Multiple sequence alignment - TraesCS1A01G298300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G298300 chr1A 100.000 2534 0 0 1 2534 493265820 493268353 0.000000e+00 4680.0
1 TraesCS1A01G298300 chr1D 95.689 1067 34 5 743 1808 392027085 392026030 0.000000e+00 1705.0
2 TraesCS1A01G298300 chr1D 82.301 113 6 6 618 730 392027168 392027070 4.490000e-13 86.1
3 TraesCS1A01G298300 chr1B 93.878 1078 44 10 743 1818 530610036 530611093 0.000000e+00 1605.0
4 TraesCS1A01G298300 chr3B 90.656 717 55 2 1829 2533 462865130 462864414 0.000000e+00 942.0
5 TraesCS1A01G298300 chr3B 87.633 469 58 0 2057 2525 706188223 706188691 1.710000e-151 545.0
6 TraesCS1A01G298300 chr2D 90.542 719 54 3 1829 2534 628689200 628689917 0.000000e+00 939.0
7 TraesCS1A01G298300 chr2D 90.566 689 51 3 1829 2504 628560272 628559585 0.000000e+00 900.0
8 TraesCS1A01G298300 chr3D 88.769 650 61 2 1829 2466 300710809 300710160 0.000000e+00 785.0
9 TraesCS1A01G298300 chr3D 91.429 560 41 7 1979 2534 614965550 614966106 0.000000e+00 761.0
10 TraesCS1A01G298300 chr5D 89.085 623 55 3 1829 2439 541625862 541625241 0.000000e+00 761.0
11 TraesCS1A01G298300 chr5D 89.418 567 45 6 1979 2534 553363442 553364004 0.000000e+00 701.0
12 TraesCS1A01G298300 chr5D 84.914 232 34 1 1829 2059 399931154 399931385 1.520000e-57 233.0
13 TraesCS1A01G298300 chr3A 93.125 480 32 1 2056 2534 706921942 706921463 0.000000e+00 702.0
14 TraesCS1A01G298300 chr7B 89.693 553 44 3 1995 2534 717307633 717308185 0.000000e+00 693.0
15 TraesCS1A01G298300 chr4A 88.730 488 40 2 1829 2304 530808479 530807995 1.310000e-162 582.0
16 TraesCS1A01G298300 chr6D 90.308 227 22 0 1829 2055 121066108 121065882 5.300000e-77 298.0
17 TraesCS1A01G298300 chr6A 88.987 227 22 1 1829 2055 526018571 526018794 6.900000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G298300 chr1A 493265820 493268353 2533 False 4680.00 4680 100.000 1 2534 1 chr1A.!!$F1 2533
1 TraesCS1A01G298300 chr1D 392026030 392027168 1138 True 895.55 1705 88.995 618 1808 2 chr1D.!!$R1 1190
2 TraesCS1A01G298300 chr1B 530610036 530611093 1057 False 1605.00 1605 93.878 743 1818 1 chr1B.!!$F1 1075
3 TraesCS1A01G298300 chr3B 462864414 462865130 716 True 942.00 942 90.656 1829 2533 1 chr3B.!!$R1 704
4 TraesCS1A01G298300 chr2D 628689200 628689917 717 False 939.00 939 90.542 1829 2534 1 chr2D.!!$F1 705
5 TraesCS1A01G298300 chr2D 628559585 628560272 687 True 900.00 900 90.566 1829 2504 1 chr2D.!!$R1 675
6 TraesCS1A01G298300 chr3D 300710160 300710809 649 True 785.00 785 88.769 1829 2466 1 chr3D.!!$R1 637
7 TraesCS1A01G298300 chr3D 614965550 614966106 556 False 761.00 761 91.429 1979 2534 1 chr3D.!!$F1 555
8 TraesCS1A01G298300 chr5D 541625241 541625862 621 True 761.00 761 89.085 1829 2439 1 chr5D.!!$R1 610
9 TraesCS1A01G298300 chr5D 553363442 553364004 562 False 701.00 701 89.418 1979 2534 1 chr5D.!!$F2 555
10 TraesCS1A01G298300 chr7B 717307633 717308185 552 False 693.00 693 89.693 1995 2534 1 chr7B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 596 0.325577 ATTGCCCCTCCATTCAACCC 60.326 55.0 0.0 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1572 0.032403 TCGAAAACGAAGGCGGAAGA 59.968 50.0 0.0 0.0 43.17 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.816640 AGCAAAAATACACAATGAAACCTTAG 57.183 30.769 0.00 0.00 0.00 2.18
31 32 7.872483 AGCAAAAATACACAATGAAACCTTAGG 59.128 33.333 0.00 0.00 0.00 2.69
32 33 7.655732 GCAAAAATACACAATGAAACCTTAGGT 59.344 33.333 0.00 0.00 37.65 3.08
33 34 9.191995 CAAAAATACACAATGAAACCTTAGGTC 57.808 33.333 3.62 0.00 33.12 3.85
34 35 8.706322 AAAATACACAATGAAACCTTAGGTCT 57.294 30.769 3.62 0.00 33.12 3.85
35 36 9.802039 AAAATACACAATGAAACCTTAGGTCTA 57.198 29.630 3.62 0.00 33.12 2.59
36 37 9.449719 AAATACACAATGAAACCTTAGGTCTAG 57.550 33.333 3.62 0.00 33.12 2.43
37 38 5.805728 ACACAATGAAACCTTAGGTCTAGG 58.194 41.667 3.62 0.00 33.12 3.02
38 39 4.636206 CACAATGAAACCTTAGGTCTAGGC 59.364 45.833 3.62 0.00 33.12 3.93
39 40 4.536489 ACAATGAAACCTTAGGTCTAGGCT 59.464 41.667 3.62 0.00 33.12 4.58
40 41 5.119694 CAATGAAACCTTAGGTCTAGGCTC 58.880 45.833 3.62 0.00 33.12 4.70
41 42 3.786553 TGAAACCTTAGGTCTAGGCTCA 58.213 45.455 3.62 0.00 33.12 4.26
42 43 3.514309 TGAAACCTTAGGTCTAGGCTCAC 59.486 47.826 3.62 0.00 33.12 3.51
43 44 2.162264 ACCTTAGGTCTAGGCTCACC 57.838 55.000 0.00 7.36 0.00 4.02
44 45 1.343176 ACCTTAGGTCTAGGCTCACCC 60.343 57.143 11.12 0.59 36.11 4.61
45 46 5.192548 AACCTTAGGTCTAGGCTCACCCT 62.193 52.174 3.62 7.75 40.88 4.34
46 47 2.177233 CCTTAGGTCTAGGCTCACCCTA 59.823 54.545 11.12 6.86 44.08 3.53
47 48 3.373877 CCTTAGGTCTAGGCTCACCCTAA 60.374 52.174 11.12 12.97 45.50 2.69
48 49 2.162264 AGGTCTAGGCTCACCCTAAC 57.838 55.000 11.12 0.00 45.50 2.34
49 50 1.646977 AGGTCTAGGCTCACCCTAACT 59.353 52.381 11.12 0.00 45.50 2.24
50 51 1.757699 GGTCTAGGCTCACCCTAACTG 59.242 57.143 4.49 0.00 45.50 3.16
51 52 2.623502 GGTCTAGGCTCACCCTAACTGA 60.624 54.545 4.49 0.00 45.50 3.41
52 53 3.097614 GTCTAGGCTCACCCTAACTGAA 58.902 50.000 0.00 0.00 45.50 3.02
53 54 3.097614 TCTAGGCTCACCCTAACTGAAC 58.902 50.000 0.00 0.00 45.50 3.18
54 55 1.729586 AGGCTCACCCTAACTGAACA 58.270 50.000 0.00 0.00 44.08 3.18
55 56 2.054799 AGGCTCACCCTAACTGAACAA 58.945 47.619 0.00 0.00 44.08 2.83
56 57 2.441750 AGGCTCACCCTAACTGAACAAA 59.558 45.455 0.00 0.00 44.08 2.83
57 58 3.117663 AGGCTCACCCTAACTGAACAAAA 60.118 43.478 0.00 0.00 44.08 2.44
58 59 3.826729 GGCTCACCCTAACTGAACAAAAT 59.173 43.478 0.00 0.00 0.00 1.82
59 60 5.007682 GGCTCACCCTAACTGAACAAAATA 58.992 41.667 0.00 0.00 0.00 1.40
60 61 5.652452 GGCTCACCCTAACTGAACAAAATAT 59.348 40.000 0.00 0.00 0.00 1.28
61 62 6.152831 GGCTCACCCTAACTGAACAAAATATT 59.847 38.462 0.00 0.00 0.00 1.28
62 63 7.309805 GGCTCACCCTAACTGAACAAAATATTT 60.310 37.037 0.00 0.00 0.00 1.40
63 64 8.088365 GCTCACCCTAACTGAACAAAATATTTT 58.912 33.333 7.64 7.64 0.00 1.82
102 103 6.601741 GACAAAATGTCAAGCAATTCCAAA 57.398 33.333 5.65 0.00 46.22 3.28
103 104 7.193377 GACAAAATGTCAAGCAATTCCAAAT 57.807 32.000 5.65 0.00 46.22 2.32
104 105 7.571080 ACAAAATGTCAAGCAATTCCAAATT 57.429 28.000 0.00 0.00 0.00 1.82
105 106 7.998580 ACAAAATGTCAAGCAATTCCAAATTT 58.001 26.923 0.00 0.00 0.00 1.82
106 107 8.468399 ACAAAATGTCAAGCAATTCCAAATTTT 58.532 25.926 0.00 0.00 0.00 1.82
107 108 9.303537 CAAAATGTCAAGCAATTCCAAATTTTT 57.696 25.926 0.00 0.00 0.00 1.94
139 140 9.586435 TGAATATGATACAGTGTTGTACTCAAG 57.414 33.333 0.00 0.00 42.29 3.02
140 141 9.587772 GAATATGATACAGTGTTGTACTCAAGT 57.412 33.333 0.00 0.00 42.29 3.16
141 142 8.932945 ATATGATACAGTGTTGTACTCAAGTG 57.067 34.615 0.00 0.00 42.29 3.16
142 143 6.156748 TGATACAGTGTTGTACTCAAGTGT 57.843 37.500 0.00 1.60 42.29 3.55
143 144 7.279750 TGATACAGTGTTGTACTCAAGTGTA 57.720 36.000 0.00 10.38 42.29 2.90
144 145 7.718525 TGATACAGTGTTGTACTCAAGTGTAA 58.281 34.615 0.00 0.00 42.29 2.41
145 146 8.198778 TGATACAGTGTTGTACTCAAGTGTAAA 58.801 33.333 0.00 4.35 42.29 2.01
146 147 8.951787 ATACAGTGTTGTACTCAAGTGTAAAA 57.048 30.769 0.00 0.00 42.29 1.52
147 148 7.859325 ACAGTGTTGTACTCAAGTGTAAAAT 57.141 32.000 0.00 0.00 37.60 1.82
148 149 8.951787 ACAGTGTTGTACTCAAGTGTAAAATA 57.048 30.769 0.00 0.00 37.60 1.40
149 150 9.555727 ACAGTGTTGTACTCAAGTGTAAAATAT 57.444 29.630 0.00 0.00 37.60 1.28
171 172 9.467258 AATATTGTGAACAAATGACTTCTTGTG 57.533 29.630 0.00 0.00 39.55 3.33
172 173 5.247507 TGTGAACAAATGACTTCTTGTGG 57.752 39.130 0.00 0.00 35.95 4.17
173 174 4.044426 GTGAACAAATGACTTCTTGTGGC 58.956 43.478 0.00 0.00 35.95 5.01
174 175 3.068024 TGAACAAATGACTTCTTGTGGCC 59.932 43.478 0.00 0.00 35.95 5.36
175 176 2.949447 ACAAATGACTTCTTGTGGCCT 58.051 42.857 3.32 0.00 34.52 5.19
176 177 3.299503 ACAAATGACTTCTTGTGGCCTT 58.700 40.909 3.32 0.00 34.52 4.35
177 178 3.319122 ACAAATGACTTCTTGTGGCCTTC 59.681 43.478 3.32 0.00 34.52 3.46
178 179 2.957402 ATGACTTCTTGTGGCCTTCA 57.043 45.000 3.32 0.00 0.00 3.02
179 180 2.260844 TGACTTCTTGTGGCCTTCAG 57.739 50.000 3.32 0.00 0.00 3.02
180 181 1.490490 TGACTTCTTGTGGCCTTCAGT 59.510 47.619 3.32 0.00 0.00 3.41
181 182 1.876156 GACTTCTTGTGGCCTTCAGTG 59.124 52.381 3.32 1.29 0.00 3.66
182 183 0.595095 CTTCTTGTGGCCTTCAGTGC 59.405 55.000 3.32 0.00 0.00 4.40
183 184 1.165907 TTCTTGTGGCCTTCAGTGCG 61.166 55.000 3.32 0.00 0.00 5.34
184 185 3.259425 CTTGTGGCCTTCAGTGCGC 62.259 63.158 3.32 0.00 0.00 6.09
185 186 4.560743 TGTGGCCTTCAGTGCGCA 62.561 61.111 5.66 5.66 0.00 6.09
186 187 3.730761 GTGGCCTTCAGTGCGCAG 61.731 66.667 12.22 0.00 0.00 5.18
224 225 9.878667 TCGGTTCTATATGAAAGTTACAATTCA 57.121 29.630 6.17 6.17 39.66 2.57
233 234 7.906611 TGAAAGTTACAATTCATGTTTGTCG 57.093 32.000 16.41 0.00 43.63 4.35
234 235 7.698628 TGAAAGTTACAATTCATGTTTGTCGA 58.301 30.769 16.41 7.64 43.63 4.20
235 236 8.184848 TGAAAGTTACAATTCATGTTTGTCGAA 58.815 29.630 16.41 7.39 43.63 3.71
236 237 8.918961 AAAGTTACAATTCATGTTTGTCGAAA 57.081 26.923 16.41 6.86 43.63 3.46
237 238 7.908193 AGTTACAATTCATGTTTGTCGAAAC 57.092 32.000 16.41 15.07 43.63 2.78
238 239 7.703328 AGTTACAATTCATGTTTGTCGAAACT 58.297 30.769 16.41 16.45 43.63 2.66
239 240 7.643764 AGTTACAATTCATGTTTGTCGAAACTG 59.356 33.333 18.95 0.66 43.63 3.16
240 241 4.739716 ACAATTCATGTTTGTCGAAACTGC 59.260 37.500 9.89 0.00 40.06 4.40
241 242 4.566545 ATTCATGTTTGTCGAAACTGCA 57.433 36.364 1.96 0.00 41.87 4.41
242 243 4.362932 TTCATGTTTGTCGAAACTGCAA 57.637 36.364 1.96 0.00 41.87 4.08
243 244 3.690422 TCATGTTTGTCGAAACTGCAAC 58.310 40.909 1.96 0.00 41.87 4.17
244 245 3.376859 TCATGTTTGTCGAAACTGCAACT 59.623 39.130 1.96 0.00 41.87 3.16
245 246 3.840890 TGTTTGTCGAAACTGCAACTT 57.159 38.095 1.96 0.00 41.87 2.66
246 247 4.167554 TGTTTGTCGAAACTGCAACTTT 57.832 36.364 1.96 0.00 41.87 2.66
247 248 4.551388 TGTTTGTCGAAACTGCAACTTTT 58.449 34.783 1.96 0.00 41.87 2.27
248 249 4.985409 TGTTTGTCGAAACTGCAACTTTTT 59.015 33.333 1.96 0.00 41.87 1.94
249 250 6.150318 TGTTTGTCGAAACTGCAACTTTTTA 58.850 32.000 1.96 0.00 41.87 1.52
250 251 6.809196 TGTTTGTCGAAACTGCAACTTTTTAT 59.191 30.769 1.96 0.00 41.87 1.40
251 252 7.008810 TGTTTGTCGAAACTGCAACTTTTTATC 59.991 33.333 1.96 0.00 41.87 1.75
252 253 6.371809 TGTCGAAACTGCAACTTTTTATCT 57.628 33.333 0.00 0.00 0.00 1.98
253 254 7.485418 TGTCGAAACTGCAACTTTTTATCTA 57.515 32.000 0.00 0.00 0.00 1.98
254 255 7.349711 TGTCGAAACTGCAACTTTTTATCTAC 58.650 34.615 0.00 0.00 0.00 2.59
255 256 6.795593 GTCGAAACTGCAACTTTTTATCTACC 59.204 38.462 0.00 0.00 0.00 3.18
256 257 6.708949 TCGAAACTGCAACTTTTTATCTACCT 59.291 34.615 0.00 0.00 0.00 3.08
257 258 7.874016 TCGAAACTGCAACTTTTTATCTACCTA 59.126 33.333 0.00 0.00 0.00 3.08
258 259 8.169268 CGAAACTGCAACTTTTTATCTACCTAG 58.831 37.037 0.00 0.00 0.00 3.02
259 260 9.216117 GAAACTGCAACTTTTTATCTACCTAGA 57.784 33.333 0.00 0.00 36.65 2.43
260 261 9.569122 AAACTGCAACTTTTTATCTACCTAGAA 57.431 29.630 0.00 0.00 35.69 2.10
261 262 8.779354 ACTGCAACTTTTTATCTACCTAGAAG 57.221 34.615 0.00 0.00 35.69 2.85
262 263 8.594550 ACTGCAACTTTTTATCTACCTAGAAGA 58.405 33.333 0.00 0.00 35.69 2.87
263 264 9.436957 CTGCAACTTTTTATCTACCTAGAAGAA 57.563 33.333 0.00 0.00 35.69 2.52
264 265 9.216117 TGCAACTTTTTATCTACCTAGAAGAAC 57.784 33.333 0.00 0.00 35.69 3.01
265 266 9.216117 GCAACTTTTTATCTACCTAGAAGAACA 57.784 33.333 0.00 0.00 35.69 3.18
267 268 9.722184 AACTTTTTATCTACCTAGAAGAACACC 57.278 33.333 0.00 0.00 35.69 4.16
268 269 8.319881 ACTTTTTATCTACCTAGAAGAACACCC 58.680 37.037 0.00 0.00 35.69 4.61
269 270 7.801893 TTTTATCTACCTAGAAGAACACCCA 57.198 36.000 0.00 0.00 35.69 4.51
270 271 7.801893 TTTATCTACCTAGAAGAACACCCAA 57.198 36.000 0.00 0.00 35.69 4.12
271 272 7.801893 TTATCTACCTAGAAGAACACCCAAA 57.198 36.000 0.00 0.00 35.69 3.28
272 273 6.893020 ATCTACCTAGAAGAACACCCAAAT 57.107 37.500 0.00 0.00 35.69 2.32
273 274 6.697641 TCTACCTAGAAGAACACCCAAATT 57.302 37.500 0.00 0.00 0.00 1.82
274 275 7.801893 TCTACCTAGAAGAACACCCAAATTA 57.198 36.000 0.00 0.00 0.00 1.40
275 276 8.388656 TCTACCTAGAAGAACACCCAAATTAT 57.611 34.615 0.00 0.00 0.00 1.28
276 277 8.832735 TCTACCTAGAAGAACACCCAAATTATT 58.167 33.333 0.00 0.00 0.00 1.40
277 278 9.462606 CTACCTAGAAGAACACCCAAATTATTT 57.537 33.333 0.00 0.00 0.00 1.40
278 279 8.349568 ACCTAGAAGAACACCCAAATTATTTC 57.650 34.615 0.00 0.00 0.00 2.17
279 280 8.170730 ACCTAGAAGAACACCCAAATTATTTCT 58.829 33.333 0.00 0.00 0.00 2.52
280 281 9.025041 CCTAGAAGAACACCCAAATTATTTCTT 57.975 33.333 0.00 0.00 36.30 2.52
281 282 9.846248 CTAGAAGAACACCCAAATTATTTCTTG 57.154 33.333 0.00 0.00 34.29 3.02
282 283 8.477419 AGAAGAACACCCAAATTATTTCTTGA 57.523 30.769 0.00 0.00 34.29 3.02
283 284 8.360390 AGAAGAACACCCAAATTATTTCTTGAC 58.640 33.333 0.00 0.00 34.29 3.18
284 285 7.595819 AGAACACCCAAATTATTTCTTGACA 57.404 32.000 0.00 0.00 0.00 3.58
285 286 8.017418 AGAACACCCAAATTATTTCTTGACAA 57.983 30.769 0.00 0.00 0.00 3.18
286 287 8.482128 AGAACACCCAAATTATTTCTTGACAAA 58.518 29.630 0.00 0.00 0.00 2.83
287 288 9.103861 GAACACCCAAATTATTTCTTGACAAAA 57.896 29.630 0.00 0.00 0.00 2.44
288 289 8.432110 ACACCCAAATTATTTCTTGACAAAAC 57.568 30.769 0.00 0.00 0.00 2.43
289 290 8.264347 ACACCCAAATTATTTCTTGACAAAACT 58.736 29.630 0.00 0.00 0.00 2.66
290 291 9.108284 CACCCAAATTATTTCTTGACAAAACTT 57.892 29.630 0.00 0.00 0.00 2.66
291 292 9.325198 ACCCAAATTATTTCTTGACAAAACTTC 57.675 29.630 0.00 0.00 0.00 3.01
292 293 9.323985 CCCAAATTATTTCTTGACAAAACTTCA 57.676 29.630 0.00 0.00 0.00 3.02
296 297 9.868277 AATTATTTCTTGACAAAACTTCACACA 57.132 25.926 0.00 0.00 0.00 3.72
300 301 8.909708 TTTCTTGACAAAACTTCACACATAAG 57.090 30.769 0.00 0.00 0.00 1.73
301 302 7.624360 TCTTGACAAAACTTCACACATAAGT 57.376 32.000 0.00 0.00 38.82 2.24
302 303 8.725405 TCTTGACAAAACTTCACACATAAGTA 57.275 30.769 0.00 0.00 36.17 2.24
303 304 8.826710 TCTTGACAAAACTTCACACATAAGTAG 58.173 33.333 0.00 0.00 36.17 2.57
304 305 8.725405 TTGACAAAACTTCACACATAAGTAGA 57.275 30.769 0.00 0.00 36.17 2.59
305 306 8.725405 TGACAAAACTTCACACATAAGTAGAA 57.275 30.769 0.00 0.00 36.17 2.10
306 307 8.609176 TGACAAAACTTCACACATAAGTAGAAC 58.391 33.333 0.00 0.00 36.17 3.01
307 308 8.500753 ACAAAACTTCACACATAAGTAGAACA 57.499 30.769 0.00 0.00 36.17 3.18
308 309 8.395633 ACAAAACTTCACACATAAGTAGAACAC 58.604 33.333 0.00 0.00 36.17 3.32
309 310 7.492352 AAACTTCACACATAAGTAGAACACC 57.508 36.000 0.00 0.00 36.17 4.16
310 311 5.548406 ACTTCACACATAAGTAGAACACCC 58.452 41.667 0.00 0.00 35.44 4.61
311 312 5.071250 ACTTCACACATAAGTAGAACACCCA 59.929 40.000 0.00 0.00 35.44 4.51
312 313 5.554437 TCACACATAAGTAGAACACCCAA 57.446 39.130 0.00 0.00 0.00 4.12
313 314 5.302360 TCACACATAAGTAGAACACCCAAC 58.698 41.667 0.00 0.00 0.00 3.77
314 315 4.454504 CACACATAAGTAGAACACCCAACC 59.545 45.833 0.00 0.00 0.00 3.77
315 316 4.103469 ACACATAAGTAGAACACCCAACCA 59.897 41.667 0.00 0.00 0.00 3.67
316 317 5.222048 ACACATAAGTAGAACACCCAACCAT 60.222 40.000 0.00 0.00 0.00 3.55
317 318 5.123820 CACATAAGTAGAACACCCAACCATG 59.876 44.000 0.00 0.00 0.00 3.66
318 319 5.013704 ACATAAGTAGAACACCCAACCATGA 59.986 40.000 0.00 0.00 0.00 3.07
319 320 4.657814 AAGTAGAACACCCAACCATGAT 57.342 40.909 0.00 0.00 0.00 2.45
320 321 4.222124 AGTAGAACACCCAACCATGATC 57.778 45.455 0.00 0.00 0.00 2.92
321 322 3.587061 AGTAGAACACCCAACCATGATCA 59.413 43.478 0.00 0.00 0.00 2.92
322 323 3.744940 AGAACACCCAACCATGATCAT 57.255 42.857 1.18 1.18 0.00 2.45
323 324 3.624777 AGAACACCCAACCATGATCATC 58.375 45.455 4.86 0.00 0.00 2.92
324 325 3.010472 AGAACACCCAACCATGATCATCA 59.990 43.478 4.86 0.00 0.00 3.07
325 326 2.726821 ACACCCAACCATGATCATCAC 58.273 47.619 4.86 0.00 0.00 3.06
326 327 1.672363 CACCCAACCATGATCATCACG 59.328 52.381 4.86 0.00 0.00 4.35
327 328 1.559219 ACCCAACCATGATCATCACGA 59.441 47.619 4.86 0.00 0.00 4.35
328 329 2.026356 ACCCAACCATGATCATCACGAA 60.026 45.455 4.86 0.00 0.00 3.85
329 330 3.016031 CCCAACCATGATCATCACGAAA 58.984 45.455 4.86 0.00 0.00 3.46
330 331 3.065786 CCCAACCATGATCATCACGAAAG 59.934 47.826 4.86 0.00 0.00 2.62
331 332 3.065786 CCAACCATGATCATCACGAAAGG 59.934 47.826 4.86 4.82 0.00 3.11
332 333 2.923121 ACCATGATCATCACGAAAGGG 58.077 47.619 4.86 4.06 0.00 3.95
333 334 2.239654 ACCATGATCATCACGAAAGGGT 59.760 45.455 4.86 4.74 34.73 4.34
334 335 3.282021 CCATGATCATCACGAAAGGGTT 58.718 45.455 4.86 0.00 34.73 4.11
335 336 3.696051 CCATGATCATCACGAAAGGGTTT 59.304 43.478 4.86 0.00 34.73 3.27
336 337 4.201950 CCATGATCATCACGAAAGGGTTTC 60.202 45.833 4.86 0.00 34.73 2.78
337 338 4.014569 TGATCATCACGAAAGGGTTTCA 57.985 40.909 0.00 0.00 39.63 2.69
338 339 4.588899 TGATCATCACGAAAGGGTTTCAT 58.411 39.130 0.00 0.00 39.63 2.57
339 340 5.739959 TGATCATCACGAAAGGGTTTCATA 58.260 37.500 0.00 0.00 39.63 2.15
340 341 6.176896 TGATCATCACGAAAGGGTTTCATAA 58.823 36.000 0.00 0.00 39.63 1.90
341 342 6.828273 TGATCATCACGAAAGGGTTTCATAAT 59.172 34.615 0.00 0.00 39.63 1.28
342 343 7.339212 TGATCATCACGAAAGGGTTTCATAATT 59.661 33.333 0.00 0.00 39.63 1.40
343 344 6.851609 TCATCACGAAAGGGTTTCATAATTG 58.148 36.000 0.00 0.00 39.63 2.32
344 345 6.432783 TCATCACGAAAGGGTTTCATAATTGT 59.567 34.615 0.00 0.00 39.63 2.71
345 346 6.642707 TCACGAAAGGGTTTCATAATTGTT 57.357 33.333 0.00 0.00 39.63 2.83
346 347 7.045126 TCACGAAAGGGTTTCATAATTGTTT 57.955 32.000 0.00 0.00 39.63 2.83
347 348 6.920758 TCACGAAAGGGTTTCATAATTGTTTG 59.079 34.615 0.00 0.00 39.63 2.93
348 349 6.145371 CACGAAAGGGTTTCATAATTGTTTGG 59.855 38.462 0.00 0.00 39.63 3.28
349 350 6.041069 ACGAAAGGGTTTCATAATTGTTTGGA 59.959 34.615 0.00 0.00 39.63 3.53
350 351 7.096551 CGAAAGGGTTTCATAATTGTTTGGAT 58.903 34.615 0.68 0.00 39.63 3.41
351 352 7.602265 CGAAAGGGTTTCATAATTGTTTGGATT 59.398 33.333 0.68 0.00 39.63 3.01
352 353 9.283768 GAAAGGGTTTCATAATTGTTTGGATTT 57.716 29.630 0.00 0.00 39.45 2.17
353 354 8.846943 AAGGGTTTCATAATTGTTTGGATTTC 57.153 30.769 0.00 0.00 0.00 2.17
354 355 8.206126 AGGGTTTCATAATTGTTTGGATTTCT 57.794 30.769 0.00 0.00 0.00 2.52
355 356 8.659527 AGGGTTTCATAATTGTTTGGATTTCTT 58.340 29.630 0.00 0.00 0.00 2.52
356 357 9.283768 GGGTTTCATAATTGTTTGGATTTCTTT 57.716 29.630 0.00 0.00 0.00 2.52
392 393 8.786937 AAATTGAAATGATGTATACGATGCAC 57.213 30.769 0.00 0.00 0.00 4.57
393 394 5.922739 TGAAATGATGTATACGATGCACC 57.077 39.130 0.00 0.00 0.00 5.01
394 395 5.610398 TGAAATGATGTATACGATGCACCT 58.390 37.500 0.00 0.00 0.00 4.00
395 396 5.466393 TGAAATGATGTATACGATGCACCTG 59.534 40.000 0.00 0.00 0.00 4.00
396 397 4.871933 ATGATGTATACGATGCACCTGA 57.128 40.909 0.00 0.00 0.00 3.86
397 398 4.664150 TGATGTATACGATGCACCTGAA 57.336 40.909 0.00 0.00 0.00 3.02
398 399 4.368315 TGATGTATACGATGCACCTGAAC 58.632 43.478 0.00 0.00 0.00 3.18
399 400 4.099419 TGATGTATACGATGCACCTGAACT 59.901 41.667 0.00 0.00 0.00 3.01
400 401 5.300792 TGATGTATACGATGCACCTGAACTA 59.699 40.000 0.00 0.00 0.00 2.24
401 402 5.183014 TGTATACGATGCACCTGAACTAG 57.817 43.478 0.00 0.00 0.00 2.57
402 403 4.643334 TGTATACGATGCACCTGAACTAGT 59.357 41.667 0.00 0.00 0.00 2.57
403 404 2.370281 ACGATGCACCTGAACTAGTG 57.630 50.000 0.00 0.00 37.05 2.74
404 405 1.893137 ACGATGCACCTGAACTAGTGA 59.107 47.619 0.00 0.00 36.01 3.41
405 406 2.299013 ACGATGCACCTGAACTAGTGAA 59.701 45.455 0.00 0.00 36.01 3.18
406 407 3.055819 ACGATGCACCTGAACTAGTGAAT 60.056 43.478 0.00 0.00 34.82 2.57
407 408 3.935203 CGATGCACCTGAACTAGTGAATT 59.065 43.478 0.00 0.00 32.13 2.17
408 409 5.109210 CGATGCACCTGAACTAGTGAATTA 58.891 41.667 0.00 0.00 32.13 1.40
409 410 5.580691 CGATGCACCTGAACTAGTGAATTAA 59.419 40.000 0.00 0.00 32.13 1.40
410 411 6.258727 CGATGCACCTGAACTAGTGAATTAAT 59.741 38.462 0.00 0.00 32.13 1.40
411 412 7.438160 CGATGCACCTGAACTAGTGAATTAATA 59.562 37.037 0.00 0.00 32.13 0.98
412 413 9.277783 GATGCACCTGAACTAGTGAATTAATAT 57.722 33.333 0.00 0.00 32.13 1.28
452 453 2.462456 TTTTTGCGGCCATTAATGCA 57.538 40.000 10.11 0.00 35.15 3.96
453 454 2.007360 TTTTGCGGCCATTAATGCAG 57.993 45.000 10.11 7.61 38.75 4.41
454 455 0.894141 TTTGCGGCCATTAATGCAGT 59.106 45.000 10.11 0.00 38.75 4.40
455 456 1.756430 TTGCGGCCATTAATGCAGTA 58.244 45.000 10.11 3.76 38.75 2.74
456 457 1.979855 TGCGGCCATTAATGCAGTAT 58.020 45.000 10.11 0.00 32.73 2.12
457 458 1.608109 TGCGGCCATTAATGCAGTATG 59.392 47.619 10.11 0.00 40.87 2.39
519 520 7.678947 AATATAGTAATGCATTGAGAGTGCC 57.321 36.000 22.27 0.07 41.83 5.01
520 521 3.354948 AGTAATGCATTGAGAGTGCCA 57.645 42.857 22.27 0.00 41.83 4.92
521 522 3.894759 AGTAATGCATTGAGAGTGCCAT 58.105 40.909 22.27 0.00 41.83 4.40
522 523 3.630769 AGTAATGCATTGAGAGTGCCATG 59.369 43.478 22.27 0.00 41.83 3.66
523 524 2.430248 ATGCATTGAGAGTGCCATGA 57.570 45.000 0.00 0.00 41.83 3.07
524 525 2.430248 TGCATTGAGAGTGCCATGAT 57.570 45.000 0.00 0.00 41.83 2.45
525 526 2.021457 TGCATTGAGAGTGCCATGATG 58.979 47.619 0.00 0.00 41.83 3.07
526 527 1.337071 GCATTGAGAGTGCCATGATGG 59.663 52.381 7.21 7.21 41.55 3.51
538 539 2.557317 CCATGATGGCAAAAATGGAGC 58.443 47.619 17.10 0.00 41.84 4.70
539 540 2.093394 CCATGATGGCAAAAATGGAGCA 60.093 45.455 17.10 0.00 41.84 4.26
540 541 3.433031 CCATGATGGCAAAAATGGAGCAT 60.433 43.478 17.10 0.00 41.84 3.79
541 542 4.202274 CCATGATGGCAAAAATGGAGCATA 60.202 41.667 17.10 0.00 41.84 3.14
542 543 5.512404 CCATGATGGCAAAAATGGAGCATAT 60.512 40.000 17.10 0.00 41.84 1.78
543 544 5.204409 TGATGGCAAAAATGGAGCATATC 57.796 39.130 0.00 0.00 0.00 1.63
544 545 4.897076 TGATGGCAAAAATGGAGCATATCT 59.103 37.500 0.00 0.00 0.00 1.98
545 546 5.364446 TGATGGCAAAAATGGAGCATATCTT 59.636 36.000 0.00 0.00 0.00 2.40
546 547 5.680594 TGGCAAAAATGGAGCATATCTTT 57.319 34.783 0.00 0.00 0.00 2.52
547 548 6.052405 TGGCAAAAATGGAGCATATCTTTT 57.948 33.333 0.00 0.00 0.00 2.27
548 549 6.108015 TGGCAAAAATGGAGCATATCTTTTC 58.892 36.000 0.00 0.00 0.00 2.29
549 550 6.108015 GGCAAAAATGGAGCATATCTTTTCA 58.892 36.000 0.00 0.00 0.00 2.69
550 551 6.594937 GGCAAAAATGGAGCATATCTTTTCAA 59.405 34.615 0.00 0.00 0.00 2.69
551 552 7.119553 GGCAAAAATGGAGCATATCTTTTCAAA 59.880 33.333 0.00 0.00 0.00 2.69
552 553 7.959109 GCAAAAATGGAGCATATCTTTTCAAAC 59.041 33.333 0.00 0.00 0.00 2.93
553 554 8.991026 CAAAAATGGAGCATATCTTTTCAAACA 58.009 29.630 0.00 0.00 0.00 2.83
554 555 9.729281 AAAAATGGAGCATATCTTTTCAAACAT 57.271 25.926 0.00 0.00 0.00 2.71
555 556 8.712285 AAATGGAGCATATCTTTTCAAACATG 57.288 30.769 0.00 0.00 0.00 3.21
556 557 7.649533 ATGGAGCATATCTTTTCAAACATGA 57.350 32.000 0.00 0.00 0.00 3.07
557 558 6.855836 TGGAGCATATCTTTTCAAACATGAC 58.144 36.000 0.00 0.00 0.00 3.06
558 559 6.433716 TGGAGCATATCTTTTCAAACATGACA 59.566 34.615 0.00 0.00 0.00 3.58
559 560 7.039853 TGGAGCATATCTTTTCAAACATGACAA 60.040 33.333 0.00 0.00 0.00 3.18
560 561 7.814107 GGAGCATATCTTTTCAAACATGACAAA 59.186 33.333 0.00 0.00 0.00 2.83
561 562 9.195411 GAGCATATCTTTTCAAACATGACAAAA 57.805 29.630 0.00 0.00 0.00 2.44
562 563 9.715121 AGCATATCTTTTCAAACATGACAAAAT 57.285 25.926 0.00 0.00 0.00 1.82
585 586 9.836864 AAATTTTCTTTGATATTATTGCCCCTC 57.163 29.630 0.00 0.00 0.00 4.30
586 587 6.976934 TTTCTTTGATATTATTGCCCCTCC 57.023 37.500 0.00 0.00 0.00 4.30
587 588 5.661503 TCTTTGATATTATTGCCCCTCCA 57.338 39.130 0.00 0.00 0.00 3.86
588 589 6.218195 TCTTTGATATTATTGCCCCTCCAT 57.782 37.500 0.00 0.00 0.00 3.41
589 590 6.623329 TCTTTGATATTATTGCCCCTCCATT 58.377 36.000 0.00 0.00 0.00 3.16
590 591 6.721208 TCTTTGATATTATTGCCCCTCCATTC 59.279 38.462 0.00 0.00 0.00 2.67
591 592 5.597430 TGATATTATTGCCCCTCCATTCA 57.403 39.130 0.00 0.00 0.00 2.57
592 593 5.963092 TGATATTATTGCCCCTCCATTCAA 58.037 37.500 0.00 0.00 0.00 2.69
593 594 5.774690 TGATATTATTGCCCCTCCATTCAAC 59.225 40.000 0.00 0.00 0.00 3.18
594 595 2.452600 TATTGCCCCTCCATTCAACC 57.547 50.000 0.00 0.00 0.00 3.77
595 596 0.325577 ATTGCCCCTCCATTCAACCC 60.326 55.000 0.00 0.00 0.00 4.11
596 597 2.440247 GCCCCTCCATTCAACCCG 60.440 66.667 0.00 0.00 0.00 5.28
597 598 2.275418 CCCCTCCATTCAACCCGG 59.725 66.667 0.00 0.00 0.00 5.73
598 599 2.275418 CCCTCCATTCAACCCGGG 59.725 66.667 22.25 22.25 0.00 5.73
599 600 2.612493 CCCTCCATTCAACCCGGGT 61.612 63.158 24.16 24.16 0.00 5.28
600 601 1.378514 CCTCCATTCAACCCGGGTG 60.379 63.158 31.05 21.31 0.00 4.61
601 602 2.034999 TCCATTCAACCCGGGTGC 59.965 61.111 31.05 0.00 0.00 5.01
602 603 2.282816 CCATTCAACCCGGGTGCA 60.283 61.111 31.05 14.70 0.00 4.57
603 604 2.635443 CCATTCAACCCGGGTGCAC 61.635 63.158 31.05 8.80 0.00 4.57
604 605 2.282887 ATTCAACCCGGGTGCACC 60.283 61.111 31.05 28.57 0.00 5.01
605 606 3.140073 ATTCAACCCGGGTGCACCA 62.140 57.895 35.78 14.50 40.22 4.17
606 607 2.439553 ATTCAACCCGGGTGCACCAT 62.440 55.000 35.78 16.21 40.22 3.55
607 608 1.780107 TTCAACCCGGGTGCACCATA 61.780 55.000 35.78 10.67 40.22 2.74
608 609 1.077068 CAACCCGGGTGCACCATAT 60.077 57.895 35.78 16.16 40.22 1.78
609 610 1.077068 AACCCGGGTGCACCATATG 60.077 57.895 35.78 22.39 40.22 1.78
610 611 1.858739 AACCCGGGTGCACCATATGT 61.859 55.000 35.78 23.03 40.22 2.29
611 612 1.077068 CCCGGGTGCACCATATGTT 60.077 57.895 35.78 0.00 40.22 2.71
612 613 1.383456 CCCGGGTGCACCATATGTTG 61.383 60.000 35.78 15.70 40.22 3.33
613 614 1.433064 CGGGTGCACCATATGTTGC 59.567 57.895 35.78 17.59 40.22 4.17
614 615 1.031571 CGGGTGCACCATATGTTGCT 61.032 55.000 35.78 0.00 40.22 3.91
615 616 0.457035 GGGTGCACCATATGTTGCTG 59.543 55.000 35.78 4.98 39.85 4.41
616 617 1.462616 GGTGCACCATATGTTGCTGA 58.537 50.000 31.23 4.11 35.64 4.26
617 618 2.026641 GGTGCACCATATGTTGCTGAT 58.973 47.619 31.23 0.00 35.64 2.90
618 619 3.213506 GGTGCACCATATGTTGCTGATA 58.786 45.455 31.23 3.05 35.64 2.15
619 620 3.822735 GGTGCACCATATGTTGCTGATAT 59.177 43.478 31.23 0.00 35.64 1.63
620 621 4.083110 GGTGCACCATATGTTGCTGATATC 60.083 45.833 31.23 2.62 35.64 1.63
621 622 4.516321 GTGCACCATATGTTGCTGATATCA 59.484 41.667 23.56 5.07 0.00 2.15
622 623 5.182570 GTGCACCATATGTTGCTGATATCAT 59.817 40.000 23.56 0.00 0.00 2.45
637 638 9.158233 TGCTGATATCATTATCACACACATATG 57.842 33.333 5.72 0.00 39.40 1.78
638 639 9.374838 GCTGATATCATTATCACACACATATGA 57.625 33.333 10.38 0.00 39.40 2.15
642 643 6.866010 TCATTATCACACACATATGAAGGC 57.134 37.500 10.38 0.00 0.00 4.35
643 644 5.466393 TCATTATCACACACATATGAAGGCG 59.534 40.000 10.38 0.63 0.00 5.52
644 645 2.760634 TCACACACATATGAAGGCGT 57.239 45.000 10.38 1.22 0.00 5.68
656 657 9.203421 CACATATGAAGGCGTAGTATCATTTTA 57.797 33.333 10.38 0.00 34.54 1.52
714 715 5.421693 CCCCACAAAAATAATCTCCATGTCA 59.578 40.000 0.00 0.00 0.00 3.58
715 716 6.070881 CCCCACAAAAATAATCTCCATGTCAA 60.071 38.462 0.00 0.00 0.00 3.18
716 717 7.385267 CCCACAAAAATAATCTCCATGTCAAA 58.615 34.615 0.00 0.00 0.00 2.69
717 718 7.877097 CCCACAAAAATAATCTCCATGTCAAAA 59.123 33.333 0.00 0.00 0.00 2.44
718 719 8.928733 CCACAAAAATAATCTCCATGTCAAAAG 58.071 33.333 0.00 0.00 0.00 2.27
719 720 9.695526 CACAAAAATAATCTCCATGTCAAAAGA 57.304 29.630 0.00 0.00 0.00 2.52
722 723 9.933723 AAAAATAATCTCCATGTCAAAAGAAGG 57.066 29.630 0.00 0.00 0.00 3.46
723 724 8.884124 AAATAATCTCCATGTCAAAAGAAGGA 57.116 30.769 0.00 0.00 0.00 3.36
724 725 9.484806 AAATAATCTCCATGTCAAAAGAAGGAT 57.515 29.630 0.00 0.00 0.00 3.24
725 726 8.688747 ATAATCTCCATGTCAAAAGAAGGATC 57.311 34.615 0.00 0.00 0.00 3.36
726 727 5.503634 TCTCCATGTCAAAAGAAGGATCA 57.496 39.130 0.00 0.00 0.00 2.92
727 728 5.494724 TCTCCATGTCAAAAGAAGGATCAG 58.505 41.667 0.00 0.00 0.00 2.90
728 729 5.013495 TCTCCATGTCAAAAGAAGGATCAGT 59.987 40.000 0.00 0.00 0.00 3.41
729 730 5.005740 TCCATGTCAAAAGAAGGATCAGTG 58.994 41.667 0.00 0.00 0.00 3.66
730 731 5.005740 CCATGTCAAAAGAAGGATCAGTGA 58.994 41.667 0.00 0.00 0.00 3.41
731 732 5.123502 CCATGTCAAAAGAAGGATCAGTGAG 59.876 44.000 0.00 0.00 0.00 3.51
732 733 5.296151 TGTCAAAAGAAGGATCAGTGAGT 57.704 39.130 0.00 0.00 0.00 3.41
733 734 5.684704 TGTCAAAAGAAGGATCAGTGAGTT 58.315 37.500 0.00 0.00 0.00 3.01
734 735 5.528690 TGTCAAAAGAAGGATCAGTGAGTTG 59.471 40.000 0.00 0.00 0.00 3.16
735 736 5.529060 GTCAAAAGAAGGATCAGTGAGTTGT 59.471 40.000 0.00 0.00 0.00 3.32
736 737 5.760253 TCAAAAGAAGGATCAGTGAGTTGTC 59.240 40.000 0.00 0.00 0.00 3.18
737 738 4.963318 AAGAAGGATCAGTGAGTTGTCA 57.037 40.909 0.00 0.00 0.00 3.58
738 739 4.963318 AGAAGGATCAGTGAGTTGTCAA 57.037 40.909 0.00 0.00 33.27 3.18
739 740 4.892433 AGAAGGATCAGTGAGTTGTCAAG 58.108 43.478 0.00 0.00 33.27 3.02
740 741 4.590647 AGAAGGATCAGTGAGTTGTCAAGA 59.409 41.667 0.00 0.00 33.27 3.02
741 742 4.533919 AGGATCAGTGAGTTGTCAAGAG 57.466 45.455 0.00 0.00 33.27 2.85
753 754 6.484643 TGAGTTGTCAAGAGAAAAGAAGGATG 59.515 38.462 0.00 0.00 0.00 3.51
782 784 1.433064 CATGCATGTACCCGTTGCC 59.567 57.895 18.91 0.00 35.51 4.52
853 855 7.607991 CCAAAACAGCTCTATATATACCCAAGG 59.392 40.741 0.00 0.00 0.00 3.61
1448 1451 2.754658 GGAGAAGCGGGAGTCGGA 60.755 66.667 0.00 0.00 39.69 4.55
1537 1540 1.142097 GAGCCCTCCGACTAGCAAC 59.858 63.158 0.00 0.00 0.00 4.17
1569 1572 3.864789 TCCACTTCTTTTGCCTCTCTT 57.135 42.857 0.00 0.00 0.00 2.85
1577 1580 0.321653 TTTGCCTCTCTTCTTCCGCC 60.322 55.000 0.00 0.00 0.00 6.13
1629 1632 0.105593 GATCGATTGCTGAGGAGCCA 59.894 55.000 0.00 0.00 45.57 4.75
1635 1638 2.291209 TTGCTGAGGAGCCATTTTGA 57.709 45.000 0.00 0.00 45.57 2.69
1666 1670 6.763610 CGTCAAGCTTAATCTCCTTAATCCTT 59.236 38.462 0.00 0.00 0.00 3.36
1670 1674 9.007901 CAAGCTTAATCTCCTTAATCCTTATGG 57.992 37.037 0.00 0.00 33.08 2.74
1678 1682 7.338710 TCTCCTTAATCCTTATGGAAAGTGTG 58.661 38.462 0.77 0.00 46.80 3.82
1725 1729 5.563867 CGGAAGTCGATTGGGAAATTGAAAA 60.564 40.000 0.00 0.00 42.43 2.29
1778 1782 0.179018 AAACAGACTGTGGACTGGGC 60.179 55.000 9.33 0.00 39.01 5.36
1797 1801 4.082463 TGGGCTCGTTGATTTGTTTATTCC 60.082 41.667 0.00 0.00 0.00 3.01
1812 1816 4.974645 TTATTCCCGAGCTGTTCCATAT 57.025 40.909 0.00 0.00 0.00 1.78
1818 1822 3.065371 CCCGAGCTGTTCCATATTGTTTC 59.935 47.826 0.00 0.00 0.00 2.78
1819 1823 3.941483 CCGAGCTGTTCCATATTGTTTCT 59.059 43.478 0.00 0.00 0.00 2.52
1820 1824 4.034510 CCGAGCTGTTCCATATTGTTTCTC 59.965 45.833 0.00 0.00 0.00 2.87
1821 1825 4.259970 CGAGCTGTTCCATATTGTTTCTCG 60.260 45.833 0.00 0.00 34.73 4.04
1822 1826 4.832248 AGCTGTTCCATATTGTTTCTCGA 58.168 39.130 0.00 0.00 0.00 4.04
1823 1827 5.245531 AGCTGTTCCATATTGTTTCTCGAA 58.754 37.500 0.00 0.00 0.00 3.71
1824 1828 5.705441 AGCTGTTCCATATTGTTTCTCGAAA 59.295 36.000 0.00 0.00 0.00 3.46
1852 1856 7.085052 AGTTTTGCCTCCTCGATTAATTAAC 57.915 36.000 0.00 0.00 0.00 2.01
1867 1871 9.994432 CGATTAATTAACAAGAAGAGAATTGCT 57.006 29.630 0.00 0.00 0.00 3.91
1898 1902 6.385649 TTTACAGAAAATCAGGCGAAAACT 57.614 33.333 0.00 0.00 0.00 2.66
1921 1925 9.595823 AACTAATACAAACGAAGCACATACTAT 57.404 29.630 0.00 0.00 0.00 2.12
1924 1928 7.700322 ATACAAACGAAGCACATACTATCTG 57.300 36.000 0.00 0.00 0.00 2.90
1932 1936 3.703556 AGCACATACTATCTGCTCACACT 59.296 43.478 0.00 0.00 36.50 3.55
1946 1950 1.133513 TCACACTGCAAGAAACCCCAT 60.134 47.619 0.00 0.00 37.43 4.00
1950 1954 2.095263 CACTGCAAGAAACCCCATAACG 60.095 50.000 0.00 0.00 37.43 3.18
1952 1956 1.202952 TGCAAGAAACCCCATAACGGT 60.203 47.619 0.00 0.00 34.07 4.83
1956 1960 4.266714 CAAGAAACCCCATAACGGTACAT 58.733 43.478 0.00 0.00 31.69 2.29
1958 1962 3.520317 AGAAACCCCATAACGGTACATGA 59.480 43.478 0.00 0.00 31.69 3.07
2034 2038 1.301401 CCAAGAGACCGCCGACAAA 60.301 57.895 0.00 0.00 0.00 2.83
2077 2093 2.001361 GACGGGCCGAGAGATCGAAA 62.001 60.000 35.78 0.00 34.64 3.46
2152 2168 1.762370 CCCACCTTCTTTTGTTTGCCT 59.238 47.619 0.00 0.00 0.00 4.75
2160 2176 6.323739 ACCTTCTTTTGTTTGCCTCTTATTGA 59.676 34.615 0.00 0.00 0.00 2.57
2237 2253 0.882042 ACTGGCGAGCAAGTCACAAG 60.882 55.000 0.00 0.00 0.00 3.16
2265 2281 0.729690 GCGAAGAAAGCATCTGGGTC 59.270 55.000 0.00 0.00 38.79 4.46
2268 2284 2.354103 CGAAGAAAGCATCTGGGTCTGA 60.354 50.000 0.00 0.00 38.79 3.27
2281 2297 1.282157 GGGTCTGAAGTAGGTGGCAAT 59.718 52.381 0.00 0.00 0.00 3.56
2313 2329 0.384309 GTGGTCGTGTCACTCACAGA 59.616 55.000 12.84 0.00 46.44 3.41
2374 2392 1.070758 ACATCTGAAACACCACGCTCT 59.929 47.619 0.00 0.00 0.00 4.09
2417 2435 1.003839 GACGCCTGACACCCAATGA 60.004 57.895 0.00 0.00 0.00 2.57
2505 2523 2.821366 CCGAGGTGATGCAGGCAC 60.821 66.667 12.66 12.66 35.56 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.872483 CCTAAGGTTTCATTGTGTATTTTTGCT 59.128 33.333 0.00 0.00 0.00 3.91
6 7 7.655732 ACCTAAGGTTTCATTGTGTATTTTTGC 59.344 33.333 0.00 0.00 27.29 3.68
7 8 9.191995 GACCTAAGGTTTCATTGTGTATTTTTG 57.808 33.333 0.00 0.00 35.25 2.44
8 9 9.143155 AGACCTAAGGTTTCATTGTGTATTTTT 57.857 29.630 0.00 0.00 35.25 1.94
9 10 8.706322 AGACCTAAGGTTTCATTGTGTATTTT 57.294 30.769 0.00 0.00 35.25 1.82
10 11 9.449719 CTAGACCTAAGGTTTCATTGTGTATTT 57.550 33.333 0.00 0.00 35.25 1.40
11 12 8.047310 CCTAGACCTAAGGTTTCATTGTGTATT 58.953 37.037 0.00 0.00 35.25 1.89
12 13 7.565680 CCTAGACCTAAGGTTTCATTGTGTAT 58.434 38.462 0.00 0.00 35.25 2.29
13 14 6.575649 GCCTAGACCTAAGGTTTCATTGTGTA 60.576 42.308 0.00 0.00 35.25 2.90
14 15 5.803470 GCCTAGACCTAAGGTTTCATTGTGT 60.803 44.000 0.00 0.00 35.25 3.72
15 16 4.636206 GCCTAGACCTAAGGTTTCATTGTG 59.364 45.833 0.00 0.00 35.25 3.33
16 17 4.536489 AGCCTAGACCTAAGGTTTCATTGT 59.464 41.667 0.00 0.00 35.25 2.71
17 18 5.104259 AGCCTAGACCTAAGGTTTCATTG 57.896 43.478 0.00 0.00 35.25 2.82
18 19 4.783227 TGAGCCTAGACCTAAGGTTTCATT 59.217 41.667 0.00 0.00 35.25 2.57
19 20 4.162509 GTGAGCCTAGACCTAAGGTTTCAT 59.837 45.833 0.00 0.00 35.25 2.57
20 21 3.514309 GTGAGCCTAGACCTAAGGTTTCA 59.486 47.826 0.00 0.00 35.25 2.69
21 22 3.118702 GGTGAGCCTAGACCTAAGGTTTC 60.119 52.174 0.00 0.00 35.25 2.78
22 23 2.838813 GGTGAGCCTAGACCTAAGGTTT 59.161 50.000 0.00 0.00 35.25 3.27
23 24 2.468915 GGTGAGCCTAGACCTAAGGTT 58.531 52.381 0.00 0.00 35.25 3.50
24 25 1.343176 GGGTGAGCCTAGACCTAAGGT 60.343 57.143 0.00 0.00 34.79 3.50
25 26 1.062810 AGGGTGAGCCTAGACCTAAGG 60.063 57.143 0.00 0.00 32.33 2.69
26 27 2.463047 AGGGTGAGCCTAGACCTAAG 57.537 55.000 0.00 0.00 32.33 2.18
27 28 3.271490 AGTTAGGGTGAGCCTAGACCTAA 59.729 47.826 10.63 0.00 40.45 2.69
28 29 2.857498 AGTTAGGGTGAGCCTAGACCTA 59.143 50.000 10.63 0.00 32.87 3.08
29 30 1.646977 AGTTAGGGTGAGCCTAGACCT 59.353 52.381 10.63 5.77 35.37 3.85
30 31 1.757699 CAGTTAGGGTGAGCCTAGACC 59.242 57.143 10.63 3.60 34.45 3.85
31 32 2.736347 TCAGTTAGGGTGAGCCTAGAC 58.264 52.381 10.63 11.56 34.45 2.59
32 33 3.097614 GTTCAGTTAGGGTGAGCCTAGA 58.902 50.000 10.63 2.39 34.45 2.43
33 34 2.832129 TGTTCAGTTAGGGTGAGCCTAG 59.168 50.000 10.63 0.00 34.45 3.02
34 35 2.897350 TGTTCAGTTAGGGTGAGCCTA 58.103 47.619 6.26 6.26 34.45 3.93
35 36 1.729586 TGTTCAGTTAGGGTGAGCCT 58.270 50.000 8.78 8.78 34.45 4.58
36 37 2.561478 TTGTTCAGTTAGGGTGAGCC 57.439 50.000 0.00 0.00 0.00 4.70
37 38 6.759497 ATATTTTGTTCAGTTAGGGTGAGC 57.241 37.500 0.00 0.00 0.00 4.26
80 81 7.571080 AATTTGGAATTGCTTGACATTTTGT 57.429 28.000 0.00 0.00 0.00 2.83
81 82 8.859517 AAAATTTGGAATTGCTTGACATTTTG 57.140 26.923 0.00 0.00 0.00 2.44
113 114 9.586435 CTTGAGTACAACACTGTATCATATTCA 57.414 33.333 0.00 0.00 40.16 2.57
114 115 9.587772 ACTTGAGTACAACACTGTATCATATTC 57.412 33.333 0.00 0.00 40.16 1.75
115 116 9.371136 CACTTGAGTACAACACTGTATCATATT 57.629 33.333 0.00 0.00 40.16 1.28
116 117 8.531982 ACACTTGAGTACAACACTGTATCATAT 58.468 33.333 0.00 0.00 40.16 1.78
117 118 7.892609 ACACTTGAGTACAACACTGTATCATA 58.107 34.615 0.00 0.00 40.16 2.15
118 119 6.759272 ACACTTGAGTACAACACTGTATCAT 58.241 36.000 0.00 0.00 40.16 2.45
119 120 6.156748 ACACTTGAGTACAACACTGTATCA 57.843 37.500 0.00 0.00 40.16 2.15
120 121 8.583810 TTTACACTTGAGTACAACACTGTATC 57.416 34.615 0.00 0.00 40.16 2.24
121 122 8.951787 TTTTACACTTGAGTACAACACTGTAT 57.048 30.769 0.00 0.00 40.16 2.29
122 123 8.951787 ATTTTACACTTGAGTACAACACTGTA 57.048 30.769 0.00 1.61 37.72 2.74
123 124 7.859325 ATTTTACACTTGAGTACAACACTGT 57.141 32.000 0.00 2.47 37.72 3.55
145 146 9.467258 CACAAGAAGTCATTTGTTCACAATATT 57.533 29.630 0.00 0.00 35.46 1.28
146 147 8.084073 CCACAAGAAGTCATTTGTTCACAATAT 58.916 33.333 0.00 0.00 35.46 1.28
147 148 7.424803 CCACAAGAAGTCATTTGTTCACAATA 58.575 34.615 0.00 0.00 35.46 1.90
148 149 6.275335 CCACAAGAAGTCATTTGTTCACAAT 58.725 36.000 0.00 0.00 35.46 2.71
149 150 5.649557 CCACAAGAAGTCATTTGTTCACAA 58.350 37.500 0.00 0.00 35.46 3.33
150 151 4.439974 GCCACAAGAAGTCATTTGTTCACA 60.440 41.667 0.00 0.00 35.46 3.58
151 152 4.044426 GCCACAAGAAGTCATTTGTTCAC 58.956 43.478 0.00 0.00 35.46 3.18
152 153 3.068024 GGCCACAAGAAGTCATTTGTTCA 59.932 43.478 0.00 0.00 35.46 3.18
153 154 3.319122 AGGCCACAAGAAGTCATTTGTTC 59.681 43.478 5.01 0.00 35.46 3.18
154 155 3.299503 AGGCCACAAGAAGTCATTTGTT 58.700 40.909 5.01 0.00 35.46 2.83
155 156 2.949447 AGGCCACAAGAAGTCATTTGT 58.051 42.857 5.01 0.00 37.99 2.83
156 157 3.318839 TGAAGGCCACAAGAAGTCATTTG 59.681 43.478 5.01 0.00 0.00 2.32
157 158 3.565307 TGAAGGCCACAAGAAGTCATTT 58.435 40.909 5.01 0.00 0.00 2.32
158 159 3.152341 CTGAAGGCCACAAGAAGTCATT 58.848 45.455 5.01 0.00 0.00 2.57
159 160 2.107204 ACTGAAGGCCACAAGAAGTCAT 59.893 45.455 5.01 0.00 0.00 3.06
160 161 1.490490 ACTGAAGGCCACAAGAAGTCA 59.510 47.619 5.01 0.00 0.00 3.41
161 162 1.876156 CACTGAAGGCCACAAGAAGTC 59.124 52.381 5.01 0.00 0.00 3.01
162 163 1.972872 CACTGAAGGCCACAAGAAGT 58.027 50.000 5.01 0.00 0.00 3.01
163 164 0.595095 GCACTGAAGGCCACAAGAAG 59.405 55.000 5.01 0.00 0.00 2.85
164 165 1.165907 CGCACTGAAGGCCACAAGAA 61.166 55.000 5.01 0.00 0.00 2.52
165 166 1.597854 CGCACTGAAGGCCACAAGA 60.598 57.895 5.01 0.00 0.00 3.02
166 167 2.949106 CGCACTGAAGGCCACAAG 59.051 61.111 5.01 0.46 0.00 3.16
167 168 3.286751 GCGCACTGAAGGCCACAA 61.287 61.111 5.01 0.00 0.00 3.33
168 169 4.560743 TGCGCACTGAAGGCCACA 62.561 61.111 5.66 3.66 0.00 4.17
169 170 3.730761 CTGCGCACTGAAGGCCAC 61.731 66.667 5.66 0.00 0.00 5.01
198 199 9.878667 TGAATTGTAACTTTCATATAGAACCGA 57.121 29.630 0.00 0.00 35.56 4.69
207 208 9.605955 CGACAAACATGAATTGTAACTTTCATA 57.394 29.630 17.40 0.00 40.90 2.15
208 209 8.349245 TCGACAAACATGAATTGTAACTTTCAT 58.651 29.630 17.40 0.00 40.90 2.57
209 210 7.698628 TCGACAAACATGAATTGTAACTTTCA 58.301 30.769 17.40 0.00 40.90 2.69
210 211 8.555166 TTCGACAAACATGAATTGTAACTTTC 57.445 30.769 17.40 7.15 40.90 2.62
211 212 8.803799 GTTTCGACAAACATGAATTGTAACTTT 58.196 29.630 17.40 0.00 40.90 2.66
212 213 8.188139 AGTTTCGACAAACATGAATTGTAACTT 58.812 29.630 17.40 8.91 43.98 2.66
213 214 7.643764 CAGTTTCGACAAACATGAATTGTAACT 59.356 33.333 17.40 18.28 43.98 2.24
214 215 7.565073 GCAGTTTCGACAAACATGAATTGTAAC 60.565 37.037 17.40 16.94 43.98 2.50
215 216 6.416455 GCAGTTTCGACAAACATGAATTGTAA 59.584 34.615 17.40 9.59 43.98 2.41
216 217 5.912396 GCAGTTTCGACAAACATGAATTGTA 59.088 36.000 17.40 5.10 43.98 2.41
217 218 4.739716 GCAGTTTCGACAAACATGAATTGT 59.260 37.500 17.41 17.41 43.98 2.71
218 219 4.739228 TGCAGTTTCGACAAACATGAATTG 59.261 37.500 0.00 7.08 43.98 2.32
219 220 4.930963 TGCAGTTTCGACAAACATGAATT 58.069 34.783 0.00 0.00 43.98 2.17
220 221 4.566545 TGCAGTTTCGACAAACATGAAT 57.433 36.364 0.00 0.00 43.98 2.57
221 222 4.101942 GTTGCAGTTTCGACAAACATGAA 58.898 39.130 0.00 0.00 43.98 2.57
222 223 3.376859 AGTTGCAGTTTCGACAAACATGA 59.623 39.130 0.00 0.00 43.98 3.07
223 224 3.694734 AGTTGCAGTTTCGACAAACATG 58.305 40.909 3.01 0.00 43.98 3.21
224 225 4.370364 AAGTTGCAGTTTCGACAAACAT 57.630 36.364 3.01 0.00 43.98 2.71
225 226 3.840890 AAGTTGCAGTTTCGACAAACA 57.159 38.095 3.01 0.00 43.98 2.83
226 227 5.509605 AAAAAGTTGCAGTTTCGACAAAC 57.490 34.783 0.00 0.00 42.14 2.93
227 228 7.254852 AGATAAAAAGTTGCAGTTTCGACAAA 58.745 30.769 0.00 0.00 0.00 2.83
228 229 6.791303 AGATAAAAAGTTGCAGTTTCGACAA 58.209 32.000 0.00 0.00 0.00 3.18
229 230 6.371809 AGATAAAAAGTTGCAGTTTCGACA 57.628 33.333 0.00 0.00 0.00 4.35
230 231 6.795593 GGTAGATAAAAAGTTGCAGTTTCGAC 59.204 38.462 0.00 0.00 0.00 4.20
231 232 6.708949 AGGTAGATAAAAAGTTGCAGTTTCGA 59.291 34.615 0.00 0.00 0.00 3.71
232 233 6.899114 AGGTAGATAAAAAGTTGCAGTTTCG 58.101 36.000 0.00 0.00 0.00 3.46
233 234 9.216117 TCTAGGTAGATAAAAAGTTGCAGTTTC 57.784 33.333 0.00 0.00 0.00 2.78
234 235 9.569122 TTCTAGGTAGATAAAAAGTTGCAGTTT 57.431 29.630 0.00 0.00 31.40 2.66
235 236 9.220767 CTTCTAGGTAGATAAAAAGTTGCAGTT 57.779 33.333 0.00 0.00 31.40 3.16
236 237 8.594550 TCTTCTAGGTAGATAAAAAGTTGCAGT 58.405 33.333 0.00 0.00 31.40 4.40
237 238 9.436957 TTCTTCTAGGTAGATAAAAAGTTGCAG 57.563 33.333 0.00 0.00 31.40 4.41
238 239 9.216117 GTTCTTCTAGGTAGATAAAAAGTTGCA 57.784 33.333 0.00 0.00 31.40 4.08
239 240 9.216117 TGTTCTTCTAGGTAGATAAAAAGTTGC 57.784 33.333 0.00 0.00 31.40 4.17
241 242 9.722184 GGTGTTCTTCTAGGTAGATAAAAAGTT 57.278 33.333 0.00 0.00 31.40 2.66
242 243 8.319881 GGGTGTTCTTCTAGGTAGATAAAAAGT 58.680 37.037 0.00 0.00 31.40 2.66
243 244 8.319146 TGGGTGTTCTTCTAGGTAGATAAAAAG 58.681 37.037 0.00 0.00 31.40 2.27
244 245 8.209802 TGGGTGTTCTTCTAGGTAGATAAAAA 57.790 34.615 0.00 0.00 31.40 1.94
245 246 7.801893 TGGGTGTTCTTCTAGGTAGATAAAA 57.198 36.000 0.00 0.00 31.40 1.52
246 247 7.801893 TTGGGTGTTCTTCTAGGTAGATAAA 57.198 36.000 0.00 0.00 31.40 1.40
247 248 7.801893 TTTGGGTGTTCTTCTAGGTAGATAA 57.198 36.000 0.00 0.00 31.40 1.75
248 249 7.989947 ATTTGGGTGTTCTTCTAGGTAGATA 57.010 36.000 0.00 0.00 31.40 1.98
249 250 6.893020 ATTTGGGTGTTCTTCTAGGTAGAT 57.107 37.500 0.00 0.00 31.40 1.98
250 251 6.697641 AATTTGGGTGTTCTTCTAGGTAGA 57.302 37.500 0.00 0.00 0.00 2.59
251 252 9.462606 AAATAATTTGGGTGTTCTTCTAGGTAG 57.537 33.333 0.00 0.00 0.00 3.18
252 253 9.457436 GAAATAATTTGGGTGTTCTTCTAGGTA 57.543 33.333 0.00 0.00 0.00 3.08
253 254 8.170730 AGAAATAATTTGGGTGTTCTTCTAGGT 58.829 33.333 0.00 0.00 0.00 3.08
254 255 8.581253 AGAAATAATTTGGGTGTTCTTCTAGG 57.419 34.615 0.00 0.00 0.00 3.02
255 256 9.846248 CAAGAAATAATTTGGGTGTTCTTCTAG 57.154 33.333 0.00 0.00 34.06 2.43
256 257 9.581289 TCAAGAAATAATTTGGGTGTTCTTCTA 57.419 29.630 0.00 0.00 34.06 2.10
257 258 8.360390 GTCAAGAAATAATTTGGGTGTTCTTCT 58.640 33.333 0.00 0.00 34.06 2.85
258 259 8.141268 TGTCAAGAAATAATTTGGGTGTTCTTC 58.859 33.333 0.00 0.00 34.06 2.87
259 260 8.017418 TGTCAAGAAATAATTTGGGTGTTCTT 57.983 30.769 0.00 0.00 36.11 2.52
260 261 7.595819 TGTCAAGAAATAATTTGGGTGTTCT 57.404 32.000 0.00 0.00 0.00 3.01
261 262 8.655651 TTTGTCAAGAAATAATTTGGGTGTTC 57.344 30.769 0.00 0.00 0.00 3.18
262 263 8.888716 GTTTTGTCAAGAAATAATTTGGGTGTT 58.111 29.630 0.00 0.00 0.00 3.32
263 264 8.264347 AGTTTTGTCAAGAAATAATTTGGGTGT 58.736 29.630 0.00 0.00 0.00 4.16
264 265 8.661352 AGTTTTGTCAAGAAATAATTTGGGTG 57.339 30.769 0.00 0.00 0.00 4.61
265 266 9.325198 GAAGTTTTGTCAAGAAATAATTTGGGT 57.675 29.630 0.00 0.00 0.00 4.51
266 267 9.323985 TGAAGTTTTGTCAAGAAATAATTTGGG 57.676 29.630 0.00 0.00 0.00 4.12
270 271 9.868277 TGTGTGAAGTTTTGTCAAGAAATAATT 57.132 25.926 0.00 0.00 0.00 1.40
274 275 9.520204 CTTATGTGTGAAGTTTTGTCAAGAAAT 57.480 29.630 0.00 0.00 0.00 2.17
275 276 8.519526 ACTTATGTGTGAAGTTTTGTCAAGAAA 58.480 29.630 0.00 0.00 33.25 2.52
276 277 8.050778 ACTTATGTGTGAAGTTTTGTCAAGAA 57.949 30.769 0.00 0.00 33.25 2.52
277 278 7.624360 ACTTATGTGTGAAGTTTTGTCAAGA 57.376 32.000 0.00 0.00 33.25 3.02
278 279 8.826710 TCTACTTATGTGTGAAGTTTTGTCAAG 58.173 33.333 0.00 0.00 38.16 3.02
279 280 8.725405 TCTACTTATGTGTGAAGTTTTGTCAA 57.275 30.769 0.00 0.00 38.16 3.18
280 281 8.609176 GTTCTACTTATGTGTGAAGTTTTGTCA 58.391 33.333 0.00 0.00 38.16 3.58
281 282 8.609176 TGTTCTACTTATGTGTGAAGTTTTGTC 58.391 33.333 0.00 0.00 38.16 3.18
282 283 8.395633 GTGTTCTACTTATGTGTGAAGTTTTGT 58.604 33.333 0.00 0.00 38.16 2.83
283 284 7.855904 GGTGTTCTACTTATGTGTGAAGTTTTG 59.144 37.037 0.00 0.00 38.16 2.44
284 285 7.012989 GGGTGTTCTACTTATGTGTGAAGTTTT 59.987 37.037 0.00 0.00 38.16 2.43
285 286 6.485648 GGGTGTTCTACTTATGTGTGAAGTTT 59.514 38.462 0.00 0.00 38.16 2.66
286 287 5.995897 GGGTGTTCTACTTATGTGTGAAGTT 59.004 40.000 0.00 0.00 38.16 2.66
287 288 5.071250 TGGGTGTTCTACTTATGTGTGAAGT 59.929 40.000 0.00 0.00 40.27 3.01
288 289 5.547465 TGGGTGTTCTACTTATGTGTGAAG 58.453 41.667 0.00 0.00 0.00 3.02
289 290 5.554437 TGGGTGTTCTACTTATGTGTGAA 57.446 39.130 0.00 0.00 0.00 3.18
290 291 5.302360 GTTGGGTGTTCTACTTATGTGTGA 58.698 41.667 0.00 0.00 0.00 3.58
291 292 4.454504 GGTTGGGTGTTCTACTTATGTGTG 59.545 45.833 0.00 0.00 0.00 3.82
292 293 4.103469 TGGTTGGGTGTTCTACTTATGTGT 59.897 41.667 0.00 0.00 0.00 3.72
293 294 4.647611 TGGTTGGGTGTTCTACTTATGTG 58.352 43.478 0.00 0.00 0.00 3.21
294 295 4.986054 TGGTTGGGTGTTCTACTTATGT 57.014 40.909 0.00 0.00 0.00 2.29
295 296 5.496556 TCATGGTTGGGTGTTCTACTTATG 58.503 41.667 0.00 0.00 0.00 1.90
296 297 5.772393 TCATGGTTGGGTGTTCTACTTAT 57.228 39.130 0.00 0.00 0.00 1.73
297 298 5.249622 TGATCATGGTTGGGTGTTCTACTTA 59.750 40.000 0.00 0.00 0.00 2.24
298 299 4.042809 TGATCATGGTTGGGTGTTCTACTT 59.957 41.667 0.00 0.00 0.00 2.24
299 300 3.587061 TGATCATGGTTGGGTGTTCTACT 59.413 43.478 0.00 0.00 0.00 2.57
300 301 3.950397 TGATCATGGTTGGGTGTTCTAC 58.050 45.455 0.00 0.00 0.00 2.59
301 302 4.227073 TGATGATCATGGTTGGGTGTTCTA 59.773 41.667 14.30 0.00 0.00 2.10
302 303 3.010472 TGATGATCATGGTTGGGTGTTCT 59.990 43.478 14.30 0.00 0.00 3.01
303 304 3.129287 GTGATGATCATGGTTGGGTGTTC 59.871 47.826 14.30 0.00 0.00 3.18
304 305 3.091545 GTGATGATCATGGTTGGGTGTT 58.908 45.455 14.30 0.00 0.00 3.32
305 306 2.726821 GTGATGATCATGGTTGGGTGT 58.273 47.619 14.30 0.00 0.00 4.16
306 307 1.672363 CGTGATGATCATGGTTGGGTG 59.328 52.381 14.30 0.00 29.96 4.61
307 308 1.559219 TCGTGATGATCATGGTTGGGT 59.441 47.619 14.30 0.00 34.27 4.51
308 309 2.330440 TCGTGATGATCATGGTTGGG 57.670 50.000 14.30 0.00 34.27 4.12
309 310 3.065786 CCTTTCGTGATGATCATGGTTGG 59.934 47.826 14.30 9.71 34.27 3.77
310 311 3.065786 CCCTTTCGTGATGATCATGGTTG 59.934 47.826 14.30 0.18 34.27 3.77
311 312 3.282021 CCCTTTCGTGATGATCATGGTT 58.718 45.455 14.30 0.00 34.27 3.67
312 313 2.239654 ACCCTTTCGTGATGATCATGGT 59.760 45.455 14.30 8.57 34.27 3.55
313 314 2.923121 ACCCTTTCGTGATGATCATGG 58.077 47.619 14.30 7.89 34.27 3.66
314 315 4.395854 TGAAACCCTTTCGTGATGATCATG 59.604 41.667 14.30 8.33 42.55 3.07
315 316 4.588899 TGAAACCCTTTCGTGATGATCAT 58.411 39.130 8.25 8.25 42.55 2.45
316 317 4.014569 TGAAACCCTTTCGTGATGATCA 57.985 40.909 0.00 0.00 42.55 2.92
317 318 6.677781 TTATGAAACCCTTTCGTGATGATC 57.322 37.500 0.56 0.00 42.55 2.92
318 319 7.122650 ACAATTATGAAACCCTTTCGTGATGAT 59.877 33.333 0.56 0.00 42.55 2.45
319 320 6.432783 ACAATTATGAAACCCTTTCGTGATGA 59.567 34.615 0.56 0.00 42.55 2.92
320 321 6.620678 ACAATTATGAAACCCTTTCGTGATG 58.379 36.000 0.56 0.59 42.55 3.07
321 322 6.834168 ACAATTATGAAACCCTTTCGTGAT 57.166 33.333 0.56 0.00 42.55 3.06
322 323 6.642707 AACAATTATGAAACCCTTTCGTGA 57.357 33.333 0.56 0.00 42.55 4.35
323 324 6.145371 CCAAACAATTATGAAACCCTTTCGTG 59.855 38.462 0.56 0.00 42.55 4.35
324 325 6.041069 TCCAAACAATTATGAAACCCTTTCGT 59.959 34.615 0.00 0.00 42.55 3.85
325 326 6.451393 TCCAAACAATTATGAAACCCTTTCG 58.549 36.000 0.00 0.00 42.55 3.46
326 327 8.846943 AATCCAAACAATTATGAAACCCTTTC 57.153 30.769 0.00 0.00 40.08 2.62
327 328 9.283768 GAAATCCAAACAATTATGAAACCCTTT 57.716 29.630 0.00 0.00 0.00 3.11
328 329 8.659527 AGAAATCCAAACAATTATGAAACCCTT 58.340 29.630 0.00 0.00 0.00 3.95
329 330 8.206126 AGAAATCCAAACAATTATGAAACCCT 57.794 30.769 0.00 0.00 0.00 4.34
330 331 8.846943 AAGAAATCCAAACAATTATGAAACCC 57.153 30.769 0.00 0.00 0.00 4.11
366 367 9.877137 GTGCATCGTATACATCATTTCAATTTA 57.123 29.630 3.32 0.00 0.00 1.40
367 368 7.862372 GGTGCATCGTATACATCATTTCAATTT 59.138 33.333 3.32 0.00 0.00 1.82
368 369 7.229306 AGGTGCATCGTATACATCATTTCAATT 59.771 33.333 3.32 0.00 0.00 2.32
369 370 6.712095 AGGTGCATCGTATACATCATTTCAAT 59.288 34.615 3.32 0.00 0.00 2.57
370 371 6.018016 CAGGTGCATCGTATACATCATTTCAA 60.018 38.462 3.32 0.00 0.00 2.69
371 372 5.466393 CAGGTGCATCGTATACATCATTTCA 59.534 40.000 3.32 0.00 0.00 2.69
372 373 5.696270 TCAGGTGCATCGTATACATCATTTC 59.304 40.000 3.32 0.00 0.00 2.17
373 374 5.610398 TCAGGTGCATCGTATACATCATTT 58.390 37.500 3.32 0.00 0.00 2.32
374 375 5.213891 TCAGGTGCATCGTATACATCATT 57.786 39.130 3.32 0.00 0.00 2.57
375 376 4.871933 TCAGGTGCATCGTATACATCAT 57.128 40.909 3.32 0.00 0.00 2.45
376 377 4.099419 AGTTCAGGTGCATCGTATACATCA 59.901 41.667 3.32 0.00 0.00 3.07
377 378 4.621991 AGTTCAGGTGCATCGTATACATC 58.378 43.478 3.32 0.00 0.00 3.06
378 379 4.672587 AGTTCAGGTGCATCGTATACAT 57.327 40.909 3.32 0.00 0.00 2.29
379 380 4.643334 ACTAGTTCAGGTGCATCGTATACA 59.357 41.667 3.32 0.00 0.00 2.29
380 381 4.976731 CACTAGTTCAGGTGCATCGTATAC 59.023 45.833 0.00 0.00 0.00 1.47
381 382 4.885325 TCACTAGTTCAGGTGCATCGTATA 59.115 41.667 0.00 0.00 33.91 1.47
382 383 3.699538 TCACTAGTTCAGGTGCATCGTAT 59.300 43.478 0.00 0.00 33.91 3.06
383 384 3.086282 TCACTAGTTCAGGTGCATCGTA 58.914 45.455 0.00 0.00 33.91 3.43
384 385 1.893137 TCACTAGTTCAGGTGCATCGT 59.107 47.619 0.00 0.00 33.91 3.73
385 386 2.654749 TCACTAGTTCAGGTGCATCG 57.345 50.000 0.00 0.00 33.91 3.84
386 387 6.985188 TTAATTCACTAGTTCAGGTGCATC 57.015 37.500 0.00 0.00 33.91 3.91
433 434 2.289320 ACTGCATTAATGGCCGCAAAAA 60.289 40.909 17.02 0.00 33.21 1.94
434 435 1.274728 ACTGCATTAATGGCCGCAAAA 59.725 42.857 17.02 0.00 33.21 2.44
435 436 0.894141 ACTGCATTAATGGCCGCAAA 59.106 45.000 17.02 0.00 33.21 3.68
436 437 1.756430 TACTGCATTAATGGCCGCAA 58.244 45.000 17.02 0.00 33.21 4.85
437 438 1.608109 CATACTGCATTAATGGCCGCA 59.392 47.619 17.02 7.69 0.00 5.69
438 439 1.666888 GCATACTGCATTAATGGCCGC 60.667 52.381 17.02 3.17 44.26 6.53
439 440 2.336554 GCATACTGCATTAATGGCCG 57.663 50.000 17.02 8.28 44.26 6.13
450 451 4.573201 TGTTTAATTCCTACGGCATACTGC 59.427 41.667 0.00 0.00 44.08 4.40
451 452 6.260050 ACATGTTTAATTCCTACGGCATACTG 59.740 38.462 0.00 0.00 0.00 2.74
452 453 6.354130 ACATGTTTAATTCCTACGGCATACT 58.646 36.000 0.00 0.00 0.00 2.12
453 454 6.613755 ACATGTTTAATTCCTACGGCATAC 57.386 37.500 0.00 0.00 0.00 2.39
454 455 8.911918 AATACATGTTTAATTCCTACGGCATA 57.088 30.769 2.30 0.00 0.00 3.14
455 456 7.817418 AATACATGTTTAATTCCTACGGCAT 57.183 32.000 2.30 0.00 0.00 4.40
456 457 7.633193 AAATACATGTTTAATTCCTACGGCA 57.367 32.000 2.30 0.00 0.00 5.69
457 458 9.048446 TCTAAATACATGTTTAATTCCTACGGC 57.952 33.333 2.30 0.00 0.00 5.68
493 494 9.219603 GGCACTCTCAATGCATTACTATATTAA 57.780 33.333 12.53 0.00 45.27 1.40
494 495 8.374743 TGGCACTCTCAATGCATTACTATATTA 58.625 33.333 12.53 0.00 45.27 0.98
495 496 7.226441 TGGCACTCTCAATGCATTACTATATT 58.774 34.615 12.53 0.00 45.27 1.28
496 497 6.772605 TGGCACTCTCAATGCATTACTATAT 58.227 36.000 12.53 0.00 45.27 0.86
497 498 6.173427 TGGCACTCTCAATGCATTACTATA 57.827 37.500 12.53 0.00 45.27 1.31
498 499 5.039920 TGGCACTCTCAATGCATTACTAT 57.960 39.130 12.53 0.00 45.27 2.12
499 500 4.486125 TGGCACTCTCAATGCATTACTA 57.514 40.909 12.53 0.00 45.27 1.82
500 501 3.354948 TGGCACTCTCAATGCATTACT 57.645 42.857 12.53 0.00 45.27 2.24
501 502 3.628942 TCATGGCACTCTCAATGCATTAC 59.371 43.478 12.53 0.00 45.27 1.89
502 503 3.888583 TCATGGCACTCTCAATGCATTA 58.111 40.909 12.53 0.00 45.27 1.90
503 504 2.730382 TCATGGCACTCTCAATGCATT 58.270 42.857 5.99 5.99 45.27 3.56
504 505 2.430248 TCATGGCACTCTCAATGCAT 57.570 45.000 0.00 0.00 45.27 3.96
505 506 2.021457 CATCATGGCACTCTCAATGCA 58.979 47.619 0.00 0.00 45.27 3.96
506 507 1.337071 CCATCATGGCACTCTCAATGC 59.663 52.381 0.00 0.00 42.62 3.56
518 519 2.093394 TGCTCCATTTTTGCCATCATGG 60.093 45.455 0.00 0.00 41.55 3.66
519 520 3.254470 TGCTCCATTTTTGCCATCATG 57.746 42.857 0.00 0.00 0.00 3.07
520 521 5.542635 AGATATGCTCCATTTTTGCCATCAT 59.457 36.000 0.00 0.00 0.00 2.45
521 522 4.897076 AGATATGCTCCATTTTTGCCATCA 59.103 37.500 0.00 0.00 0.00 3.07
522 523 5.464030 AGATATGCTCCATTTTTGCCATC 57.536 39.130 0.00 0.00 0.00 3.51
523 524 5.881923 AAGATATGCTCCATTTTTGCCAT 57.118 34.783 0.00 0.00 0.00 4.40
524 525 5.680594 AAAGATATGCTCCATTTTTGCCA 57.319 34.783 0.00 0.00 0.00 4.92
525 526 6.108015 TGAAAAGATATGCTCCATTTTTGCC 58.892 36.000 0.00 0.00 0.00 4.52
526 527 7.599630 TTGAAAAGATATGCTCCATTTTTGC 57.400 32.000 0.00 0.00 0.00 3.68
527 528 8.991026 TGTTTGAAAAGATATGCTCCATTTTTG 58.009 29.630 0.00 0.00 0.00 2.44
528 529 9.729281 ATGTTTGAAAAGATATGCTCCATTTTT 57.271 25.926 0.00 0.00 0.00 1.94
529 530 9.158233 CATGTTTGAAAAGATATGCTCCATTTT 57.842 29.630 0.00 0.00 0.00 1.82
530 531 8.533657 TCATGTTTGAAAAGATATGCTCCATTT 58.466 29.630 0.00 0.00 0.00 2.32
531 532 7.977853 GTCATGTTTGAAAAGATATGCTCCATT 59.022 33.333 0.00 0.00 32.48 3.16
532 533 7.123098 TGTCATGTTTGAAAAGATATGCTCCAT 59.877 33.333 0.00 0.00 32.48 3.41
533 534 6.433716 TGTCATGTTTGAAAAGATATGCTCCA 59.566 34.615 0.00 0.00 32.48 3.86
534 535 6.855836 TGTCATGTTTGAAAAGATATGCTCC 58.144 36.000 0.00 0.00 32.48 4.70
535 536 8.746922 TTTGTCATGTTTGAAAAGATATGCTC 57.253 30.769 0.00 0.00 30.73 4.26
536 537 9.715121 ATTTTGTCATGTTTGAAAAGATATGCT 57.285 25.926 0.00 0.00 30.73 3.79
559 560 9.836864 GAGGGGCAATAATATCAAAGAAAATTT 57.163 29.630 0.00 0.00 0.00 1.82
560 561 8.432013 GGAGGGGCAATAATATCAAAGAAAATT 58.568 33.333 0.00 0.00 0.00 1.82
561 562 7.568366 TGGAGGGGCAATAATATCAAAGAAAAT 59.432 33.333 0.00 0.00 0.00 1.82
562 563 6.900186 TGGAGGGGCAATAATATCAAAGAAAA 59.100 34.615 0.00 0.00 0.00 2.29
563 564 6.439487 TGGAGGGGCAATAATATCAAAGAAA 58.561 36.000 0.00 0.00 0.00 2.52
564 565 6.024563 TGGAGGGGCAATAATATCAAAGAA 57.975 37.500 0.00 0.00 0.00 2.52
565 566 5.661503 TGGAGGGGCAATAATATCAAAGA 57.338 39.130 0.00 0.00 0.00 2.52
566 567 6.494491 TGAATGGAGGGGCAATAATATCAAAG 59.506 38.462 0.00 0.00 0.00 2.77
567 568 6.380414 TGAATGGAGGGGCAATAATATCAAA 58.620 36.000 0.00 0.00 0.00 2.69
568 569 5.963092 TGAATGGAGGGGCAATAATATCAA 58.037 37.500 0.00 0.00 0.00 2.57
569 570 5.597430 TGAATGGAGGGGCAATAATATCA 57.403 39.130 0.00 0.00 0.00 2.15
570 571 5.185828 GGTTGAATGGAGGGGCAATAATATC 59.814 44.000 0.00 0.00 0.00 1.63
571 572 5.086621 GGTTGAATGGAGGGGCAATAATAT 58.913 41.667 0.00 0.00 0.00 1.28
572 573 4.479158 GGTTGAATGGAGGGGCAATAATA 58.521 43.478 0.00 0.00 0.00 0.98
573 574 3.308401 GGTTGAATGGAGGGGCAATAAT 58.692 45.455 0.00 0.00 0.00 1.28
574 575 2.625617 GGGTTGAATGGAGGGGCAATAA 60.626 50.000 0.00 0.00 0.00 1.40
575 576 1.063266 GGGTTGAATGGAGGGGCAATA 60.063 52.381 0.00 0.00 0.00 1.90
576 577 0.325577 GGGTTGAATGGAGGGGCAAT 60.326 55.000 0.00 0.00 0.00 3.56
577 578 1.078347 GGGTTGAATGGAGGGGCAA 59.922 57.895 0.00 0.00 0.00 4.52
578 579 2.770130 GGGTTGAATGGAGGGGCA 59.230 61.111 0.00 0.00 0.00 5.36
579 580 2.440247 CGGGTTGAATGGAGGGGC 60.440 66.667 0.00 0.00 0.00 5.80
580 581 2.275418 CCGGGTTGAATGGAGGGG 59.725 66.667 0.00 0.00 0.00 4.79
581 582 2.275418 CCCGGGTTGAATGGAGGG 59.725 66.667 14.18 0.00 0.00 4.30
582 583 1.378514 CACCCGGGTTGAATGGAGG 60.379 63.158 27.83 5.19 0.00 4.30
583 584 2.046285 GCACCCGGGTTGAATGGAG 61.046 63.158 27.83 11.68 0.00 3.86
584 585 2.034999 GCACCCGGGTTGAATGGA 59.965 61.111 27.83 0.00 0.00 3.41
585 586 2.282816 TGCACCCGGGTTGAATGG 60.283 61.111 27.83 13.42 0.00 3.16
586 587 2.635443 GGTGCACCCGGGTTGAATG 61.635 63.158 27.83 14.35 0.00 2.67
587 588 2.282887 GGTGCACCCGGGTTGAAT 60.283 61.111 27.83 0.00 0.00 2.57
588 589 1.780107 TATGGTGCACCCGGGTTGAA 61.780 55.000 32.62 11.98 35.15 2.69
589 590 1.567208 ATATGGTGCACCCGGGTTGA 61.567 55.000 32.62 10.95 35.15 3.18
590 591 1.077068 ATATGGTGCACCCGGGTTG 60.077 57.895 32.62 20.66 35.15 3.77
591 592 1.077068 CATATGGTGCACCCGGGTT 60.077 57.895 32.62 11.63 35.15 4.11
592 593 1.858739 AACATATGGTGCACCCGGGT 61.859 55.000 32.62 24.16 35.15 5.28
593 594 1.077068 AACATATGGTGCACCCGGG 60.077 57.895 32.62 22.25 35.15 5.73
594 595 2.105984 CAACATATGGTGCACCCGG 58.894 57.895 32.62 20.34 35.15 5.73
602 603 9.170734 GTGATAATGATATCAGCAACATATGGT 57.829 33.333 11.78 0.00 46.53 3.55
603 604 9.169592 TGTGATAATGATATCAGCAACATATGG 57.830 33.333 11.78 0.00 46.53 2.74
604 605 9.983804 GTGTGATAATGATATCAGCAACATATG 57.016 33.333 11.78 0.00 46.53 1.78
605 606 9.729281 TGTGTGATAATGATATCAGCAACATAT 57.271 29.630 11.78 3.27 46.53 1.78
606 607 8.992073 GTGTGTGATAATGATATCAGCAACATA 58.008 33.333 11.78 6.81 46.53 2.29
607 608 7.499895 TGTGTGTGATAATGATATCAGCAACAT 59.500 33.333 11.78 0.00 46.53 2.71
608 609 6.822676 TGTGTGTGATAATGATATCAGCAACA 59.177 34.615 11.78 8.18 46.53 3.33
609 610 7.250445 TGTGTGTGATAATGATATCAGCAAC 57.750 36.000 11.78 5.85 46.53 4.17
610 611 9.729281 ATATGTGTGTGATAATGATATCAGCAA 57.271 29.630 11.78 0.00 46.53 3.91
611 612 9.158233 CATATGTGTGTGATAATGATATCAGCA 57.842 33.333 11.78 4.18 46.53 4.41
612 613 9.374838 TCATATGTGTGTGATAATGATATCAGC 57.625 33.333 11.78 1.63 46.53 4.26
616 617 9.170734 GCCTTCATATGTGTGTGATAATGATAT 57.829 33.333 1.90 0.00 0.00 1.63
617 618 7.331687 CGCCTTCATATGTGTGTGATAATGATA 59.668 37.037 1.90 0.00 0.00 2.15
618 619 6.148315 CGCCTTCATATGTGTGTGATAATGAT 59.852 38.462 1.90 0.00 0.00 2.45
619 620 5.466393 CGCCTTCATATGTGTGTGATAATGA 59.534 40.000 1.90 0.00 0.00 2.57
620 621 5.237127 ACGCCTTCATATGTGTGTGATAATG 59.763 40.000 1.90 0.00 0.00 1.90
621 622 5.368145 ACGCCTTCATATGTGTGTGATAAT 58.632 37.500 1.90 0.00 0.00 1.28
622 623 4.765273 ACGCCTTCATATGTGTGTGATAA 58.235 39.130 1.90 0.00 0.00 1.75
637 638 6.278363 TCCAGTAAAATGATACTACGCCTTC 58.722 40.000 0.00 0.00 34.40 3.46
638 639 6.229936 TCCAGTAAAATGATACTACGCCTT 57.770 37.500 0.00 0.00 34.40 4.35
676 677 1.289530 TGTGGGGGTGGTTCTCTTTTT 59.710 47.619 0.00 0.00 0.00 1.94
677 678 0.930726 TGTGGGGGTGGTTCTCTTTT 59.069 50.000 0.00 0.00 0.00 2.27
678 679 0.930726 TTGTGGGGGTGGTTCTCTTT 59.069 50.000 0.00 0.00 0.00 2.52
679 680 0.930726 TTTGTGGGGGTGGTTCTCTT 59.069 50.000 0.00 0.00 0.00 2.85
680 681 0.930726 TTTTGTGGGGGTGGTTCTCT 59.069 50.000 0.00 0.00 0.00 3.10
681 682 1.783071 TTTTTGTGGGGGTGGTTCTC 58.217 50.000 0.00 0.00 0.00 2.87
682 683 2.487746 ATTTTTGTGGGGGTGGTTCT 57.512 45.000 0.00 0.00 0.00 3.01
683 684 4.530553 AGATTATTTTTGTGGGGGTGGTTC 59.469 41.667 0.00 0.00 0.00 3.62
688 689 4.412060 TGGAGATTATTTTTGTGGGGGT 57.588 40.909 0.00 0.00 0.00 4.95
714 715 5.684704 TGACAACTCACTGATCCTTCTTTT 58.315 37.500 0.00 0.00 0.00 2.27
715 716 5.296151 TGACAACTCACTGATCCTTCTTT 57.704 39.130 0.00 0.00 0.00 2.52
716 717 4.963318 TGACAACTCACTGATCCTTCTT 57.037 40.909 0.00 0.00 0.00 2.52
717 718 4.590647 TCTTGACAACTCACTGATCCTTCT 59.409 41.667 0.00 0.00 0.00 2.85
718 719 4.887748 TCTTGACAACTCACTGATCCTTC 58.112 43.478 0.00 0.00 0.00 3.46
719 720 4.590647 TCTCTTGACAACTCACTGATCCTT 59.409 41.667 0.00 0.00 0.00 3.36
720 721 4.155709 TCTCTTGACAACTCACTGATCCT 58.844 43.478 0.00 0.00 0.00 3.24
721 722 4.527509 TCTCTTGACAACTCACTGATCC 57.472 45.455 0.00 0.00 0.00 3.36
722 723 6.703607 TCTTTTCTCTTGACAACTCACTGATC 59.296 38.462 0.00 0.00 0.00 2.92
723 724 6.586344 TCTTTTCTCTTGACAACTCACTGAT 58.414 36.000 0.00 0.00 0.00 2.90
724 725 5.977635 TCTTTTCTCTTGACAACTCACTGA 58.022 37.500 0.00 0.00 0.00 3.41
725 726 6.238320 CCTTCTTTTCTCTTGACAACTCACTG 60.238 42.308 0.00 0.00 0.00 3.66
726 727 5.819901 CCTTCTTTTCTCTTGACAACTCACT 59.180 40.000 0.00 0.00 0.00 3.41
727 728 5.817816 TCCTTCTTTTCTCTTGACAACTCAC 59.182 40.000 0.00 0.00 0.00 3.51
728 729 5.989477 TCCTTCTTTTCTCTTGACAACTCA 58.011 37.500 0.00 0.00 0.00 3.41
729 730 6.708054 TCATCCTTCTTTTCTCTTGACAACTC 59.292 38.462 0.00 0.00 0.00 3.01
730 731 6.595682 TCATCCTTCTTTTCTCTTGACAACT 58.404 36.000 0.00 0.00 0.00 3.16
731 732 6.867662 TCATCCTTCTTTTCTCTTGACAAC 57.132 37.500 0.00 0.00 0.00 3.32
732 733 7.503566 ACATTCATCCTTCTTTTCTCTTGACAA 59.496 33.333 0.00 0.00 0.00 3.18
733 734 7.000472 ACATTCATCCTTCTTTTCTCTTGACA 59.000 34.615 0.00 0.00 0.00 3.58
734 735 7.303998 CACATTCATCCTTCTTTTCTCTTGAC 58.696 38.462 0.00 0.00 0.00 3.18
735 736 6.072286 GCACATTCATCCTTCTTTTCTCTTGA 60.072 38.462 0.00 0.00 0.00 3.02
736 737 6.091437 GCACATTCATCCTTCTTTTCTCTTG 58.909 40.000 0.00 0.00 0.00 3.02
737 738 5.771666 TGCACATTCATCCTTCTTTTCTCTT 59.228 36.000 0.00 0.00 0.00 2.85
738 739 5.319453 TGCACATTCATCCTTCTTTTCTCT 58.681 37.500 0.00 0.00 0.00 3.10
739 740 5.633830 TGCACATTCATCCTTCTTTTCTC 57.366 39.130 0.00 0.00 0.00 2.87
740 741 5.279156 GGTTGCACATTCATCCTTCTTTTCT 60.279 40.000 0.00 0.00 0.00 2.52
741 742 4.925646 GGTTGCACATTCATCCTTCTTTTC 59.074 41.667 0.00 0.00 0.00 2.29
782 784 2.198827 TGGTGTGCCCAAATGAGTAG 57.801 50.000 0.00 0.00 41.50 2.57
823 825 7.819900 GGGTATATATAGAGCTGTTTTGGAGTG 59.180 40.741 6.53 0.00 0.00 3.51
985 988 2.587194 CATCGCCGCCTTCCTCTG 60.587 66.667 0.00 0.00 0.00 3.35
999 1002 2.825836 CGCAGGCTGTTCCCCATC 60.826 66.667 17.16 0.00 34.51 3.51
1316 1319 0.034059 CTTCGTCTTGGACTGGCACT 59.966 55.000 0.00 0.00 0.00 4.40
1431 1434 2.754658 TCCGACTCCCGCTTCTCC 60.755 66.667 0.00 0.00 36.84 3.71
1537 1540 7.080724 GCAAAAGAAGTGGAAAATCAGTCTAG 58.919 38.462 0.00 0.00 0.00 2.43
1569 1572 0.032403 TCGAAAACGAAGGCGGAAGA 59.968 50.000 0.00 0.00 43.17 2.87
1577 1580 1.993370 AGCGGAAGATCGAAAACGAAG 59.007 47.619 0.00 0.00 0.00 3.79
1635 1638 3.131400 GGAGATTAAGCTTGACGGAGAGT 59.869 47.826 9.86 0.00 0.00 3.24
1666 1670 3.519107 TGAGCATCCTCACACTTTCCATA 59.481 43.478 0.00 0.00 42.98 2.74
1678 1682 3.383825 AGCCAAAATGAATGAGCATCCTC 59.616 43.478 0.00 0.00 38.62 3.71
1766 1770 1.669115 CAACGAGCCCAGTCCACAG 60.669 63.158 0.00 0.00 0.00 3.66
1778 1782 5.539582 TCGGGAATAAACAAATCAACGAG 57.460 39.130 0.00 0.00 0.00 4.18
1818 1822 1.194772 GAGGCAAAACTCCGTTTCGAG 59.805 52.381 0.00 0.00 34.43 4.04
1819 1823 1.223187 GAGGCAAAACTCCGTTTCGA 58.777 50.000 0.00 0.00 34.43 3.71
1820 1824 0.237498 GGAGGCAAAACTCCGTTTCG 59.763 55.000 0.00 0.00 46.81 3.46
1827 1831 5.819825 AATTAATCGAGGAGGCAAAACTC 57.180 39.130 0.00 0.00 36.76 3.01
1867 1871 8.735315 TCGCCTGATTTTCTGTAAATTAATTGA 58.265 29.630 0.39 0.00 36.59 2.57
1870 1874 9.921637 TTTTCGCCTGATTTTCTGTAAATTAAT 57.078 25.926 0.00 0.00 36.59 1.40
1880 1884 7.681939 TGTATTAGTTTTCGCCTGATTTTCT 57.318 32.000 0.00 0.00 0.00 2.52
1886 1890 4.989797 TCGTTTGTATTAGTTTTCGCCTGA 59.010 37.500 0.00 0.00 0.00 3.86
1888 1892 5.616204 GCTTCGTTTGTATTAGTTTTCGCCT 60.616 40.000 0.00 0.00 0.00 5.52
1898 1902 9.244799 CAGATAGTATGTGCTTCGTTTGTATTA 57.755 33.333 0.00 0.00 0.00 0.98
1921 1925 1.942657 GTTTCTTGCAGTGTGAGCAGA 59.057 47.619 0.00 0.00 43.75 4.26
1924 1928 0.312102 GGGTTTCTTGCAGTGTGAGC 59.688 55.000 0.00 0.00 0.00 4.26
1932 1936 1.202952 ACCGTTATGGGGTTTCTTGCA 60.203 47.619 0.00 0.00 44.64 4.08
1946 1950 1.105457 CGGGGTCTCATGTACCGTTA 58.895 55.000 12.02 0.00 39.70 3.18
1950 1954 2.311688 CTGGCGGGGTCTCATGTACC 62.312 65.000 10.44 10.44 36.19 3.34
1952 1956 1.305802 ACTGGCGGGGTCTCATGTA 60.306 57.895 0.00 0.00 0.00 2.29
1958 1962 1.985116 GAAGAGACTGGCGGGGTCT 60.985 63.158 0.00 2.63 45.37 3.85
2034 2038 3.508845 ATGCCTTGTGTCTAGGTGTTT 57.491 42.857 0.00 0.00 35.13 2.83
2077 2093 2.836372 TCTGACTGCTTGATGGATGACT 59.164 45.455 0.00 0.00 0.00 3.41
2152 2168 3.830178 TCTTGACTGGGACGTCAATAAGA 59.170 43.478 18.91 13.76 45.10 2.10
2160 2176 1.407656 TTGCCTCTTGACTGGGACGT 61.408 55.000 0.00 0.00 0.00 4.34
2207 2223 1.810606 CTCGCCAGTGTGGAGACTGT 61.811 60.000 0.00 0.00 41.47 3.55
2237 2253 0.166161 GCTTTCTTCGCGAAGGAACC 59.834 55.000 39.79 28.77 38.88 3.62
2265 2281 4.207891 AGTGTATTGCCACCTACTTCAG 57.792 45.455 0.00 0.00 35.93 3.02
2268 2284 3.686016 CCAAGTGTATTGCCACCTACTT 58.314 45.455 0.00 0.00 35.93 2.24
2281 2297 0.317160 CGACCACTGAGCCAAGTGTA 59.683 55.000 13.65 0.00 45.08 2.90
2313 2329 0.176680 GACCATCGAGCAGGTGATGT 59.823 55.000 11.23 0.00 40.25 3.06
2374 2392 3.021695 CAACCTACCTCTCGGTGTCATA 58.978 50.000 0.00 0.00 45.18 2.15
2417 2435 2.424557 TGTCTCTCGCTCGTCTAAGTT 58.575 47.619 0.00 0.00 0.00 2.66
2505 2523 2.091277 GCGATCTCGATTGCGGATTTAG 59.909 50.000 3.33 0.00 43.02 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.