
93 94 4.799949 CGATTGTTGTTATTTGCATCTGGG 59.200 41.667 0.00 0.00 0.00 4.45
94 95 4.799949 CCGATTGTTGTTATTTGCATCTGG 59.200 41.667 0.00 0.00 0.00 3.86
95 96 5.401550 ACCGATTGTTGTTATTTGCATCTG 58.598 37.500 0.00 0.00 0.00 2.90
96 97 5.393027 GGACCGATTGTTGTTATTTGCATCT 60.393 40.000 0.00 0.00 0.00 2.90
97 98 4.798387 GGACCGATTGTTGTTATTTGCATC 59.202 41.667 0.00 0.00 0.00 3.91
98 99 4.219507 TGGACCGATTGTTGTTATTTGCAT 59.780 37.500 0.00 0.00 0.00 3.96
99 100 3.570125 TGGACCGATTGTTGTTATTTGCA 59.430 39.130 0.00 0.00 0.00 4.08
100 101 4.167554 TGGACCGATTGTTGTTATTTGC 57.832 40.909 0.00 0.00 0.00 3.68
101 102 5.708948 ACATGGACCGATTGTTGTTATTTG 58.291 37.500 0.00 0.00 0.00 2.32
102 103 5.975693 ACATGGACCGATTGTTGTTATTT 57.024 34.783 0.00 0.00 0.00 1.40
103 104 5.475220 TCAACATGGACCGATTGTTGTTATT 59.525 36.000 23.33 0.00 46.43 1.40
104 105 5.007034 TCAACATGGACCGATTGTTGTTAT 58.993 37.500 23.33 0.00 46.43 1.89
105 106 4.390264 TCAACATGGACCGATTGTTGTTA 58.610 39.130 23.33 10.93 46.43 2.41
106 107 3.218453 TCAACATGGACCGATTGTTGTT 58.782 40.909 23.33 9.44 46.43 2.83
107 108 2.857483 TCAACATGGACCGATTGTTGT 58.143 42.857 23.33 5.02 46.43 3.32
120 121 4.438608 CCAACATTACGACCCATCAACATG 60.439 45.833 0.00 0.00 0.00 3.21
121 122 3.694072 CCAACATTACGACCCATCAACAT 59.306 43.478 0.00 0.00 0.00 2.71
122 123 3.078097 CCAACATTACGACCCATCAACA 58.922 45.455 0.00 0.00 0.00 3.33
123 124 3.078837 ACCAACATTACGACCCATCAAC 58.921 45.455 0.00 0.00 0.00 3.18
124 125 3.078097 CACCAACATTACGACCCATCAA 58.922 45.455 0.00 0.00 0.00 2.57
125 126 2.039216 ACACCAACATTACGACCCATCA 59.961 45.455 0.00 0.00 0.00 3.07
126 127 2.706890 ACACCAACATTACGACCCATC 58.293 47.619 0.00 0.00 0.00 3.51
127 128 2.871096 ACACCAACATTACGACCCAT 57.129 45.000 0.00 0.00 0.00 4.00
128 129 3.557475 CCTTACACCAACATTACGACCCA 60.557 47.826 0.00 0.00 0.00 4.51
129 130 3.004862 CCTTACACCAACATTACGACCC 58.995 50.000 0.00 0.00 0.00 4.46
130 131 3.929094 TCCTTACACCAACATTACGACC 58.071 45.455 0.00 0.00 0.00 4.79
131 132 3.930848 CCTCCTTACACCAACATTACGAC 59.069 47.826 0.00 0.00 0.00 4.34
132 133 3.618019 GCCTCCTTACACCAACATTACGA 60.618 47.826 0.00 0.00 0.00 3.43
133 134 2.676342 GCCTCCTTACACCAACATTACG 59.324 50.000 0.00 0.00 0.00 3.18
134 135 3.014623 GGCCTCCTTACACCAACATTAC 58.985 50.000 0.00 0.00 0.00 1.89
135 136 2.025699 GGGCCTCCTTACACCAACATTA 60.026 50.000 0.84 0.00 0.00 1.90
136 137 1.272480 GGGCCTCCTTACACCAACATT 60.272 52.381 0.84 0.00 0.00 2.71
137 138 0.331616 GGGCCTCCTTACACCAACAT 59.668 55.000 0.84 0.00 0.00 2.71
138 139 1.063070 TGGGCCTCCTTACACCAACA 61.063 55.000 4.53 0.00 0.00 3.33
139 140 0.331616 ATGGGCCTCCTTACACCAAC 59.668 55.000 4.53 0.00 34.45 3.77
140 141 0.331278 CATGGGCCTCCTTACACCAA 59.669 55.000 4.53 0.00 34.45 3.67
141 142 0.844661 ACATGGGCCTCCTTACACCA 60.845 55.000 4.53 0.00 35.39 4.17
142 143 0.331616 AACATGGGCCTCCTTACACC 59.668 55.000 4.53 0.00 0.00 4.16
143 144 1.004277 TCAACATGGGCCTCCTTACAC 59.996 52.381 4.53 0.00 0.00 2.90
144 145 1.367346 TCAACATGGGCCTCCTTACA 58.633 50.000 4.53 0.00 0.00 2.41
145 146 2.301346 CATCAACATGGGCCTCCTTAC 58.699 52.381 4.53 0.00 0.00 2.34
146 147 1.922447 ACATCAACATGGGCCTCCTTA 59.078 47.619 4.53 0.00 33.82 2.69
147 148 0.706433 ACATCAACATGGGCCTCCTT 59.294 50.000 4.53 0.00 33.82 3.36
148 149 0.706433 AACATCAACATGGGCCTCCT 59.294 50.000 4.53 0.00 33.82 3.69
149 150 0.819582 CAACATCAACATGGGCCTCC 59.180 55.000 4.53 0.00 33.82 4.30
150 151 1.203052 CACAACATCAACATGGGCCTC 59.797 52.381 4.53 0.00 33.82 4.70
151 152 1.203038 TCACAACATCAACATGGGCCT 60.203 47.619 4.53 0.00 33.82 5.19
152 153 1.255882 TCACAACATCAACATGGGCC 58.744 50.000 0.00 0.00 33.82 5.80
153 154 2.492881 TCATCACAACATCAACATGGGC 59.507 45.455 0.00 0.00 33.82 5.36
154 155 3.119388 GGTCATCACAACATCAACATGGG 60.119 47.826 0.00 0.00 33.82 4.00
155 156 3.506844 TGGTCATCACAACATCAACATGG 59.493 43.478 0.00 0.00 33.82 3.66
156 157 4.769859 TGGTCATCACAACATCAACATG 57.230 40.909 0.00 0.00 35.92 3.21
157 158 5.244402 ACATTGGTCATCACAACATCAACAT 59.756 36.000 0.00 0.00 0.00 2.71
158 159 4.583907 ACATTGGTCATCACAACATCAACA 59.416 37.500 0.00 0.00 0.00 3.33
159 160 4.919168 CACATTGGTCATCACAACATCAAC 59.081 41.667 0.00 0.00 0.00 3.18
160 161 4.583907 ACACATTGGTCATCACAACATCAA 59.416 37.500 0.00 0.00 0.00 2.57
161 162 4.143543 ACACATTGGTCATCACAACATCA 58.856 39.130 0.00 0.00 0.00 3.07
162 163 4.771590 ACACATTGGTCATCACAACATC 57.228 40.909 0.00 0.00 0.00 3.06
163 164 5.183713 CCTTACACATTGGTCATCACAACAT 59.816 40.000 0.00 0.00 0.00 2.71
164 165 4.518590 CCTTACACATTGGTCATCACAACA 59.481 41.667 0.00 0.00 0.00 3.33
165 166 4.082787 CCCTTACACATTGGTCATCACAAC 60.083 45.833 0.00 0.00 0.00 3.32
166 167 4.078537 CCCTTACACATTGGTCATCACAA 58.921 43.478 0.00 0.00 0.00 3.33
167 168 3.561097 CCCCTTACACATTGGTCATCACA 60.561 47.826 0.00 0.00 0.00 3.58
168 169 3.016736 CCCCTTACACATTGGTCATCAC 58.983 50.000 0.00 0.00 0.00 3.06
169 170 2.025416 CCCCCTTACACATTGGTCATCA 60.025 50.000 0.00 0.00 0.00 3.07
170 171 2.025321 ACCCCCTTACACATTGGTCATC 60.025 50.000 0.00 0.00 0.00 2.92
171 172 2.000048 ACCCCCTTACACATTGGTCAT 59.000 47.619 0.00 0.00 0.00 3.06
172 173 1.451449 ACCCCCTTACACATTGGTCA 58.549 50.000 0.00 0.00 0.00 4.02
173 174 2.597578 AACCCCCTTACACATTGGTC 57.402 50.000 0.00 0.00 0.00 4.02
174 175 3.338110 AAAACCCCCTTACACATTGGT 57.662 42.857 0.00 0.00 0.00 3.67
175 176 4.404394 GGATAAAACCCCCTTACACATTGG 59.596 45.833 0.00 0.00 0.00 3.16
176 177 4.097286 CGGATAAAACCCCCTTACACATTG 59.903 45.833 0.00 0.00 0.00 2.82
177 178 4.018233 TCGGATAAAACCCCCTTACACATT 60.018 41.667 0.00 0.00 0.00 2.71
178 179 3.524380 TCGGATAAAACCCCCTTACACAT 59.476 43.478 0.00 0.00 0.00 3.21
179 180 2.911636 TCGGATAAAACCCCCTTACACA 59.088 45.455 0.00 0.00 0.00 3.72
180 181 3.273434 GTCGGATAAAACCCCCTTACAC 58.727 50.000 0.00 0.00 0.00 2.90
181 182 2.911636 TGTCGGATAAAACCCCCTTACA 59.088 45.455 0.00 0.00 0.00 2.41
182 183 3.632643 TGTCGGATAAAACCCCCTTAC 57.367 47.619 0.00 0.00 0.00 2.34
183 184 4.348754 CCTATGTCGGATAAAACCCCCTTA 59.651 45.833 0.00 0.00 0.00 2.69
184 185 3.137728 CCTATGTCGGATAAAACCCCCTT 59.862 47.826 0.00 0.00 0.00 3.95
185 186 2.709397 CCTATGTCGGATAAAACCCCCT 59.291 50.000 0.00 0.00 0.00 4.79
186 187 2.812983 GCCTATGTCGGATAAAACCCCC 60.813 54.545 0.00 0.00 0.00 5.40
187 188 2.105993 AGCCTATGTCGGATAAAACCCC 59.894 50.000 0.00 0.00 0.00 4.95
188 189 3.071167 AGAGCCTATGTCGGATAAAACCC 59.929 47.826 0.00 0.00 0.00 4.11
189 190 4.058817 CAGAGCCTATGTCGGATAAAACC 58.941 47.826 0.00 0.00 0.00 3.27
190 191 4.058817 CCAGAGCCTATGTCGGATAAAAC 58.941 47.826 0.00 0.00 0.00 2.43
191 192 3.964688 TCCAGAGCCTATGTCGGATAAAA 59.035 43.478 0.00 0.00 0.00 1.52
192 193 3.572642 TCCAGAGCCTATGTCGGATAAA 58.427 45.455 0.00 0.00 0.00 1.40
193 194 3.238788 TCCAGAGCCTATGTCGGATAA 57.761 47.619 0.00 0.00 0.00 1.75
194 195 2.971901 TCCAGAGCCTATGTCGGATA 57.028 50.000 0.00 0.00 0.00 2.59
195 196 1.898472 CATCCAGAGCCTATGTCGGAT 59.102 52.381 0.00 0.00 33.52 4.18
196 197 1.332195 CATCCAGAGCCTATGTCGGA 58.668 55.000 0.00 0.00 0.00 4.55
197 198 0.319728 CCATCCAGAGCCTATGTCGG 59.680 60.000 0.00 0.00 0.00 4.79
198 199 1.043816 ACCATCCAGAGCCTATGTCG 58.956 55.000 0.00 0.00 0.00 4.35
199 200 1.542108 GCACCATCCAGAGCCTATGTC 60.542 57.143 0.00 0.00 0.00 3.06
200 201 0.471617 GCACCATCCAGAGCCTATGT 59.528 55.000 0.00 0.00 0.00 2.29
201 202 0.471191 TGCACCATCCAGAGCCTATG 59.529 55.000 0.00 0.00 0.00 2.23
202 203 0.763652 CTGCACCATCCAGAGCCTAT 59.236 55.000 0.00 0.00 32.03 2.57
203 204 0.325577 TCTGCACCATCCAGAGCCTA 60.326 55.000 0.00 0.00 34.59 3.93
204 205 1.614525 TCTGCACCATCCAGAGCCT 60.615 57.895 0.00 0.00 34.59 4.58
205 206 1.153208 CTCTGCACCATCCAGAGCC 60.153 63.158 5.58 0.00 46.70 4.70
206 207 4.536316 CTCTGCACCATCCAGAGC 57.464 61.111 5.58 0.00 46.70 4.09
208 209 2.580815 CGCTCTGCACCATCCAGA 59.419 61.111 0.00 0.00 37.71 3.86
209 210 3.200593 GCGCTCTGCACCATCCAG 61.201 66.667 0.00 0.00 45.45 3.86
216 217 3.854459 GTAAGCCGCGCTCTGCAC 61.854 66.667 5.56 1.16 46.97 4.57
219 220 2.887568 CTGGTAAGCCGCGCTCTG 60.888 66.667 5.56 0.00 38.25 3.35
220 221 4.148825 CCTGGTAAGCCGCGCTCT 62.149 66.667 5.56 0.00 38.25 4.09
223 224 3.668980 TTACCCTGGTAAGCCGCGC 62.669 63.158 0.00 0.00 35.88 6.86
224 225 1.812507 GTTACCCTGGTAAGCCGCG 60.813 63.158 9.01 0.00 40.69 6.46
225 226 0.743345 CTGTTACCCTGGTAAGCCGC 60.743 60.000 9.01 0.00 40.69 6.53
226 227 0.611714 ACTGTTACCCTGGTAAGCCG 59.388 55.000 9.01 3.91 40.69 5.52
227 228 2.617276 GGAACTGTTACCCTGGTAAGCC 60.617 54.545 9.01 0.03 40.69 4.35
228 229 2.617276 GGGAACTGTTACCCTGGTAAGC 60.617 54.545 10.90 5.61 40.69 3.09
229 230 3.345508 GGGAACTGTTACCCTGGTAAG 57.654 52.381 10.90 1.65 40.69 2.34
236 237 2.940083 GCTAGCAAGGGAACTGTTACCC 60.940 54.545 18.20 16.83 42.68 3.69
237 238 2.290071 TGCTAGCAAGGGAACTGTTACC 60.290 50.000 16.84 14.18 42.68 2.85
238 239 3.003480 CTGCTAGCAAGGGAACTGTTAC 58.997 50.000 19.86 0.00 42.68 2.50
239 240 2.027192 CCTGCTAGCAAGGGAACTGTTA 60.027 50.000 19.86 0.00 42.68 2.41
240 241 1.271597 CCTGCTAGCAAGGGAACTGTT 60.272 52.381 19.86 0.00 42.68 3.16
241 242 0.326264 CCTGCTAGCAAGGGAACTGT 59.674 55.000 19.86 0.00 42.68 3.55
242 243 0.326264 ACCTGCTAGCAAGGGAACTG 59.674 55.000 25.43 9.32 42.68 3.16
244 245 2.027100 ACTAACCTGCTAGCAAGGGAAC 60.027 50.000 25.43 0.00 0.00 3.62
245 246 2.236395 GACTAACCTGCTAGCAAGGGAA 59.764 50.000 25.43 15.77 0.00 3.97
246 247 1.831736 GACTAACCTGCTAGCAAGGGA 59.168 52.381 25.43 15.93 0.00 4.20
247 248 1.834263 AGACTAACCTGCTAGCAAGGG 59.166 52.381 26.69 23.29 0.00 3.95
248 249 3.618690 AAGACTAACCTGCTAGCAAGG 57.381 47.619 19.86 22.15 0.00 3.61
249 250 6.037610 CCATAAAAGACTAACCTGCTAGCAAG 59.962 42.308 19.86 15.76 0.00 4.01
250 251 5.880332 CCATAAAAGACTAACCTGCTAGCAA 59.120 40.000 19.86 2.38 0.00 3.91
251 252 5.188948 TCCATAAAAGACTAACCTGCTAGCA 59.811 40.000 18.22 18.22 0.00 3.49
252 253 5.671493 TCCATAAAAGACTAACCTGCTAGC 58.329 41.667 8.10 8.10 0.00 3.42
253 254 7.103641 TGTTCCATAAAAGACTAACCTGCTAG 58.896 38.462 0.00 0.00 0.00 3.42
254 255 7.011499 TGTTCCATAAAAGACTAACCTGCTA 57.989 36.000 0.00 0.00 0.00 3.49
255 256 5.876357 TGTTCCATAAAAGACTAACCTGCT 58.124 37.500 0.00 0.00 0.00 4.24
256 257 6.374333 TCATGTTCCATAAAAGACTAACCTGC 59.626 38.462 0.00 0.00 0.00 4.85
257 258 7.607991 AGTCATGTTCCATAAAAGACTAACCTG 59.392 37.037 0.00 0.00 33.51 4.00
258 259 7.690256 AGTCATGTTCCATAAAAGACTAACCT 58.310 34.615 0.00 0.00 33.51 3.50
259 260 7.923414 AGTCATGTTCCATAAAAGACTAACC 57.077 36.000 0.00 0.00 33.51 2.85
260 261 9.220767 AGAAGTCATGTTCCATAAAAGACTAAC 57.779 33.333 0.00 0.00 34.10 2.34
261 262 9.793259 AAGAAGTCATGTTCCATAAAAGACTAA 57.207 29.630 0.00 0.00 34.10 2.24
263 264 9.965902 ATAAGAAGTCATGTTCCATAAAAGACT 57.034 29.630 0.00 0.00 36.51 3.24
270 271 9.613428 CAACCTTATAAGAAGTCATGTTCCATA 57.387 33.333 14.28 0.00 0.00 2.74
271 272 8.109634 ACAACCTTATAAGAAGTCATGTTCCAT 58.890 33.333 14.28 0.00 0.00 3.41
272 273 7.458397 ACAACCTTATAAGAAGTCATGTTCCA 58.542 34.615 14.28 0.00 0.00 3.53
273 274 7.923414 ACAACCTTATAAGAAGTCATGTTCC 57.077 36.000 14.28 0.00 0.00 3.62
274 275 9.220767 AGAACAACCTTATAAGAAGTCATGTTC 57.779 33.333 14.28 17.65 41.78 3.18
276 277 9.654663 GTAGAACAACCTTATAAGAAGTCATGT 57.345 33.333 14.28 4.18 0.00 3.21
277 278 9.877178 AGTAGAACAACCTTATAAGAAGTCATG 57.123 33.333 14.28 3.62 0.00 3.07
288 289 9.886132 CCAATACTGTTAGTAGAACAACCTTAT 57.114 33.333 0.00 0.00 33.66 1.73
289 290 7.820872 GCCAATACTGTTAGTAGAACAACCTTA 59.179 37.037 0.00 0.00 33.66 2.69
290 291 6.653740 GCCAATACTGTTAGTAGAACAACCTT 59.346 38.462 0.00 0.00 33.66 3.50
291 292 6.171213 GCCAATACTGTTAGTAGAACAACCT 58.829 40.000 0.00 0.00 33.66 3.50
292 293 5.935789 TGCCAATACTGTTAGTAGAACAACC 59.064 40.000 0.00 0.00 33.66 3.77
293 294 7.464178 CGATGCCAATACTGTTAGTAGAACAAC 60.464 40.741 0.00 0.00 33.66 3.32
294 295 6.533723 CGATGCCAATACTGTTAGTAGAACAA 59.466 38.462 0.00 0.00 33.66 2.83
295 296 6.040247 CGATGCCAATACTGTTAGTAGAACA 58.960 40.000 0.00 0.00 33.66 3.18
296 297 6.040878 ACGATGCCAATACTGTTAGTAGAAC 58.959 40.000 0.00 0.00 33.66 3.01
297 298 6.216801 ACGATGCCAATACTGTTAGTAGAA 57.783 37.500 0.00 0.00 33.66 2.10
298 299 5.847111 ACGATGCCAATACTGTTAGTAGA 57.153 39.130 0.00 0.00 33.66 2.59
299 300 8.589335 AAATACGATGCCAATACTGTTAGTAG 57.411 34.615 0.00 0.00 33.66 2.57
300 301 8.951787 AAAATACGATGCCAATACTGTTAGTA 57.048 30.769 0.00 0.00 34.82 1.82
301 302 7.859325 AAAATACGATGCCAATACTGTTAGT 57.141 32.000 0.00 0.00 0.00 2.24
325 326 4.098894 ACGGAGGGAGTAGGACATAAAAA 58.901 43.478 0.00 0.00 0.00 1.94
326 327 3.716431 ACGGAGGGAGTAGGACATAAAA 58.284 45.455 0.00 0.00 0.00 1.52
327 328 3.393426 ACGGAGGGAGTAGGACATAAA 57.607 47.619 0.00 0.00 0.00 1.40
328 329 3.294214 GAACGGAGGGAGTAGGACATAA 58.706 50.000 0.00 0.00 0.00 1.90
329 330 2.242965 TGAACGGAGGGAGTAGGACATA 59.757 50.000 0.00 0.00 0.00 2.29
330 331 1.006758 TGAACGGAGGGAGTAGGACAT 59.993 52.381 0.00 0.00 0.00 3.06
331 332 0.406750 TGAACGGAGGGAGTAGGACA 59.593 55.000 0.00 0.00 0.00 4.02
332 333 0.816373 GTGAACGGAGGGAGTAGGAC 59.184 60.000 0.00 0.00 0.00 3.85
333 334 0.406750 TGTGAACGGAGGGAGTAGGA 59.593 55.000 0.00 0.00 0.00 2.94
334 335 1.263356 TTGTGAACGGAGGGAGTAGG 58.737 55.000 0.00 0.00 0.00 3.18
335 336 3.611766 ATTTGTGAACGGAGGGAGTAG 57.388 47.619 0.00 0.00 0.00 2.57
336 337 6.795144 TTATATTTGTGAACGGAGGGAGTA 57.205 37.500 0.00 0.00 0.00 2.59
337 338 5.687166 TTATATTTGTGAACGGAGGGAGT 57.313 39.130 0.00 0.00 0.00 3.85
381 382 9.537192 CACTTAATTTAATCCGTATGTAGTCCA 57.463 33.333 0.00 0.00 0.00 4.02
382 383 9.754382 TCACTTAATTTAATCCGTATGTAGTCC 57.246 33.333 0.00 0.00 0.00 3.85
401 402 9.705471 CACGTTTTAGTATGTTTGTTCACTTAA 57.295 29.630 0.00 0.00 0.00 1.85
402 403 8.881743 ACACGTTTTAGTATGTTTGTTCACTTA 58.118 29.630 0.00 0.00 0.00 2.24
403 404 7.754625 ACACGTTTTAGTATGTTTGTTCACTT 58.245 30.769 0.00 0.00 0.00 3.16
404 405 7.311364 ACACGTTTTAGTATGTTTGTTCACT 57.689 32.000 0.00 0.00 0.00 3.41
457 458 9.946165 CCCTCCGTTTAAAAATATAAGATGTTC 57.054 33.333 0.00 0.00 0.00 3.18
458 459 9.689501 TCCCTCCGTTTAAAAATATAAGATGTT 57.310 29.630 0.00 0.00 0.00 2.71
459 460 9.338622 CTCCCTCCGTTTAAAAATATAAGATGT 57.661 33.333 0.00 0.00 0.00 3.06
460 461 9.338622 ACTCCCTCCGTTTAAAAATATAAGATG 57.661 33.333 0.00 0.00 0.00 2.90
473 474 9.822185 GTTTCTAAATTATACTCCCTCCGTTTA 57.178 33.333 0.00 0.00 0.00 2.01
474 475 8.323567 TGTTTCTAAATTATACTCCCTCCGTTT 58.676 33.333 0.00 0.00 0.00 3.60
475 476 7.854337 TGTTTCTAAATTATACTCCCTCCGTT 58.146 34.615 0.00 0.00 0.00 4.44
476 477 7.427989 TGTTTCTAAATTATACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
477 478 8.904099 AATGTTTCTAAATTATACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
502 503 2.153645 CTGGAATGCTGCACAGTTGTA 58.846 47.619 3.57 0.00 0.00 2.41
507 508 2.707849 GGGCTGGAATGCTGCACAG 61.708 63.158 3.57 9.50 0.00 3.66
515 516 0.811281 GGTTTCGAAGGGCTGGAATG 59.189 55.000 0.00 0.00 0.00 2.67
542 543 3.408634 GAGGACATCCAAAGGACGAAAA 58.591 45.455 0.00 0.00 38.89 2.29
555 556 2.039613 GAGATGGGATTGGGAGGACATC 59.960 54.545 0.00 0.00 36.02 3.06
573 576 1.107114 GTCATCCGAGGAAGCAGAGA 58.893 55.000 0.00 0.00 0.00 3.10
577 580 0.465705 GATGGTCATCCGAGGAAGCA 59.534 55.000 0.00 0.00 36.30 3.91
598 601 2.870435 GCGACCCATCATGTATACCACC 60.870 54.545 0.00 0.00 0.00 4.61
600 603 2.325484 AGCGACCCATCATGTATACCA 58.675 47.619 0.00 0.00 0.00 3.25
607 610 0.319040 CGGAGTAGCGACCCATCATG 60.319 60.000 0.00 0.00 0.00 3.07
608 611 1.464376 CCGGAGTAGCGACCCATCAT 61.464 60.000 0.00 0.00 0.00 2.45
610 613 2.728817 CCGGAGTAGCGACCCATC 59.271 66.667 0.00 0.00 0.00 3.51
627 630 2.267174 ATGTATGATCCACCTGCTGC 57.733 50.000 0.00 0.00 0.00 5.25
628 631 4.707105 TGTTATGTATGATCCACCTGCTG 58.293 43.478 0.00 0.00 0.00 4.41
630 633 6.294176 GGATTTGTTATGTATGATCCACCTGC 60.294 42.308 0.00 0.00 34.57 4.85
631 634 7.000472 AGGATTTGTTATGTATGATCCACCTG 59.000 38.462 0.00 0.00 36.39 4.00
633 636 6.147821 CGAGGATTTGTTATGTATGATCCACC 59.852 42.308 0.00 0.00 36.39 4.61
634 637 6.147821 CCGAGGATTTGTTATGTATGATCCAC 59.852 42.308 0.00 0.00 36.39 4.02
635 638 6.183361 ACCGAGGATTTGTTATGTATGATCCA 60.183 38.462 0.00 0.00 36.39 3.41
636 639 6.231211 ACCGAGGATTTGTTATGTATGATCC 58.769 40.000 0.00 0.00 34.62 3.36
637 640 8.467402 CTACCGAGGATTTGTTATGTATGATC 57.533 38.462 0.00 0.00 0.00 2.92
655 665 1.206132 TGGTGTACAATGCCTACCGAG 59.794 52.381 0.00 0.00 34.16 4.63
657 667 2.102070 TTGGTGTACAATGCCTACCG 57.898 50.000 0.00 0.00 33.18 4.02
718 801 7.148222 GGCCAAAGGAGAAGACTAGAATTTAAC 60.148 40.741 0.00 0.00 0.00 2.01
722 805 4.289672 TGGCCAAAGGAGAAGACTAGAATT 59.710 41.667 0.61 0.00 0.00 2.17
724 807 3.248024 TGGCCAAAGGAGAAGACTAGAA 58.752 45.455 0.61 0.00 0.00 2.10
725 808 2.902608 TGGCCAAAGGAGAAGACTAGA 58.097 47.619 0.61 0.00 0.00 2.43
726 809 3.922171 ATGGCCAAAGGAGAAGACTAG 57.078 47.619 10.96 0.00 0.00 2.57
734 817 1.821136 GGAAGACAATGGCCAAAGGAG 59.179 52.381 10.96 0.00 0.00 3.69
743 826 6.769341 TGAATATGACTCATGGAAGACAATGG 59.231 38.462 1.42 0.00 0.00 3.16
783 866 7.434897 CCGTATGTGTGGATTATTTGAATTTGG 59.565 37.037 0.00 0.00 0.00 3.28
797 880 1.271379 GTGACTGACCGTATGTGTGGA 59.729 52.381 0.00 0.00 0.00 4.02
854 937 9.727627 CAAAAGAGAATTGTTTATCTATCCAGC 57.272 33.333 0.00 0.00 32.31 4.85
874 1167 2.032799 CAGCGTGTTTAGGTGCAAAAGA 59.967 45.455 0.00 0.00 0.00 2.52
895 1188 5.640357 CCTGTCGACTGAGGAGTATCTATAC 59.360 48.000 22.46 0.00 33.73 1.47
898 1191 3.744846 GCCTGTCGACTGAGGAGTATCTA 60.745 52.174 22.60 0.00 33.73 1.98
900 1193 1.335496 GCCTGTCGACTGAGGAGTATC 59.665 57.143 22.60 3.95 30.16 2.24
902 1195 0.037734 TGCCTGTCGACTGAGGAGTA 59.962 55.000 22.60 7.71 30.16 2.59
903 1196 0.613292 ATGCCTGTCGACTGAGGAGT 60.613 55.000 22.60 9.23 33.98 3.85
906 1199 1.081892 CAAATGCCTGTCGACTGAGG 58.918 55.000 22.46 19.02 0.00 3.86
907 1200 0.445436 GCAAATGCCTGTCGACTGAG 59.555 55.000 22.46 9.81 34.31 3.35
930 1223 8.395633 GGTTTAATTATTCAACGCTGATACTGT 58.604 33.333 0.00 0.00 0.00 3.55
931 1224 7.855904 GGGTTTAATTATTCAACGCTGATACTG 59.144 37.037 10.48 0.00 32.21 2.74
932 1225 7.554835 TGGGTTTAATTATTCAACGCTGATACT 59.445 33.333 16.20 0.00 35.11 2.12
933 1226 7.699566 TGGGTTTAATTATTCAACGCTGATAC 58.300 34.615 16.20 0.00 35.11 2.24
1001 1294 3.243975 GGATGCTTTGGATAATGGCCTTG 60.244 47.826 3.32 0.00 0.00 3.61
1277 1570 2.556792 ACAGAGAGTGACGACGCG 59.443 61.111 3.53 3.53 0.00 6.01
1782 2295 0.318360 TAGATCAATGGTACGCGCGG 60.318 55.000 35.22 16.31 0.00 6.46
1785 2298 8.328146 CCATAAAATATAGATCAATGGTACGCG 58.672 37.037 3.53 3.53 0.00 6.01
1786 2299 9.162764 ACCATAAAATATAGATCAATGGTACGC 57.837 33.333 8.62 0.00 42.80 4.42
2220 3174 7.718334 AGAAAAGGATGTGGGTTAAATTAGG 57.282 36.000 0.00 0.00 0.00 2.69
2248 3202 6.785466 AGTCCATGTGGGTTAAATTAGGTTTT 59.215 34.615 0.00 0.00 38.11 2.43
2249 3203 6.319715 AGTCCATGTGGGTTAAATTAGGTTT 58.680 36.000 0.00 0.00 38.11 3.27
2251 3205 5.014755 TGAGTCCATGTGGGTTAAATTAGGT 59.985 40.000 0.00 0.00 38.11 3.08
2253 3207 6.659242 AGTTGAGTCCATGTGGGTTAAATTAG 59.341 38.462 0.00 0.00 38.11 1.73
2254 3208 6.432783 CAGTTGAGTCCATGTGGGTTAAATTA 59.567 38.462 0.00 0.00 38.11 1.40
2255 3209 5.243730 CAGTTGAGTCCATGTGGGTTAAATT 59.756 40.000 0.00 0.00 38.11 1.82
2256 3210 4.766891 CAGTTGAGTCCATGTGGGTTAAAT 59.233 41.667 0.00 0.00 38.11 1.40
2257 3211 4.141287 CAGTTGAGTCCATGTGGGTTAAA 58.859 43.478 0.00 0.00 38.11 1.52
2260 3214 1.494721 ACAGTTGAGTCCATGTGGGTT 59.505 47.619 0.00 0.00 38.11 4.11
2261 3215 1.140312 ACAGTTGAGTCCATGTGGGT 58.860 50.000 0.00 0.00 38.11 4.51
2262 3216 3.417069 TTACAGTTGAGTCCATGTGGG 57.583 47.619 0.00 0.00 35.41 4.61
2264 3218 3.814842 TGCTTTACAGTTGAGTCCATGTG 59.185 43.478 0.00 0.00 0.00 3.21
2265 3219 3.815401 GTGCTTTACAGTTGAGTCCATGT 59.185 43.478 0.00 0.00 0.00 3.21
2266 3220 4.067896 AGTGCTTTACAGTTGAGTCCATG 58.932 43.478 0.00 0.00 0.00 3.66
2267 3221 4.357918 AGTGCTTTACAGTTGAGTCCAT 57.642 40.909 0.00 0.00 0.00 3.41
2269 3223 3.680458 GCTAGTGCTTTACAGTTGAGTCC 59.320 47.826 0.00 0.00 36.03 3.85
2270 3224 4.912528 GCTAGTGCTTTACAGTTGAGTC 57.087 45.455 0.00 0.00 36.03 3.36
2312 3386 8.968242 GTTCAGGTACTTTGATGTTTTCATTTC 58.032 33.333 0.00 0.00 37.30 2.17
2507 4851 7.562135 TGTCTAATTAAAGGTAGGATGTGGAC 58.438 38.462 0.00 0.00 0.00 4.02
2653 5134 2.931969 TGAGTCATCGATGATGCACAAC 59.068 45.455 29.53 15.93 39.63 3.32
2685 5166 3.181493 GGCCTCTGCAATAACTTGACATG 60.181 47.826 0.00 0.00 40.13 3.21
2694 5177 0.039035 AAACCCGGCCTCTGCAATAA 59.961 50.000 0.00 0.00 40.13 1.40
2714 5197 0.968901 ATGGCGAGTCACCGGTAGAA 60.969 55.000 6.87 0.00 0.00 2.10
2743 5226 2.200373 AGCCCGCTAATTGAAACTGT 57.800 45.000 0.00 0.00 0.00 3.55
2771 5254 0.034337 GTTTGAGTCGGGTGCCACTA 59.966 55.000 0.00 0.00 0.00 2.74
2829 5312 9.407380 TGTATAATTGTCTGATAAGGTTGCAAT 57.593 29.630 0.59 0.00 0.00 3.56
2940 5423 4.914312 TTCACGTAAATTACTTCTGGCG 57.086 40.909 1.42 0.00 0.00 5.69
2958 5966 5.126869 ACATGGAAAACACACTGTGAATTCA 59.873 36.000 16.30 3.38 36.96 2.57
3312 6349 2.763448 CCTCCTTCTTCAACCTCGAGAT 59.237 50.000 15.71 0.00 0.00 2.75
3449 6489 3.736252 CAGAGTGACGACGAAAAAGTGAT 59.264 43.478 0.00 0.00 0.00 3.06
3531 6724 0.734889 AGGTAGATGTTTGCATGCGC 59.265 50.000 14.09 0.00 35.07 6.09
3532 6725 2.009051 TCAGGTAGATGTTTGCATGCG 58.991 47.619 14.09 0.00 35.07 4.73
3554 6747 7.321908 TCACAACATGCATGCAATTATTAAGT 58.678 30.769 26.68 12.36 0.00 2.24
3651 7216 4.569943 TGCGAAGAAATAAGCTCAAGTCT 58.430 39.130 0.00 0.00 0.00 3.24
3678 7243 5.009610 TGCGAGGAAATAAGCTCAAGTTTTT 59.990 36.000 0.00 0.00 0.00 1.94
3710 7283 7.326968 AGGCATAAATAAGCTCAAGTCTTTC 57.673 36.000 0.00 0.00 0.00 2.62
3711 7284 8.844244 CATAGGCATAAATAAGCTCAAGTCTTT 58.156 33.333 0.00 0.00 0.00 2.52
3712 7285 7.040823 GCATAGGCATAAATAAGCTCAAGTCTT 60.041 37.037 0.00 0.00 40.72 3.01
3713 7286 6.429385 GCATAGGCATAAATAAGCTCAAGTCT 59.571 38.462 0.00 0.00 40.72 3.24
3778 7351 5.585820 AAAACTCTTTACCCTCGCAAAAA 57.414 34.783 0.00 0.00 0.00 1.94
3779 7352 6.887626 ATAAAACTCTTTACCCTCGCAAAA 57.112 33.333 0.00 0.00 29.82 2.44
3780 7353 6.072342 GGAATAAAACTCTTTACCCTCGCAAA 60.072 38.462 0.00 0.00 29.82 3.68
3781 7354 5.413523 GGAATAAAACTCTTTACCCTCGCAA 59.586 40.000 0.00 0.00 29.82 4.85
3782 7355 4.939439 GGAATAAAACTCTTTACCCTCGCA 59.061 41.667 0.00 0.00 29.82 5.10
3783 7356 4.939439 TGGAATAAAACTCTTTACCCTCGC 59.061 41.667 0.00 0.00 29.82 5.03
3784 7357 8.726870 TTATGGAATAAAACTCTTTACCCTCG 57.273 34.615 0.00 0.00 35.49 4.63
3785 7358 9.901172 TCTTATGGAATAAAACTCTTTACCCTC 57.099 33.333 0.00 0.00 38.53 4.30
3800 7373 9.959721 GAGCAATAACCCTATTCTTATGGAATA 57.040 33.333 0.00 0.00 43.59 1.75
3801 7374 7.890655 GGAGCAATAACCCTATTCTTATGGAAT 59.109 37.037 0.00 0.00 45.53 3.01
3802 7375 7.147213 TGGAGCAATAACCCTATTCTTATGGAA 60.147 37.037 0.00 0.00 38.41 3.53
3803 7376 6.331572 TGGAGCAATAACCCTATTCTTATGGA 59.668 38.462 0.00 0.00 0.00 3.41
3804 7377 6.542821 TGGAGCAATAACCCTATTCTTATGG 58.457 40.000 0.00 0.00 0.00 2.74
3805 7378 9.911788 ATATGGAGCAATAACCCTATTCTTATG 57.088 33.333 0.00 0.00 0.00 1.90
3807 7380 9.739276 CAATATGGAGCAATAACCCTATTCTTA 57.261 33.333 0.00 0.00 29.30 2.10
3808 7381 8.227507 ACAATATGGAGCAATAACCCTATTCTT 58.772 33.333 0.00 0.00 29.30 2.52
3809 7382 7.759607 ACAATATGGAGCAATAACCCTATTCT 58.240 34.615 0.00 0.00 29.30 2.40
3810 7383 7.665559 TGACAATATGGAGCAATAACCCTATTC 59.334 37.037 0.00 0.00 29.30 1.75
3811 7384 7.526041 TGACAATATGGAGCAATAACCCTATT 58.474 34.615 0.00 0.00 30.93 1.73
3812 7385 7.090319 TGACAATATGGAGCAATAACCCTAT 57.910 36.000 0.00 0.00 0.00 2.57
3813 7386 6.508030 TGACAATATGGAGCAATAACCCTA 57.492 37.500 0.00 0.00 0.00 3.53
3814 7387 5.387113 TGACAATATGGAGCAATAACCCT 57.613 39.130 0.00 0.00 0.00 4.34
3815 7388 5.536161 ACATGACAATATGGAGCAATAACCC 59.464 40.000 0.00 0.00 32.32 4.11
3816 7389 6.639632 ACATGACAATATGGAGCAATAACC 57.360 37.500 0.00 0.00 32.32 2.85
3817 7390 9.056005 TCTTACATGACAATATGGAGCAATAAC 57.944 33.333 0.00 0.00 32.32 1.89
3818 7391 9.797642 ATCTTACATGACAATATGGAGCAATAA 57.202 29.630 0.00 0.00 32.32 1.40
3819 7392 9.440773 GATCTTACATGACAATATGGAGCAATA 57.559 33.333 0.00 0.00 32.32 1.90
3833 7406 4.678509 TTTTGCGGTGATCTTACATGAC 57.321 40.909 0.00 0.00 0.00 3.06
4044 7628 5.921962 ACTAACACTGTGCATCTCTGATA 57.078 39.130 7.90 0.00 0.00 2.15
4096 9110 1.607801 GGGAAATGCAGTTGCCTCCC 61.608 60.000 27.47 17.12 42.39 4.30
4118 9466 4.124351 GGTGGCGTCGACGGATCA 62.124 66.667 36.13 16.73 40.23 2.92
4151 9500 1.069090 GCCACAGTGGTCGTCAGAA 59.931 57.895 21.26 0.00 40.46 3.02
4165 9514 1.973281 CCCACCATCACACTGCCAC 60.973 63.158 0.00 0.00 0.00 5.01
4198 9547 7.610305 ACCCAATAGAAGACAATACGAACAAAT 59.390 33.333 0.00 0.00 0.00 2.32
4200 9549 6.469410 ACCCAATAGAAGACAATACGAACAA 58.531 36.000 0.00 0.00 0.00 2.83
4207 9556 8.934023 AACTCAAAACCCAATAGAAGACAATA 57.066 30.769 0.00 0.00 0.00 1.90
4210 9559 7.654022 AAAACTCAAAACCCAATAGAAGACA 57.346 32.000 0.00 0.00 0.00 3.41
4213 9562 7.200455 ACGAAAAACTCAAAACCCAATAGAAG 58.800 34.615 0.00 0.00 0.00 2.85
4262 9612 6.657966 GCCAAGGATCATTATTCTCATCATCA 59.342 38.462 0.00 0.00 0.00 3.07
4264 9614 6.791371 AGCCAAGGATCATTATTCTCATCAT 58.209 36.000 0.00 0.00 0.00 2.45
4265 9615 6.196918 AGCCAAGGATCATTATTCTCATCA 57.803 37.500 0.00 0.00 0.00 3.07
4302 9652 1.976132 ATCGACACCCCTGCCATGAG 61.976 60.000 0.00 0.00 0.00 2.90
4309 9659 1.480545 TCATACACATCGACACCCCTG 59.519 52.381 0.00 0.00 0.00 4.45
4321 9671 4.351192 CTCGACGATTGACATCATACACA 58.649 43.478 0.00 0.00 0.00 3.72
4349 9699 7.125507 TGGAAAAACAATAATCATGCCATACCT 59.874 33.333 0.00 0.00 0.00 3.08
4358 9708 6.042143 GCCGTCATGGAAAAACAATAATCAT 58.958 36.000 0.00 0.00 42.00 2.45
4365 9715 0.312416 CCGCCGTCATGGAAAAACAA 59.688 50.000 0.00 0.00 42.00 2.83
4366 9716 1.953017 CCGCCGTCATGGAAAAACA 59.047 52.632 0.00 0.00 42.00 2.83
4401 9751 3.428282 GCAACGTTACCCGCCCAG 61.428 66.667 0.00 0.00 41.42 4.45
4406 9756 1.758319 CTATGCCGCAACGTTACCCG 61.758 60.000 0.00 4.30 44.03 5.28
4407 9757 0.741927 ACTATGCCGCAACGTTACCC 60.742 55.000 0.00 0.00 0.00 3.69
4408 9758 1.081094 AACTATGCCGCAACGTTACC 58.919 50.000 0.00 0.00 0.00 2.85
4409 9759 2.886587 AAACTATGCCGCAACGTTAC 57.113 45.000 0.00 0.00 0.00 2.50
4410 9760 2.548904 ACAAAACTATGCCGCAACGTTA 59.451 40.909 0.00 0.00 0.00 3.18
4411 9761 1.335496 ACAAAACTATGCCGCAACGTT 59.665 42.857 0.00 0.00 0.00 3.99
4424 9774 4.315803 CGTATCTGGTGGAGAACAAAACT 58.684 43.478 0.00 0.00 33.12 2.66
4447 9797 4.775236 ACTTCATAATTCCCTGACAGAGC 58.225 43.478 3.32 0.00 0.00 4.09
4507 9857 0.818296 GAAGCTAGCAACGAGGAGGA 59.182 55.000 18.83 0.00 0.00 3.71
4539 9889 4.371624 TGGTGACCATGATTTGAGAAGT 57.628 40.909 0.00 0.00 0.00 3.01
4546 9897 3.194116 GCAGACATTGGTGACCATGATTT 59.806 43.478 4.56 0.00 31.53 2.17
4562 9913 7.161404 AGTCATTTGATACAAACTAGCAGACA 58.839 34.615 0.00 0.00 0.00 3.41
4573 9924 4.258543 GACCGGGAAGTCATTTGATACAA 58.741 43.478 6.32 0.00 36.73 2.41
4650 10002 0.249699 ATATTCGTTGCCGCATCCGA 60.250 50.000 10.58 10.58 36.29 4.55
4683 10036 3.055458 TCTTCCTTATGCATTCACCGACA 60.055 43.478 3.54 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.