Multiple sequence alignment - TraesCS1A01G299900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G299900 chr1A 100.000 4028 0 0 1 4028 494720483 494716456 0.000000e+00 7439
1 TraesCS1A01G299900 chr1D 91.599 4083 233 44 1 4026 397181653 397177624 0.000000e+00 5539
2 TraesCS1A01G299900 chr1B 94.374 3324 111 14 764 4028 532405388 532402082 0.000000e+00 5033
3 TraesCS1A01G299900 chr7D 85.516 649 88 4 5 652 91749065 91748422 0.000000e+00 673
4 TraesCS1A01G299900 chr7D 84.954 658 91 7 5 661 168292870 168293520 0.000000e+00 660
5 TraesCS1A01G299900 chr7D 91.209 273 17 3 3756 4028 637025458 637025193 8.230000e-97 364
6 TraesCS1A01G299900 chr7B 85.000 660 94 4 5 660 28489750 28489092 0.000000e+00 665
7 TraesCS1A01G299900 chr3D 85.145 653 94 3 3 654 29494029 29493379 0.000000e+00 665
8 TraesCS1A01G299900 chr3D 92.086 278 12 6 3752 4028 500873619 500873887 2.270000e-102 383
9 TraesCS1A01G299900 chrUn 85.381 643 91 3 13 654 223002366 223001726 0.000000e+00 664
10 TraesCS1A01G299900 chrUn 85.054 649 95 2 13 660 92406768 92407415 0.000000e+00 660
11 TraesCS1A01G299900 chrUn 79.918 244 40 7 1113 1356 213327155 213327389 1.920000e-38 171
12 TraesCS1A01G299900 chr2B 84.871 661 96 4 5 661 690213026 690213686 0.000000e+00 664
13 TraesCS1A01G299900 chr6A 84.697 660 98 3 6 662 511537778 511538437 0.000000e+00 656
14 TraesCS1A01G299900 chr3A 84.545 660 100 2 5 662 584027976 584028635 0.000000e+00 652
15 TraesCS1A01G299900 chr3A 79.415 821 139 19 993 1795 707384165 707384973 1.640000e-153 553
16 TraesCS1A01G299900 chr5B 91.756 279 11 9 3752 4028 155250402 155250134 1.060000e-100 377
17 TraesCS1A01G299900 chr2D 91.697 277 16 3 3752 4028 473951768 473952037 1.060000e-100 377
18 TraesCS1A01G299900 chr2D 90.253 277 20 3 3752 4028 66186504 66186235 4.950000e-94 355
19 TraesCS1A01G299900 chr4D 90.614 277 19 3 3752 4028 484990157 484989888 1.060000e-95 361
20 TraesCS1A01G299900 chr7A 89.011 273 24 2 3756 4028 98519952 98519686 2.320000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G299900 chr1A 494716456 494720483 4027 True 7439 7439 100.000 1 4028 1 chr1A.!!$R1 4027
1 TraesCS1A01G299900 chr1D 397177624 397181653 4029 True 5539 5539 91.599 1 4026 1 chr1D.!!$R1 4025
2 TraesCS1A01G299900 chr1B 532402082 532405388 3306 True 5033 5033 94.374 764 4028 1 chr1B.!!$R1 3264
3 TraesCS1A01G299900 chr7D 91748422 91749065 643 True 673 673 85.516 5 652 1 chr7D.!!$R1 647
4 TraesCS1A01G299900 chr7D 168292870 168293520 650 False 660 660 84.954 5 661 1 chr7D.!!$F1 656
5 TraesCS1A01G299900 chr7B 28489092 28489750 658 True 665 665 85.000 5 660 1 chr7B.!!$R1 655
6 TraesCS1A01G299900 chr3D 29493379 29494029 650 True 665 665 85.145 3 654 1 chr3D.!!$R1 651
7 TraesCS1A01G299900 chrUn 223001726 223002366 640 True 664 664 85.381 13 654 1 chrUn.!!$R1 641
8 TraesCS1A01G299900 chrUn 92406768 92407415 647 False 660 660 85.054 13 660 1 chrUn.!!$F1 647
9 TraesCS1A01G299900 chr2B 690213026 690213686 660 False 664 664 84.871 5 661 1 chr2B.!!$F1 656
10 TraesCS1A01G299900 chr6A 511537778 511538437 659 False 656 656 84.697 6 662 1 chr6A.!!$F1 656
11 TraesCS1A01G299900 chr3A 584027976 584028635 659 False 652 652 84.545 5 662 1 chr3A.!!$F1 657
12 TraesCS1A01G299900 chr3A 707384165 707384973 808 False 553 553 79.415 993 1795 1 chr3A.!!$F2 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 686 0.388294 GGCGGCCGAGTACTCTTTAT 59.612 55.000 33.48 0.00 0.0 1.40 F
716 727 1.137872 GCTTGTCTCCGATGGATCAGT 59.862 52.381 0.00 0.00 0.0 3.41 F
1935 2020 0.251474 TACTCTACACGGTGCTGGGT 60.251 55.000 8.30 9.65 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1708 0.745128 ACGACGAGTAGGAGAGCCAG 60.745 60.0 0.00 0.0 36.29 4.85 R
2706 2791 0.035458 CAACTGCGGTTCCCTTCTCT 59.965 55.0 8.28 0.0 32.73 3.10 R
3212 3299 0.104120 TCGGTGTCATTGATAGGGCG 59.896 55.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 5.833131 ACTCTTTCACCCACACAAACATTAT 59.167 36.000 0.00 0.00 0.00 1.28
316 321 8.138928 TGGGAAGTCTTGATCGATGAATATAT 57.861 34.615 0.54 0.00 0.00 0.86
321 326 9.784531 AAGTCTTGATCGATGAATATATTTGGT 57.215 29.630 0.54 0.00 0.00 3.67
349 356 1.344393 TGATCCCCTAGATGTGCAGGT 60.344 52.381 0.00 0.00 34.42 4.00
527 535 9.463443 ACCGTTAAAAGAATGAGAGAAAATTTG 57.537 29.630 0.00 0.00 0.00 2.32
551 559 8.620116 TGTTCTCACAAAACTATGATGATCAA 57.380 30.769 0.00 0.00 0.00 2.57
569 577 6.739112 TGATCAATAGACGATGACGAAGAAT 58.261 36.000 0.00 0.00 42.66 2.40
579 587 6.670233 ACGATGACGAAGAATATAGAAGTCC 58.330 40.000 0.00 0.00 42.66 3.85
617 628 0.738975 CACCTCTCGGCGTCAAGATA 59.261 55.000 6.85 0.00 0.00 1.98
630 641 3.367395 CGTCAAGATAGCAACCAGAGACA 60.367 47.826 0.00 0.00 0.00 3.41
674 685 1.811860 GGCGGCCGAGTACTCTTTA 59.188 57.895 33.48 0.00 0.00 1.85
675 686 0.388294 GGCGGCCGAGTACTCTTTAT 59.612 55.000 33.48 0.00 0.00 1.40
676 687 1.610522 GGCGGCCGAGTACTCTTTATA 59.389 52.381 33.48 0.00 0.00 0.98
677 688 2.035066 GGCGGCCGAGTACTCTTTATAA 59.965 50.000 33.48 0.00 0.00 0.98
681 692 4.738740 CGGCCGAGTACTCTTTATAAAGTG 59.261 45.833 24.07 21.05 37.31 3.16
688 699 8.260550 CGAGTACTCTTTATAAAGTGATTTCGC 58.739 37.037 26.20 15.62 37.31 4.70
716 727 1.137872 GCTTGTCTCCGATGGATCAGT 59.862 52.381 0.00 0.00 0.00 3.41
718 729 1.403814 TGTCTCCGATGGATCAGTCC 58.596 55.000 0.00 0.00 45.31 3.85
740 751 6.894682 TCCATATTGGAGTAGCAACATAACA 58.105 36.000 0.00 0.00 42.67 2.41
741 752 6.992123 TCCATATTGGAGTAGCAACATAACAG 59.008 38.462 0.00 0.00 42.67 3.16
748 759 8.630054 TGGAGTAGCAACATAACAGTATTTTT 57.370 30.769 0.00 0.00 0.00 1.94
750 761 8.512138 GGAGTAGCAACATAACAGTATTTTTGT 58.488 33.333 0.00 0.00 0.00 2.83
751 762 9.893305 GAGTAGCAACATAACAGTATTTTTGTT 57.107 29.630 0.00 0.00 41.36 2.83
755 766 9.593134 AGCAACATAACAGTATTTTTGTTTTGA 57.407 25.926 13.00 0.00 38.76 2.69
756 767 9.848172 GCAACATAACAGTATTTTTGTTTTGAG 57.152 29.630 13.00 7.81 38.76 3.02
827 838 1.315257 CCAGAGAATGTTTGGGCCCG 61.315 60.000 19.37 0.00 0.00 6.13
887 898 2.287975 CCCCATTTCCCCTCCCCT 60.288 66.667 0.00 0.00 0.00 4.79
888 899 2.395353 CCCCATTTCCCCTCCCCTC 61.395 68.421 0.00 0.00 0.00 4.30
889 900 2.395353 CCCATTTCCCCTCCCCTCC 61.395 68.421 0.00 0.00 0.00 4.30
890 901 2.395353 CCATTTCCCCTCCCCTCCC 61.395 68.421 0.00 0.00 0.00 4.30
1242 1306 4.475135 GTGCGCTTCCTCCTCCCC 62.475 72.222 9.73 0.00 0.00 4.81
1542 1618 1.908483 GGGCTCCATCTTCTCCGTT 59.092 57.895 0.00 0.00 0.00 4.44
1701 1777 3.507009 GACGTCGACCTCTCCGGG 61.507 72.222 10.58 0.00 36.97 5.73
1864 1943 4.003788 CCAAGGACCAGGCGTCGT 62.004 66.667 0.00 0.00 42.99 4.34
1865 1944 2.432628 CAAGGACCAGGCGTCGTC 60.433 66.667 0.00 0.00 42.99 4.20
1866 1945 4.052229 AAGGACCAGGCGTCGTCG 62.052 66.667 0.00 0.00 42.99 5.12
1918 2003 1.631898 ACCACCACCACCATAACCTAC 59.368 52.381 0.00 0.00 0.00 3.18
1935 2020 0.251474 TACTCTACACGGTGCTGGGT 60.251 55.000 8.30 9.65 0.00 4.51
1966 2051 2.639286 GCGTGGTCTTGCTGGTTG 59.361 61.111 0.00 0.00 0.00 3.77
2404 2489 1.971695 CCTTGGGAGGCACGGTTTC 60.972 63.158 0.00 0.00 35.94 2.78
2408 2493 4.324991 GGAGGCACGGTTTCGGGT 62.325 66.667 0.00 0.00 42.74 5.28
2502 2587 3.570975 TCAAGTCATCAAATGTGCTGCTT 59.429 39.130 0.00 0.00 0.00 3.91
2760 2845 2.045242 CTCTGGGGTCGTCGGAGA 60.045 66.667 0.00 0.00 39.36 3.71
2871 2956 2.187163 GACTGTAGGAAGCGGCCC 59.813 66.667 0.00 0.00 0.00 5.80
3212 3299 4.139038 TGTTTGGAAAGGTTACTACTGGC 58.861 43.478 0.00 0.00 0.00 4.85
3215 3302 1.366679 GAAAGGTTACTACTGGCGCC 58.633 55.000 22.73 22.73 0.00 6.53
3252 3339 7.387948 CACCGACATATTAGGAATTAGGAAAGG 59.612 40.741 0.00 0.00 0.00 3.11
3293 3380 4.041075 TCTGGTGCAAATTGTAGTGAGGTA 59.959 41.667 0.00 0.00 0.00 3.08
3294 3381 4.069304 TGGTGCAAATTGTAGTGAGGTAC 58.931 43.478 0.00 0.00 0.00 3.34
3375 3490 2.894919 GCCCTGGCAAATGCGAAT 59.105 55.556 2.58 0.00 43.26 3.34
3468 3584 0.526524 TTTTGTTTTCGCAGGGCACG 60.527 50.000 0.00 0.00 0.00 5.34
3566 3684 9.366216 GTACACTGTTTGTCTATTGATACATGA 57.634 33.333 0.00 0.00 39.91 3.07
3567 3685 8.484641 ACACTGTTTGTCTATTGATACATGAG 57.515 34.615 0.00 0.00 29.79 2.90
3603 3721 5.532779 ACAATCTCTTTCCTGTTCCTGTTTC 59.467 40.000 0.00 0.00 0.00 2.78
3714 3833 1.774856 AGACAGTTTTGGCCTGTACCT 59.225 47.619 3.32 0.00 43.00 3.08
3719 3838 4.042934 ACAGTTTTGGCCTGTACCTTAGAT 59.957 41.667 3.32 0.00 41.24 1.98
3792 3912 8.009622 TGATTAATTATGGCATTGTGTGTGAT 57.990 30.769 4.78 0.00 0.00 3.06
3826 3946 6.569179 TGCCCTGTTTATTAGAAAGTGTTC 57.431 37.500 0.00 0.00 0.00 3.18
3900 4020 5.693769 TTAGCTGCATAGTACTTTCCCTT 57.306 39.130 0.00 0.00 0.00 3.95
3994 4114 4.472691 TGTTCTTCTTCAGCATTTCACG 57.527 40.909 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 7.152645 AGTCTTCGTAGTATTTCTTTGAGCAA 58.847 34.615 0.00 0.00 0.00 3.91
189 190 2.030371 TGCTCCAGTTCAATTGCAACA 58.970 42.857 0.00 0.00 0.00 3.33
245 246 5.353123 AGGCGCTTTCGAAAACTATTATTGA 59.647 36.000 12.41 0.00 38.10 2.57
316 321 1.919771 GGATCATCCCCGGACCAAA 59.080 57.895 0.73 0.00 0.00 3.28
341 348 1.565156 GCGATTTGACGACCTGCACA 61.565 55.000 0.00 0.00 35.09 4.57
349 356 6.677913 TGATGAAGATATAGCGATTTGACGA 58.322 36.000 0.00 0.00 35.09 4.20
398 405 5.362556 TTTGCTAGTCTGATTCTTTGTGC 57.637 39.130 0.00 0.00 0.00 4.57
477 485 8.470805 GGTGTCATGAGATTAGAGAGTTTTCTA 58.529 37.037 0.00 0.00 32.53 2.10
499 507 7.562454 TTTTCTCTCATTCTTTTAACGGTGT 57.438 32.000 0.00 0.00 0.00 4.16
551 559 9.221933 ACTTCTATATTCTTCGTCATCGTCTAT 57.778 33.333 0.00 0.00 38.33 1.98
569 577 9.322769 GGACCTTGGATATTTAGGACTTCTATA 57.677 37.037 0.00 0.00 33.21 1.31
606 617 1.009829 CTGGTTGCTATCTTGACGCC 58.990 55.000 0.00 0.00 0.00 5.68
617 628 0.768221 TCCCCTTGTCTCTGGTTGCT 60.768 55.000 0.00 0.00 0.00 3.91
630 641 5.721480 CCATCTGAAAAATTTAGGTCCCCTT 59.279 40.000 0.00 0.00 34.61 3.95
662 673 8.260550 GCGAAATCACTTTATAAAGAGTACTCG 58.739 37.037 27.92 25.22 39.31 4.18
663 674 9.303537 AGCGAAATCACTTTATAAAGAGTACTC 57.696 33.333 27.92 15.41 39.31 2.59
667 678 9.654663 AAGTAGCGAAATCACTTTATAAAGAGT 57.345 29.630 27.92 8.01 39.31 3.24
674 685 7.145932 AGCAAAAGTAGCGAAATCACTTTAT 57.854 32.000 0.00 0.00 40.63 1.40
675 686 6.554334 AGCAAAAGTAGCGAAATCACTTTA 57.446 33.333 0.00 0.00 40.63 1.85
676 687 5.438761 AGCAAAAGTAGCGAAATCACTTT 57.561 34.783 0.00 0.00 42.70 2.66
677 688 5.215160 CAAGCAAAAGTAGCGAAATCACTT 58.785 37.500 0.00 0.00 37.01 3.16
681 692 5.035784 AGACAAGCAAAAGTAGCGAAATC 57.964 39.130 0.00 0.00 37.01 2.17
688 699 3.372206 CCATCGGAGACAAGCAAAAGTAG 59.628 47.826 0.00 0.00 42.51 2.57
716 727 6.894682 TGTTATGTTGCTACTCCAATATGGA 58.105 36.000 0.00 0.00 45.98 3.41
718 729 7.792374 ACTGTTATGTTGCTACTCCAATATG 57.208 36.000 0.00 0.00 30.64 1.78
721 732 8.807948 AAATACTGTTATGTTGCTACTCCAAT 57.192 30.769 0.00 0.00 0.00 3.16
724 735 8.512138 ACAAAAATACTGTTATGTTGCTACTCC 58.488 33.333 0.00 0.00 0.00 3.85
725 736 9.893305 AACAAAAATACTGTTATGTTGCTACTC 57.107 29.630 0.00 0.00 35.26 2.59
729 740 9.593134 TCAAAACAAAAATACTGTTATGTTGCT 57.407 25.926 0.00 0.00 35.98 3.91
730 741 9.848172 CTCAAAACAAAAATACTGTTATGTTGC 57.152 29.630 0.00 0.00 35.98 4.17
737 748 8.655970 GCTTTGTCTCAAAACAAAAATACTGTT 58.344 29.630 4.04 0.00 45.67 3.16
738 749 7.816995 TGCTTTGTCTCAAAACAAAAATACTGT 59.183 29.630 4.04 0.00 45.67 3.55
740 751 8.655970 GTTGCTTTGTCTCAAAACAAAAATACT 58.344 29.630 10.98 0.00 45.67 2.12
741 752 8.439286 TGTTGCTTTGTCTCAAAACAAAAATAC 58.561 29.630 10.98 3.07 45.67 1.89
745 756 8.439286 GTTATGTTGCTTTGTCTCAAAACAAAA 58.561 29.630 10.98 7.74 45.67 2.44
748 759 6.625362 TGTTATGTTGCTTTGTCTCAAAACA 58.375 32.000 0.00 0.00 32.60 2.83
750 761 6.862209 ACTGTTATGTTGCTTTGTCTCAAAA 58.138 32.000 0.00 0.00 0.00 2.44
751 762 6.449635 ACTGTTATGTTGCTTTGTCTCAAA 57.550 33.333 0.00 0.00 0.00 2.69
753 764 5.700832 CCTACTGTTATGTTGCTTTGTCTCA 59.299 40.000 0.00 0.00 0.00 3.27
754 765 5.390991 GCCTACTGTTATGTTGCTTTGTCTC 60.391 44.000 0.00 0.00 0.00 3.36
755 766 4.455877 GCCTACTGTTATGTTGCTTTGTCT 59.544 41.667 0.00 0.00 0.00 3.41
756 767 4.215399 TGCCTACTGTTATGTTGCTTTGTC 59.785 41.667 0.00 0.00 0.00 3.18
757 768 4.141287 TGCCTACTGTTATGTTGCTTTGT 58.859 39.130 0.00 0.00 0.00 2.83
758 769 4.764679 TGCCTACTGTTATGTTGCTTTG 57.235 40.909 0.00 0.00 0.00 2.77
759 770 4.094887 CGATGCCTACTGTTATGTTGCTTT 59.905 41.667 0.00 0.00 0.00 3.51
760 771 3.623060 CGATGCCTACTGTTATGTTGCTT 59.377 43.478 0.00 0.00 0.00 3.91
761 772 3.198068 CGATGCCTACTGTTATGTTGCT 58.802 45.455 0.00 0.00 0.00 3.91
762 773 2.286418 GCGATGCCTACTGTTATGTTGC 60.286 50.000 0.00 0.00 0.00 4.17
827 838 0.109723 TGTGGGACCAAGGCACTAAC 59.890 55.000 0.00 0.00 38.49 2.34
887 898 3.680920 GAGAAGCGGAGGGGAGGGA 62.681 68.421 0.00 0.00 0.00 4.20
888 899 3.157949 GAGAAGCGGAGGGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
889 900 3.157949 GGAGAAGCGGAGGGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
890 901 3.157949 GGGAGAAGCGGAGGGGAG 61.158 72.222 0.00 0.00 0.00 4.30
1632 1708 0.745128 ACGACGAGTAGGAGAGCCAG 60.745 60.000 0.00 0.00 36.29 4.85
1701 1777 1.812922 CATGTGCGTGAGGAGGAGC 60.813 63.158 0.00 0.00 0.00 4.70
1761 1840 2.872001 CAGCTCTCGACGACGTGC 60.872 66.667 4.58 1.43 40.69 5.34
1864 1943 2.659016 CAGTGGGCTCTTGAGCGA 59.341 61.111 15.30 3.14 35.24 4.93
1865 1944 3.123620 GCAGTGGGCTCTTGAGCG 61.124 66.667 15.30 3.77 40.25 5.03
1866 1945 2.749441 GGCAGTGGGCTCTTGAGC 60.749 66.667 13.69 13.69 44.01 4.26
1891 1976 1.698506 TGGTGGTGGTGGTGATTTTC 58.301 50.000 0.00 0.00 0.00 2.29
1918 2003 1.079819 CACCCAGCACCGTGTAGAG 60.080 63.158 0.00 0.00 0.00 2.43
1966 2051 4.764172 AGAATAGAGCTGATGACCACAAC 58.236 43.478 0.00 0.00 0.00 3.32
2404 2489 2.518349 AACACCAAGCACCACCCG 60.518 61.111 0.00 0.00 0.00 5.28
2408 2493 0.754587 TGATGCAACACCAAGCACCA 60.755 50.000 0.00 0.00 44.49 4.17
2502 2587 2.004733 CGAGCATTGAAGTCTGCATCA 58.995 47.619 0.00 0.00 40.88 3.07
2700 2785 0.955919 CGGTTCCCTTCTCTGTTGGC 60.956 60.000 0.00 0.00 0.00 4.52
2706 2791 0.035458 CAACTGCGGTTCCCTTCTCT 59.965 55.000 8.28 0.00 32.73 3.10
2760 2845 0.607489 GGTCTGCTGCATCAACCAGT 60.607 55.000 18.54 0.00 32.93 4.00
2805 2890 2.362503 ACCCGTCGCATCTCCTCA 60.363 61.111 0.00 0.00 0.00 3.86
2817 2902 4.954970 CCCACAAGCAGCACCCGT 62.955 66.667 0.00 0.00 0.00 5.28
2871 2956 1.520787 GACCACCCTTCGCATACCG 60.521 63.158 0.00 0.00 38.61 4.02
3212 3299 0.104120 TCGGTGTCATTGATAGGGCG 59.896 55.000 0.00 0.00 0.00 6.13
3215 3302 6.813649 CCTAATATGTCGGTGTCATTGATAGG 59.186 42.308 0.00 0.00 0.00 2.57
3252 3339 6.019881 GCACCAGAAAACAACACTTTCAATAC 60.020 38.462 0.00 0.00 35.62 1.89
3293 3380 8.438676 AGCAAAGCTAATTATGAAATACGAGT 57.561 30.769 0.00 0.00 36.99 4.18
3294 3381 8.551205 TGAGCAAAGCTAATTATGAAATACGAG 58.449 33.333 0.00 0.00 39.88 4.18
3295 3382 8.432110 TGAGCAAAGCTAATTATGAAATACGA 57.568 30.769 0.00 0.00 39.88 3.43
3296 3383 8.551205 TCTGAGCAAAGCTAATTATGAAATACG 58.449 33.333 0.00 0.00 39.88 3.06
3375 3490 8.750515 ACCATATGAATATGTGACAATGACAA 57.249 30.769 3.65 0.00 38.73 3.18
3468 3584 8.954950 ATATCTATATCAACAATGCAGCTACC 57.045 34.615 0.00 0.00 0.00 3.18
3507 3623 6.072397 ACCATAAGTGTAAAATAAACGCAGCA 60.072 34.615 0.00 0.00 0.00 4.41
3576 3694 7.496346 ACAGGAACAGGAAAGAGATTGTATA 57.504 36.000 0.00 0.00 0.00 1.47
3585 3703 2.783510 AGGGAAACAGGAACAGGAAAGA 59.216 45.455 0.00 0.00 0.00 2.52
3593 3711 3.704566 ACAAAGGAAAGGGAAACAGGAAC 59.295 43.478 0.00 0.00 0.00 3.62
3603 3721 5.448654 TGGATCATCATACAAAGGAAAGGG 58.551 41.667 0.00 0.00 0.00 3.95
3675 3794 6.324254 ACTGTCTAGGGTAATCATGGACTTAC 59.676 42.308 0.00 0.00 0.00 2.34
3826 3946 2.276732 ACAACCCAGAAGTGATGGTG 57.723 50.000 0.00 0.00 35.96 4.17
3855 3975 9.774742 CTAATAGTCTTTAAGCATTGAAACACC 57.225 33.333 0.00 0.00 0.00 4.16
3900 4020 2.694628 AGCTCAAAACAACAATCAGGCA 59.305 40.909 0.00 0.00 0.00 4.75
3959 4079 7.402054 TGAAGAAGAACAATCTGGGCTAATTA 58.598 34.615 0.00 0.00 35.59 1.40
3966 4086 3.415212 TGCTGAAGAAGAACAATCTGGG 58.585 45.455 0.00 0.00 35.59 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.