Multiple sequence alignment - TraesCS1A01G298900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G298900 chr1A 100.000 6659 0 0 1 6659 493814727 493821385 0.000000e+00 12297.0
1 TraesCS1A01G298900 chr1A 96.330 109 3 1 1869 1977 28705748 28705641 1.910000e-40 178.0
2 TraesCS1A01G298900 chr1A 96.970 33 1 0 5084 5116 493819780 493819812 1.000000e-03 56.5
3 TraesCS1A01G298900 chr1A 96.970 33 1 0 5054 5086 493819810 493819842 1.000000e-03 56.5
4 TraesCS1A01G298900 chr1B 92.522 3129 132 38 2802 5865 531199958 531203049 0.000000e+00 4388.0
5 TraesCS1A01G298900 chr1B 83.616 1062 67 38 547 1551 531198523 531199534 0.000000e+00 898.0
6 TraesCS1A01G298900 chr1B 88.350 515 19 14 5867 6344 531203092 531203602 1.240000e-161 580.0
7 TraesCS1A01G298900 chr1B 96.176 340 10 2 2452 2788 531199531 531199870 2.710000e-153 553.0
8 TraesCS1A01G298900 chr1B 96.845 317 10 0 6343 6659 531203714 531204030 1.270000e-146 531.0
9 TraesCS1A01G298900 chr1B 92.593 54 0 4 5815 5867 137440258 137440208 2.580000e-09 75.0
10 TraesCS1A01G298900 chr1B 96.875 32 1 0 5054 5085 531202268 531202299 3.000000e-03 54.7
11 TraesCS1A01G298900 chr1D 96.292 1645 55 5 4230 5870 391324135 391322493 0.000000e+00 2695.0
12 TraesCS1A01G298900 chr1D 92.918 1059 63 6 3189 4245 391325259 391324211 0.000000e+00 1530.0
13 TraesCS1A01G298900 chr1D 91.889 826 32 10 5867 6659 391320271 391319448 0.000000e+00 1122.0
14 TraesCS1A01G298900 chr1D 87.473 910 56 29 984 1872 391327309 391326437 0.000000e+00 996.0
15 TraesCS1A01G298900 chr1D 95.469 618 21 3 1975 2591 391326443 391325832 0.000000e+00 979.0
16 TraesCS1A01G298900 chr1D 91.964 448 26 7 498 941 391327847 391327406 2.640000e-173 619.0
17 TraesCS1A01G298900 chr1D 88.347 369 35 6 65 430 391328222 391327859 2.850000e-118 436.0
18 TraesCS1A01G298900 chr1D 97.024 168 4 1 2622 2788 391325831 391325664 1.410000e-71 281.0
19 TraesCS1A01G298900 chr1D 83.591 323 12 16 2803 3086 391325572 391325252 1.420000e-66 265.0
20 TraesCS1A01G298900 chr1D 78.873 142 22 3 382 521 257509240 257509105 9.200000e-14 89.8
21 TraesCS1A01G298900 chr1D 95.652 46 1 1 5822 5867 42391805 42391761 9.260000e-09 73.1
22 TraesCS1A01G298900 chr3D 88.660 776 54 14 5910 6659 426443305 426442538 0.000000e+00 915.0
23 TraesCS1A01G298900 chr3D 88.235 782 52 17 5910 6659 531364803 531365576 0.000000e+00 898.0
24 TraesCS1A01G298900 chr3D 80.392 306 48 5 1 294 434166439 434166134 8.690000e-54 222.0
25 TraesCS1A01G298900 chr3D 87.037 108 14 0 2661 2768 454001478 454001371 9.070000e-24 122.0
26 TraesCS1A01G298900 chr3D 76.744 172 25 7 336 507 47175936 47176092 1.540000e-11 82.4
27 TraesCS1A01G298900 chr3B 88.280 785 49 19 5910 6659 702689572 702690348 0.000000e+00 900.0
28 TraesCS1A01G298900 chr3B 85.135 222 27 6 17 235 671353959 671354177 8.690000e-54 222.0
29 TraesCS1A01G298900 chr3A 88.439 692 44 16 5993 6659 665964246 665964926 0.000000e+00 802.0
30 TraesCS1A01G298900 chr3A 82.759 261 32 6 44 292 9048650 9048391 3.130000e-53 220.0
31 TraesCS1A01G298900 chr3A 96.429 112 3 1 1866 1977 529614829 529614939 4.100000e-42 183.0
32 TraesCS1A01G298900 chr3A 95.833 48 1 1 5818 5865 692469273 692469319 7.160000e-10 76.8
33 TraesCS1A01G298900 chrUn 96.639 357 11 1 6304 6659 480559615 480559259 5.750000e-165 592.0
34 TraesCS1A01G298900 chr7D 93.478 276 14 3 4813 5084 314650299 314650574 2.240000e-109 407.0
35 TraesCS1A01G298900 chr7D 92.903 155 10 1 3557 3710 314649839 314649993 2.420000e-54 224.0
36 TraesCS1A01G298900 chr7D 97.222 108 2 1 1869 1976 514658806 514658912 1.480000e-41 182.0
37 TraesCS1A01G298900 chr7D 92.941 85 6 0 3823 3907 314649992 314650076 2.520000e-24 124.0
38 TraesCS1A01G298900 chr4D 80.282 426 47 16 5910 6308 12420363 12419948 3.040000e-73 287.0
39 TraesCS1A01G298900 chr4D 84.588 279 31 5 28 294 337415003 337415281 3.960000e-67 267.0
40 TraesCS1A01G298900 chr4D 86.441 177 20 4 107 282 81922990 81922817 2.450000e-44 191.0
41 TraesCS1A01G298900 chr4D 97.248 109 2 1 1868 1976 261560010 261560117 4.100000e-42 183.0
42 TraesCS1A01G298900 chr4B 80.238 420 46 15 5910 6302 22753983 22753574 1.410000e-71 281.0
43 TraesCS1A01G298900 chr2A 81.893 243 43 1 1 242 17978141 17978383 3.150000e-48 204.0
44 TraesCS1A01G298900 chr6D 87.791 172 20 1 121 292 113589460 113589290 4.070000e-47 200.0
45 TraesCS1A01G298900 chr5B 83.036 224 34 4 22 242 447783322 447783100 4.070000e-47 200.0
46 TraesCS1A01G298900 chr5B 95.614 114 4 1 1866 1979 364132775 364132663 1.480000e-41 182.0
47 TraesCS1A01G298900 chr5A 98.182 110 1 1 1868 1977 82866598 82866706 2.450000e-44 191.0
48 TraesCS1A01G298900 chr5A 97.297 111 2 1 1866 1976 395300502 395300611 3.170000e-43 187.0
49 TraesCS1A01G298900 chr5A 77.333 300 55 10 1 292 591368246 591368540 1.490000e-36 165.0
50 TraesCS1A01G298900 chr5A 76.577 222 42 5 302 521 689893659 689893872 5.460000e-21 113.0
51 TraesCS1A01G298900 chr5D 96.460 113 3 1 1866 1978 282007009 282007120 1.140000e-42 185.0
52 TraesCS1A01G298900 chr5D 75.080 313 53 13 1 296 561921147 561920843 9.070000e-24 122.0
53 TraesCS1A01G298900 chr5D 94.000 50 2 1 5818 5867 434549306 434549354 2.580000e-09 75.0
54 TraesCS1A01G298900 chr4A 96.330 109 3 1 1869 1977 374688593 374688700 1.910000e-40 178.0
55 TraesCS1A01G298900 chr2D 80.090 221 34 5 302 521 2724985 2724774 8.940000e-34 156.0
56 TraesCS1A01G298900 chr2D 85.915 71 6 2 5814 5881 228434224 228434155 9.260000e-09 73.1
57 TraesCS1A01G298900 chr7A 78.166 229 36 10 301 526 299256436 299256653 4.190000e-27 134.0
58 TraesCS1A01G298900 chr7A 75.113 221 42 9 303 522 621084965 621084757 2.560000e-14 91.6
59 TraesCS1A01G298900 chr7A 89.286 56 5 1 5810 5865 12811390 12811444 1.200000e-07 69.4
60 TraesCS1A01G298900 chr6A 80.214 187 24 6 107 281 582508208 582508023 1.950000e-25 128.0
61 TraesCS1A01G298900 chr6A 88.119 101 11 1 3 102 439760017 439759917 1.170000e-22 119.0
62 TraesCS1A01G298900 chr6A 92.857 56 3 1 5824 5879 496474837 496474783 5.540000e-11 80.5
63 TraesCS1A01G298900 chr6B 79.167 192 31 3 330 521 132122261 132122079 2.520000e-24 124.0
64 TraesCS1A01G298900 chr6B 77.128 188 34 8 338 521 701087954 701088136 4.250000e-17 100.0
65 TraesCS1A01G298900 chr2B 88.136 59 7 0 461 519 215192585 215192527 3.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G298900 chr1A 493814727 493821385 6658 False 4136.666667 12297 97.980000 1 6659 3 chr1A.!!$F1 6658
1 TraesCS1A01G298900 chr1B 531198523 531204030 5507 False 1167.450000 4388 92.397333 547 6659 6 chr1B.!!$F1 6112
2 TraesCS1A01G298900 chr1D 391319448 391328222 8774 True 991.444444 2695 91.663000 65 6659 9 chr1D.!!$R3 6594
3 TraesCS1A01G298900 chr3D 426442538 426443305 767 True 915.000000 915 88.660000 5910 6659 1 chr3D.!!$R1 749
4 TraesCS1A01G298900 chr3D 531364803 531365576 773 False 898.000000 898 88.235000 5910 6659 1 chr3D.!!$F2 749
5 TraesCS1A01G298900 chr3B 702689572 702690348 776 False 900.000000 900 88.280000 5910 6659 1 chr3B.!!$F2 749
6 TraesCS1A01G298900 chr3A 665964246 665964926 680 False 802.000000 802 88.439000 5993 6659 1 chr3A.!!$F2 666
7 TraesCS1A01G298900 chr7D 314649839 314650574 735 False 251.666667 407 93.107333 3557 5084 3 chr7D.!!$F2 1527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 757 0.174162 CGGTAAGTAACCCCAGTCCG 59.826 60.0 0.0 0.0 46.62 4.79 F
1375 1457 0.040067 CGAGGCTTGTTGCTTTGTCC 60.040 55.0 0.0 0.0 42.39 4.02 F
1955 2048 0.034896 ATCCGTTTGAGGCGACAACT 59.965 50.0 0.0 0.0 0.00 3.16 F
3632 3858 0.179116 CTCCTCCTGTGACGCATCAG 60.179 60.0 0.0 0.0 34.75 2.90 F
3639 3865 0.389037 TGTGACGCATCAGTCTCAGC 60.389 55.0 0.0 0.0 38.99 4.26 F
5276 5604 0.967380 GTGCCATCTCCAACCCCAAG 60.967 60.0 0.0 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2029 0.034896 AGTTGTCGCCTCAAACGGAT 59.965 50.000 0.00 0.0 0.00 4.18 R
3372 3597 1.061546 GTGAGGTTTACACTGGGGGA 58.938 55.000 0.00 0.0 35.66 4.81 R
3815 4042 0.179936 GATCCCCTGAACTGGAGCAG 59.820 60.000 0.00 0.0 37.03 4.24 R
4906 5234 0.379669 CCATTCGATGTTGCAGGCTC 59.620 55.000 0.00 0.0 0.00 4.70 R
5395 5723 1.283613 TGGCATGTAGTAGGGTTTGGG 59.716 52.381 0.00 0.0 0.00 4.12 R
6357 9083 2.345124 AGGGAGCTGCTCATTGATTC 57.655 50.000 28.95 11.1 31.08 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.814294 CCGCCGGAGCTACACCAC 62.814 72.222 5.05 0.00 36.60 4.16
56 57 1.579698 CGATCTAACGGAGGAGACGA 58.420 55.000 0.00 0.00 34.93 4.20
57 58 1.527736 CGATCTAACGGAGGAGACGAG 59.472 57.143 0.00 0.00 34.93 4.18
58 59 1.264826 GATCTAACGGAGGAGACGAGC 59.735 57.143 0.00 0.00 34.93 5.03
59 60 0.252479 TCTAACGGAGGAGACGAGCT 59.748 55.000 0.00 0.00 34.93 4.09
60 61 1.096416 CTAACGGAGGAGACGAGCTT 58.904 55.000 0.00 0.00 34.93 3.74
61 62 1.064357 CTAACGGAGGAGACGAGCTTC 59.936 57.143 0.00 0.00 34.93 3.86
62 63 1.924320 AACGGAGGAGACGAGCTTCG 61.924 60.000 0.00 0.00 46.93 3.79
63 64 2.802106 GGAGGAGACGAGCTTCGG 59.198 66.667 9.75 0.00 45.59 4.30
78 79 1.454572 TTCGGACCGTCGGTTTGAGA 61.455 55.000 19.95 12.49 35.25 3.27
89 90 1.206831 GTTTGAGAGCGTTTCCGGC 59.793 57.895 0.00 0.00 33.68 6.13
91 92 1.227999 TTTGAGAGCGTTTCCGGCTG 61.228 55.000 0.00 0.00 41.72 4.85
113 114 3.691342 CCCTTCGCCAGTCCGACA 61.691 66.667 0.40 0.00 36.90 4.35
119 120 2.436646 GCCAGTCCGACATGGTGG 60.437 66.667 14.66 8.79 38.91 4.61
142 143 3.133365 GCCCTGGCGTCCCCATATT 62.133 63.158 0.00 0.00 44.33 1.28
204 205 0.952010 GAGCGTTTGAGGGCCGTTTA 60.952 55.000 0.00 0.00 0.00 2.01
280 282 1.375326 GGGTTTGAGAGGTTCGGCT 59.625 57.895 0.00 0.00 0.00 5.52
281 283 0.611714 GGGTTTGAGAGGTTCGGCTA 59.388 55.000 0.00 0.00 0.00 3.93
297 299 5.584253 TCGGCTATAGATGCTCTTATTCC 57.416 43.478 3.21 0.00 0.00 3.01
298 300 5.016831 TCGGCTATAGATGCTCTTATTCCA 58.983 41.667 3.21 0.00 0.00 3.53
350 352 3.375699 TCAGTAGGAGGAGATGTTTCCC 58.624 50.000 0.00 0.00 38.02 3.97
351 353 3.012959 TCAGTAGGAGGAGATGTTTCCCT 59.987 47.826 0.00 0.00 38.02 4.20
363 365 5.144100 AGATGTTTCCCTCGACTATGAGAT 58.856 41.667 0.00 0.00 38.28 2.75
374 376 2.623889 GACTATGAGATGCCTACGGTGT 59.376 50.000 0.00 0.00 0.00 4.16
375 377 2.362397 ACTATGAGATGCCTACGGTGTG 59.638 50.000 0.00 0.00 0.00 3.82
378 380 0.179108 GAGATGCCTACGGTGTGACC 60.179 60.000 0.00 0.00 34.05 4.02
390 392 5.069501 ACGGTGTGACCTAGTAAAATCTC 57.930 43.478 0.00 0.00 35.66 2.75
391 393 4.103357 CGGTGTGACCTAGTAAAATCTCG 58.897 47.826 0.00 0.00 35.66 4.04
392 394 4.430908 GGTGTGACCTAGTAAAATCTCGG 58.569 47.826 0.00 0.00 34.73 4.63
412 414 1.434622 GATGACATGCCGGCTCAGTG 61.435 60.000 29.70 21.71 0.00 3.66
413 415 3.503363 GACATGCCGGCTCAGTGC 61.503 66.667 29.70 12.68 41.94 4.40
424 426 1.739562 CTCAGTGCCTCGAAGGTGC 60.740 63.158 3.38 0.00 37.80 5.01
430 432 0.901827 TGCCTCGAAGGTGCTCATAA 59.098 50.000 3.38 0.00 37.80 1.90
431 433 1.277842 TGCCTCGAAGGTGCTCATAAA 59.722 47.619 3.38 0.00 37.80 1.40
432 434 2.092968 TGCCTCGAAGGTGCTCATAAAT 60.093 45.455 3.38 0.00 37.80 1.40
433 435 2.289002 GCCTCGAAGGTGCTCATAAATG 59.711 50.000 3.38 0.00 37.80 2.32
436 438 4.747108 CCTCGAAGGTGCTCATAAATGTAG 59.253 45.833 0.00 0.00 0.00 2.74
437 439 5.339008 TCGAAGGTGCTCATAAATGTAGT 57.661 39.130 0.00 0.00 0.00 2.73
441 443 5.165961 AGGTGCTCATAAATGTAGTGTGT 57.834 39.130 0.00 0.00 0.00 3.72
442 444 4.937620 AGGTGCTCATAAATGTAGTGTGTG 59.062 41.667 0.00 0.00 0.00 3.82
443 445 4.437390 GGTGCTCATAAATGTAGTGTGTGC 60.437 45.833 0.00 0.00 0.00 4.57
444 446 3.370672 TGCTCATAAATGTAGTGTGTGCG 59.629 43.478 0.00 0.00 33.43 5.34
445 447 3.370978 GCTCATAAATGTAGTGTGTGCGT 59.629 43.478 0.00 0.00 0.00 5.24
446 448 4.724885 GCTCATAAATGTAGTGTGTGCGTG 60.725 45.833 0.00 0.00 0.00 5.34
447 449 4.311606 TCATAAATGTAGTGTGTGCGTGT 58.688 39.130 0.00 0.00 0.00 4.49
448 450 4.151512 TCATAAATGTAGTGTGTGCGTGTG 59.848 41.667 0.00 0.00 0.00 3.82
449 451 1.948104 AATGTAGTGTGTGCGTGTGT 58.052 45.000 0.00 0.00 0.00 3.72
450 452 1.217001 ATGTAGTGTGTGCGTGTGTG 58.783 50.000 0.00 0.00 0.00 3.82
451 453 1.275657 GTAGTGTGTGCGTGTGTGC 59.724 57.895 0.00 0.00 0.00 4.57
452 454 1.153549 TAGTGTGTGCGTGTGTGCA 60.154 52.632 0.00 0.00 43.95 4.57
462 464 3.330267 TGCGTGTGTGCATTTATAGTCA 58.670 40.909 0.00 0.00 40.62 3.41
463 465 3.938334 TGCGTGTGTGCATTTATAGTCAT 59.062 39.130 0.00 0.00 40.62 3.06
464 466 5.112686 TGCGTGTGTGCATTTATAGTCATA 58.887 37.500 0.00 0.00 40.62 2.15
465 467 5.006261 TGCGTGTGTGCATTTATAGTCATAC 59.994 40.000 0.00 0.00 40.62 2.39
466 468 5.656537 CGTGTGTGCATTTATAGTCATACG 58.343 41.667 4.99 4.99 35.20 3.06
467 469 5.332280 CGTGTGTGCATTTATAGTCATACGG 60.332 44.000 9.91 0.00 37.00 4.02
468 470 5.751509 GTGTGTGCATTTATAGTCATACGGA 59.248 40.000 0.00 0.00 0.00 4.69
469 471 6.423905 GTGTGTGCATTTATAGTCATACGGAT 59.576 38.462 0.00 0.00 0.00 4.18
470 472 7.597369 GTGTGTGCATTTATAGTCATACGGATA 59.403 37.037 0.00 0.00 0.00 2.59
471 473 8.145122 TGTGTGCATTTATAGTCATACGGATAA 58.855 33.333 0.00 0.00 0.00 1.75
472 474 8.648097 GTGTGCATTTATAGTCATACGGATAAG 58.352 37.037 0.00 0.00 0.00 1.73
473 475 8.364894 TGTGCATTTATAGTCATACGGATAAGT 58.635 33.333 0.00 0.00 0.00 2.24
474 476 9.850628 GTGCATTTATAGTCATACGGATAAGTA 57.149 33.333 0.00 0.00 0.00 2.24
490 492 8.311894 CGGATAAGTATATGCGCGTATATATG 57.688 38.462 30.69 15.71 44.50 1.78
491 493 8.173130 CGGATAAGTATATGCGCGTATATATGA 58.827 37.037 30.69 21.56 44.50 2.15
492 494 9.491934 GGATAAGTATATGCGCGTATATATGAG 57.508 37.037 30.69 3.76 30.55 2.90
493 495 8.897457 ATAAGTATATGCGCGTATATATGAGC 57.103 34.615 30.69 20.96 38.31 4.26
562 565 3.549794 AGCCTTTAACCATCTGCTGATC 58.450 45.455 2.65 0.00 0.00 2.92
572 575 4.142227 ACCATCTGCTGATCAATGAAAAGC 60.142 41.667 12.02 12.02 0.00 3.51
590 593 1.078567 CTCTCAGTGCAGAAGCCCC 60.079 63.158 0.00 0.00 41.13 5.80
695 709 2.504244 CAAGACGACCGACCGAGC 60.504 66.667 3.56 0.00 0.00 5.03
738 752 1.073603 CCAAACCGGTAAGTAACCCCA 59.926 52.381 8.00 0.00 46.62 4.96
739 753 2.429478 CAAACCGGTAAGTAACCCCAG 58.571 52.381 8.00 0.00 46.62 4.45
741 755 1.269958 ACCGGTAAGTAACCCCAGTC 58.730 55.000 4.49 0.00 46.62 3.51
742 756 0.538584 CCGGTAAGTAACCCCAGTCC 59.461 60.000 0.00 0.00 46.62 3.85
743 757 0.174162 CGGTAAGTAACCCCAGTCCG 59.826 60.000 0.00 0.00 46.62 4.79
744 758 1.269958 GGTAAGTAACCCCAGTCCGT 58.730 55.000 0.00 0.00 43.16 4.69
745 759 1.205655 GGTAAGTAACCCCAGTCCGTC 59.794 57.143 0.00 0.00 43.16 4.79
749 763 2.345760 TAACCCCAGTCCGTCTCGC 61.346 63.158 0.00 0.00 0.00 5.03
962 995 0.539986 TAAAAGGAGGCGCCGAGAAT 59.460 50.000 23.20 1.65 43.43 2.40
964 997 0.179081 AAAGGAGGCGCCGAGAATAC 60.179 55.000 23.20 3.13 43.43 1.89
965 998 2.351336 AAGGAGGCGCCGAGAATACG 62.351 60.000 23.20 0.00 43.43 3.06
966 999 2.412112 GAGGCGCCGAGAATACGT 59.588 61.111 23.20 0.00 0.00 3.57
967 1000 1.657794 GAGGCGCCGAGAATACGTC 60.658 63.158 23.20 5.69 0.00 4.34
968 1001 2.103538 GGCGCCGAGAATACGTCA 59.896 61.111 12.58 0.00 0.00 4.35
969 1002 1.944676 GGCGCCGAGAATACGTCAG 60.945 63.158 12.58 0.00 0.00 3.51
971 1004 0.930742 GCGCCGAGAATACGTCAGAG 60.931 60.000 0.00 0.00 0.00 3.35
972 1005 0.317103 CGCCGAGAATACGTCAGAGG 60.317 60.000 0.00 0.00 0.00 3.69
973 1006 1.022735 GCCGAGAATACGTCAGAGGA 58.977 55.000 0.00 0.00 0.00 3.71
975 1008 1.002251 CCGAGAATACGTCAGAGGAGC 60.002 57.143 0.00 0.00 0.00 4.70
976 1009 1.944024 CGAGAATACGTCAGAGGAGCT 59.056 52.381 0.00 0.00 0.00 4.09
977 1010 2.286713 CGAGAATACGTCAGAGGAGCTG 60.287 54.545 0.00 0.00 46.31 4.24
1192 1269 0.108041 GGGCCGTCAACCTCGAAATA 60.108 55.000 0.00 0.00 0.00 1.40
1228 1305 0.100682 CCGACCGATGGTGACTACTG 59.899 60.000 0.00 0.00 35.25 2.74
1229 1306 0.525668 CGACCGATGGTGACTACTGC 60.526 60.000 0.00 0.00 35.25 4.40
1230 1307 0.818296 GACCGATGGTGACTACTGCT 59.182 55.000 0.00 0.00 35.25 4.24
1282 1359 3.164269 CCCGCCTCCTGCTATGGT 61.164 66.667 0.00 0.00 38.05 3.55
1345 1427 0.796255 TGGTGGGGGATTTGGGATTT 59.204 50.000 0.00 0.00 0.00 2.17
1371 1453 2.639286 CGCGAGGCTTGTTGCTTT 59.361 55.556 0.00 0.00 42.39 3.51
1375 1457 0.040067 CGAGGCTTGTTGCTTTGTCC 60.040 55.000 0.00 0.00 42.39 4.02
1377 1459 1.683385 GAGGCTTGTTGCTTTGTCCTT 59.317 47.619 0.00 0.00 42.39 3.36
1379 1461 1.211743 GCTTGTTGCTTTGTCCTTGC 58.788 50.000 0.00 0.00 38.95 4.01
1383 1465 1.824230 TGTTGCTTTGTCCTTGCTGTT 59.176 42.857 0.00 0.00 0.00 3.16
1389 1471 0.100325 TTGTCCTTGCTGTTGTTGCG 59.900 50.000 0.00 0.00 0.00 4.85
1392 1474 1.369209 CCTTGCTGTTGTTGCGTCG 60.369 57.895 0.00 0.00 0.00 5.12
1393 1475 2.005537 CTTGCTGTTGTTGCGTCGC 61.006 57.895 11.10 11.10 0.00 5.19
1395 1477 2.127609 GCTGTTGTTGCGTCGCTC 60.128 61.111 19.50 11.92 0.00 5.03
1397 1479 2.583868 TGTTGTTGCGTCGCTCGT 60.584 55.556 19.50 0.00 42.13 4.18
1424 1506 2.648454 CGGGGTTTTTGGCTTCGG 59.352 61.111 0.00 0.00 0.00 4.30
1459 1541 1.666209 ATCGATTGGGGCGGCTTTTG 61.666 55.000 9.56 0.00 0.00 2.44
1491 1573 8.726870 AATTGCAATCTATTTGGGAATTCTTG 57.273 30.769 13.38 0.00 35.75 3.02
1497 1583 6.006275 TCTATTTGGGAATTCTTGCTAGCT 57.994 37.500 17.23 0.00 0.00 3.32
1535 1621 4.327680 GCTTGAGTTGATTGGTAGGAAGT 58.672 43.478 0.00 0.00 0.00 3.01
1579 1669 6.113411 CCTCGGACAATTTTCTAGTGGTTAT 58.887 40.000 0.00 0.00 0.00 1.89
1580 1670 6.598064 CCTCGGACAATTTTCTAGTGGTTATT 59.402 38.462 0.00 0.00 0.00 1.40
1581 1671 7.767198 CCTCGGACAATTTTCTAGTGGTTATTA 59.233 37.037 0.00 0.00 0.00 0.98
1582 1672 8.712285 TCGGACAATTTTCTAGTGGTTATTAG 57.288 34.615 0.00 0.00 0.00 1.73
1583 1673 8.316214 TCGGACAATTTTCTAGTGGTTATTAGT 58.684 33.333 0.00 0.00 0.00 2.24
1584 1674 8.943002 CGGACAATTTTCTAGTGGTTATTAGTT 58.057 33.333 0.00 0.00 0.00 2.24
1624 1715 6.688073 ACTATAATATGGGCTGCAAGTACT 57.312 37.500 0.50 0.00 35.30 2.73
1628 1719 2.044123 ATGGGCTGCAAGTACTAAGC 57.956 50.000 13.94 13.94 35.30 3.09
1639 1730 2.079158 AGTACTAAGCAGACGCGTGTA 58.921 47.619 20.70 8.02 45.49 2.90
1640 1731 2.095532 AGTACTAAGCAGACGCGTGTAG 59.904 50.000 20.70 9.77 45.49 2.74
1641 1732 0.170561 ACTAAGCAGACGCGTGTAGG 59.829 55.000 20.70 2.05 45.49 3.18
1642 1733 0.170561 CTAAGCAGACGCGTGTAGGT 59.829 55.000 20.70 10.72 45.49 3.08
1643 1734 0.599558 TAAGCAGACGCGTGTAGGTT 59.400 50.000 20.70 20.40 45.49 3.50
1644 1735 0.599558 AAGCAGACGCGTGTAGGTTA 59.400 50.000 20.70 0.00 45.49 2.85
1645 1736 0.109412 AGCAGACGCGTGTAGGTTAC 60.109 55.000 20.70 0.00 45.49 2.50
1646 1737 0.109412 GCAGACGCGTGTAGGTTACT 60.109 55.000 20.70 0.51 0.00 2.24
1647 1738 1.668047 GCAGACGCGTGTAGGTTACTT 60.668 52.381 20.70 0.00 0.00 2.24
1648 1739 2.669364 CAGACGCGTGTAGGTTACTTT 58.331 47.619 20.70 0.00 0.00 2.66
1649 1740 3.054878 CAGACGCGTGTAGGTTACTTTT 58.945 45.455 20.70 0.00 0.00 2.27
1655 1746 4.433805 CGCGTGTAGGTTACTTTTAGCTTG 60.434 45.833 0.00 0.00 0.00 4.01
1690 1781 7.095187 CGTTTCATAGTTTCTTCAACTTAGGCT 60.095 37.037 0.00 0.00 43.89 4.58
1691 1782 7.672983 TTCATAGTTTCTTCAACTTAGGCTG 57.327 36.000 0.00 0.00 43.89 4.85
1692 1783 7.004555 TCATAGTTTCTTCAACTTAGGCTGA 57.995 36.000 0.00 0.00 43.89 4.26
1693 1784 7.099764 TCATAGTTTCTTCAACTTAGGCTGAG 58.900 38.462 4.52 4.52 43.89 3.35
1694 1785 4.068599 AGTTTCTTCAACTTAGGCTGAGC 58.931 43.478 6.16 0.00 43.89 4.26
1701 1792 3.324846 TCAACTTAGGCTGAGCTGAGAAA 59.675 43.478 3.62 0.00 0.00 2.52
1702 1793 3.326836 ACTTAGGCTGAGCTGAGAAAC 57.673 47.619 3.62 0.00 0.00 2.78
1706 1797 1.696336 AGGCTGAGCTGAGAAACTGAA 59.304 47.619 3.62 0.00 0.00 3.02
1743 1836 2.142220 TCCTTTTGGAGCGTCAGGT 58.858 52.632 0.00 0.00 45.19 4.00
1769 1862 1.116308 TCGCCAAGGATTATGACGGA 58.884 50.000 0.00 0.00 0.00 4.69
1772 1865 3.322541 TCGCCAAGGATTATGACGGAATA 59.677 43.478 0.00 0.00 0.00 1.75
1785 1878 3.244078 TGACGGAATATGCATACAGGACC 60.244 47.826 8.99 7.36 0.00 4.46
1786 1879 2.288825 ACGGAATATGCATACAGGACCG 60.289 50.000 23.87 23.87 42.78 4.79
1787 1880 2.288825 CGGAATATGCATACAGGACCGT 60.289 50.000 8.99 0.00 34.39 4.83
1788 1881 3.740115 GGAATATGCATACAGGACCGTT 58.260 45.455 8.99 0.00 0.00 4.44
1793 1886 3.897141 TGCATACAGGACCGTTCATTA 57.103 42.857 0.00 0.00 0.00 1.90
1797 1890 5.931724 TGCATACAGGACCGTTCATTATATG 59.068 40.000 0.00 0.00 0.00 1.78
1831 1924 0.386478 GTGCACAGTAGCTTGCTTGC 60.386 55.000 13.17 9.32 39.62 4.01
1853 1946 5.047590 TGCCATTCATGCCAATCAAGATATC 60.048 40.000 0.00 0.00 0.00 1.63
1854 1947 5.637809 CCATTCATGCCAATCAAGATATCG 58.362 41.667 0.00 0.00 0.00 2.92
1864 1957 7.335171 TGCCAATCAAGATATCGATTCTAATGG 59.665 37.037 1.71 12.53 29.38 3.16
1865 1958 7.335422 GCCAATCAAGATATCGATTCTAATGGT 59.665 37.037 1.71 0.00 29.38 3.55
1866 1959 9.875691 CCAATCAAGATATCGATTCTAATGGTA 57.124 33.333 1.71 0.00 29.38 3.25
1873 1966 9.398538 AGATATCGATTCTAATGGTAGTACTCC 57.601 37.037 1.71 1.20 0.00 3.85
1874 1967 6.837471 ATCGATTCTAATGGTAGTACTCCC 57.163 41.667 0.00 0.00 0.00 4.30
1875 1968 5.950023 TCGATTCTAATGGTAGTACTCCCT 58.050 41.667 6.02 0.00 0.00 4.20
1876 1969 6.002704 TCGATTCTAATGGTAGTACTCCCTC 58.997 44.000 6.02 0.00 0.00 4.30
1877 1970 5.183522 CGATTCTAATGGTAGTACTCCCTCC 59.816 48.000 6.02 3.17 0.00 4.30
1878 1971 4.096190 TCTAATGGTAGTACTCCCTCCG 57.904 50.000 6.02 0.00 0.00 4.63
1879 1972 2.842645 AATGGTAGTACTCCCTCCGT 57.157 50.000 6.02 1.33 0.00 4.69
1880 1973 2.842645 ATGGTAGTACTCCCTCCGTT 57.157 50.000 6.02 0.00 0.00 4.44
1881 1974 2.134789 TGGTAGTACTCCCTCCGTTC 57.865 55.000 6.02 0.00 0.00 3.95
1882 1975 1.341383 TGGTAGTACTCCCTCCGTTCC 60.341 57.143 6.02 0.00 0.00 3.62
1883 1976 1.341383 GGTAGTACTCCCTCCGTTCCA 60.341 57.143 0.00 0.00 0.00 3.53
1884 1977 2.664015 GTAGTACTCCCTCCGTTCCAT 58.336 52.381 0.00 0.00 0.00 3.41
1885 1978 3.435601 GGTAGTACTCCCTCCGTTCCATA 60.436 52.174 0.00 0.00 0.00 2.74
1886 1979 3.614568 AGTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
1887 1980 3.924922 AGTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
1888 1981 5.070823 AGTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
1889 1982 5.078256 AGTACTCCCTCCGTTCCATATTAG 58.922 45.833 0.00 0.00 0.00 1.73
1890 1983 3.924922 ACTCCCTCCGTTCCATATTAGT 58.075 45.455 0.00 0.00 0.00 2.24
1891 1984 4.296056 ACTCCCTCCGTTCCATATTAGTT 58.704 43.478 0.00 0.00 0.00 2.24
1892 1985 4.101119 ACTCCCTCCGTTCCATATTAGTTG 59.899 45.833 0.00 0.00 0.00 3.16
1893 1986 4.035112 TCCCTCCGTTCCATATTAGTTGT 58.965 43.478 0.00 0.00 0.00 3.32
1894 1987 4.100498 TCCCTCCGTTCCATATTAGTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
1895 1988 4.101119 CCCTCCGTTCCATATTAGTTGTCT 59.899 45.833 0.00 0.00 0.00 3.41
1896 1989 5.290386 CCTCCGTTCCATATTAGTTGTCTC 58.710 45.833 0.00 0.00 0.00 3.36
1897 1990 5.069251 CCTCCGTTCCATATTAGTTGTCTCT 59.931 44.000 0.00 0.00 0.00 3.10
1898 1991 5.902681 TCCGTTCCATATTAGTTGTCTCTG 58.097 41.667 0.00 0.00 0.00 3.35
1899 1992 5.655090 TCCGTTCCATATTAGTTGTCTCTGA 59.345 40.000 0.00 0.00 0.00 3.27
1900 1993 6.153851 TCCGTTCCATATTAGTTGTCTCTGAA 59.846 38.462 0.00 0.00 0.00 3.02
1901 1994 6.816640 CCGTTCCATATTAGTTGTCTCTGAAA 59.183 38.462 0.00 0.00 0.00 2.69
1902 1995 7.495934 CCGTTCCATATTAGTTGTCTCTGAAAT 59.504 37.037 0.00 0.00 0.00 2.17
1903 1996 8.331022 CGTTCCATATTAGTTGTCTCTGAAATG 58.669 37.037 0.00 0.00 0.00 2.32
1904 1997 8.616076 GTTCCATATTAGTTGTCTCTGAAATGG 58.384 37.037 0.00 0.00 33.10 3.16
1905 1998 8.089625 TCCATATTAGTTGTCTCTGAAATGGA 57.910 34.615 0.00 0.00 37.43 3.41
1906 1999 8.717717 TCCATATTAGTTGTCTCTGAAATGGAT 58.282 33.333 0.00 0.00 35.45 3.41
1907 2000 8.781196 CCATATTAGTTGTCTCTGAAATGGATG 58.219 37.037 0.00 0.00 33.54 3.51
1908 2001 9.334947 CATATTAGTTGTCTCTGAAATGGATGT 57.665 33.333 0.00 0.00 0.00 3.06
1911 2004 8.948631 TTAGTTGTCTCTGAAATGGATGTATC 57.051 34.615 0.00 0.00 0.00 2.24
1912 2005 7.192852 AGTTGTCTCTGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
1913 2006 8.311395 AGTTGTCTCTGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
1914 2007 8.420222 AGTTGTCTCTGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
1915 2008 8.417106 GTTGTCTCTGAAATGGATGTATCTAGA 58.583 37.037 0.00 0.00 0.00 2.43
1916 2009 8.718158 TGTCTCTGAAATGGATGTATCTAGAT 57.282 34.615 10.73 10.73 0.00 1.98
1917 2010 8.583296 TGTCTCTGAAATGGATGTATCTAGATG 58.417 37.037 15.79 0.00 0.00 2.90
1918 2011 8.584157 GTCTCTGAAATGGATGTATCTAGATGT 58.416 37.037 15.79 1.25 0.00 3.06
1919 2012 9.813826 TCTCTGAAATGGATGTATCTAGATGTA 57.186 33.333 15.79 4.44 0.00 2.29
1928 2021 8.090831 TGGATGTATCTAGATGTATTTCAGTGC 58.909 37.037 15.79 0.00 0.00 4.40
1929 2022 8.310382 GGATGTATCTAGATGTATTTCAGTGCT 58.690 37.037 15.79 0.00 0.00 4.40
1932 2025 9.574516 TGTATCTAGATGTATTTCAGTGCTAGA 57.425 33.333 15.79 0.00 38.41 2.43
1936 2029 9.574516 TCTAGATGTATTTCAGTGCTAGATACA 57.425 33.333 0.00 0.00 37.53 2.29
1939 2032 8.472683 GATGTATTTCAGTGCTAGATACATCC 57.527 38.462 21.74 12.87 45.75 3.51
1940 2033 6.447162 TGTATTTCAGTGCTAGATACATCCG 58.553 40.000 0.00 0.00 30.60 4.18
1941 2034 5.537300 ATTTCAGTGCTAGATACATCCGT 57.463 39.130 0.00 0.00 0.00 4.69
1942 2035 5.339008 TTTCAGTGCTAGATACATCCGTT 57.661 39.130 0.00 0.00 0.00 4.44
1943 2036 5.339008 TTCAGTGCTAGATACATCCGTTT 57.661 39.130 0.00 0.00 0.00 3.60
1944 2037 4.682787 TCAGTGCTAGATACATCCGTTTG 58.317 43.478 0.00 0.00 0.00 2.93
1945 2038 4.401202 TCAGTGCTAGATACATCCGTTTGA 59.599 41.667 0.00 0.00 0.00 2.69
1946 2039 4.742167 CAGTGCTAGATACATCCGTTTGAG 59.258 45.833 0.00 0.00 0.00 3.02
1947 2040 4.051922 GTGCTAGATACATCCGTTTGAGG 58.948 47.826 0.00 0.00 0.00 3.86
1948 2041 3.060602 GCTAGATACATCCGTTTGAGGC 58.939 50.000 0.00 0.00 0.00 4.70
1949 2042 2.225068 AGATACATCCGTTTGAGGCG 57.775 50.000 0.00 0.00 0.00 5.52
1950 2043 1.754803 AGATACATCCGTTTGAGGCGA 59.245 47.619 0.00 0.00 0.00 5.54
1951 2044 1.859080 GATACATCCGTTTGAGGCGAC 59.141 52.381 0.00 0.00 0.00 5.19
1952 2045 0.604073 TACATCCGTTTGAGGCGACA 59.396 50.000 0.00 0.00 0.00 4.35
1953 2046 0.250124 ACATCCGTTTGAGGCGACAA 60.250 50.000 0.00 0.00 0.00 3.18
1954 2047 0.165944 CATCCGTTTGAGGCGACAAC 59.834 55.000 0.00 0.00 0.00 3.32
1955 2048 0.034896 ATCCGTTTGAGGCGACAACT 59.965 50.000 0.00 0.00 0.00 3.16
1956 2049 0.675083 TCCGTTTGAGGCGACAACTA 59.325 50.000 0.00 0.00 0.00 2.24
1957 2050 1.068895 TCCGTTTGAGGCGACAACTAA 59.931 47.619 0.00 0.00 0.00 2.24
1958 2051 2.073816 CCGTTTGAGGCGACAACTAAT 58.926 47.619 0.00 0.00 0.00 1.73
1959 2052 3.056678 TCCGTTTGAGGCGACAACTAATA 60.057 43.478 0.00 0.00 0.00 0.98
1960 2053 3.869246 CCGTTTGAGGCGACAACTAATAT 59.131 43.478 0.00 0.00 0.00 1.28
1961 2054 4.260212 CCGTTTGAGGCGACAACTAATATG 60.260 45.833 0.00 0.00 0.00 1.78
1962 2055 4.260212 CGTTTGAGGCGACAACTAATATGG 60.260 45.833 0.00 0.00 0.00 2.74
1963 2056 4.746535 TTGAGGCGACAACTAATATGGA 57.253 40.909 0.00 0.00 0.00 3.41
1964 2057 4.746535 TGAGGCGACAACTAATATGGAA 57.253 40.909 0.00 0.00 0.00 3.53
1965 2058 4.439057 TGAGGCGACAACTAATATGGAAC 58.561 43.478 0.00 0.00 0.00 3.62
1966 2059 3.454375 AGGCGACAACTAATATGGAACG 58.546 45.455 0.00 0.00 0.00 3.95
1967 2060 2.542595 GGCGACAACTAATATGGAACGG 59.457 50.000 0.00 0.00 0.00 4.44
1968 2061 3.450578 GCGACAACTAATATGGAACGGA 58.549 45.455 0.00 0.00 0.00 4.69
1969 2062 3.489785 GCGACAACTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
1970 2063 4.049186 CGACAACTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
1971 2064 4.377897 GACAACTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
1972 2065 4.035112 ACAACTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
1973 2066 4.101119 ACAACTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
1995 2088 6.349944 GGAGTAGTTCTGTGGTCGAGAAAATA 60.350 42.308 0.00 0.00 31.27 1.40
1996 2089 7.171630 AGTAGTTCTGTGGTCGAGAAAATAT 57.828 36.000 0.00 0.00 31.27 1.28
2036 2129 4.965200 AGCACTAAGAAACTTCCTGTCT 57.035 40.909 0.00 0.00 0.00 3.41
2047 2140 7.597386 AGAAACTTCCTGTCTAATTTTGATGC 58.403 34.615 0.00 0.00 0.00 3.91
2048 2141 5.904362 ACTTCCTGTCTAATTTTGATGCC 57.096 39.130 0.00 0.00 0.00 4.40
2049 2142 5.574188 ACTTCCTGTCTAATTTTGATGCCT 58.426 37.500 0.00 0.00 0.00 4.75
2050 2143 6.721318 ACTTCCTGTCTAATTTTGATGCCTA 58.279 36.000 0.00 0.00 0.00 3.93
2110 2203 1.471287 CACCACAGCTGTTCATGATGG 59.529 52.381 18.94 15.97 0.00 3.51
2237 2331 9.599866 GAGGATTCCAAATAAATAAACCTTTGG 57.400 33.333 5.29 6.57 45.79 3.28
2263 2357 9.337091 GATTATGGTGTGTTTGTGTAAATGTAC 57.663 33.333 0.00 0.00 0.00 2.90
2268 2362 7.067615 TGGTGTGTTTGTGTAAATGTACTGATT 59.932 33.333 0.00 0.00 0.00 2.57
2315 2409 3.402628 TTCGCAGAGAAGCTTTACCTT 57.597 42.857 0.00 0.00 38.43 3.50
2319 2413 2.930682 GCAGAGAAGCTTTACCTTACCG 59.069 50.000 0.00 0.00 0.00 4.02
2365 2459 5.349543 CCTTTATCAGGCAAACAAAAGATGC 59.650 40.000 0.00 0.00 35.13 3.91
2516 2610 8.966868 TCTAGATTTGTTTTTCTGGTCAGTTTT 58.033 29.630 0.00 0.00 0.00 2.43
2572 2666 6.476378 ACTTATCTGCCACTGTAAGATTGTT 58.524 36.000 5.48 0.00 37.43 2.83
2615 2711 7.643123 AGTCAAGTTATTTATCCCACCAAGAT 58.357 34.615 0.00 0.00 0.00 2.40
2630 2727 4.576463 CACCAAGATAACTTCATGGGCTAC 59.424 45.833 0.00 0.00 45.62 3.58
2747 2844 5.466393 GCTGCATGTTTTACAAGAAATGGTT 59.534 36.000 0.00 0.00 0.00 3.67
2788 2885 4.658901 GGTATACCCTCCTTTGATCCTTCA 59.341 45.833 11.17 0.00 0.00 3.02
2789 2886 5.310857 GGTATACCCTCCTTTGATCCTTCAT 59.689 44.000 11.17 0.00 0.00 2.57
2790 2887 3.941704 ACCCTCCTTTGATCCTTCATC 57.058 47.619 0.00 0.00 0.00 2.92
2791 2888 2.511637 ACCCTCCTTTGATCCTTCATCC 59.488 50.000 0.00 0.00 0.00 3.51
2793 2890 3.203934 CCCTCCTTTGATCCTTCATCCTT 59.796 47.826 0.00 0.00 0.00 3.36
2794 2891 4.459330 CCTCCTTTGATCCTTCATCCTTC 58.541 47.826 0.00 0.00 0.00 3.46
2795 2892 4.165758 CCTCCTTTGATCCTTCATCCTTCT 59.834 45.833 0.00 0.00 0.00 2.85
2796 2893 5.367937 CCTCCTTTGATCCTTCATCCTTCTA 59.632 44.000 0.00 0.00 0.00 2.10
2797 2894 6.126652 CCTCCTTTGATCCTTCATCCTTCTAA 60.127 42.308 0.00 0.00 0.00 2.10
2798 2895 6.893583 TCCTTTGATCCTTCATCCTTCTAAG 58.106 40.000 0.00 0.00 0.00 2.18
2800 2897 6.765512 CCTTTGATCCTTCATCCTTCTAAGTC 59.234 42.308 0.00 0.00 0.00 3.01
2824 2998 8.394121 GTCATTTCCAGATATTTCTCAGTGTTC 58.606 37.037 0.00 0.00 0.00 3.18
2868 3042 7.655328 TCCATTTTTGTATGCTTGTTTACTTGG 59.345 33.333 0.00 0.00 0.00 3.61
2874 3049 7.385778 TGTATGCTTGTTTACTTGGTTATCC 57.614 36.000 0.00 0.00 0.00 2.59
2949 3124 9.234827 TGAATGAATGTTATGAACTCTCATGTT 57.765 29.630 0.00 0.00 42.48 2.71
2969 3144 9.952030 TCATGTTAGACATACTTGGTAAAATCA 57.048 29.630 0.00 0.00 36.53 2.57
2970 3145 9.988350 CATGTTAGACATACTTGGTAAAATCAC 57.012 33.333 0.00 0.00 36.53 3.06
3006 3207 2.534990 CCTTTTGGCCAATCCCTGTTA 58.465 47.619 21.26 0.00 0.00 2.41
3014 3215 3.260632 GGCCAATCCCTGTTATTTTGTGT 59.739 43.478 0.00 0.00 0.00 3.72
3015 3216 4.244862 GCCAATCCCTGTTATTTTGTGTG 58.755 43.478 0.00 0.00 0.00 3.82
3017 3218 5.741673 GCCAATCCCTGTTATTTTGTGTGTT 60.742 40.000 0.00 0.00 0.00 3.32
3018 3219 6.287525 CCAATCCCTGTTATTTTGTGTGTTT 58.712 36.000 0.00 0.00 0.00 2.83
3019 3220 6.202570 CCAATCCCTGTTATTTTGTGTGTTTG 59.797 38.462 0.00 0.00 0.00 2.93
3021 3222 6.142818 TCCCTGTTATTTTGTGTGTTTGAG 57.857 37.500 0.00 0.00 0.00 3.02
3024 3225 6.183360 CCCTGTTATTTTGTGTGTTTGAGTCT 60.183 38.462 0.00 0.00 0.00 3.24
3025 3226 6.912591 CCTGTTATTTTGTGTGTTTGAGTCTC 59.087 38.462 0.00 0.00 0.00 3.36
3051 3263 4.262808 CCATCACTCTTCTTCAGGTGAACT 60.263 45.833 0.00 0.00 41.14 3.01
3093 3305 2.078849 TGGTAACAGTCATGTCTGCG 57.921 50.000 18.24 0.00 46.17 5.18
3097 3309 3.307242 GGTAACAGTCATGTCTGCGATTC 59.693 47.826 18.24 6.35 39.29 2.52
3127 3339 8.800972 CATAATGGATCATATATTTTGCGTTGC 58.199 33.333 0.00 0.00 0.00 4.17
3199 3424 8.789881 TTGTACTAATGGAAAACAATCAAACG 57.210 30.769 0.00 0.00 0.00 3.60
3200 3425 7.932335 TGTACTAATGGAAAACAATCAAACGT 58.068 30.769 0.00 0.00 0.00 3.99
3202 3427 9.537848 GTACTAATGGAAAACAATCAAACGTAG 57.462 33.333 0.00 0.00 0.00 3.51
3204 3429 8.287503 ACTAATGGAAAACAATCAAACGTAGTC 58.712 33.333 0.00 0.00 45.00 2.59
3222 3447 5.063564 CGTAGTCCTAAGTCTTTTGGAATGC 59.936 44.000 13.88 12.14 39.40 3.56
3225 3450 6.779860 AGTCCTAAGTCTTTTGGAATGCTTA 58.220 36.000 8.14 0.00 39.40 3.09
3244 3469 7.031226 TGCTTATTTTCTGAATATCCAGCAC 57.969 36.000 16.62 0.71 34.28 4.40
3328 3553 1.696063 CTGGGGGCAAATATCCACAG 58.304 55.000 0.00 0.00 46.57 3.66
3334 3559 5.075761 TGGGGGCAAATATCCACAGTATTAT 59.924 40.000 0.00 0.00 31.91 1.28
3368 3593 4.402829 TGAACTAAAGGTATGGCTGCAAA 58.597 39.130 0.50 0.00 0.00 3.68
3372 3597 6.358974 ACTAAAGGTATGGCTGCAAATTTT 57.641 33.333 0.50 0.00 0.00 1.82
3375 3600 2.501316 AGGTATGGCTGCAAATTTTCCC 59.499 45.455 0.50 0.00 0.00 3.97
3402 3628 5.945155 GTGTAAACCTCACACTTTTCAACA 58.055 37.500 0.00 0.00 42.43 3.33
3403 3629 6.027749 GTGTAAACCTCACACTTTTCAACAG 58.972 40.000 0.00 0.00 42.43 3.16
3419 3645 5.401531 TCAACAGAACCAGTCCAGTATAC 57.598 43.478 0.00 0.00 0.00 1.47
3421 3647 5.483937 TCAACAGAACCAGTCCAGTATACAT 59.516 40.000 5.50 0.00 0.00 2.29
3422 3648 6.013725 TCAACAGAACCAGTCCAGTATACATT 60.014 38.462 5.50 0.00 0.00 2.71
3423 3649 6.374417 ACAGAACCAGTCCAGTATACATTT 57.626 37.500 5.50 0.00 0.00 2.32
3424 3650 6.407202 ACAGAACCAGTCCAGTATACATTTC 58.593 40.000 5.50 0.00 0.00 2.17
3425 3651 6.213600 ACAGAACCAGTCCAGTATACATTTCT 59.786 38.462 5.50 0.00 0.00 2.52
3426 3652 6.536582 CAGAACCAGTCCAGTATACATTTCTG 59.463 42.308 5.50 8.10 32.70 3.02
3449 3675 0.323178 AGCCAAGAACATGCCCTGAG 60.323 55.000 0.00 0.00 0.00 3.35
3453 3679 2.290514 CCAAGAACATGCCCTGAGAGAA 60.291 50.000 0.00 0.00 0.00 2.87
3466 3692 6.485648 TGCCCTGAGAGAAAAGTTTAAAGTAC 59.514 38.462 0.00 0.00 0.00 2.73
3481 3707 7.656542 AGTTTAAAGTACAAGTAGTTCAGCCTC 59.343 37.037 0.00 0.00 0.00 4.70
3490 3716 4.954875 AGTAGTTCAGCCTCAGATAATGC 58.045 43.478 0.00 0.00 0.00 3.56
3491 3717 4.653341 AGTAGTTCAGCCTCAGATAATGCT 59.347 41.667 0.00 0.00 33.52 3.79
3512 3738 4.622220 GCTCACGTCTTACTATTTTGGGGA 60.622 45.833 0.00 0.00 0.00 4.81
3524 3750 3.820425 TGGGGACAAGCTACTGGG 58.180 61.111 0.00 0.00 37.44 4.45
3544 3770 8.854614 ACTGGGCTTTAATTATATCAGCTAAG 57.145 34.615 0.00 0.00 0.00 2.18
3546 3772 7.755618 TGGGCTTTAATTATATCAGCTAAGGT 58.244 34.615 0.00 0.00 0.00 3.50
3547 3773 7.665559 TGGGCTTTAATTATATCAGCTAAGGTG 59.334 37.037 0.00 0.00 0.00 4.00
3581 3807 2.838202 GAGGTCAGGAGTAATGTTCCCA 59.162 50.000 0.00 0.00 35.20 4.37
3632 3858 0.179116 CTCCTCCTGTGACGCATCAG 60.179 60.000 0.00 0.00 34.75 2.90
3639 3865 0.389037 TGTGACGCATCAGTCTCAGC 60.389 55.000 0.00 0.00 38.99 4.26
3641 3867 1.216444 GACGCATCAGTCTCAGCCA 59.784 57.895 0.00 0.00 38.09 4.75
3762 3989 2.158549 ACTCCTTGAGCTTTTCTTGCCT 60.159 45.455 0.00 0.00 32.04 4.75
3763 3990 2.228343 CTCCTTGAGCTTTTCTTGCCTG 59.772 50.000 0.00 0.00 0.00 4.85
3951 4179 2.806434 TGCATGGCTAGTTTGGTGAAT 58.194 42.857 0.00 0.00 0.00 2.57
3953 4181 3.056678 TGCATGGCTAGTTTGGTGAATTG 60.057 43.478 0.00 0.00 0.00 2.32
4057 4285 4.588106 TCAAATCAACAAAAGCTCATGGGA 59.412 37.500 0.00 1.91 0.00 4.37
4085 4313 3.438087 CAGTTCAACAGGGTAAGCTCATG 59.562 47.826 0.00 0.00 0.00 3.07
4162 4390 4.676924 CGCCTCAAGTGAATTTGAAGTTTC 59.323 41.667 0.00 0.00 36.69 2.78
4397 4716 2.028020 CGCTTCTGGTTCTCCTTTACCT 60.028 50.000 0.00 0.00 35.41 3.08
4405 4724 5.701224 TGGTTCTCCTTTACCTGTTGAAAT 58.299 37.500 0.00 0.00 35.41 2.17
4560 4887 7.329962 TGAAAATAGCTTTTGATGTGCAATCTG 59.670 33.333 0.00 0.00 34.73 2.90
4627 4954 7.678947 ATCTGTAGAAAGAACAAATCTGTGG 57.321 36.000 0.00 0.00 38.79 4.17
4632 4959 6.319141 AGAAAGAACAAATCTGTGGTAAGC 57.681 37.500 0.00 0.00 38.79 3.09
4638 4965 2.679837 CAAATCTGTGGTAAGCAGCGAT 59.320 45.455 0.00 0.00 34.21 4.58
4701 5028 1.800586 GACGATGCAACTTCTGAAGCA 59.199 47.619 17.00 10.91 41.73 3.91
4906 5234 3.000925 GTCACAATTACCGCCGAACTATG 59.999 47.826 0.00 0.00 0.00 2.23
4992 5320 6.159751 AGGGGTACACTCCATACAACAATTAT 59.840 38.462 0.13 0.00 0.00 1.28
5276 5604 0.967380 GTGCCATCTCCAACCCCAAG 60.967 60.000 0.00 0.00 0.00 3.61
5354 5682 2.096496 CCATTGTTCCAGATGCTCGAAC 59.904 50.000 0.00 0.00 37.10 3.95
5494 5822 2.093500 AGCAGATCGACAAATGTGCCTA 60.093 45.455 2.57 0.00 44.64 3.93
5565 5893 3.426426 CGCGAGTTCAAGTTAGCTACTCT 60.426 47.826 0.00 1.28 35.54 3.24
5571 5899 4.421033 TCAAGTTAGCTACTCTGTGTCG 57.579 45.455 0.00 0.00 35.54 4.35
5727 6056 1.030488 TCTCTGGTAGACCTTCCGCG 61.030 60.000 0.00 0.00 36.82 6.46
5777 6106 0.748005 GCCCTTGCCTTTCATCGCTA 60.748 55.000 0.00 0.00 0.00 4.26
5806 6135 6.017192 TGTTTCATCATTCAGACGTGTGAAAT 60.017 34.615 28.94 17.51 39.84 2.17
5810 6139 6.313658 TCATCATTCAGACGTGTGAAATTAGG 59.686 38.462 28.94 18.78 39.84 2.69
5833 6162 5.071115 GGATGTTTGCTATCTACTCCCTCTT 59.929 44.000 0.00 0.00 0.00 2.85
5836 6165 5.112686 GTTTGCTATCTACTCCCTCTTGTG 58.887 45.833 0.00 0.00 0.00 3.33
5851 6180 8.380742 TCCCTCTTGTGAAGAAATATAAGAGT 57.619 34.615 0.00 0.00 39.44 3.24
5884 8437 1.123928 CTCTTTACGGAGGGAGGCAT 58.876 55.000 0.00 0.00 0.00 4.40
6193 8798 5.585047 CCAACCTAGCACATTAAGGTAGAAC 59.415 44.000 0.00 0.00 42.86 3.01
6224 8829 6.538021 AGCACAGATGTTATTGAGAGATCAAC 59.462 38.462 0.00 0.00 31.89 3.18
6231 8836 6.166279 TGTTATTGAGAGATCAACACAGGAC 58.834 40.000 0.00 0.00 31.89 3.85
6232 8837 4.897509 ATTGAGAGATCAACACAGGACA 57.102 40.909 0.00 0.00 31.89 4.02
6302 8914 6.506500 CAAAGACTGCTCTTTTATGTCCAT 57.493 37.500 0.00 0.00 43.10 3.41
6309 8921 6.122850 TGCTCTTTTATGTCCATCAAATCG 57.877 37.500 0.00 0.00 0.00 3.34
6357 9083 7.521529 CAATCCAGTATATTAAAGGTGATGCG 58.478 38.462 0.00 0.00 0.00 4.73
6451 9177 6.279882 TGTTCCCTTGTCAAAATGATGAAAC 58.720 36.000 0.00 0.00 0.00 2.78
6483 9209 9.766277 GATGTCTCTCACAATAATTTCTTGTTC 57.234 33.333 3.96 0.00 38.97 3.18
6508 9234 7.548075 TCGACTATTTTGGAGATCACCTTAAAC 59.452 37.037 10.73 0.13 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.814294 GTGGTGTAGCTCCGGCGG 62.814 72.222 22.51 22.51 44.37 6.13
32 33 3.843117 CCTCCGTTAGATCGGCGGC 62.843 68.421 7.21 0.00 46.31 6.53
37 38 1.527736 CTCGTCTCCTCCGTTAGATCG 59.472 57.143 0.00 0.00 0.00 3.69
38 39 1.264826 GCTCGTCTCCTCCGTTAGATC 59.735 57.143 0.00 0.00 0.00 2.75
39 40 1.134037 AGCTCGTCTCCTCCGTTAGAT 60.134 52.381 0.00 0.00 0.00 1.98
40 41 0.252479 AGCTCGTCTCCTCCGTTAGA 59.748 55.000 0.00 0.00 0.00 2.10
41 42 1.064357 GAAGCTCGTCTCCTCCGTTAG 59.936 57.143 0.00 0.00 0.00 2.34
42 43 1.093159 GAAGCTCGTCTCCTCCGTTA 58.907 55.000 0.00 0.00 0.00 3.18
43 44 1.884444 GAAGCTCGTCTCCTCCGTT 59.116 57.895 0.00 0.00 0.00 4.44
44 45 2.400158 CGAAGCTCGTCTCCTCCGT 61.400 63.158 0.00 0.00 34.72 4.69
45 46 2.405594 CGAAGCTCGTCTCCTCCG 59.594 66.667 0.00 0.00 34.72 4.63
46 47 1.749638 TCCGAAGCTCGTCTCCTCC 60.750 63.158 0.00 0.00 38.40 4.30
47 48 1.430228 GTCCGAAGCTCGTCTCCTC 59.570 63.158 0.00 0.00 38.40 3.71
48 49 2.047443 GGTCCGAAGCTCGTCTCCT 61.047 63.158 0.00 0.00 38.40 3.69
49 50 2.490685 GGTCCGAAGCTCGTCTCC 59.509 66.667 0.00 0.00 38.40 3.71
50 51 2.100603 CGGTCCGAAGCTCGTCTC 59.899 66.667 4.91 0.00 38.40 3.36
51 52 2.672307 ACGGTCCGAAGCTCGTCT 60.672 61.111 20.51 0.00 38.40 4.18
52 53 2.202453 GACGGTCCGAAGCTCGTC 60.202 66.667 20.51 7.51 43.62 4.20
53 54 4.099170 CGACGGTCCGAAGCTCGT 62.099 66.667 20.51 0.00 38.40 4.18
54 55 4.831307 CCGACGGTCCGAAGCTCG 62.831 72.222 20.51 16.31 40.07 5.03
55 56 2.760387 AAACCGACGGTCCGAAGCTC 62.760 60.000 22.00 3.66 33.12 4.09
56 57 2.864471 AAACCGACGGTCCGAAGCT 61.864 57.895 22.00 0.00 33.12 3.74
57 58 2.356673 AAACCGACGGTCCGAAGC 60.357 61.111 22.00 5.88 33.12 3.86
58 59 1.007038 TCAAACCGACGGTCCGAAG 60.007 57.895 22.00 10.95 33.12 3.79
59 60 1.007038 CTCAAACCGACGGTCCGAA 60.007 57.895 22.00 5.61 33.12 4.30
60 61 1.859427 CTCTCAAACCGACGGTCCGA 61.859 60.000 22.00 17.96 33.12 4.55
61 62 1.443872 CTCTCAAACCGACGGTCCG 60.444 63.158 22.00 14.47 33.12 4.79
62 63 1.737008 GCTCTCAAACCGACGGTCC 60.737 63.158 22.00 0.00 33.12 4.46
63 64 2.087009 CGCTCTCAAACCGACGGTC 61.087 63.158 22.00 4.67 33.12 4.79
102 103 2.436646 CCACCATGTCGGACTGGC 60.437 66.667 19.81 0.00 38.63 4.85
103 104 2.268920 CCCACCATGTCGGACTGG 59.731 66.667 18.85 18.85 38.63 4.00
128 129 2.110213 GCGAATATGGGGACGCCA 59.890 61.111 14.40 14.40 0.00 5.69
133 134 1.979809 ATATGGGGCGAATATGGGGA 58.020 50.000 0.00 0.00 0.00 4.81
166 167 4.021925 GGCTGACCGGCACCTTCT 62.022 66.667 0.00 0.00 38.25 2.85
186 187 0.535553 TTAAACGGCCCTCAAACGCT 60.536 50.000 0.00 0.00 0.00 5.07
246 248 3.151710 CCGCCTCATACACCCCGA 61.152 66.667 0.00 0.00 0.00 5.14
317 319 3.766591 CCTCCTACTGAAGGCATATCGAT 59.233 47.826 2.16 2.16 46.10 3.59
320 322 4.411927 TCTCCTCCTACTGAAGGCATATC 58.588 47.826 0.00 0.00 46.10 1.63
342 344 4.502259 GCATCTCATAGTCGAGGGAAACAT 60.502 45.833 0.00 0.00 33.59 2.71
347 349 1.145945 AGGCATCTCATAGTCGAGGGA 59.854 52.381 0.00 0.00 33.59 4.20
350 352 2.160615 CCGTAGGCATCTCATAGTCGAG 59.839 54.545 0.00 0.00 46.14 4.04
351 353 2.152016 CCGTAGGCATCTCATAGTCGA 58.848 52.381 0.00 0.00 46.14 4.20
374 376 5.068723 GTCATCCCGAGATTTTACTAGGTCA 59.931 44.000 0.00 0.00 32.16 4.02
375 377 5.068723 TGTCATCCCGAGATTTTACTAGGTC 59.931 44.000 0.00 0.00 32.16 3.85
378 380 5.406780 GCATGTCATCCCGAGATTTTACTAG 59.593 44.000 0.00 0.00 0.00 2.57
390 392 4.552365 AGCCGGCATGTCATCCCG 62.552 66.667 31.54 8.32 41.60 5.14
391 393 2.592861 GAGCCGGCATGTCATCCC 60.593 66.667 31.54 1.64 0.00 3.85
392 394 1.890979 CTGAGCCGGCATGTCATCC 60.891 63.158 31.54 7.15 0.00 3.51
412 414 2.024176 TTTATGAGCACCTTCGAGGC 57.976 50.000 1.36 0.00 39.63 4.70
413 415 3.535561 ACATTTATGAGCACCTTCGAGG 58.464 45.455 0.00 0.03 42.49 4.63
417 419 5.643777 ACACACTACATTTATGAGCACCTTC 59.356 40.000 0.00 0.00 0.00 3.46
424 426 4.388773 ACACGCACACACTACATTTATGAG 59.611 41.667 0.00 0.00 0.00 2.90
430 432 1.597195 CACACACGCACACACTACATT 59.403 47.619 0.00 0.00 0.00 2.71
431 433 1.217001 CACACACGCACACACTACAT 58.783 50.000 0.00 0.00 0.00 2.29
432 434 1.425267 GCACACACGCACACACTACA 61.425 55.000 0.00 0.00 0.00 2.74
433 435 1.275657 GCACACACGCACACACTAC 59.724 57.895 0.00 0.00 0.00 2.73
436 438 0.525242 AAATGCACACACGCACACAC 60.525 50.000 0.00 0.00 46.56 3.82
437 439 1.017387 TAAATGCACACACGCACACA 58.983 45.000 0.00 0.00 46.56 3.72
442 444 4.536364 ATGACTATAAATGCACACACGC 57.464 40.909 0.00 0.00 0.00 5.34
443 445 5.332280 CCGTATGACTATAAATGCACACACG 60.332 44.000 0.00 0.00 0.00 4.49
444 446 5.751509 TCCGTATGACTATAAATGCACACAC 59.248 40.000 0.00 0.00 0.00 3.82
445 447 5.908341 TCCGTATGACTATAAATGCACACA 58.092 37.500 0.00 0.00 0.00 3.72
446 448 8.528917 TTATCCGTATGACTATAAATGCACAC 57.471 34.615 0.00 0.00 0.00 3.82
447 449 8.364894 ACTTATCCGTATGACTATAAATGCACA 58.635 33.333 0.00 0.00 0.00 4.57
448 450 8.758633 ACTTATCCGTATGACTATAAATGCAC 57.241 34.615 0.00 0.00 0.00 4.57
455 457 8.501580 GCGCATATACTTATCCGTATGACTATA 58.498 37.037 0.30 0.00 32.63 1.31
456 458 7.361127 GCGCATATACTTATCCGTATGACTAT 58.639 38.462 0.30 0.00 32.63 2.12
457 459 6.510638 CGCGCATATACTTATCCGTATGACTA 60.511 42.308 8.75 0.00 32.63 2.59
458 460 5.579718 GCGCATATACTTATCCGTATGACT 58.420 41.667 0.30 0.00 32.63 3.41
459 461 4.436847 CGCGCATATACTTATCCGTATGAC 59.563 45.833 8.75 0.00 32.63 3.06
460 462 4.095334 ACGCGCATATACTTATCCGTATGA 59.905 41.667 5.73 0.00 32.63 2.15
461 463 4.348656 ACGCGCATATACTTATCCGTATG 58.651 43.478 5.73 0.00 32.63 2.39
462 464 4.627611 ACGCGCATATACTTATCCGTAT 57.372 40.909 5.73 0.00 34.63 3.06
463 465 5.739752 ATACGCGCATATACTTATCCGTA 57.260 39.130 5.73 0.00 34.94 4.02
464 466 4.627611 ATACGCGCATATACTTATCCGT 57.372 40.909 5.73 0.00 0.00 4.69
465 467 8.173130 TCATATATACGCGCATATACTTATCCG 58.827 37.037 18.84 5.01 0.00 4.18
466 468 9.491934 CTCATATATACGCGCATATACTTATCC 57.508 37.037 18.84 0.00 0.00 2.59
467 469 9.001049 GCTCATATATACGCGCATATACTTATC 57.999 37.037 18.84 6.49 0.00 1.75
468 470 8.512138 TGCTCATATATACGCGCATATACTTAT 58.488 33.333 18.84 4.23 0.00 1.73
469 471 7.801783 GTGCTCATATATACGCGCATATACTTA 59.198 37.037 18.84 8.45 33.41 2.24
470 472 6.637254 GTGCTCATATATACGCGCATATACTT 59.363 38.462 18.84 4.29 33.41 2.24
471 473 6.017026 AGTGCTCATATATACGCGCATATACT 60.017 38.462 18.84 11.49 35.49 2.12
472 474 6.143496 AGTGCTCATATATACGCGCATATAC 58.857 40.000 18.84 9.64 35.49 1.47
473 475 6.313744 AGTGCTCATATATACGCGCATATA 57.686 37.500 18.77 18.77 35.49 0.86
474 476 5.188327 AGTGCTCATATATACGCGCATAT 57.812 39.130 15.76 15.76 35.49 1.78
475 477 4.632538 AGTGCTCATATATACGCGCATA 57.367 40.909 5.73 2.88 35.49 3.14
476 478 3.510388 AGTGCTCATATATACGCGCAT 57.490 42.857 5.73 0.00 35.49 4.73
477 479 2.986479 CAAGTGCTCATATATACGCGCA 59.014 45.455 5.73 0.00 35.49 6.09
478 480 2.222596 GCAAGTGCTCATATATACGCGC 60.223 50.000 5.73 0.00 38.21 6.86
479 481 2.026860 CGCAAGTGCTCATATATACGCG 59.973 50.000 3.53 3.53 39.32 6.01
480 482 3.624726 CGCAAGTGCTCATATATACGC 57.375 47.619 1.21 0.00 39.32 4.42
562 565 3.501062 TCTGCACTGAGAGCTTTTCATTG 59.499 43.478 3.13 12.34 0.00 2.82
572 575 1.078567 GGGGCTTCTGCACTGAGAG 60.079 63.158 0.00 0.00 43.40 3.20
590 593 4.084013 AGACCGATGAAAAGTACGCAAAAG 60.084 41.667 0.00 0.00 0.00 2.27
671 680 4.351938 CGGTCGTCTTGTGCGGGA 62.352 66.667 0.00 0.00 0.00 5.14
962 995 3.188011 CGCAGCTCCTCTGACGTA 58.812 61.111 0.00 0.00 45.72 3.57
1040 1117 1.635663 GCTTGCCTAGCTTCGCGAAA 61.636 55.000 23.54 7.31 46.77 3.46
1192 1269 2.742372 GCGTTGAGGGTGTCGCAT 60.742 61.111 0.00 0.00 46.40 4.73
1229 1306 1.655329 GGGAGGCGACGATCAGTAG 59.345 63.158 0.00 0.00 0.00 2.57
1230 1307 1.826921 GGGGAGGCGACGATCAGTA 60.827 63.158 0.00 0.00 0.00 2.74
1282 1359 2.266554 CAAGCACCAAAAGCGAAACAA 58.733 42.857 0.00 0.00 37.01 2.83
1371 1453 1.029408 ACGCAACAACAGCAAGGACA 61.029 50.000 0.00 0.00 0.00 4.02
1375 1457 2.005537 GCGACGCAACAACAGCAAG 61.006 57.895 16.42 0.00 0.00 4.01
1377 1459 2.881266 GAGCGACGCAACAACAGCA 61.881 57.895 23.70 0.00 0.00 4.41
1379 1461 2.168621 CGAGCGACGCAACAACAG 59.831 61.111 23.70 0.84 34.51 3.16
1404 1486 3.567478 GAAGCCAAAAACCCCGCCG 62.567 63.158 0.00 0.00 0.00 6.46
1442 1524 2.181525 CAAAAGCCGCCCCAATCG 59.818 61.111 0.00 0.00 0.00 3.34
1454 1536 7.910441 ATAGATTGCAATTTTGACCCAAAAG 57.090 32.000 14.33 0.63 44.72 2.27
1459 1541 5.585844 CCCAAATAGATTGCAATTTTGACCC 59.414 40.000 25.95 9.50 37.73 4.46
1491 1573 3.743396 CCACCTCGAATCAATTAGCTAGC 59.257 47.826 6.62 6.62 0.00 3.42
1497 1583 4.191544 CTCAAGCCACCTCGAATCAATTA 58.808 43.478 0.00 0.00 0.00 1.40
1594 1684 6.244654 TGCAGCCCATATTATAGTTGCATAA 58.755 36.000 11.10 0.00 35.61 1.90
1624 1715 0.599558 AACCTACACGCGTCTGCTTA 59.400 50.000 9.86 0.00 39.65 3.09
1628 1719 2.342910 AAGTAACCTACACGCGTCTG 57.657 50.000 9.86 0.66 0.00 3.51
1639 1730 2.812011 CACCGCAAGCTAAAAGTAACCT 59.188 45.455 0.00 0.00 0.00 3.50
1640 1731 2.095415 CCACCGCAAGCTAAAAGTAACC 60.095 50.000 0.00 0.00 0.00 2.85
1641 1732 2.667448 GCCACCGCAAGCTAAAAGTAAC 60.667 50.000 0.00 0.00 34.03 2.50
1642 1733 1.538075 GCCACCGCAAGCTAAAAGTAA 59.462 47.619 0.00 0.00 34.03 2.24
1643 1734 1.161843 GCCACCGCAAGCTAAAAGTA 58.838 50.000 0.00 0.00 34.03 2.24
1644 1735 0.821711 TGCCACCGCAAGCTAAAAGT 60.822 50.000 0.00 0.00 43.74 2.66
1645 1736 1.956043 TGCCACCGCAAGCTAAAAG 59.044 52.632 0.00 0.00 43.74 2.27
1646 1737 4.165926 TGCCACCGCAAGCTAAAA 57.834 50.000 0.00 0.00 43.74 1.52
1655 1746 1.296056 ACTATGAAACGTGCCACCGC 61.296 55.000 0.00 0.00 0.00 5.68
1692 1783 1.615883 TCGAGCTTCAGTTTCTCAGCT 59.384 47.619 0.00 0.00 45.48 4.24
1693 1784 1.991965 CTCGAGCTTCAGTTTCTCAGC 59.008 52.381 0.00 0.00 0.00 4.26
1694 1785 1.991965 GCTCGAGCTTCAGTTTCTCAG 59.008 52.381 29.88 0.00 38.21 3.35
1723 1814 0.955919 CCTGACGCTCCAAAAGGACC 60.956 60.000 0.00 0.00 0.00 4.46
1740 1833 0.904865 TCCTTGGCGACATCTCACCT 60.905 55.000 0.00 0.00 42.32 4.00
1741 1834 0.179000 ATCCTTGGCGACATCTCACC 59.821 55.000 0.00 0.00 42.32 4.02
1742 1835 2.029838 AATCCTTGGCGACATCTCAC 57.970 50.000 0.00 0.00 42.32 3.51
1743 1836 3.387699 TCATAATCCTTGGCGACATCTCA 59.612 43.478 0.00 0.00 42.32 3.27
1769 1862 4.415881 TGAACGGTCCTGTATGCATATT 57.584 40.909 10.16 0.00 0.00 1.28
1772 1865 3.281727 AATGAACGGTCCTGTATGCAT 57.718 42.857 3.79 3.79 0.00 3.96
1785 1878 3.402110 TGCTGGAGCCATATAATGAACG 58.598 45.455 0.00 0.00 41.18 3.95
1786 1879 5.336213 CCATTGCTGGAGCCATATAATGAAC 60.336 44.000 15.87 0.00 46.37 3.18
1787 1880 4.768448 CCATTGCTGGAGCCATATAATGAA 59.232 41.667 15.87 0.00 46.37 2.57
1788 1881 4.202599 ACCATTGCTGGAGCCATATAATGA 60.203 41.667 15.87 0.00 46.37 2.57
1793 1886 1.216175 ACACCATTGCTGGAGCCATAT 59.784 47.619 0.00 0.00 46.37 1.78
1797 1890 2.998279 GCACACCATTGCTGGAGCC 61.998 63.158 0.00 0.00 46.37 4.70
1816 1909 1.815003 GAATGGCAAGCAAGCTACTGT 59.185 47.619 0.00 0.00 34.17 3.55
1817 1910 1.814394 TGAATGGCAAGCAAGCTACTG 59.186 47.619 0.00 0.00 34.17 2.74
1831 1924 5.413523 TCGATATCTTGATTGGCATGAATGG 59.586 40.000 0.00 0.00 34.74 3.16
1853 1946 5.183522 GGAGGGAGTACTACCATTAGAATCG 59.816 48.000 26.49 0.00 35.45 3.34
1854 1947 5.183522 CGGAGGGAGTACTACCATTAGAATC 59.816 48.000 26.49 12.39 35.45 2.52
1864 1957 2.134789 TGGAACGGAGGGAGTACTAC 57.865 55.000 0.00 0.00 0.00 2.73
1865 1958 4.736611 ATATGGAACGGAGGGAGTACTA 57.263 45.455 0.00 0.00 0.00 1.82
1866 1959 3.614568 ATATGGAACGGAGGGAGTACT 57.385 47.619 0.00 0.00 0.00 2.73
1867 1960 4.831710 ACTAATATGGAACGGAGGGAGTAC 59.168 45.833 0.00 0.00 0.00 2.73
1868 1961 5.070823 ACTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
1869 1962 3.924922 ACTAATATGGAACGGAGGGAGT 58.075 45.455 0.00 0.00 0.00 3.85
1870 1963 4.101119 ACAACTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
1871 1964 4.035112 ACAACTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
1872 1965 4.101119 AGACAACTAATATGGAACGGAGGG 59.899 45.833 0.00 0.00 0.00 4.30
1873 1966 5.069251 AGAGACAACTAATATGGAACGGAGG 59.931 44.000 0.00 0.00 0.00 4.30
1874 1967 5.980116 CAGAGACAACTAATATGGAACGGAG 59.020 44.000 0.00 0.00 0.00 4.63
1875 1968 5.655090 TCAGAGACAACTAATATGGAACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1876 1969 5.902681 TCAGAGACAACTAATATGGAACGG 58.097 41.667 0.00 0.00 0.00 4.44
1877 1970 7.827819 TTTCAGAGACAACTAATATGGAACG 57.172 36.000 0.00 0.00 0.00 3.95
1878 1971 8.616076 CCATTTCAGAGACAACTAATATGGAAC 58.384 37.037 0.00 0.00 32.51 3.62
1879 1972 8.548025 TCCATTTCAGAGACAACTAATATGGAA 58.452 33.333 0.00 0.00 35.99 3.53
1880 1973 8.089625 TCCATTTCAGAGACAACTAATATGGA 57.910 34.615 0.00 0.00 36.42 3.41
1881 1974 8.781196 CATCCATTTCAGAGACAACTAATATGG 58.219 37.037 0.00 0.00 0.00 2.74
1882 1975 9.334947 ACATCCATTTCAGAGACAACTAATATG 57.665 33.333 0.00 0.00 0.00 1.78
1885 1978 9.553064 GATACATCCATTTCAGAGACAACTAAT 57.447 33.333 0.00 0.00 0.00 1.73
1886 1979 8.762645 AGATACATCCATTTCAGAGACAACTAA 58.237 33.333 0.00 0.00 0.00 2.24
1887 1980 8.311395 AGATACATCCATTTCAGAGACAACTA 57.689 34.615 0.00 0.00 0.00 2.24
1888 1981 7.192852 AGATACATCCATTTCAGAGACAACT 57.807 36.000 0.00 0.00 0.00 3.16
1889 1982 8.417106 TCTAGATACATCCATTTCAGAGACAAC 58.583 37.037 0.00 0.00 0.00 3.32
1890 1983 8.539117 TCTAGATACATCCATTTCAGAGACAA 57.461 34.615 0.00 0.00 0.00 3.18
1891 1984 8.583296 CATCTAGATACATCCATTTCAGAGACA 58.417 37.037 4.54 0.00 0.00 3.41
1892 1985 8.584157 ACATCTAGATACATCCATTTCAGAGAC 58.416 37.037 4.54 0.00 0.00 3.36
1893 1986 8.718158 ACATCTAGATACATCCATTTCAGAGA 57.282 34.615 4.54 0.00 0.00 3.10
1902 1995 8.090831 GCACTGAAATACATCTAGATACATCCA 58.909 37.037 4.54 3.59 0.00 3.41
1903 1996 8.310382 AGCACTGAAATACATCTAGATACATCC 58.690 37.037 4.54 0.00 0.00 3.51
1906 1999 9.574516 TCTAGCACTGAAATACATCTAGATACA 57.425 33.333 4.54 0.00 32.49 2.29
1910 2003 9.574516 TGTATCTAGCACTGAAATACATCTAGA 57.425 33.333 0.00 0.00 36.86 2.43
1915 2008 7.093354 CGGATGTATCTAGCACTGAAATACAT 58.907 38.462 9.54 9.54 42.96 2.29
1916 2009 6.040504 ACGGATGTATCTAGCACTGAAATACA 59.959 38.462 1.90 1.90 37.26 2.29
1917 2010 6.448006 ACGGATGTATCTAGCACTGAAATAC 58.552 40.000 0.00 0.00 0.00 1.89
1918 2011 6.650427 ACGGATGTATCTAGCACTGAAATA 57.350 37.500 0.00 0.00 0.00 1.40
1919 2012 5.537300 ACGGATGTATCTAGCACTGAAAT 57.463 39.130 0.00 0.00 0.00 2.17
1920 2013 5.339008 AACGGATGTATCTAGCACTGAAA 57.661 39.130 0.00 0.00 0.00 2.69
1921 2014 5.105513 TCAAACGGATGTATCTAGCACTGAA 60.106 40.000 0.00 0.00 0.00 3.02
1922 2015 4.401202 TCAAACGGATGTATCTAGCACTGA 59.599 41.667 0.00 0.00 0.00 3.41
1923 2016 4.682787 TCAAACGGATGTATCTAGCACTG 58.317 43.478 0.00 0.00 0.00 3.66
1924 2017 4.202161 CCTCAAACGGATGTATCTAGCACT 60.202 45.833 0.00 0.00 0.00 4.40
1925 2018 4.051922 CCTCAAACGGATGTATCTAGCAC 58.948 47.826 0.00 0.00 0.00 4.40
1926 2019 3.492656 GCCTCAAACGGATGTATCTAGCA 60.493 47.826 0.00 0.00 0.00 3.49
1927 2020 3.060602 GCCTCAAACGGATGTATCTAGC 58.939 50.000 0.00 0.00 0.00 3.42
1928 2021 3.004419 TCGCCTCAAACGGATGTATCTAG 59.996 47.826 0.00 0.00 0.00 2.43
1929 2022 2.953648 TCGCCTCAAACGGATGTATCTA 59.046 45.455 0.00 0.00 0.00 1.98
1930 2023 1.754803 TCGCCTCAAACGGATGTATCT 59.245 47.619 0.00 0.00 0.00 1.98
1931 2024 1.859080 GTCGCCTCAAACGGATGTATC 59.141 52.381 0.00 0.00 0.00 2.24
1932 2025 1.206132 TGTCGCCTCAAACGGATGTAT 59.794 47.619 0.00 0.00 0.00 2.29
1933 2026 0.604073 TGTCGCCTCAAACGGATGTA 59.396 50.000 0.00 0.00 0.00 2.29
1934 2027 0.250124 TTGTCGCCTCAAACGGATGT 60.250 50.000 0.00 0.00 0.00 3.06
1935 2028 0.165944 GTTGTCGCCTCAAACGGATG 59.834 55.000 0.00 0.00 0.00 3.51
1936 2029 0.034896 AGTTGTCGCCTCAAACGGAT 59.965 50.000 0.00 0.00 0.00 4.18
1937 2030 0.675083 TAGTTGTCGCCTCAAACGGA 59.325 50.000 0.00 0.00 0.00 4.69
1938 2031 1.504359 TTAGTTGTCGCCTCAAACGG 58.496 50.000 0.00 0.00 0.00 4.44
1939 2032 4.260212 CCATATTAGTTGTCGCCTCAAACG 60.260 45.833 0.00 0.00 0.00 3.60
1940 2033 4.873827 TCCATATTAGTTGTCGCCTCAAAC 59.126 41.667 0.00 0.00 0.00 2.93
1941 2034 5.092554 TCCATATTAGTTGTCGCCTCAAA 57.907 39.130 0.00 0.00 0.00 2.69
1942 2035 4.746535 TCCATATTAGTTGTCGCCTCAA 57.253 40.909 0.00 0.00 0.00 3.02
1943 2036 4.439057 GTTCCATATTAGTTGTCGCCTCA 58.561 43.478 0.00 0.00 0.00 3.86
1944 2037 3.489785 CGTTCCATATTAGTTGTCGCCTC 59.510 47.826 0.00 0.00 0.00 4.70
1945 2038 3.454375 CGTTCCATATTAGTTGTCGCCT 58.546 45.455 0.00 0.00 0.00 5.52
1946 2039 2.542595 CCGTTCCATATTAGTTGTCGCC 59.457 50.000 0.00 0.00 0.00 5.54
1947 2040 3.450578 TCCGTTCCATATTAGTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
1948 2041 4.049186 CCTCCGTTCCATATTAGTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
1949 2042 4.100498 TCCCTCCGTTCCATATTAGTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
1950 2043 4.035112 TCCCTCCGTTCCATATTAGTTGT 58.965 43.478 0.00 0.00 0.00 3.32
1951 2044 4.101119 ACTCCCTCCGTTCCATATTAGTTG 59.899 45.833 0.00 0.00 0.00 3.16
1952 2045 4.296056 ACTCCCTCCGTTCCATATTAGTT 58.704 43.478 0.00 0.00 0.00 2.24
1953 2046 3.924922 ACTCCCTCCGTTCCATATTAGT 58.075 45.455 0.00 0.00 0.00 2.24
1954 2047 5.078256 ACTACTCCCTCCGTTCCATATTAG 58.922 45.833 0.00 0.00 0.00 1.73
1955 2048 5.070823 ACTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
1956 2049 3.924922 ACTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
1957 2050 3.614568 ACTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
1958 2051 3.053095 AGAACTACTCCCTCCGTTCCATA 60.053 47.826 0.00 0.00 37.15 2.74
1959 2052 2.108970 GAACTACTCCCTCCGTTCCAT 58.891 52.381 0.00 0.00 31.89 3.41
1960 2053 1.076677 AGAACTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 37.15 3.53
1961 2054 1.477295 CAGAACTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 37.15 3.62
1962 2055 2.094649 CACAGAACTACTCCCTCCGTTC 60.095 54.545 0.00 0.00 36.81 3.95
1963 2056 1.893801 CACAGAACTACTCCCTCCGTT 59.106 52.381 0.00 0.00 0.00 4.44
1964 2057 1.546961 CACAGAACTACTCCCTCCGT 58.453 55.000 0.00 0.00 0.00 4.69
1965 2058 0.818296 CCACAGAACTACTCCCTCCG 59.182 60.000 0.00 0.00 0.00 4.63
1966 2059 1.826096 GACCACAGAACTACTCCCTCC 59.174 57.143 0.00 0.00 0.00 4.30
1967 2060 1.473278 CGACCACAGAACTACTCCCTC 59.527 57.143 0.00 0.00 0.00 4.30
1968 2061 1.075050 TCGACCACAGAACTACTCCCT 59.925 52.381 0.00 0.00 0.00 4.20
1969 2062 1.473278 CTCGACCACAGAACTACTCCC 59.527 57.143 0.00 0.00 0.00 4.30
1970 2063 2.434428 TCTCGACCACAGAACTACTCC 58.566 52.381 0.00 0.00 0.00 3.85
1971 2064 4.500603 TTTCTCGACCACAGAACTACTC 57.499 45.455 0.00 0.00 29.30 2.59
1972 2065 4.931661 TTTTCTCGACCACAGAACTACT 57.068 40.909 0.00 0.00 29.30 2.57
1973 2066 7.033791 TCATATTTTCTCGACCACAGAACTAC 58.966 38.462 0.00 0.00 29.30 2.73
2013 2106 6.613153 AGACAGGAAGTTTCTTAGTGCTAT 57.387 37.500 0.00 0.00 0.00 2.97
2021 2114 8.084684 GCATCAAAATTAGACAGGAAGTTTCTT 58.915 33.333 0.00 0.00 0.00 2.52
2023 2116 6.808704 GGCATCAAAATTAGACAGGAAGTTTC 59.191 38.462 0.00 0.00 0.00 2.78
2047 2140 1.832912 CCCAACAGGCTAGGCTAGG 59.167 63.158 19.78 19.31 0.00 3.02
2110 2203 7.649306 AGCACAATAGAAGTTCAAACACATTTC 59.351 33.333 5.50 0.00 0.00 2.17
2237 2331 9.337091 GTACATTTACACAAACACACCATAATC 57.663 33.333 0.00 0.00 0.00 1.75
2280 2374 9.469807 CTTCTCTGCGAATACATAAGTTAATCT 57.530 33.333 0.00 0.00 0.00 2.40
2315 2409 7.987750 TTTGCAAATATATTAGCATCCGGTA 57.012 32.000 8.05 0.00 36.80 4.02
2319 2413 9.933723 AAAGGATTTGCAAATATATTAGCATCC 57.066 29.630 24.15 16.99 36.60 3.51
2345 2439 3.119531 CCGCATCTTTTGTTTGCCTGATA 60.120 43.478 0.00 0.00 32.76 2.15
2365 2459 3.424433 CCGCTTCTTTACTGCTTTTACCG 60.424 47.826 0.00 0.00 0.00 4.02
2593 2687 9.408648 AGTTATCTTGGTGGGATAAATAACTTG 57.591 33.333 0.00 0.00 35.85 3.16
2603 2699 4.386761 CCCATGAAGTTATCTTGGTGGGAT 60.387 45.833 19.33 0.00 46.69 3.85
2615 2711 8.519526 CAACAATAAAAGTAGCCCATGAAGTTA 58.480 33.333 0.00 0.00 0.00 2.24
2657 2754 2.158769 TGTCTCCAAGAGCTGCAAAGAA 60.159 45.455 1.02 0.00 0.00 2.52
2747 2844 9.457436 GGGTATACCTTCTTCTGAACAATTTTA 57.543 33.333 21.25 0.00 35.85 1.52
2789 2886 9.838339 GAAATATCTGGAAATGACTTAGAAGGA 57.162 33.333 0.00 0.00 0.00 3.36
2790 2887 9.844257 AGAAATATCTGGAAATGACTTAGAAGG 57.156 33.333 0.00 0.00 33.59 3.46
2794 2891 9.829507 ACTGAGAAATATCTGGAAATGACTTAG 57.170 33.333 0.00 0.00 35.54 2.18
2795 2892 9.605275 CACTGAGAAATATCTGGAAATGACTTA 57.395 33.333 0.00 0.00 35.54 2.24
2796 2893 8.105829 ACACTGAGAAATATCTGGAAATGACTT 58.894 33.333 0.00 0.00 35.54 3.01
2797 2894 7.628234 ACACTGAGAAATATCTGGAAATGACT 58.372 34.615 0.00 0.00 35.54 3.41
2798 2895 7.856145 ACACTGAGAAATATCTGGAAATGAC 57.144 36.000 0.00 0.00 35.54 3.06
2800 2897 8.272545 TGAACACTGAGAAATATCTGGAAATG 57.727 34.615 0.00 0.00 35.54 2.32
2824 2998 4.517952 TGGATGTAGCCAAATTGTGTTG 57.482 40.909 0.00 0.00 34.31 3.33
2839 3013 8.367156 AGTAAACAAGCATACAAAAATGGATGT 58.633 29.630 3.20 0.00 0.00 3.06
2929 3104 9.896645 ATGTCTAACATGAGAGTTCATAACATT 57.103 29.630 0.00 0.00 42.12 2.71
2940 3115 9.653287 TTTTACCAAGTATGTCTAACATGAGAG 57.347 33.333 0.00 0.00 39.53 3.20
2969 3144 7.158697 GCCAAAAGGGTTCTTATTGTATTTGT 58.841 34.615 0.00 0.00 39.65 2.83
2970 3145 6.593770 GGCCAAAAGGGTTCTTATTGTATTTG 59.406 38.462 0.00 0.00 39.65 2.32
2977 3152 4.225042 GGATTGGCCAAAAGGGTTCTTATT 59.775 41.667 24.71 0.00 39.65 1.40
3006 3207 5.184864 TGGTTGAGACTCAAACACACAAAAT 59.815 36.000 28.17 0.00 46.02 1.82
3015 3216 4.636249 AGAGTGATGGTTGAGACTCAAAC 58.364 43.478 23.77 23.77 44.06 2.93
3017 3218 4.590647 AGAAGAGTGATGGTTGAGACTCAA 59.409 41.667 13.99 13.99 37.83 3.02
3018 3219 4.155709 AGAAGAGTGATGGTTGAGACTCA 58.844 43.478 0.00 0.00 37.83 3.41
3019 3220 4.799564 AGAAGAGTGATGGTTGAGACTC 57.200 45.455 0.00 0.00 35.97 3.36
3021 3222 4.887748 TGAAGAAGAGTGATGGTTGAGAC 58.112 43.478 0.00 0.00 0.00 3.36
3024 3225 3.648067 ACCTGAAGAAGAGTGATGGTTGA 59.352 43.478 0.00 0.00 0.00 3.18
3025 3226 3.750130 CACCTGAAGAAGAGTGATGGTTG 59.250 47.826 0.00 0.00 32.04 3.77
3087 3299 4.318332 TCCATTATGGATGAATCGCAGAC 58.682 43.478 10.29 0.00 42.67 3.51
3117 3329 1.667724 CCACAAAATGGCAACGCAAAA 59.332 42.857 0.00 0.00 43.24 2.44
3120 3332 4.746361 CCACAAAATGGCAACGCA 57.254 50.000 0.00 0.00 43.24 5.24
3145 3358 8.964476 AACAGAAGACAGAAATCAAAGTAAGA 57.036 30.769 0.00 0.00 0.00 2.10
3150 3363 9.017669 CAAAGAAACAGAAGACAGAAATCAAAG 57.982 33.333 0.00 0.00 0.00 2.77
3152 3365 8.055279 ACAAAGAAACAGAAGACAGAAATCAA 57.945 30.769 0.00 0.00 0.00 2.57
3199 3424 6.174049 AGCATTCCAAAAGACTTAGGACTAC 58.826 40.000 8.42 0.65 0.00 2.73
3200 3425 6.374417 AGCATTCCAAAAGACTTAGGACTA 57.626 37.500 8.42 0.00 0.00 2.59
3202 3427 5.966742 AAGCATTCCAAAAGACTTAGGAC 57.033 39.130 8.42 0.09 0.00 3.85
3204 3429 9.358872 GAAAATAAGCATTCCAAAAGACTTAGG 57.641 33.333 0.00 0.00 0.00 2.69
3222 3447 7.482654 TCGTGCTGGATATTCAGAAAATAAG 57.517 36.000 15.70 0.00 36.93 1.73
3225 3450 8.037382 CATATCGTGCTGGATATTCAGAAAAT 57.963 34.615 15.70 4.47 37.48 1.82
3244 3469 8.939201 ATATCTTATCCTTCACTTGCATATCG 57.061 34.615 0.00 0.00 0.00 2.92
3277 3502 1.093159 CTTCTTGCCATGAGTCCAGC 58.907 55.000 0.00 0.00 0.00 4.85
3334 3559 9.173021 CATACCTTTAGTTCAATGTATGACCAA 57.827 33.333 0.00 0.00 37.92 3.67
3368 3593 3.141272 TGAGGTTTACACTGGGGGAAAAT 59.859 43.478 0.00 0.00 0.00 1.82
3372 3597 1.061546 GTGAGGTTTACACTGGGGGA 58.938 55.000 0.00 0.00 35.66 4.81
3396 3622 4.974645 ATACTGGACTGGTTCTGTTGAA 57.025 40.909 0.00 0.00 0.00 2.69
3402 3628 6.213600 ACAGAAATGTATACTGGACTGGTTCT 59.786 38.462 17.56 8.00 36.17 3.01
3403 3629 6.313905 CACAGAAATGTATACTGGACTGGTTC 59.686 42.308 17.56 6.53 36.17 3.62
3419 3645 2.886523 TGTTCTTGGCTCCACAGAAATG 59.113 45.455 12.03 0.00 30.86 2.32
3421 3647 2.727123 TGTTCTTGGCTCCACAGAAA 57.273 45.000 12.03 4.70 30.86 2.52
3422 3648 2.507484 CATGTTCTTGGCTCCACAGAA 58.493 47.619 8.46 8.46 0.00 3.02
3423 3649 1.883638 GCATGTTCTTGGCTCCACAGA 60.884 52.381 0.00 0.00 0.00 3.41
3424 3650 0.524862 GCATGTTCTTGGCTCCACAG 59.475 55.000 0.00 0.00 0.00 3.66
3425 3651 0.895100 GGCATGTTCTTGGCTCCACA 60.895 55.000 0.00 0.00 39.00 4.17
3426 3652 1.598701 GGGCATGTTCTTGGCTCCAC 61.599 60.000 10.82 0.00 41.61 4.02
3453 3679 8.618677 GGCTGAACTACTTGTACTTTAAACTTT 58.381 33.333 0.00 0.00 0.00 2.66
3466 3692 5.236047 GCATTATCTGAGGCTGAACTACTTG 59.764 44.000 0.00 0.00 0.00 3.16
3476 3702 1.759445 ACGTGAGCATTATCTGAGGCT 59.241 47.619 0.00 0.00 39.75 4.58
3481 3707 8.581057 AAATAGTAAGACGTGAGCATTATCTG 57.419 34.615 0.00 0.00 0.00 2.90
3490 3716 4.868734 GTCCCCAAAATAGTAAGACGTGAG 59.131 45.833 0.00 0.00 0.00 3.51
3491 3717 4.283978 TGTCCCCAAAATAGTAAGACGTGA 59.716 41.667 0.00 0.00 0.00 4.35
3524 3750 9.273016 TGTCACCTTAGCTGATATAATTAAAGC 57.727 33.333 0.00 0.00 0.00 3.51
3532 3758 9.982651 GTAAAAGATGTCACCTTAGCTGATATA 57.017 33.333 0.00 0.00 0.00 0.86
3547 3773 5.046950 ACTCCTGACCTCTGTAAAAGATGTC 60.047 44.000 4.43 4.43 45.72 3.06
3581 3807 2.421739 GCATCCATAGGACGGCGT 59.578 61.111 14.65 14.65 32.98 5.68
3632 3858 2.171448 AGGTGAACCATATGGCTGAGAC 59.829 50.000 22.18 10.88 39.32 3.36
3639 3865 4.012374 GGATATGCAGGTGAACCATATGG 58.988 47.826 20.68 20.68 38.89 2.74
3641 3867 3.657239 TGGGATATGCAGGTGAACCATAT 59.343 43.478 1.62 0.00 38.89 1.78
3762 3989 4.651045 TGGAGCAATAGAACAGATAGCTCA 59.349 41.667 12.75 0.00 46.41 4.26
3763 3990 5.207110 TGGAGCAATAGAACAGATAGCTC 57.793 43.478 0.00 0.00 44.51 4.09
3815 4042 0.179936 GATCCCCTGAACTGGAGCAG 59.820 60.000 0.00 0.00 37.03 4.24
4057 4285 4.278419 GCTTACCCTGTTGAACTGACAAAT 59.722 41.667 3.64 0.00 0.00 2.32
4085 4313 2.295349 TCTTTGTACGTCTGTGGGAGAC 59.705 50.000 0.00 0.00 46.91 3.36
4162 4390 2.609002 TGTGCATGCTAGTTCTTATGCG 59.391 45.455 20.33 0.00 46.61 4.73
4189 4417 1.890876 AGAAAATGTGTGCCACGCTA 58.109 45.000 10.12 0.00 37.14 4.26
4193 4421 3.791245 TGGAAAAGAAAATGTGTGCCAC 58.209 40.909 0.00 0.00 34.56 5.01
4197 4425 6.254157 CACAGAACTGGAAAAGAAAATGTGTG 59.746 38.462 6.76 0.00 31.31 3.82
4198 4426 6.332630 CACAGAACTGGAAAAGAAAATGTGT 58.667 36.000 6.76 0.00 31.31 3.72
4199 4427 5.232838 GCACAGAACTGGAAAAGAAAATGTG 59.767 40.000 6.76 0.00 35.10 3.21
4203 4431 3.181491 CGGCACAGAACTGGAAAAGAAAA 60.181 43.478 6.76 0.00 34.19 2.29
4207 4435 1.264288 GACGGCACAGAACTGGAAAAG 59.736 52.381 6.76 0.00 34.19 2.27
4212 4440 2.163818 TTTAGACGGCACAGAACTGG 57.836 50.000 6.76 0.00 34.19 4.00
4397 4716 3.507162 TCTCTCCTTGGCATTTCAACA 57.493 42.857 0.00 0.00 0.00 3.33
4405 4724 2.968574 GGTATCTCATCTCTCCTTGGCA 59.031 50.000 0.00 0.00 0.00 4.92
4533 4855 7.544566 AGATTGCACATCAAAAGCTATTTTCAG 59.455 33.333 10.26 0.00 36.47 3.02
4560 4887 6.759497 ATTAGTTGTGGTTCAGGAATAAGC 57.241 37.500 0.00 0.00 0.00 3.09
4627 4954 0.864455 GATGCCTCATCGCTGCTTAC 59.136 55.000 0.00 0.00 31.01 2.34
4638 4965 2.224843 ACCAACACTTGATGATGCCTCA 60.225 45.455 0.00 0.00 35.41 3.86
4701 5028 2.391616 TGCTCGCAACAGAAGATGAT 57.608 45.000 0.00 0.00 0.00 2.45
4906 5234 0.379669 CCATTCGATGTTGCAGGCTC 59.620 55.000 0.00 0.00 0.00 4.70
5276 5604 2.014068 GCTGTTGCATAGGACTGGGAC 61.014 57.143 0.00 0.00 39.41 4.46
5354 5682 4.314740 TTTGGTCTTTGGTTTCCATTCG 57.685 40.909 0.00 0.00 31.53 3.34
5391 5719 1.737199 TGTAGTAGGGTTTGGGTGCT 58.263 50.000 0.00 0.00 0.00 4.40
5395 5723 1.283613 TGGCATGTAGTAGGGTTTGGG 59.716 52.381 0.00 0.00 0.00 4.12
5565 5893 4.663166 CAATGTACAAACCAAACGACACA 58.337 39.130 0.00 0.00 0.00 3.72
5571 5899 8.026607 ACATATACAGCAATGTACAAACCAAAC 58.973 33.333 0.00 0.00 34.61 2.93
5637 5966 4.415881 AAGAATACACATATGCCGACCA 57.584 40.909 1.58 0.00 0.00 4.02
5727 6056 2.826128 CCCTTACCTTTTCCTCCTTTGC 59.174 50.000 0.00 0.00 0.00 3.68
5762 6091 4.782019 ACAAATTAGCGATGAAAGGCAA 57.218 36.364 0.00 0.00 0.00 4.52
5777 6106 6.638063 CACACGTCTGAATGATGAAACAAATT 59.362 34.615 0.00 0.00 35.71 1.82
5806 6135 6.143915 AGGGAGTAGATAGCAAACATCCTAA 58.856 40.000 0.00 0.00 0.00 2.69
5810 6139 5.799827 AGAGGGAGTAGATAGCAAACATC 57.200 43.478 0.00 0.00 0.00 3.06
5851 6180 7.148120 CCTCCGTAAAGAGTAGTGATCTAAACA 60.148 40.741 0.00 0.00 31.53 2.83
5865 6194 1.123928 ATGCCTCCCTCCGTAAAGAG 58.876 55.000 0.00 0.00 0.00 2.85
6104 8708 3.685139 TCTGGACTGAGCAAAGGTAAG 57.315 47.619 0.00 0.00 0.00 2.34
6143 8748 6.271488 TCAATCAGCAGGGTAATTTGAAAG 57.729 37.500 0.00 0.00 0.00 2.62
6193 8798 6.047231 TCTCAATAACATCTGTGCTCATCAG 58.953 40.000 0.00 0.00 0.00 2.90
6224 8829 3.879295 ACTTTGTGAACTCATGTCCTGTG 59.121 43.478 0.00 0.00 0.00 3.66
6231 8836 4.214119 CCAGGTACACTTTGTGAACTCATG 59.786 45.833 4.61 0.00 36.96 3.07
6232 8837 4.389374 CCAGGTACACTTTGTGAACTCAT 58.611 43.478 4.61 0.00 36.96 2.90
6302 8914 9.340695 GTTGAAATGATTATGTTGACGATTTGA 57.659 29.630 0.00 0.00 0.00 2.69
6309 8921 6.389091 TGCTGGTTGAAATGATTATGTTGAC 58.611 36.000 0.00 0.00 0.00 3.18
6357 9083 2.345124 AGGGAGCTGCTCATTGATTC 57.655 50.000 28.95 11.10 31.08 2.52
6451 9177 7.488187 AATTATTGTGAGAGACATCAATCGG 57.512 36.000 0.00 0.00 34.62 4.18
6483 9209 7.333423 TGTTTAAGGTGATCTCCAAAATAGTCG 59.667 37.037 15.93 0.00 0.00 4.18
6508 9234 3.678921 CTTGGATTGCCATGCCATG 57.321 52.632 0.00 0.00 45.46 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.