Multiple sequence alignment - TraesCS1A01G300400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G300400 chr1A 100.000 2579 0 0 1 2579 495305563 495308141 0.000000e+00 4763
1 TraesCS1A01G300400 chr1A 87.075 735 67 15 974 1691 495320189 495320912 0.000000e+00 806
2 TraesCS1A01G300400 chr1A 96.891 193 6 0 2387 2579 397743850 397744042 8.900000e-85 324
3 TraesCS1A01G300400 chr1A 97.368 190 4 1 2390 2579 365446823 365447011 3.200000e-84 322
4 TraesCS1A01G300400 chr1D 88.242 1718 151 28 1 1698 398092810 398094496 0.000000e+00 2006
5 TraesCS1A01G300400 chr1D 85.703 1280 88 48 737 1982 398121304 398122522 0.000000e+00 1262
6 TraesCS1A01G300400 chr1D 81.468 1117 115 37 706 1786 398246033 398247093 0.000000e+00 832
7 TraesCS1A01G300400 chr1D 86.654 547 63 4 998 1535 398379834 398380379 4.750000e-167 597
8 TraesCS1A01G300400 chr1D 89.865 296 22 3 1687 1982 398096616 398096903 8.710000e-100 374
9 TraesCS1A01G300400 chr1D 83.422 374 47 8 1984 2352 398096944 398097307 1.480000e-87 333
10 TraesCS1A01G300400 chr1D 84.112 321 44 6 70 388 11089898 11090213 1.160000e-78 303
11 TraesCS1A01G300400 chr1D 83.851 322 41 7 70 388 11041187 11041500 1.940000e-76 296
12 TraesCS1A01G300400 chr1B 91.547 1254 64 18 543 1767 533747380 533748620 0.000000e+00 1690
13 TraesCS1A01G300400 chr1B 86.103 662 61 17 960 1609 533759897 533760539 0.000000e+00 684
14 TraesCS1A01G300400 chr1B 96.392 194 6 1 2387 2579 592491927 592492120 4.140000e-83 318
15 TraesCS1A01G300400 chr1B 82.919 322 52 3 68 386 566713670 566713991 1.170000e-73 287
16 TraesCS1A01G300400 chr5B 87.500 408 51 0 1110 1517 491272798 491273205 3.000000e-129 472
17 TraesCS1A01G300400 chr5B 82.772 534 80 10 1082 1610 491280097 491280623 1.400000e-127 466
18 TraesCS1A01G300400 chr5B 85.912 433 55 1 1085 1511 491370259 491370691 8.410000e-125 457
19 TraesCS1A01G300400 chr4A 97.409 193 5 0 2387 2579 20241564 20241756 1.910000e-86 329
20 TraesCS1A01G300400 chr3A 97.354 189 4 1 2391 2579 712387080 712387267 1.150000e-83 320
21 TraesCS1A01G300400 chr7A 96.842 190 6 0 2390 2579 651055301 651055112 4.140000e-83 318
22 TraesCS1A01G300400 chr7A 83.036 336 47 9 68 400 521403028 521403356 1.940000e-76 296
23 TraesCS1A01G300400 chr6D 96.842 190 6 0 2390 2579 153111277 153111088 4.140000e-83 318
24 TraesCS1A01G300400 chr3D 96.859 191 5 1 2390 2579 593685006 593684816 4.140000e-83 318
25 TraesCS1A01G300400 chr3B 96.842 190 6 0 2390 2579 166174081 166173892 4.140000e-83 318
26 TraesCS1A01G300400 chr5D 82.941 340 51 7 68 405 481171160 481171494 1.500000e-77 300
27 TraesCS1A01G300400 chr4D 82.840 338 53 3 68 403 467584850 467584516 5.390000e-77 298
28 TraesCS1A01G300400 chr4D 82.831 332 51 4 73 400 502369495 502369166 2.510000e-75 292
29 TraesCS1A01G300400 chr5A 81.791 335 52 5 68 400 11884448 11884121 3.270000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G300400 chr1A 495305563 495308141 2578 False 4763.000000 4763 100.000000 1 2579 1 chr1A.!!$F3 2578
1 TraesCS1A01G300400 chr1A 495320189 495320912 723 False 806.000000 806 87.075000 974 1691 1 chr1A.!!$F4 717
2 TraesCS1A01G300400 chr1D 398121304 398122522 1218 False 1262.000000 1262 85.703000 737 1982 1 chr1D.!!$F3 1245
3 TraesCS1A01G300400 chr1D 398092810 398097307 4497 False 904.333333 2006 87.176333 1 2352 3 chr1D.!!$F6 2351
4 TraesCS1A01G300400 chr1D 398246033 398247093 1060 False 832.000000 832 81.468000 706 1786 1 chr1D.!!$F4 1080
5 TraesCS1A01G300400 chr1D 398379834 398380379 545 False 597.000000 597 86.654000 998 1535 1 chr1D.!!$F5 537
6 TraesCS1A01G300400 chr1B 533747380 533748620 1240 False 1690.000000 1690 91.547000 543 1767 1 chr1B.!!$F1 1224
7 TraesCS1A01G300400 chr1B 533759897 533760539 642 False 684.000000 684 86.103000 960 1609 1 chr1B.!!$F2 649
8 TraesCS1A01G300400 chr5B 491280097 491280623 526 False 466.000000 466 82.772000 1082 1610 1 chr5B.!!$F2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.105964 CCGGGTGTTGTCTTCAGTGA 59.894 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 4285 0.468226 TTTGCCCCGGAGTAGCATAG 59.532 55.0 0.73 0.0 36.2 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.267128 TGATGCCTTGTCATCCAATTATTTTC 58.733 34.615 1.84 0.00 41.54 2.29
30 31 7.043565 GCCTTGTCATCCAATTATTTTCATGT 58.956 34.615 0.00 0.00 31.20 3.21
49 50 7.043961 TCATGTTGTTACCAATGTTAAGCAA 57.956 32.000 0.00 0.00 32.11 3.91
51 52 6.701145 TGTTGTTACCAATGTTAAGCAAGA 57.299 33.333 0.00 0.00 32.11 3.02
59 60 6.534634 ACCAATGTTAAGCAAGACTAGAAGT 58.465 36.000 0.00 0.00 0.00 3.01
60 61 6.428159 ACCAATGTTAAGCAAGACTAGAAGTG 59.572 38.462 0.00 0.00 0.00 3.16
93 94 3.192541 AGGCATTGTTTTTGGGTGAAC 57.807 42.857 0.00 0.00 0.00 3.18
95 96 3.130633 GGCATTGTTTTTGGGTGAACTC 58.869 45.455 0.00 0.00 0.00 3.01
133 134 4.332819 GTGAAAACCCATGATCTTAGACCG 59.667 45.833 0.00 0.00 0.00 4.79
139 140 2.213499 CATGATCTTAGACCGGGCAAC 58.787 52.381 11.69 0.00 0.00 4.17
156 157 1.068474 AACGACTACGCTTGTGCATC 58.932 50.000 0.00 0.00 43.96 3.91
157 158 0.243907 ACGACTACGCTTGTGCATCT 59.756 50.000 0.00 0.00 43.96 2.90
161 162 3.722082 CGACTACGCTTGTGCATCTTTTC 60.722 47.826 0.00 0.00 39.64 2.29
162 163 2.484264 ACTACGCTTGTGCATCTTTTCC 59.516 45.455 0.00 0.00 39.64 3.13
168 169 4.083324 CGCTTGTGCATCTTTTCCTTCTTA 60.083 41.667 0.00 0.00 39.64 2.10
189 190 2.887152 AGAGGCGTTGCTTTTGAAGAAT 59.113 40.909 0.00 0.00 0.00 2.40
192 193 3.057946 AGGCGTTGCTTTTGAAGAATCTC 60.058 43.478 0.00 0.00 0.00 2.75
202 203 9.683069 TGCTTTTGAAGAATCTCTTTTGTATTC 57.317 29.630 0.00 0.00 36.73 1.75
204 205 9.334693 CTTTTGAAGAATCTCTTTTGTATTCCG 57.665 33.333 0.00 0.00 36.73 4.30
216 217 3.048337 TGTATTCCGGGTGTTGTCTTC 57.952 47.619 0.00 0.00 0.00 2.87
217 218 2.369203 TGTATTCCGGGTGTTGTCTTCA 59.631 45.455 0.00 0.00 0.00 3.02
221 222 0.105964 CCGGGTGTTGTCTTCAGTGA 59.894 55.000 0.00 0.00 0.00 3.41
226 227 2.808543 GGTGTTGTCTTCAGTGATGGTC 59.191 50.000 6.21 1.84 0.00 4.02
256 257 4.773013 TGCTGATGCTAGTGATTCATCAA 58.227 39.130 10.11 0.00 43.88 2.57
257 258 4.573607 TGCTGATGCTAGTGATTCATCAAC 59.426 41.667 10.11 7.30 43.88 3.18
262 263 4.758688 TGCTAGTGATTCATCAACGTGAT 58.241 39.130 0.00 0.00 38.75 3.06
322 323 2.305635 TGGCTGTGTGTATCCTTGATGT 59.694 45.455 0.00 0.00 0.00 3.06
323 324 2.939103 GGCTGTGTGTATCCTTGATGTC 59.061 50.000 0.00 0.00 0.00 3.06
324 325 3.369892 GGCTGTGTGTATCCTTGATGTCT 60.370 47.826 0.00 0.00 0.00 3.41
327 328 5.391310 GCTGTGTGTATCCTTGATGTCTTTG 60.391 44.000 0.00 0.00 0.00 2.77
328 329 5.863965 TGTGTGTATCCTTGATGTCTTTGA 58.136 37.500 0.00 0.00 0.00 2.69
330 331 6.942005 TGTGTGTATCCTTGATGTCTTTGAAT 59.058 34.615 0.00 0.00 0.00 2.57
333 334 9.330063 TGTGTATCCTTGATGTCTTTGAATATC 57.670 33.333 0.00 0.00 0.00 1.63
355 356 6.938698 TCTTGTTGGTATAAAGACCTGGTA 57.061 37.500 0.00 0.00 40.46 3.25
370 371 5.424252 AGACCTGGTAAAATCGGTATCTTCA 59.576 40.000 0.00 0.00 0.00 3.02
371 372 5.425630 ACCTGGTAAAATCGGTATCTTCAC 58.574 41.667 0.00 0.00 0.00 3.18
415 416 2.411748 CGAAAAGAAGCGATGCAGTGTA 59.588 45.455 0.00 0.00 0.00 2.90
423 424 6.338146 AGAAGCGATGCAGTGTACTAATTAA 58.662 36.000 0.00 0.00 0.00 1.40
440 441 7.396419 ACTAATTAACATCGCGTGAACATAAC 58.604 34.615 5.77 0.00 0.00 1.89
443 444 3.722555 ACATCGCGTGAACATAACAAG 57.277 42.857 5.77 0.00 0.00 3.16
461 488 9.133627 CATAACAAGTAATCCGATCTCAGTATG 57.866 37.037 0.00 0.00 37.54 2.39
478 505 7.153217 TCAGTATGAAGTTTCGTGTAGATGA 57.847 36.000 0.00 0.00 45.97 2.92
479 506 7.772166 TCAGTATGAAGTTTCGTGTAGATGAT 58.228 34.615 0.00 0.00 45.97 2.45
480 507 8.251026 TCAGTATGAAGTTTCGTGTAGATGATT 58.749 33.333 0.00 0.00 45.97 2.57
481 508 9.516314 CAGTATGAAGTTTCGTGTAGATGATTA 57.484 33.333 0.00 0.00 39.69 1.75
482 509 9.737427 AGTATGAAGTTTCGTGTAGATGATTAG 57.263 33.333 0.00 0.00 0.00 1.73
483 510 9.517609 GTATGAAGTTTCGTGTAGATGATTAGT 57.482 33.333 0.00 0.00 0.00 2.24
484 511 8.635877 ATGAAGTTTCGTGTAGATGATTAGTC 57.364 34.615 0.00 0.00 0.00 2.59
485 512 7.827701 TGAAGTTTCGTGTAGATGATTAGTCT 58.172 34.615 0.00 0.00 0.00 3.24
486 513 7.755373 TGAAGTTTCGTGTAGATGATTAGTCTG 59.245 37.037 0.00 0.00 0.00 3.51
487 514 7.392494 AGTTTCGTGTAGATGATTAGTCTGA 57.608 36.000 0.00 0.00 0.00 3.27
488 515 7.827701 AGTTTCGTGTAGATGATTAGTCTGAA 58.172 34.615 0.00 0.00 0.00 3.02
489 516 7.971168 AGTTTCGTGTAGATGATTAGTCTGAAG 59.029 37.037 0.00 0.00 0.00 3.02
490 517 7.392494 TTCGTGTAGATGATTAGTCTGAAGT 57.608 36.000 0.00 0.00 0.00 3.01
491 518 7.392494 TCGTGTAGATGATTAGTCTGAAGTT 57.608 36.000 0.00 0.00 0.00 2.66
492 519 7.251281 TCGTGTAGATGATTAGTCTGAAGTTG 58.749 38.462 0.00 0.00 0.00 3.16
493 520 7.120726 TCGTGTAGATGATTAGTCTGAAGTTGA 59.879 37.037 0.00 0.00 0.00 3.18
494 521 7.918033 CGTGTAGATGATTAGTCTGAAGTTGAT 59.082 37.037 0.00 0.00 0.00 2.57
495 522 9.029243 GTGTAGATGATTAGTCTGAAGTTGATG 57.971 37.037 0.00 0.00 0.00 3.07
496 523 8.971073 TGTAGATGATTAGTCTGAAGTTGATGA 58.029 33.333 0.00 0.00 0.00 2.92
497 524 9.979578 GTAGATGATTAGTCTGAAGTTGATGAT 57.020 33.333 0.00 0.00 0.00 2.45
499 526 9.902684 AGATGATTAGTCTGAAGTTGATGATTT 57.097 29.630 0.00 0.00 0.00 2.17
500 527 9.932699 GATGATTAGTCTGAAGTTGATGATTTG 57.067 33.333 0.00 0.00 0.00 2.32
501 528 8.272545 TGATTAGTCTGAAGTTGATGATTTGG 57.727 34.615 0.00 0.00 0.00 3.28
502 529 6.500684 TTAGTCTGAAGTTGATGATTTGGC 57.499 37.500 0.00 0.00 0.00 4.52
518 545 1.729586 TGGCTCCTAGTTCCACACTT 58.270 50.000 0.00 0.00 36.88 3.16
556 583 1.134220 TCTTGTTGCAAGAAGGACGGT 60.134 47.619 29.68 0.00 30.85 4.83
603 630 0.388649 CAAGTAGAGCGGCTGTTCGT 60.389 55.000 7.50 0.00 0.00 3.85
800 835 3.678548 CGCCTTTCTACAAAGTACACTCC 59.321 47.826 0.00 0.00 37.87 3.85
803 838 3.308438 TTCTACAAAGTACACTCCCGC 57.692 47.619 0.00 0.00 0.00 6.13
804 839 1.200716 TCTACAAAGTACACTCCCGCG 59.799 52.381 0.00 0.00 0.00 6.46
898 933 1.779724 GAGTGACAGACGAACACGAAC 59.220 52.381 0.00 0.00 39.19 3.95
920 962 0.731417 CAGCTTAGCACAGGCATCAC 59.269 55.000 7.07 0.00 44.61 3.06
959 1001 0.110486 AACATCCAGCGTTGGGTCTT 59.890 50.000 18.99 1.75 45.10 3.01
969 1030 3.485346 TTGGGTCTTGGGTGGACGC 62.485 63.158 0.00 0.00 43.74 5.19
1074 1154 1.949847 CTCTCCAAGACCACGCCGAT 61.950 60.000 0.00 0.00 0.00 4.18
1553 1648 2.743928 GTGCCCCGCAGAGAACAG 60.744 66.667 0.00 0.00 40.08 3.16
1646 1744 2.092968 TGACAAAGGAGCACTGTTCTGT 60.093 45.455 0.00 0.00 0.00 3.41
1799 4025 6.613233 TGTAAATATTTGACGGCGAAAACAT 58.387 32.000 16.62 5.81 0.00 2.71
1804 4030 4.335082 TTTGACGGCGAAAACATCATAG 57.665 40.909 16.62 0.00 0.00 2.23
1826 4053 8.992073 CATAGAACATTTTTCTTTTGGAAAGGG 58.008 33.333 1.04 0.00 43.68 3.95
1854 4081 1.468985 ACACCTCGTCTCTCCATCAG 58.531 55.000 0.00 0.00 0.00 2.90
1869 4096 1.878088 CATCAGATATGCACACAGCCC 59.122 52.381 0.00 0.00 44.83 5.19
1888 4115 9.295825 CACAGCCCTATATTATTGGTTATTTGA 57.704 33.333 3.90 0.00 0.00 2.69
1932 4159 9.425577 GTATTTAAGTATGTGAAGCCTAGGATC 57.574 37.037 14.75 10.55 0.00 3.36
1938 4165 1.069204 GTGAAGCCTAGGATCGATGCA 59.931 52.381 19.67 4.43 0.00 3.96
1982 4209 3.092443 GGGAAAACCTGAGGCCATCCT 62.092 57.143 5.01 0.00 40.30 3.24
1985 4251 1.972588 AAACCTGAGGCCATCCTACT 58.027 50.000 5.01 0.00 44.46 2.57
1996 4262 7.224297 TGAGGCCATCCTACTAAAAATATGAC 58.776 38.462 5.01 0.00 44.46 3.06
1999 4265 7.667219 AGGCCATCCTACTAAAAATATGACATG 59.333 37.037 5.01 0.00 42.06 3.21
2000 4266 7.448469 GGCCATCCTACTAAAAATATGACATGT 59.552 37.037 0.00 0.00 0.00 3.21
2001 4267 8.507249 GCCATCCTACTAAAAATATGACATGTC 58.493 37.037 19.27 19.27 0.00 3.06
2009 4275 9.507329 ACTAAAAATATGACATGTCACTGAACT 57.493 29.630 30.09 15.85 43.11 3.01
2034 4300 3.277142 AAAAACTATGCTACTCCGGGG 57.723 47.619 0.00 0.00 0.00 5.73
2035 4301 0.468648 AAACTATGCTACTCCGGGGC 59.531 55.000 0.00 1.53 0.00 5.80
2036 4302 0.689745 AACTATGCTACTCCGGGGCA 60.690 55.000 0.00 8.07 40.32 5.36
2037 4303 0.689745 ACTATGCTACTCCGGGGCAA 60.690 55.000 0.00 0.00 39.46 4.52
2038 4304 0.468226 CTATGCTACTCCGGGGCAAA 59.532 55.000 0.00 0.00 39.46 3.68
2039 4305 0.468226 TATGCTACTCCGGGGCAAAG 59.532 55.000 0.00 0.00 39.46 2.77
2040 4306 2.824489 GCTACTCCGGGGCAAAGC 60.824 66.667 0.00 4.35 0.00 3.51
2062 4329 1.851658 AGAAAAATTGGTGTGCACGC 58.148 45.000 22.19 22.19 0.00 5.34
2065 4332 0.179124 AAAATTGGTGTGCACGCGTT 60.179 45.000 23.21 14.88 0.00 4.84
2081 4348 1.873591 GCGTTGATGTTGACAGGTTCT 59.126 47.619 0.00 0.00 0.00 3.01
2083 4350 3.684788 GCGTTGATGTTGACAGGTTCTAT 59.315 43.478 0.00 0.00 0.00 1.98
2092 4359 5.778241 TGTTGACAGGTTCTATCAAGGTCTA 59.222 40.000 0.00 0.00 33.16 2.59
2098 4365 6.051717 CAGGTTCTATCAAGGTCTAACATGG 58.948 44.000 0.00 0.00 0.00 3.66
2113 4380 0.734889 CATGGGACTTTCATCACCGC 59.265 55.000 0.00 0.00 0.00 5.68
2115 4382 0.605319 TGGGACTTTCATCACCGCAC 60.605 55.000 0.00 0.00 0.00 5.34
2124 4391 0.445436 CATCACCGCACTCAAGCTTC 59.555 55.000 0.00 0.00 0.00 3.86
2125 4392 0.035317 ATCACCGCACTCAAGCTTCA 59.965 50.000 0.00 0.00 0.00 3.02
2126 4393 0.179059 TCACCGCACTCAAGCTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
2127 4394 0.662619 CACCGCACTCAAGCTTCAAA 59.337 50.000 0.00 0.00 0.00 2.69
2128 4395 0.663153 ACCGCACTCAAGCTTCAAAC 59.337 50.000 0.00 0.00 0.00 2.93
2138 4405 3.130340 TCAAGCTTCAAACCAACACCTTC 59.870 43.478 0.00 0.00 0.00 3.46
2154 4421 3.312421 CACCTTCAACAAGAACATGTCGT 59.688 43.478 0.00 0.00 31.81 4.34
2163 4430 0.448861 GAACATGTCGTTCGCACACG 60.449 55.000 0.00 0.00 44.41 4.49
2174 4441 3.947279 CGCACACGAACATTACCTG 57.053 52.632 0.00 0.00 43.93 4.00
2180 4447 5.560148 GCACACGAACATTACCTGAAATAG 58.440 41.667 0.00 0.00 0.00 1.73
2181 4448 5.350365 GCACACGAACATTACCTGAAATAGA 59.650 40.000 0.00 0.00 0.00 1.98
2184 4451 7.330946 CACACGAACATTACCTGAAATAGAGAA 59.669 37.037 0.00 0.00 0.00 2.87
2197 4464 5.104941 TGAAATAGAGAAAGGGAAGATCGCA 60.105 40.000 0.00 0.00 0.00 5.10
2198 4465 5.559148 AATAGAGAAAGGGAAGATCGCAT 57.441 39.130 0.00 0.00 0.00 4.73
2205 4472 3.071874 AGGGAAGATCGCATGTTTTCA 57.928 42.857 0.00 0.00 0.00 2.69
2213 4480 1.000394 TCGCATGTTTTCACGAGGAGA 60.000 47.619 0.00 0.00 0.00 3.71
2215 4482 2.411547 CGCATGTTTTCACGAGGAGAAC 60.412 50.000 0.00 0.00 40.17 3.01
2229 4496 3.914312 AGGAGAACACACATACTTGTCG 58.086 45.455 0.00 0.00 32.34 4.35
2246 4513 3.649073 TGTCGTCGAATTTGTCACTGAT 58.351 40.909 0.00 0.00 0.00 2.90
2248 4515 5.224135 TGTCGTCGAATTTGTCACTGATAA 58.776 37.500 0.00 0.00 0.00 1.75
2255 4522 8.328864 GTCGAATTTGTCACTGATAATAACCTC 58.671 37.037 0.00 0.00 0.00 3.85
2257 4524 8.331022 CGAATTTGTCACTGATAATAACCTCTG 58.669 37.037 0.00 0.00 0.00 3.35
2261 4528 5.874810 TGTCACTGATAATAACCTCTGTTGC 59.125 40.000 0.00 0.00 35.87 4.17
2291 4558 6.348786 CGATGTTTCACAAGTTGGATCTTCAT 60.349 38.462 7.96 4.88 0.00 2.57
2297 4564 4.216902 CACAAGTTGGATCTTCATGCTGAA 59.783 41.667 7.96 0.00 34.79 3.02
2320 4587 1.458486 CCCTAAACCTGGCCACACA 59.542 57.895 0.00 0.00 0.00 3.72
2352 4619 1.072965 ACCTTTCCTCCTTGCAGTCTG 59.927 52.381 0.00 0.00 0.00 3.51
2353 4620 1.072965 CCTTTCCTCCTTGCAGTCTGT 59.927 52.381 0.93 0.00 0.00 3.41
2354 4621 2.487986 CCTTTCCTCCTTGCAGTCTGTT 60.488 50.000 0.93 0.00 0.00 3.16
2355 4622 3.244561 CCTTTCCTCCTTGCAGTCTGTTA 60.245 47.826 0.93 0.00 0.00 2.41
2356 4623 3.685139 TTCCTCCTTGCAGTCTGTTAG 57.315 47.619 0.93 0.00 0.00 2.34
2357 4624 2.889512 TCCTCCTTGCAGTCTGTTAGA 58.110 47.619 0.93 0.00 0.00 2.10
2358 4625 3.239449 TCCTCCTTGCAGTCTGTTAGAA 58.761 45.455 0.93 0.00 0.00 2.10
2359 4626 3.259374 TCCTCCTTGCAGTCTGTTAGAAG 59.741 47.826 0.93 0.00 0.00 2.85
2360 4627 3.594134 CTCCTTGCAGTCTGTTAGAAGG 58.406 50.000 0.93 8.35 32.74 3.46
2361 4628 2.303022 TCCTTGCAGTCTGTTAGAAGGG 59.697 50.000 15.97 5.56 32.41 3.95
2362 4629 2.303022 CCTTGCAGTCTGTTAGAAGGGA 59.697 50.000 0.93 0.00 0.00 4.20
2363 4630 3.594134 CTTGCAGTCTGTTAGAAGGGAG 58.406 50.000 0.93 0.00 0.00 4.30
2364 4631 2.889512 TGCAGTCTGTTAGAAGGGAGA 58.110 47.619 0.93 0.00 0.00 3.71
2365 4632 2.828520 TGCAGTCTGTTAGAAGGGAGAG 59.171 50.000 0.93 0.00 0.00 3.20
2366 4633 3.093057 GCAGTCTGTTAGAAGGGAGAGA 58.907 50.000 0.93 0.00 0.00 3.10
2367 4634 3.130340 GCAGTCTGTTAGAAGGGAGAGAG 59.870 52.174 0.93 0.00 0.00 3.20
2368 4635 3.699038 CAGTCTGTTAGAAGGGAGAGAGG 59.301 52.174 0.00 0.00 0.00 3.69
2369 4636 3.335484 AGTCTGTTAGAAGGGAGAGAGGT 59.665 47.826 0.00 0.00 0.00 3.85
2370 4637 4.090819 GTCTGTTAGAAGGGAGAGAGGTT 58.909 47.826 0.00 0.00 0.00 3.50
2371 4638 4.528987 GTCTGTTAGAAGGGAGAGAGGTTT 59.471 45.833 0.00 0.00 0.00 3.27
2372 4639 5.012251 GTCTGTTAGAAGGGAGAGAGGTTTT 59.988 44.000 0.00 0.00 0.00 2.43
2373 4640 5.607171 TCTGTTAGAAGGGAGAGAGGTTTTT 59.393 40.000 0.00 0.00 0.00 1.94
2398 4665 1.498576 TGAGGATCAGAGAGAGAGGGG 59.501 57.143 0.00 0.00 42.56 4.79
2399 4666 1.499007 GAGGATCAGAGAGAGAGGGGT 59.501 57.143 0.00 0.00 33.17 4.95
2400 4667 1.936631 AGGATCAGAGAGAGAGGGGTT 59.063 52.381 0.00 0.00 0.00 4.11
2401 4668 2.317594 AGGATCAGAGAGAGAGGGGTTT 59.682 50.000 0.00 0.00 0.00 3.27
2402 4669 2.433970 GGATCAGAGAGAGAGGGGTTTG 59.566 54.545 0.00 0.00 0.00 2.93
2403 4670 1.944177 TCAGAGAGAGAGGGGTTTGG 58.056 55.000 0.00 0.00 0.00 3.28
2404 4671 1.150135 TCAGAGAGAGAGGGGTTTGGT 59.850 52.381 0.00 0.00 0.00 3.67
2405 4672 1.277557 CAGAGAGAGAGGGGTTTGGTG 59.722 57.143 0.00 0.00 0.00 4.17
2406 4673 0.615850 GAGAGAGAGGGGTTTGGTGG 59.384 60.000 0.00 0.00 0.00 4.61
2407 4674 0.193574 AGAGAGAGGGGTTTGGTGGA 59.806 55.000 0.00 0.00 0.00 4.02
2408 4675 1.064825 GAGAGAGGGGTTTGGTGGAA 58.935 55.000 0.00 0.00 0.00 3.53
2409 4676 1.636003 GAGAGAGGGGTTTGGTGGAAT 59.364 52.381 0.00 0.00 0.00 3.01
2410 4677 2.844348 GAGAGAGGGGTTTGGTGGAATA 59.156 50.000 0.00 0.00 0.00 1.75
2411 4678 2.846827 AGAGAGGGGTTTGGTGGAATAG 59.153 50.000 0.00 0.00 0.00 1.73
2412 4679 2.576648 GAGAGGGGTTTGGTGGAATAGT 59.423 50.000 0.00 0.00 0.00 2.12
2413 4680 2.993863 AGAGGGGTTTGGTGGAATAGTT 59.006 45.455 0.00 0.00 0.00 2.24
2414 4681 3.401342 AGAGGGGTTTGGTGGAATAGTTT 59.599 43.478 0.00 0.00 0.00 2.66
2415 4682 3.506398 AGGGGTTTGGTGGAATAGTTTG 58.494 45.455 0.00 0.00 0.00 2.93
2416 4683 3.141272 AGGGGTTTGGTGGAATAGTTTGA 59.859 43.478 0.00 0.00 0.00 2.69
2417 4684 4.093743 GGGGTTTGGTGGAATAGTTTGAT 58.906 43.478 0.00 0.00 0.00 2.57
2418 4685 4.081697 GGGGTTTGGTGGAATAGTTTGATG 60.082 45.833 0.00 0.00 0.00 3.07
2419 4686 4.526650 GGGTTTGGTGGAATAGTTTGATGT 59.473 41.667 0.00 0.00 0.00 3.06
2420 4687 5.712917 GGGTTTGGTGGAATAGTTTGATGTA 59.287 40.000 0.00 0.00 0.00 2.29
2421 4688 6.379988 GGGTTTGGTGGAATAGTTTGATGTAT 59.620 38.462 0.00 0.00 0.00 2.29
2422 4689 7.093509 GGGTTTGGTGGAATAGTTTGATGTATT 60.094 37.037 0.00 0.00 0.00 1.89
2423 4690 7.759433 GGTTTGGTGGAATAGTTTGATGTATTG 59.241 37.037 0.00 0.00 0.00 1.90
2424 4691 6.449635 TGGTGGAATAGTTTGATGTATTGC 57.550 37.500 0.00 0.00 0.00 3.56
2425 4692 6.186957 TGGTGGAATAGTTTGATGTATTGCT 58.813 36.000 0.00 0.00 30.55 3.91
2426 4693 6.663093 TGGTGGAATAGTTTGATGTATTGCTT 59.337 34.615 0.00 0.00 30.55 3.91
2427 4694 6.974622 GGTGGAATAGTTTGATGTATTGCTTG 59.025 38.462 0.00 0.00 30.55 4.01
2428 4695 7.148086 GGTGGAATAGTTTGATGTATTGCTTGA 60.148 37.037 0.00 0.00 30.55 3.02
2429 4696 7.912250 GTGGAATAGTTTGATGTATTGCTTGAG 59.088 37.037 0.00 0.00 30.55 3.02
2430 4697 6.914757 GGAATAGTTTGATGTATTGCTTGAGC 59.085 38.462 0.00 0.00 42.50 4.26
2431 4698 4.708726 AGTTTGATGTATTGCTTGAGCC 57.291 40.909 0.00 0.00 41.18 4.70
2432 4699 4.338879 AGTTTGATGTATTGCTTGAGCCT 58.661 39.130 0.00 0.00 41.18 4.58
2433 4700 4.397417 AGTTTGATGTATTGCTTGAGCCTC 59.603 41.667 0.00 0.00 41.18 4.70
2434 4701 2.554142 TGATGTATTGCTTGAGCCTCG 58.446 47.619 0.00 0.00 41.18 4.63
2435 4702 2.093500 TGATGTATTGCTTGAGCCTCGT 60.093 45.455 0.00 0.00 41.18 4.18
2436 4703 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
2437 4704 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
2438 4705 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
2452 4719 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
2453 4720 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
2454 4721 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
2455 4722 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
2456 4723 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
2457 4724 7.295340 TCGTGGGCATATATATAGGAGTACAT 58.705 38.462 8.56 0.00 0.00 2.29
2458 4725 7.230712 TCGTGGGCATATATATAGGAGTACATG 59.769 40.741 8.56 6.35 0.00 3.21
2459 4726 7.230712 CGTGGGCATATATATAGGAGTACATGA 59.769 40.741 8.56 0.00 0.00 3.07
2460 4727 9.094578 GTGGGCATATATATAGGAGTACATGAT 57.905 37.037 8.56 0.00 0.00 2.45
2461 4728 9.314133 TGGGCATATATATAGGAGTACATGATC 57.686 37.037 8.56 0.00 0.00 2.92
2462 4729 9.540538 GGGCATATATATAGGAGTACATGATCT 57.459 37.037 8.56 0.00 0.00 2.75
2473 4740 8.228035 AGGAGTACATGATCTACTTGAAGTAC 57.772 38.462 0.00 0.00 0.00 2.73
2474 4741 7.834681 AGGAGTACATGATCTACTTGAAGTACA 59.165 37.037 0.00 0.00 0.00 2.90
2475 4742 8.467598 GGAGTACATGATCTACTTGAAGTACAA 58.532 37.037 0.00 0.00 36.97 2.41
2484 4751 2.356665 TTGAAGTACAAGGCAAGCCA 57.643 45.000 14.40 0.00 38.92 4.75
2485 4752 1.896220 TGAAGTACAAGGCAAGCCAG 58.104 50.000 14.40 7.89 38.92 4.85
2486 4753 1.419762 TGAAGTACAAGGCAAGCCAGA 59.580 47.619 14.40 0.00 38.92 3.86
2487 4754 2.158682 TGAAGTACAAGGCAAGCCAGAA 60.159 45.455 14.40 0.00 38.92 3.02
2488 4755 2.887151 AGTACAAGGCAAGCCAGAAT 57.113 45.000 14.40 0.00 38.92 2.40
2489 4756 4.261801 GAAGTACAAGGCAAGCCAGAATA 58.738 43.478 14.40 0.00 38.92 1.75
2490 4757 4.510167 AGTACAAGGCAAGCCAGAATAT 57.490 40.909 14.40 0.00 38.92 1.28
2491 4758 4.860022 AGTACAAGGCAAGCCAGAATATT 58.140 39.130 14.40 0.00 38.92 1.28
2492 4759 5.264395 AGTACAAGGCAAGCCAGAATATTT 58.736 37.500 14.40 0.00 38.92 1.40
2493 4760 4.725790 ACAAGGCAAGCCAGAATATTTC 57.274 40.909 14.40 0.00 38.92 2.17
2494 4761 3.448660 ACAAGGCAAGCCAGAATATTTCC 59.551 43.478 14.40 0.00 38.92 3.13
2495 4762 3.677156 AGGCAAGCCAGAATATTTCCT 57.323 42.857 14.40 0.00 38.92 3.36
2496 4763 4.796110 AGGCAAGCCAGAATATTTCCTA 57.204 40.909 14.40 0.00 38.92 2.94
2497 4764 4.723309 AGGCAAGCCAGAATATTTCCTAG 58.277 43.478 14.40 0.00 38.92 3.02
2498 4765 4.166919 AGGCAAGCCAGAATATTTCCTAGT 59.833 41.667 14.40 0.00 38.92 2.57
2499 4766 4.517075 GGCAAGCCAGAATATTTCCTAGTC 59.483 45.833 6.14 0.00 35.81 2.59
2500 4767 5.372373 GCAAGCCAGAATATTTCCTAGTCT 58.628 41.667 0.00 0.00 35.19 3.24
2501 4768 6.464465 GGCAAGCCAGAATATTTCCTAGTCTA 60.464 42.308 6.14 0.00 33.14 2.59
2502 4769 6.992715 GCAAGCCAGAATATTTCCTAGTCTAA 59.007 38.462 0.00 0.00 33.14 2.10
2503 4770 7.041712 GCAAGCCAGAATATTTCCTAGTCTAAC 60.042 40.741 0.00 0.00 33.14 2.34
2504 4771 7.068686 AGCCAGAATATTTCCTAGTCTAACC 57.931 40.000 0.00 0.00 33.14 2.85
2505 4772 6.847036 AGCCAGAATATTTCCTAGTCTAACCT 59.153 38.462 0.00 0.00 33.14 3.50
2506 4773 8.011290 AGCCAGAATATTTCCTAGTCTAACCTA 58.989 37.037 0.00 0.00 33.14 3.08
2507 4774 8.817876 GCCAGAATATTTCCTAGTCTAACCTAT 58.182 37.037 0.00 0.00 33.14 2.57
2514 4781 8.625467 ATTTCCTAGTCTAACCTATGTTTCCT 57.375 34.615 0.00 0.00 35.87 3.36
2515 4782 9.725206 ATTTCCTAGTCTAACCTATGTTTCCTA 57.275 33.333 0.00 0.00 35.87 2.94
2516 4783 9.551339 TTTCCTAGTCTAACCTATGTTTCCTAA 57.449 33.333 0.00 0.00 35.87 2.69
2517 4784 9.725206 TTCCTAGTCTAACCTATGTTTCCTAAT 57.275 33.333 0.00 0.00 35.87 1.73
2526 4793 8.433421 AACCTATGTTTCCTAATACAATCACG 57.567 34.615 0.00 0.00 0.00 4.35
2527 4794 7.562135 ACCTATGTTTCCTAATACAATCACGT 58.438 34.615 0.00 0.00 0.00 4.49
2528 4795 8.044908 ACCTATGTTTCCTAATACAATCACGTT 58.955 33.333 0.00 0.00 0.00 3.99
2529 4796 9.537192 CCTATGTTTCCTAATACAATCACGTTA 57.463 33.333 0.00 0.00 0.00 3.18
2532 4799 8.470040 TGTTTCCTAATACAATCACGTTACTC 57.530 34.615 0.00 0.00 0.00 2.59
2533 4800 8.089597 TGTTTCCTAATACAATCACGTTACTCA 58.910 33.333 0.00 0.00 0.00 3.41
2534 4801 8.928733 GTTTCCTAATACAATCACGTTACTCAA 58.071 33.333 0.00 0.00 0.00 3.02
2535 4802 8.470040 TTCCTAATACAATCACGTTACTCAAC 57.530 34.615 0.00 0.00 0.00 3.18
2536 4803 7.604549 TCCTAATACAATCACGTTACTCAACA 58.395 34.615 0.00 0.00 34.05 3.33
2537 4804 8.255206 TCCTAATACAATCACGTTACTCAACAT 58.745 33.333 0.00 0.00 34.05 2.71
2538 4805 8.540492 CCTAATACAATCACGTTACTCAACATC 58.460 37.037 0.00 0.00 34.05 3.06
2539 4806 6.903883 ATACAATCACGTTACTCAACATCC 57.096 37.500 0.00 0.00 34.05 3.51
2540 4807 4.000988 ACAATCACGTTACTCAACATCCC 58.999 43.478 0.00 0.00 34.05 3.85
2541 4808 4.253685 CAATCACGTTACTCAACATCCCT 58.746 43.478 0.00 0.00 34.05 4.20
2542 4809 3.587797 TCACGTTACTCAACATCCCTC 57.412 47.619 0.00 0.00 34.05 4.30
2543 4810 2.232941 TCACGTTACTCAACATCCCTCC 59.767 50.000 0.00 0.00 34.05 4.30
2544 4811 1.203994 ACGTTACTCAACATCCCTCCG 59.796 52.381 0.00 0.00 34.05 4.63
2545 4812 1.653151 GTTACTCAACATCCCTCCGC 58.347 55.000 0.00 0.00 34.60 5.54
2546 4813 1.066430 GTTACTCAACATCCCTCCGCA 60.066 52.381 0.00 0.00 34.60 5.69
2547 4814 0.824109 TACTCAACATCCCTCCGCAG 59.176 55.000 0.00 0.00 0.00 5.18
2548 4815 1.194781 ACTCAACATCCCTCCGCAGT 61.195 55.000 0.00 0.00 0.00 4.40
2549 4816 0.460987 CTCAACATCCCTCCGCAGTC 60.461 60.000 0.00 0.00 0.00 3.51
2550 4817 1.191489 TCAACATCCCTCCGCAGTCA 61.191 55.000 0.00 0.00 0.00 3.41
2551 4818 1.021390 CAACATCCCTCCGCAGTCAC 61.021 60.000 0.00 0.00 0.00 3.67
2552 4819 1.480212 AACATCCCTCCGCAGTCACA 61.480 55.000 0.00 0.00 0.00 3.58
2553 4820 1.296392 CATCCCTCCGCAGTCACAA 59.704 57.895 0.00 0.00 0.00 3.33
2554 4821 1.021390 CATCCCTCCGCAGTCACAAC 61.021 60.000 0.00 0.00 0.00 3.32
2555 4822 2.507110 ATCCCTCCGCAGTCACAACG 62.507 60.000 0.00 0.00 0.00 4.10
2557 4824 2.029073 CTCCGCAGTCACAACGGT 59.971 61.111 8.23 0.00 46.92 4.83
2558 4825 1.287815 CTCCGCAGTCACAACGGTA 59.712 57.895 8.23 0.00 46.92 4.02
2559 4826 0.732880 CTCCGCAGTCACAACGGTAG 60.733 60.000 8.23 2.10 46.92 3.18
2560 4827 2.380410 CCGCAGTCACAACGGTAGC 61.380 63.158 0.43 0.00 42.01 3.58
2561 4828 2.716828 CGCAGTCACAACGGTAGCG 61.717 63.158 13.69 13.69 37.68 4.26
2562 4829 1.372499 GCAGTCACAACGGTAGCGA 60.372 57.895 22.88 0.00 0.00 4.93
2563 4830 1.615107 GCAGTCACAACGGTAGCGAC 61.615 60.000 22.88 8.20 0.00 5.19
2564 4831 1.081641 AGTCACAACGGTAGCGACG 60.082 57.895 22.88 13.36 37.36 5.12
2565 4832 2.429571 TCACAACGGTAGCGACGC 60.430 61.111 22.88 13.03 34.00 5.19
2566 4833 2.731721 CACAACGGTAGCGACGCA 60.732 61.111 23.70 5.17 34.00 5.24
2567 4834 2.430244 ACAACGGTAGCGACGCAG 60.430 61.111 23.70 12.40 34.00 5.18
2568 4835 2.126618 CAACGGTAGCGACGCAGA 60.127 61.111 23.70 6.47 34.00 4.26
2569 4836 2.126580 AACGGTAGCGACGCAGAC 60.127 61.111 23.70 18.49 34.00 3.51
2576 4843 4.400109 GCGACGCAGACGGTGAGA 62.400 66.667 16.42 0.00 46.96 3.27
2577 4844 2.502080 CGACGCAGACGGTGAGAC 60.502 66.667 0.00 0.00 46.04 3.36
2578 4845 2.955402 GACGCAGACGGTGAGACT 59.045 61.111 0.00 0.00 46.04 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.426837 ACAACATGAAAATAATTGGATGACAAG 57.573 29.630 0.00 0.00 43.48 3.16
40 41 5.639506 GCATCACTTCTAGTCTTGCTTAACA 59.360 40.000 0.00 0.00 33.01 2.41
44 45 4.252073 CTGCATCACTTCTAGTCTTGCTT 58.748 43.478 10.20 0.00 35.38 3.91
49 50 4.281941 TCAACACTGCATCACTTCTAGTCT 59.718 41.667 0.00 0.00 0.00 3.24
51 52 4.607293 TCAACACTGCATCACTTCTAGT 57.393 40.909 0.00 0.00 0.00 2.57
59 60 1.913778 ATGCCTTCAACACTGCATCA 58.086 45.000 0.00 0.00 40.21 3.07
60 61 2.029649 ACAATGCCTTCAACACTGCATC 60.030 45.455 0.00 0.00 43.23 3.91
122 123 0.458669 TCGTTGCCCGGTCTAAGATC 59.541 55.000 0.00 0.00 37.11 2.75
129 130 2.505557 CGTAGTCGTTGCCCGGTC 60.506 66.667 0.00 0.00 37.11 4.79
133 134 1.666872 ACAAGCGTAGTCGTTGCCC 60.667 57.895 0.00 0.00 39.49 5.36
139 140 1.350193 AAGATGCACAAGCGTAGTCG 58.650 50.000 0.00 0.00 46.23 4.18
142 143 2.744202 AGGAAAAGATGCACAAGCGTAG 59.256 45.455 0.00 0.00 46.23 3.51
145 146 2.227388 AGAAGGAAAAGATGCACAAGCG 59.773 45.455 0.00 0.00 46.23 4.68
146 147 3.930634 AGAAGGAAAAGATGCACAAGC 57.069 42.857 0.00 0.00 42.57 4.01
156 157 3.120165 GCAACGCCTCTAAGAAGGAAAAG 60.120 47.826 0.00 0.00 38.87 2.27
157 158 2.812011 GCAACGCCTCTAAGAAGGAAAA 59.188 45.455 0.00 0.00 38.87 2.29
161 162 2.100605 AAGCAACGCCTCTAAGAAGG 57.899 50.000 0.00 0.00 39.62 3.46
162 163 3.498397 TCAAAAGCAACGCCTCTAAGAAG 59.502 43.478 0.00 0.00 0.00 2.85
168 169 1.967319 TCTTCAAAAGCAACGCCTCT 58.033 45.000 0.00 0.00 0.00 3.69
189 190 4.069304 CAACACCCGGAATACAAAAGAGA 58.931 43.478 0.73 0.00 0.00 3.10
192 193 3.818773 AGACAACACCCGGAATACAAAAG 59.181 43.478 0.73 0.00 0.00 2.27
202 203 0.105964 TCACTGAAGACAACACCCGG 59.894 55.000 0.00 0.00 0.00 5.73
204 205 2.154462 CCATCACTGAAGACAACACCC 58.846 52.381 0.00 0.00 0.00 4.61
216 217 1.723220 CAGCACTCTGACCATCACTG 58.277 55.000 0.00 0.00 42.95 3.66
217 218 0.036577 GCAGCACTCTGACCATCACT 60.037 55.000 0.00 0.00 42.95 3.41
221 222 0.910338 ATCAGCAGCACTCTGACCAT 59.090 50.000 0.00 0.00 42.63 3.55
226 227 1.134759 ACTAGCATCAGCAGCACTCTG 60.135 52.381 0.00 0.00 45.49 3.35
289 290 9.646427 GGATACACACAGCCAAAAATTAAATAA 57.354 29.630 0.00 0.00 0.00 1.40
290 291 9.030452 AGGATACACACAGCCAAAAATTAAATA 57.970 29.630 0.00 0.00 41.41 1.40
291 292 7.906327 AGGATACACACAGCCAAAAATTAAAT 58.094 30.769 0.00 0.00 41.41 1.40
292 293 7.296628 AGGATACACACAGCCAAAAATTAAA 57.703 32.000 0.00 0.00 41.41 1.52
293 294 6.909550 AGGATACACACAGCCAAAAATTAA 57.090 33.333 0.00 0.00 41.41 1.40
294 295 6.491745 TCAAGGATACACACAGCCAAAAATTA 59.508 34.615 0.00 0.00 41.41 1.40
295 296 5.304101 TCAAGGATACACACAGCCAAAAATT 59.696 36.000 0.00 0.00 41.41 1.82
296 297 4.832266 TCAAGGATACACACAGCCAAAAAT 59.168 37.500 0.00 0.00 41.41 1.82
297 298 4.211125 TCAAGGATACACACAGCCAAAAA 58.789 39.130 0.00 0.00 41.41 1.94
303 304 3.866651 AGACATCAAGGATACACACAGC 58.133 45.455 0.00 0.00 41.41 4.40
306 307 6.801539 TTCAAAGACATCAAGGATACACAC 57.198 37.500 0.00 0.00 41.41 3.82
327 328 9.057089 CCAGGTCTTTATACCAACAAGATATTC 57.943 37.037 0.00 0.00 42.40 1.75
328 329 8.557450 ACCAGGTCTTTATACCAACAAGATATT 58.443 33.333 0.00 0.00 42.40 1.28
330 331 7.504926 ACCAGGTCTTTATACCAACAAGATA 57.495 36.000 0.00 0.00 42.40 1.98
333 334 7.989416 TTTACCAGGTCTTTATACCAACAAG 57.011 36.000 0.00 0.00 42.40 3.16
351 352 5.327616 TCGTGAAGATACCGATTTTACCA 57.672 39.130 0.00 0.00 0.00 3.25
355 356 8.833231 ATGAATATCGTGAAGATACCGATTTT 57.167 30.769 0.00 0.00 43.93 1.82
370 371 9.794719 TCGATAGAGGGAATATATGAATATCGT 57.205 33.333 15.23 0.00 42.67 3.73
390 391 3.553511 ACTGCATCGCTTCTTTTCGATAG 59.446 43.478 0.00 0.00 42.73 2.08
392 393 2.094894 CACTGCATCGCTTCTTTTCGAT 59.905 45.455 0.00 0.00 45.11 3.59
415 416 7.063662 TGTTATGTTCACGCGATGTTAATTAGT 59.936 33.333 15.93 0.00 0.00 2.24
423 424 3.064207 ACTTGTTATGTTCACGCGATGT 58.936 40.909 15.93 0.00 0.00 3.06
440 441 7.429633 ACTTCATACTGAGATCGGATTACTTG 58.570 38.462 0.00 0.00 0.00 3.16
443 444 7.113684 CGAAACTTCATACTGAGATCGGATTAC 59.886 40.741 0.00 0.00 0.00 1.89
461 488 7.968956 TCAGACTAATCATCTACACGAAACTTC 59.031 37.037 0.00 0.00 0.00 3.01
467 494 7.120726 TCAACTTCAGACTAATCATCTACACGA 59.879 37.037 0.00 0.00 0.00 4.35
471 498 9.979578 ATCATCAACTTCAGACTAATCATCTAC 57.020 33.333 0.00 0.00 0.00 2.59
473 500 9.902684 AAATCATCAACTTCAGACTAATCATCT 57.097 29.630 0.00 0.00 0.00 2.90
474 501 9.932699 CAAATCATCAACTTCAGACTAATCATC 57.067 33.333 0.00 0.00 0.00 2.92
475 502 8.900781 CCAAATCATCAACTTCAGACTAATCAT 58.099 33.333 0.00 0.00 0.00 2.45
476 503 7.148188 GCCAAATCATCAACTTCAGACTAATCA 60.148 37.037 0.00 0.00 0.00 2.57
477 504 7.066766 AGCCAAATCATCAACTTCAGACTAATC 59.933 37.037 0.00 0.00 0.00 1.75
478 505 6.888632 AGCCAAATCATCAACTTCAGACTAAT 59.111 34.615 0.00 0.00 0.00 1.73
479 506 6.240894 AGCCAAATCATCAACTTCAGACTAA 58.759 36.000 0.00 0.00 0.00 2.24
480 507 5.809001 AGCCAAATCATCAACTTCAGACTA 58.191 37.500 0.00 0.00 0.00 2.59
481 508 4.660168 AGCCAAATCATCAACTTCAGACT 58.340 39.130 0.00 0.00 0.00 3.24
482 509 4.142513 GGAGCCAAATCATCAACTTCAGAC 60.143 45.833 0.00 0.00 0.00 3.51
483 510 4.012374 GGAGCCAAATCATCAACTTCAGA 58.988 43.478 0.00 0.00 0.00 3.27
484 511 4.015084 AGGAGCCAAATCATCAACTTCAG 58.985 43.478 0.00 0.00 0.00 3.02
485 512 4.038271 AGGAGCCAAATCATCAACTTCA 57.962 40.909 0.00 0.00 0.00 3.02
486 513 5.189180 ACTAGGAGCCAAATCATCAACTTC 58.811 41.667 0.00 0.00 0.00 3.01
487 514 5.184892 ACTAGGAGCCAAATCATCAACTT 57.815 39.130 0.00 0.00 0.00 2.66
488 515 4.851639 ACTAGGAGCCAAATCATCAACT 57.148 40.909 0.00 0.00 0.00 3.16
489 516 4.336713 GGAACTAGGAGCCAAATCATCAAC 59.663 45.833 0.00 0.00 0.00 3.18
490 517 4.018506 TGGAACTAGGAGCCAAATCATCAA 60.019 41.667 0.00 0.00 0.00 2.57
491 518 3.523157 TGGAACTAGGAGCCAAATCATCA 59.477 43.478 0.00 0.00 0.00 3.07
492 519 3.879892 GTGGAACTAGGAGCCAAATCATC 59.120 47.826 0.00 0.00 32.68 2.92
493 520 3.266772 TGTGGAACTAGGAGCCAAATCAT 59.733 43.478 0.00 0.00 38.04 2.45
494 521 2.642311 TGTGGAACTAGGAGCCAAATCA 59.358 45.455 0.00 0.00 38.04 2.57
495 522 3.010420 GTGTGGAACTAGGAGCCAAATC 58.990 50.000 0.00 0.00 38.04 2.17
496 523 2.644798 AGTGTGGAACTAGGAGCCAAAT 59.355 45.455 0.00 0.00 37.36 2.32
497 524 2.054799 AGTGTGGAACTAGGAGCCAAA 58.945 47.619 0.00 0.00 37.36 3.28
498 525 1.729586 AGTGTGGAACTAGGAGCCAA 58.270 50.000 0.00 0.00 37.36 4.52
499 526 1.623811 GAAGTGTGGAACTAGGAGCCA 59.376 52.381 0.00 0.00 38.56 4.75
500 527 1.066071 GGAAGTGTGGAACTAGGAGCC 60.066 57.143 0.00 0.00 38.56 4.70
501 528 1.623811 TGGAAGTGTGGAACTAGGAGC 59.376 52.381 0.00 0.00 38.56 4.70
502 529 2.028020 GGTGGAAGTGTGGAACTAGGAG 60.028 54.545 0.00 0.00 38.56 3.69
536 563 1.134220 ACCGTCCTTCTTGCAACAAGA 60.134 47.619 15.20 5.94 0.00 3.02
537 564 1.002468 CACCGTCCTTCTTGCAACAAG 60.002 52.381 7.43 7.43 0.00 3.16
539 566 1.444119 GCACCGTCCTTCTTGCAACA 61.444 55.000 0.00 0.00 34.97 3.33
540 567 1.282875 GCACCGTCCTTCTTGCAAC 59.717 57.895 0.00 0.00 34.97 4.17
556 583 4.182433 TCTTGGCGGGTGTGTGCA 62.182 61.111 0.00 0.00 0.00 4.57
619 646 3.077484 AGATATTTGGATGGATGGCGG 57.923 47.619 0.00 0.00 0.00 6.13
772 806 0.672401 TTTGTAGAAAGGCGCTCCCG 60.672 55.000 7.64 0.00 39.21 5.14
785 820 1.625616 CGCGGGAGTGTACTTTGTAG 58.374 55.000 0.00 0.00 35.16 2.74
803 838 3.286751 CTGTGGGGTGGTGTTGCG 61.287 66.667 0.00 0.00 0.00 4.85
804 839 1.454847 TTCTGTGGGGTGGTGTTGC 60.455 57.895 0.00 0.00 0.00 4.17
898 933 1.030488 ATGCCTGTGCTAAGCTGCTG 61.030 55.000 1.35 0.00 38.71 4.41
936 978 0.523072 CCCAACGCTGGATGTTTCAG 59.477 55.000 6.38 0.00 46.92 3.02
959 1001 4.316823 AGAGGAGGCGTCCACCCA 62.317 66.667 26.40 0.00 46.80 4.51
969 1030 4.022603 TGATGAAGTTGAGAGAGAGGAGG 58.977 47.826 0.00 0.00 0.00 4.30
1050 1130 4.222353 TGGTCTTGGAGAGCAGCT 57.778 55.556 0.00 0.00 46.53 4.24
1222 1302 4.690719 TGCGACCGCGGTTCCAAT 62.691 61.111 34.65 8.11 45.51 3.16
1553 1648 1.002366 GATGACCACAGTGATCGTGC 58.998 55.000 0.62 0.00 32.85 5.34
1631 1729 1.404717 CGCATACAGAACAGTGCTCCT 60.405 52.381 0.00 0.00 35.52 3.69
1646 1744 4.099419 TGATTCTACAAGAGCTTCCGCATA 59.901 41.667 0.00 0.00 39.10 3.14
1759 3985 5.909621 ATTTACAGTGAGCAAATGAGCAT 57.090 34.783 0.00 0.00 36.85 3.79
1799 4025 9.762933 CCTTTCCAAAAGAAAAATGTTCTATGA 57.237 29.630 1.06 0.00 43.84 2.15
1804 4030 5.530915 CCCCCTTTCCAAAAGAAAAATGTTC 59.469 40.000 1.06 0.00 43.84 3.18
1854 4081 7.012704 CCAATAATATAGGGCTGTGTGCATATC 59.987 40.741 0.00 0.00 45.15 1.63
1932 4159 1.148157 AGCCGATTCGTTCTGCATCG 61.148 55.000 5.20 0.00 37.06 3.84
1938 4165 3.536956 TTATGGAAGCCGATTCGTTCT 57.463 42.857 5.20 0.00 38.95 3.01
1953 4180 4.322725 GCCTCAGGTTTTCCCTTTTTATGG 60.323 45.833 0.00 0.00 42.73 2.74
2016 4282 0.468648 GCCCCGGAGTAGCATAGTTT 59.531 55.000 0.73 0.00 0.00 2.66
2019 4285 0.468226 TTTGCCCCGGAGTAGCATAG 59.532 55.000 0.73 0.00 36.20 2.23
2020 4286 0.468226 CTTTGCCCCGGAGTAGCATA 59.532 55.000 0.73 0.74 36.20 3.14
2021 4287 1.224592 CTTTGCCCCGGAGTAGCAT 59.775 57.895 0.73 0.00 36.20 3.79
2022 4288 2.668632 CTTTGCCCCGGAGTAGCA 59.331 61.111 0.73 3.24 33.97 3.49
2023 4289 2.824489 GCTTTGCCCCGGAGTAGC 60.824 66.667 0.73 0.00 0.00 3.58
2024 4290 2.124695 GGCTTTGCCCCGGAGTAG 60.125 66.667 0.73 0.00 44.06 2.57
2048 4315 1.299014 CAACGCGTGCACACCAATT 60.299 52.632 14.98 0.21 0.00 2.32
2052 4319 2.127270 CATCAACGCGTGCACACC 60.127 61.111 14.98 6.02 0.00 4.16
2057 4324 0.722469 CTGTCAACATCAACGCGTGC 60.722 55.000 14.98 0.00 0.00 5.34
2060 4327 0.586319 AACCTGTCAACATCAACGCG 59.414 50.000 3.53 3.53 0.00 6.01
2062 4329 4.929211 TGATAGAACCTGTCAACATCAACG 59.071 41.667 0.00 0.00 29.08 4.10
2065 4332 5.013079 ACCTTGATAGAACCTGTCAACATCA 59.987 40.000 2.67 0.00 36.84 3.07
2081 4348 6.214615 TGAAAGTCCCATGTTAGACCTTGATA 59.785 38.462 4.63 0.00 33.29 2.15
2083 4350 4.349636 TGAAAGTCCCATGTTAGACCTTGA 59.650 41.667 4.63 0.00 33.29 3.02
2092 4359 2.436417 CGGTGATGAAAGTCCCATGTT 58.564 47.619 0.00 0.00 0.00 2.71
2098 4365 1.079503 GAGTGCGGTGATGAAAGTCC 58.920 55.000 0.00 0.00 0.00 3.85
2113 4380 3.438360 GTGTTGGTTTGAAGCTTGAGTG 58.562 45.455 2.10 0.00 0.00 3.51
2115 4382 2.689983 AGGTGTTGGTTTGAAGCTTGAG 59.310 45.455 2.10 0.00 0.00 3.02
2124 4391 4.448537 TCTTGTTGAAGGTGTTGGTTTG 57.551 40.909 0.00 0.00 0.00 2.93
2125 4392 4.282195 TGTTCTTGTTGAAGGTGTTGGTTT 59.718 37.500 0.00 0.00 35.01 3.27
2126 4393 3.829601 TGTTCTTGTTGAAGGTGTTGGTT 59.170 39.130 0.00 0.00 35.01 3.67
2127 4394 3.426615 TGTTCTTGTTGAAGGTGTTGGT 58.573 40.909 0.00 0.00 35.01 3.67
2128 4395 4.142182 ACATGTTCTTGTTGAAGGTGTTGG 60.142 41.667 0.00 0.00 35.01 3.77
2157 4424 3.889196 TTTCAGGTAATGTTCGTGTGC 57.111 42.857 0.00 0.00 0.00 4.57
2161 4428 7.549488 CCTTTCTCTATTTCAGGTAATGTTCGT 59.451 37.037 0.00 0.00 0.00 3.85
2163 4430 8.047310 TCCCTTTCTCTATTTCAGGTAATGTTC 58.953 37.037 0.00 0.00 0.00 3.18
2168 4435 7.808279 TCTTCCCTTTCTCTATTTCAGGTAA 57.192 36.000 0.00 0.00 0.00 2.85
2173 4440 5.104941 TGCGATCTTCCCTTTCTCTATTTCA 60.105 40.000 0.00 0.00 0.00 2.69
2174 4441 5.360591 TGCGATCTTCCCTTTCTCTATTTC 58.639 41.667 0.00 0.00 0.00 2.17
2180 4447 2.911484 ACATGCGATCTTCCCTTTCTC 58.089 47.619 0.00 0.00 0.00 2.87
2181 4448 3.356529 AACATGCGATCTTCCCTTTCT 57.643 42.857 0.00 0.00 0.00 2.52
2184 4451 3.191371 GTGAAAACATGCGATCTTCCCTT 59.809 43.478 0.00 0.00 0.00 3.95
2197 4464 3.560068 GTGTGTTCTCCTCGTGAAAACAT 59.440 43.478 3.30 0.00 41.76 2.71
2198 4465 2.933906 GTGTGTTCTCCTCGTGAAAACA 59.066 45.455 0.00 0.00 38.78 2.83
2205 4472 3.321111 ACAAGTATGTGTGTTCTCCTCGT 59.679 43.478 0.00 0.00 38.69 4.18
2213 4480 3.358707 TCGACGACAAGTATGTGTGTT 57.641 42.857 0.00 0.00 40.74 3.32
2215 4482 4.903638 AATTCGACGACAAGTATGTGTG 57.096 40.909 0.00 0.00 40.74 3.82
2229 4496 8.197988 AGGTTATTATCAGTGACAAATTCGAC 57.802 34.615 0.00 0.00 0.00 4.20
2246 4513 3.702548 TCGCTAGGCAACAGAGGTTATTA 59.297 43.478 0.00 0.00 34.87 0.98
2248 4515 2.108168 TCGCTAGGCAACAGAGGTTAT 58.892 47.619 0.00 0.00 34.87 1.89
2255 4522 2.076100 TGAAACATCGCTAGGCAACAG 58.924 47.619 0.00 0.00 41.41 3.16
2257 4524 1.804151 TGTGAAACATCGCTAGGCAAC 59.196 47.619 0.00 0.00 45.67 4.17
2304 4571 1.608590 CACTTGTGTGGCCAGGTTTAG 59.391 52.381 5.11 2.66 40.33 1.85
2307 4574 4.258206 CACTTGTGTGGCCAGGTT 57.742 55.556 5.11 0.00 40.33 3.50
2320 4587 2.658807 GGAAAGGTCCTTGTCCACTT 57.341 50.000 19.84 0.00 41.24 3.16
2341 4608 2.303022 TCCCTTCTAACAGACTGCAAGG 59.697 50.000 1.25 8.89 39.30 3.61
2345 4612 3.093057 TCTCTCCCTTCTAACAGACTGC 58.907 50.000 1.25 0.00 0.00 4.40
2374 4641 4.469227 CCCTCTCTCTCTGATCCTCAAAAA 59.531 45.833 0.00 0.00 0.00 1.94
2375 4642 4.029520 CCCTCTCTCTCTGATCCTCAAAA 58.970 47.826 0.00 0.00 0.00 2.44
2376 4643 3.629539 CCCCTCTCTCTCTGATCCTCAAA 60.630 52.174 0.00 0.00 0.00 2.69
2377 4644 2.091389 CCCCTCTCTCTCTGATCCTCAA 60.091 54.545 0.00 0.00 0.00 3.02
2378 4645 1.498576 CCCCTCTCTCTCTGATCCTCA 59.501 57.143 0.00 0.00 0.00 3.86
2379 4646 1.499007 ACCCCTCTCTCTCTGATCCTC 59.501 57.143 0.00 0.00 0.00 3.71
2380 4647 1.619298 ACCCCTCTCTCTCTGATCCT 58.381 55.000 0.00 0.00 0.00 3.24
2381 4648 2.433970 CAAACCCCTCTCTCTCTGATCC 59.566 54.545 0.00 0.00 0.00 3.36
2382 4649 2.433970 CCAAACCCCTCTCTCTCTGATC 59.566 54.545 0.00 0.00 0.00 2.92
2383 4650 2.225753 ACCAAACCCCTCTCTCTCTGAT 60.226 50.000 0.00 0.00 0.00 2.90
2384 4651 1.150135 ACCAAACCCCTCTCTCTCTGA 59.850 52.381 0.00 0.00 0.00 3.27
2385 4652 1.277557 CACCAAACCCCTCTCTCTCTG 59.722 57.143 0.00 0.00 0.00 3.35
2386 4653 1.650528 CACCAAACCCCTCTCTCTCT 58.349 55.000 0.00 0.00 0.00 3.10
2387 4654 0.615850 CCACCAAACCCCTCTCTCTC 59.384 60.000 0.00 0.00 0.00 3.20
2388 4655 0.193574 TCCACCAAACCCCTCTCTCT 59.806 55.000 0.00 0.00 0.00 3.10
2389 4656 1.064825 TTCCACCAAACCCCTCTCTC 58.935 55.000 0.00 0.00 0.00 3.20
2390 4657 1.760405 ATTCCACCAAACCCCTCTCT 58.240 50.000 0.00 0.00 0.00 3.10
2391 4658 2.576648 ACTATTCCACCAAACCCCTCTC 59.423 50.000 0.00 0.00 0.00 3.20
2392 4659 2.644151 ACTATTCCACCAAACCCCTCT 58.356 47.619 0.00 0.00 0.00 3.69
2393 4660 3.451402 AACTATTCCACCAAACCCCTC 57.549 47.619 0.00 0.00 0.00 4.30
2394 4661 3.141272 TCAAACTATTCCACCAAACCCCT 59.859 43.478 0.00 0.00 0.00 4.79
2395 4662 3.502356 TCAAACTATTCCACCAAACCCC 58.498 45.455 0.00 0.00 0.00 4.95
2396 4663 4.526650 ACATCAAACTATTCCACCAAACCC 59.473 41.667 0.00 0.00 0.00 4.11
2397 4664 5.722021 ACATCAAACTATTCCACCAAACC 57.278 39.130 0.00 0.00 0.00 3.27
2398 4665 7.275560 GCAATACATCAAACTATTCCACCAAAC 59.724 37.037 0.00 0.00 0.00 2.93
2399 4666 7.178274 AGCAATACATCAAACTATTCCACCAAA 59.822 33.333 0.00 0.00 0.00 3.28
2400 4667 6.663093 AGCAATACATCAAACTATTCCACCAA 59.337 34.615 0.00 0.00 0.00 3.67
2401 4668 6.186957 AGCAATACATCAAACTATTCCACCA 58.813 36.000 0.00 0.00 0.00 4.17
2402 4669 6.699575 AGCAATACATCAAACTATTCCACC 57.300 37.500 0.00 0.00 0.00 4.61
2403 4670 7.761409 TCAAGCAATACATCAAACTATTCCAC 58.239 34.615 0.00 0.00 0.00 4.02
2404 4671 7.415541 GCTCAAGCAATACATCAAACTATTCCA 60.416 37.037 0.00 0.00 41.59 3.53
2405 4672 6.914757 GCTCAAGCAATACATCAAACTATTCC 59.085 38.462 0.00 0.00 41.59 3.01
2406 4673 6.914757 GGCTCAAGCAATACATCAAACTATTC 59.085 38.462 4.13 0.00 44.36 1.75
2407 4674 6.604795 AGGCTCAAGCAATACATCAAACTATT 59.395 34.615 4.13 0.00 44.36 1.73
2408 4675 6.125029 AGGCTCAAGCAATACATCAAACTAT 58.875 36.000 4.13 0.00 44.36 2.12
2409 4676 5.500234 AGGCTCAAGCAATACATCAAACTA 58.500 37.500 4.13 0.00 44.36 2.24
2410 4677 4.338879 AGGCTCAAGCAATACATCAAACT 58.661 39.130 4.13 0.00 44.36 2.66
2411 4678 4.666237 GAGGCTCAAGCAATACATCAAAC 58.334 43.478 10.25 0.00 44.36 2.93
2412 4679 3.374988 CGAGGCTCAAGCAATACATCAAA 59.625 43.478 15.95 0.00 44.36 2.69
2413 4680 2.938451 CGAGGCTCAAGCAATACATCAA 59.062 45.455 15.95 0.00 44.36 2.57
2414 4681 2.093500 ACGAGGCTCAAGCAATACATCA 60.093 45.455 15.95 0.00 44.36 3.07
2415 4682 2.286294 CACGAGGCTCAAGCAATACATC 59.714 50.000 15.95 0.00 44.36 3.06
2416 4683 2.283298 CACGAGGCTCAAGCAATACAT 58.717 47.619 15.95 0.00 44.36 2.29
2417 4684 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
2418 4685 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
2419 4686 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
2420 4687 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
2421 4688 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
2430 4697 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
2431 4698 6.771267 TGTACTCCTATATATATGCCCACGAG 59.229 42.308 5.44 4.01 0.00 4.18
2432 4699 6.665695 TGTACTCCTATATATATGCCCACGA 58.334 40.000 5.44 0.00 0.00 4.35
2433 4700 6.954487 TGTACTCCTATATATATGCCCACG 57.046 41.667 5.44 0.00 0.00 4.94
2434 4701 8.478775 TCATGTACTCCTATATATATGCCCAC 57.521 38.462 5.44 0.00 0.00 4.61
2435 4702 9.314133 GATCATGTACTCCTATATATATGCCCA 57.686 37.037 5.44 0.00 0.00 5.36
2436 4703 9.540538 AGATCATGTACTCCTATATATATGCCC 57.459 37.037 5.44 0.00 0.00 5.36
2447 4714 9.339850 GTACTTCAAGTAGATCATGTACTCCTA 57.660 37.037 0.00 0.00 30.12 2.94
2448 4715 7.834681 TGTACTTCAAGTAGATCATGTACTCCT 59.165 37.037 0.00 0.00 30.12 3.69
2449 4716 7.997482 TGTACTTCAAGTAGATCATGTACTCC 58.003 38.462 0.00 0.00 30.12 3.85
2450 4717 9.509855 CTTGTACTTCAAGTAGATCATGTACTC 57.490 37.037 0.00 0.00 45.89 2.59
2465 4732 2.158682 TCTGGCTTGCCTTGTACTTCAA 60.159 45.455 13.18 0.00 34.61 2.69
2466 4733 1.419762 TCTGGCTTGCCTTGTACTTCA 59.580 47.619 13.18 0.00 0.00 3.02
2467 4734 2.185004 TCTGGCTTGCCTTGTACTTC 57.815 50.000 13.18 0.00 0.00 3.01
2468 4735 2.656947 TTCTGGCTTGCCTTGTACTT 57.343 45.000 13.18 0.00 0.00 2.24
2469 4736 2.887151 ATTCTGGCTTGCCTTGTACT 57.113 45.000 13.18 0.00 0.00 2.73
2470 4737 5.450550 GGAAATATTCTGGCTTGCCTTGTAC 60.451 44.000 13.18 0.00 0.00 2.90
2471 4738 4.644685 GGAAATATTCTGGCTTGCCTTGTA 59.355 41.667 13.18 0.81 0.00 2.41
2472 4739 3.448660 GGAAATATTCTGGCTTGCCTTGT 59.551 43.478 13.18 0.00 0.00 3.16
2473 4740 3.703052 AGGAAATATTCTGGCTTGCCTTG 59.297 43.478 13.18 6.10 0.00 3.61
2474 4741 3.986435 AGGAAATATTCTGGCTTGCCTT 58.014 40.909 13.18 0.00 0.00 4.35
2475 4742 3.677156 AGGAAATATTCTGGCTTGCCT 57.323 42.857 13.18 0.00 0.00 4.75
2476 4743 4.464947 ACTAGGAAATATTCTGGCTTGCC 58.535 43.478 4.43 4.43 0.00 4.52
2477 4744 5.372373 AGACTAGGAAATATTCTGGCTTGC 58.628 41.667 0.00 0.00 0.00 4.01
2478 4745 7.442666 GGTTAGACTAGGAAATATTCTGGCTTG 59.557 40.741 0.00 0.00 0.00 4.01
2479 4746 7.348537 AGGTTAGACTAGGAAATATTCTGGCTT 59.651 37.037 0.00 0.00 0.00 4.35
2480 4747 6.847036 AGGTTAGACTAGGAAATATTCTGGCT 59.153 38.462 0.00 0.00 0.00 4.75
2481 4748 7.068686 AGGTTAGACTAGGAAATATTCTGGC 57.931 40.000 0.00 0.00 0.00 4.85
2488 4755 9.725206 AGGAAACATAGGTTAGACTAGGAAATA 57.275 33.333 0.00 0.00 35.82 1.40
2489 4756 8.625467 AGGAAACATAGGTTAGACTAGGAAAT 57.375 34.615 0.00 0.00 35.82 2.17
2490 4757 9.551339 TTAGGAAACATAGGTTAGACTAGGAAA 57.449 33.333 0.00 0.00 35.82 3.13
2491 4758 9.725206 ATTAGGAAACATAGGTTAGACTAGGAA 57.275 33.333 0.00 0.00 35.82 3.36
2500 4767 9.537192 CGTGATTGTATTAGGAAACATAGGTTA 57.463 33.333 0.00 0.00 35.82 2.85
2501 4768 8.044908 ACGTGATTGTATTAGGAAACATAGGTT 58.955 33.333 0.00 0.00 39.43 3.50
2502 4769 7.562135 ACGTGATTGTATTAGGAAACATAGGT 58.438 34.615 0.00 0.00 0.00 3.08
2503 4770 8.433421 AACGTGATTGTATTAGGAAACATAGG 57.567 34.615 0.00 0.00 0.00 2.57
2506 4773 9.095065 GAGTAACGTGATTGTATTAGGAAACAT 57.905 33.333 0.00 0.00 0.00 2.71
2507 4774 8.089597 TGAGTAACGTGATTGTATTAGGAAACA 58.910 33.333 0.00 0.00 0.00 2.83
2508 4775 8.470040 TGAGTAACGTGATTGTATTAGGAAAC 57.530 34.615 0.00 0.00 0.00 2.78
2509 4776 8.928733 GTTGAGTAACGTGATTGTATTAGGAAA 58.071 33.333 0.00 0.00 0.00 3.13
2510 4777 8.089597 TGTTGAGTAACGTGATTGTATTAGGAA 58.910 33.333 0.00 0.00 39.71 3.36
2511 4778 7.604549 TGTTGAGTAACGTGATTGTATTAGGA 58.395 34.615 0.00 0.00 39.71 2.94
2512 4779 7.821595 TGTTGAGTAACGTGATTGTATTAGG 57.178 36.000 0.00 0.00 39.71 2.69
2513 4780 8.540492 GGATGTTGAGTAACGTGATTGTATTAG 58.460 37.037 0.00 0.00 39.71 1.73
2514 4781 7.493320 GGGATGTTGAGTAACGTGATTGTATTA 59.507 37.037 0.00 0.00 39.71 0.98
2515 4782 6.315393 GGGATGTTGAGTAACGTGATTGTATT 59.685 38.462 0.00 0.00 39.71 1.89
2516 4783 5.815740 GGGATGTTGAGTAACGTGATTGTAT 59.184 40.000 0.00 0.00 39.71 2.29
2517 4784 5.046878 AGGGATGTTGAGTAACGTGATTGTA 60.047 40.000 0.00 0.00 39.71 2.41
2518 4785 4.000988 GGGATGTTGAGTAACGTGATTGT 58.999 43.478 0.00 0.00 39.71 2.71
2519 4786 4.253685 AGGGATGTTGAGTAACGTGATTG 58.746 43.478 0.00 0.00 39.71 2.67
2520 4787 4.504858 GAGGGATGTTGAGTAACGTGATT 58.495 43.478 0.00 0.00 39.71 2.57
2521 4788 3.118738 GGAGGGATGTTGAGTAACGTGAT 60.119 47.826 0.00 0.00 39.71 3.06
2522 4789 2.232941 GGAGGGATGTTGAGTAACGTGA 59.767 50.000 0.00 0.00 39.71 4.35
2523 4790 2.618053 GGAGGGATGTTGAGTAACGTG 58.382 52.381 0.00 0.00 39.71 4.49
2524 4791 1.203994 CGGAGGGATGTTGAGTAACGT 59.796 52.381 0.00 0.00 39.71 3.99
2525 4792 1.922570 CGGAGGGATGTTGAGTAACG 58.077 55.000 0.00 0.00 39.71 3.18
2526 4793 1.066430 TGCGGAGGGATGTTGAGTAAC 60.066 52.381 0.00 0.00 37.32 2.50
2527 4794 1.207089 CTGCGGAGGGATGTTGAGTAA 59.793 52.381 0.00 0.00 0.00 2.24
2528 4795 0.824109 CTGCGGAGGGATGTTGAGTA 59.176 55.000 0.00 0.00 0.00 2.59
2529 4796 1.194781 ACTGCGGAGGGATGTTGAGT 61.195 55.000 9.36 0.00 0.00 3.41
2530 4797 0.460987 GACTGCGGAGGGATGTTGAG 60.461 60.000 9.36 0.00 0.00 3.02
2531 4798 1.191489 TGACTGCGGAGGGATGTTGA 61.191 55.000 9.36 0.00 0.00 3.18
2532 4799 1.021390 GTGACTGCGGAGGGATGTTG 61.021 60.000 9.36 0.00 0.00 3.33
2533 4800 1.296715 GTGACTGCGGAGGGATGTT 59.703 57.895 9.36 0.00 0.00 2.71
2534 4801 1.480212 TTGTGACTGCGGAGGGATGT 61.480 55.000 9.36 0.00 0.00 3.06
2535 4802 1.021390 GTTGTGACTGCGGAGGGATG 61.021 60.000 9.36 0.00 0.00 3.51
2536 4803 1.296715 GTTGTGACTGCGGAGGGAT 59.703 57.895 9.36 0.00 0.00 3.85
2537 4804 2.741092 GTTGTGACTGCGGAGGGA 59.259 61.111 9.36 0.00 0.00 4.20
2538 4805 2.738521 CGTTGTGACTGCGGAGGG 60.739 66.667 9.36 0.00 0.00 4.30
2543 4810 2.716828 CGCTACCGTTGTGACTGCG 61.717 63.158 0.00 0.00 36.19 5.18
2544 4811 1.372499 TCGCTACCGTTGTGACTGC 60.372 57.895 0.00 0.00 35.54 4.40
2545 4812 1.334992 CGTCGCTACCGTTGTGACTG 61.335 60.000 19.68 12.04 41.26 3.51
2546 4813 1.081641 CGTCGCTACCGTTGTGACT 60.082 57.895 19.68 0.00 41.26 3.41
2547 4814 2.713894 GCGTCGCTACCGTTGTGAC 61.714 63.158 10.68 14.36 40.38 3.67
2548 4815 2.429571 GCGTCGCTACCGTTGTGA 60.430 61.111 10.68 0.00 35.54 3.58
2549 4816 2.716828 CTGCGTCGCTACCGTTGTG 61.717 63.158 19.50 0.00 35.54 3.33
2550 4817 2.430244 CTGCGTCGCTACCGTTGT 60.430 61.111 19.50 0.00 35.54 3.32
2551 4818 2.126618 TCTGCGTCGCTACCGTTG 60.127 61.111 19.50 0.42 35.54 4.10
2552 4819 2.126580 GTCTGCGTCGCTACCGTT 60.127 61.111 19.50 0.00 35.54 4.44
2553 4820 4.456253 CGTCTGCGTCGCTACCGT 62.456 66.667 19.50 0.00 35.54 4.83
2555 4822 4.112341 ACCGTCTGCGTCGCTACC 62.112 66.667 19.50 4.72 36.15 3.18
2556 4823 2.874780 CACCGTCTGCGTCGCTAC 60.875 66.667 19.50 15.00 36.15 3.58
2557 4824 3.035576 CTCACCGTCTGCGTCGCTA 62.036 63.158 19.50 3.59 36.15 4.26
2558 4825 4.406173 CTCACCGTCTGCGTCGCT 62.406 66.667 19.50 0.00 36.15 4.93
2559 4826 4.400109 TCTCACCGTCTGCGTCGC 62.400 66.667 11.10 11.10 36.15 5.19
2560 4827 2.502080 GTCTCACCGTCTGCGTCG 60.502 66.667 0.00 0.00 36.15 5.12
2561 4828 2.955402 AGTCTCACCGTCTGCGTC 59.045 61.111 0.00 0.00 36.15 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.