Multiple sequence alignment - TraesCS1A01G298100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G298100 chr1A 100.000 6689 0 0 1 6689 493210657 493217345 0.000000e+00 12353.0
1 TraesCS1A01G298100 chr1A 95.122 123 3 3 2280 2399 534045510 534045388 2.460000e-44 191.0
2 TraesCS1A01G298100 chr1A 91.603 131 9 1 2289 2417 534535085 534535215 5.330000e-41 180.0
3 TraesCS1A01G298100 chr1A 98.361 61 1 0 508 568 3611997 3611937 2.550000e-19 108.0
4 TraesCS1A01G298100 chr1B 92.223 3536 160 50 2395 5885 530475236 530478701 0.000000e+00 4900.0
5 TraesCS1A01G298100 chr1B 86.138 1652 104 39 618 2186 530473495 530475104 0.000000e+00 1666.0
6 TraesCS1A01G298100 chr1B 89.608 510 32 12 3 501 530472990 530473489 4.400000e-176 628.0
7 TraesCS1A01G298100 chr1B 87.857 280 27 3 6409 6687 530479453 530479726 8.370000e-84 322.0
8 TraesCS1A01G298100 chr1B 91.667 96 6 2 5873 5968 295294541 295294448 1.510000e-26 132.0
9 TraesCS1A01G298100 chr1B 90.625 96 7 2 5873 5968 457941699 457941606 7.040000e-25 126.0
10 TraesCS1A01G298100 chr1B 95.522 67 2 1 508 574 402066581 402066646 9.170000e-19 106.0
11 TraesCS1A01G298100 chr1D 91.351 2590 132 37 2398 4946 392137678 392135140 0.000000e+00 3458.0
12 TraesCS1A01G298100 chr1D 94.070 1113 50 13 568 1665 392139470 392138359 0.000000e+00 1676.0
13 TraesCS1A01G298100 chr1D 88.562 883 45 20 5197 6048 392134661 392133804 0.000000e+00 1020.0
14 TraesCS1A01G298100 chr1D 89.313 524 21 8 1 508 392139967 392139463 5.700000e-175 625.0
15 TraesCS1A01G298100 chr1D 91.262 309 23 1 6381 6689 392133793 392133489 1.040000e-112 418.0
16 TraesCS1A01G298100 chr1D 88.889 243 24 3 1946 2186 392138054 392137813 5.070000e-76 296.0
17 TraesCS1A01G298100 chr1D 91.623 191 9 5 5002 5188 392135040 392134853 2.390000e-64 257.0
18 TraesCS1A01G298100 chr1D 91.579 95 6 1 5874 5968 4916488 4916396 5.440000e-26 130.0
19 TraesCS1A01G298100 chr1D 85.124 121 11 4 2174 2291 392137796 392137680 4.240000e-22 117.0
20 TraesCS1A01G298100 chr1D 100.000 39 0 0 1954 1992 392138161 392138123 9.300000e-09 73.1
21 TraesCS1A01G298100 chr3D 84.483 290 40 5 1294 1582 454695485 454695200 1.420000e-71 281.0
22 TraesCS1A01G298100 chr3A 77.308 520 87 26 1081 1592 596768529 596768033 1.840000e-70 278.0
23 TraesCS1A01G298100 chr3A 96.552 116 4 0 2288 2403 481522203 481522318 6.850000e-45 193.0
24 TraesCS1A01G298100 chr3A 89.623 106 7 4 5874 5978 57262245 57262143 1.510000e-26 132.0
25 TraesCS1A01G298100 chr3A 98.361 61 1 0 508 568 85478676 85478736 2.550000e-19 108.0
26 TraesCS1A01G298100 chr3A 98.361 61 1 0 508 568 85547532 85547592 2.550000e-19 108.0
27 TraesCS1A01G298100 chr3B 77.366 486 90 19 1104 1582 597473302 597472830 3.070000e-68 270.0
28 TraesCS1A01G298100 chr7A 96.694 121 3 1 2286 2406 105138909 105139028 4.090000e-47 200.0
29 TraesCS1A01G298100 chr6B 99.091 110 1 0 2287 2396 646638164 646638273 1.470000e-46 198.0
30 TraesCS1A01G298100 chr6B 98.182 110 2 0 2290 2399 218024956 218024847 6.850000e-45 193.0
31 TraesCS1A01G298100 chr6B 93.333 90 6 0 5882 5971 642350236 642350325 4.210000e-27 134.0
32 TraesCS1A01G298100 chr5A 99.074 108 1 0 2290 2397 95823188 95823081 1.900000e-45 195.0
33 TraesCS1A01G298100 chr4A 99.074 108 1 0 2290 2397 550136387 550136494 1.900000e-45 195.0
34 TraesCS1A01G298100 chr4A 92.969 128 6 3 2271 2396 1725533 1725407 4.120000e-42 183.0
35 TraesCS1A01G298100 chr6A 90.722 97 7 1 5881 5977 502715132 502715226 1.960000e-25 128.0
36 TraesCS1A01G298100 chr5D 90.000 100 8 1 5879 5978 446918168 446918265 1.960000e-25 128.0
37 TraesCS1A01G298100 chr5D 98.361 61 1 0 508 568 354542987 354542927 2.550000e-19 108.0
38 TraesCS1A01G298100 chr7B 87.850 107 10 3 5867 5972 529956399 529956295 9.110000e-24 122.0
39 TraesCS1A01G298100 chr7B 98.361 61 1 0 508 568 692788229 692788169 2.550000e-19 108.0
40 TraesCS1A01G298100 chr5B 97.015 67 2 0 508 574 429781115 429781181 5.480000e-21 113.0
41 TraesCS1A01G298100 chr5B 98.387 62 1 0 508 569 572000616 572000555 7.090000e-20 110.0
42 TraesCS1A01G298100 chr4D 98.361 61 1 0 508 568 7914043 7914103 2.550000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G298100 chr1A 493210657 493217345 6688 False 12353.000000 12353 100.000000 1 6689 1 chr1A.!!$F1 6688
1 TraesCS1A01G298100 chr1B 530472990 530479726 6736 False 1879.000000 4900 88.956500 3 6687 4 chr1B.!!$F2 6684
2 TraesCS1A01G298100 chr1D 392133489 392139967 6478 True 882.233333 3458 91.132667 1 6689 9 chr1D.!!$R2 6688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 504 0.030638 CAAGTTTGGGAGTTGCGTGG 59.969 55.000 0.00 0.00 32.27 4.94 F
1672 1736 0.675633 ATGGTTCACCTGCTTGCAAC 59.324 50.000 0.00 0.00 36.82 4.17 F
1897 1992 1.066002 CCTGAACAACAGTGCCACTTG 59.934 52.381 0.00 0.00 44.40 3.16 F
3123 3317 0.850883 AGGGGATTGGAGGCCTTTCA 60.851 55.000 6.77 6.12 0.00 2.69 F
3698 3896 1.081556 TCGTCGCACCATCGGATTTG 61.082 55.000 0.00 0.00 0.00 2.32 F
5469 5940 0.041238 AGGTCCCTAGCACTAGCACA 59.959 55.000 0.00 0.00 45.49 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 1992 1.143073 ACTCTGGTGGTTCCAACTTCC 59.857 52.381 8.40 0.00 46.59 3.46 R
2906 3098 0.249322 AAAGCAGTTGCAGCAAGCTG 60.249 50.000 19.62 21.58 45.94 4.24 R
3153 3347 0.969409 AAATGAAGCCAGAGCCTGCC 60.969 55.000 0.00 0.00 41.25 4.85 R
4153 4356 0.739813 ATCGCCCTTTCCGTCTTTCG 60.740 55.000 0.00 0.00 39.52 3.46 R
5571 6042 0.670546 GTGGTGTGGTGACCTCATCG 60.671 60.000 9.82 0.00 36.88 3.84 R
6518 7389 0.107897 TATAGGTGGCCAGCAACACG 60.108 55.000 34.87 0.00 38.46 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 90 1.273327 GTGGATTTTGCCCCTGACTTG 59.727 52.381 0.00 0.00 0.00 3.16
188 192 3.425758 GCGATAATTTATTGCGGCTACCC 60.426 47.826 11.87 0.00 35.98 3.69
236 240 2.849294 AAGAGAGGTGAAACAGGAGC 57.151 50.000 0.00 0.00 39.98 4.70
252 272 3.129462 CAGGAGCACACGATCTTTCTCTA 59.871 47.826 0.00 0.00 0.00 2.43
261 281 3.130516 ACGATCTTTCTCTATTGCCACGA 59.869 43.478 0.00 0.00 0.00 4.35
268 288 5.739752 TTCTCTATTGCCACGATGAAATG 57.260 39.130 0.00 0.00 0.00 2.32
272 292 5.639757 TCTATTGCCACGATGAAATGTTTG 58.360 37.500 0.00 0.00 0.00 2.93
276 296 2.926159 GCCACGATGAAATGTTTGGTGG 60.926 50.000 3.05 3.05 44.72 4.61
281 301 2.886862 TGAAATGTTTGGTGGCACAG 57.113 45.000 20.82 0.00 41.80 3.66
282 302 1.411977 TGAAATGTTTGGTGGCACAGG 59.588 47.619 20.82 0.00 41.80 4.00
484 504 0.030638 CAAGTTTGGGAGTTGCGTGG 59.969 55.000 0.00 0.00 32.27 4.94
501 521 2.161030 GTGGTATCTCCGCCCTACTAG 58.839 57.143 0.00 0.00 40.57 2.57
503 523 2.981784 TGGTATCTCCGCCCTACTAGTA 59.018 50.000 1.89 1.89 39.52 1.82
504 524 3.590630 TGGTATCTCCGCCCTACTAGTAT 59.409 47.826 2.33 0.00 39.52 2.12
505 525 4.043812 TGGTATCTCCGCCCTACTAGTATT 59.956 45.833 2.33 0.00 39.52 1.89
506 526 5.015515 GGTATCTCCGCCCTACTAGTATTT 58.984 45.833 2.33 0.00 0.00 1.40
507 527 5.125257 GGTATCTCCGCCCTACTAGTATTTC 59.875 48.000 2.33 0.00 0.00 2.17
508 528 4.174704 TCTCCGCCCTACTAGTATTTCA 57.825 45.455 2.33 0.00 0.00 2.69
509 529 4.539726 TCTCCGCCCTACTAGTATTTCAA 58.460 43.478 2.33 0.00 0.00 2.69
510 530 5.145564 TCTCCGCCCTACTAGTATTTCAAT 58.854 41.667 2.33 0.00 0.00 2.57
511 531 5.601313 TCTCCGCCCTACTAGTATTTCAATT 59.399 40.000 2.33 0.00 0.00 2.32
512 532 5.850614 TCCGCCCTACTAGTATTTCAATTC 58.149 41.667 2.33 0.00 0.00 2.17
513 533 5.601313 TCCGCCCTACTAGTATTTCAATTCT 59.399 40.000 2.33 0.00 0.00 2.40
514 534 5.927115 CCGCCCTACTAGTATTTCAATTCTC 59.073 44.000 2.33 0.00 0.00 2.87
515 535 6.239345 CCGCCCTACTAGTATTTCAATTCTCT 60.239 42.308 2.33 0.00 0.00 3.10
516 536 7.210873 CGCCCTACTAGTATTTCAATTCTCTT 58.789 38.462 2.33 0.00 0.00 2.85
517 537 7.382759 CGCCCTACTAGTATTTCAATTCTCTTC 59.617 40.741 2.33 0.00 0.00 2.87
518 538 8.425703 GCCCTACTAGTATTTCAATTCTCTTCT 58.574 37.037 2.33 0.00 0.00 2.85
519 539 9.757227 CCCTACTAGTATTTCAATTCTCTTCTG 57.243 37.037 2.33 0.00 0.00 3.02
520 540 9.255304 CCTACTAGTATTTCAATTCTCTTCTGC 57.745 37.037 2.33 0.00 0.00 4.26
532 552 9.599866 TCAATTCTCTTCTGCTTAATTAATCGA 57.400 29.630 0.00 0.00 0.00 3.59
535 555 9.770097 ATTCTCTTCTGCTTAATTAATCGATGA 57.230 29.630 0.00 0.00 0.00 2.92
536 556 8.809159 TCTCTTCTGCTTAATTAATCGATGAG 57.191 34.615 18.01 18.01 0.00 2.90
537 557 7.869937 TCTCTTCTGCTTAATTAATCGATGAGG 59.130 37.037 20.48 10.91 0.00 3.86
538 558 6.425114 TCTTCTGCTTAATTAATCGATGAGGC 59.575 38.462 0.00 0.00 0.00 4.70
539 559 5.610398 TCTGCTTAATTAATCGATGAGGCA 58.390 37.500 0.00 1.80 0.00 4.75
540 560 6.054941 TCTGCTTAATTAATCGATGAGGCAA 58.945 36.000 0.00 0.00 0.00 4.52
541 561 6.542005 TCTGCTTAATTAATCGATGAGGCAAA 59.458 34.615 0.00 0.00 0.00 3.68
542 562 7.229306 TCTGCTTAATTAATCGATGAGGCAAAT 59.771 33.333 0.00 0.00 0.00 2.32
543 563 7.362662 TGCTTAATTAATCGATGAGGCAAATC 58.637 34.615 0.00 0.00 0.00 2.17
544 564 7.229306 TGCTTAATTAATCGATGAGGCAAATCT 59.771 33.333 0.00 0.00 0.00 2.40
545 565 8.078596 GCTTAATTAATCGATGAGGCAAATCTT 58.921 33.333 0.00 0.00 0.00 2.40
546 566 9.956720 CTTAATTAATCGATGAGGCAAATCTTT 57.043 29.630 0.00 0.00 0.00 2.52
548 568 8.638685 AATTAATCGATGAGGCAAATCTTTTG 57.361 30.769 0.00 0.00 0.00 2.44
549 569 3.492421 TCGATGAGGCAAATCTTTTGC 57.508 42.857 14.88 14.88 44.22 3.68
556 576 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44
557 577 2.328473 GCAAATCTTTTGCCTCCGTTC 58.672 47.619 12.74 0.00 39.38 3.95
558 578 2.926586 GCAAATCTTTTGCCTCCGTTCC 60.927 50.000 12.74 0.00 39.38 3.62
559 579 2.286365 AATCTTTTGCCTCCGTTCCA 57.714 45.000 0.00 0.00 0.00 3.53
560 580 2.286365 ATCTTTTGCCTCCGTTCCAA 57.714 45.000 0.00 0.00 0.00 3.53
561 581 2.060050 TCTTTTGCCTCCGTTCCAAA 57.940 45.000 0.00 0.00 0.00 3.28
562 582 2.379972 TCTTTTGCCTCCGTTCCAAAA 58.620 42.857 0.00 0.00 37.06 2.44
563 583 2.761208 TCTTTTGCCTCCGTTCCAAAAA 59.239 40.909 0.00 0.00 37.81 1.94
591 611 2.742710 TTCCCTCGTCGTCTTGTGCG 62.743 60.000 0.00 0.00 0.00 5.34
627 647 2.501128 CGTCGATGTGGATGGCCT 59.499 61.111 3.32 0.00 34.31 5.19
648 668 2.094675 GGTGCCAAGCTTACATGATGT 58.905 47.619 2.65 2.65 0.00 3.06
706 726 4.766007 CGTCACAGATTCAACTGAGTTTG 58.234 43.478 0.00 0.00 40.63 2.93
717 737 6.279513 TCAACTGAGTTTGTCACCAAAATT 57.720 33.333 0.00 0.00 41.99 1.82
718 738 6.696411 TCAACTGAGTTTGTCACCAAAATTT 58.304 32.000 0.00 0.00 41.99 1.82
752 774 6.662865 TGCTAGTTTTGATTGAAATCCCAA 57.337 33.333 0.72 0.00 34.50 4.12
761 783 5.878627 TGATTGAAATCCCAAAAATTGCCT 58.121 33.333 0.72 0.00 34.50 4.75
768 790 7.723172 TGAAATCCCAAAAATTGCCTGTAAAAT 59.277 29.630 0.00 0.00 0.00 1.82
770 792 8.791327 AATCCCAAAAATTGCCTGTAAAATAG 57.209 30.769 0.00 0.00 0.00 1.73
794 816 5.631929 GTCCCGCAAGTTAAAACATTTTAGG 59.368 40.000 0.00 0.00 34.45 2.69
802 824 8.813282 CAAGTTAAAACATTTTAGGCGAAAAGT 58.187 29.630 11.11 6.82 40.34 2.66
803 825 8.347729 AGTTAAAACATTTTAGGCGAAAAGTG 57.652 30.769 11.11 9.69 40.34 3.16
815 837 1.665679 CGAAAAGTGCTGCCGACATAT 59.334 47.619 0.00 0.00 0.00 1.78
929 976 6.126739 ACAAAGGGAAGAAGAGTTTCACTAGT 60.127 38.462 0.00 0.00 37.31 2.57
933 980 7.011382 AGGGAAGAAGAGTTTCACTAGTCTAA 58.989 38.462 0.00 0.00 36.56 2.10
1582 1644 1.994467 CAGCTCGACGACTTCATGC 59.006 57.895 0.00 0.00 0.00 4.06
1608 1671 4.715523 TGCGCTGCACCCCCTTAC 62.716 66.667 9.73 0.00 31.71 2.34
1665 1729 3.063997 CGATAAGAACATGGTTCACCTGC 59.936 47.826 11.28 0.00 36.82 4.85
1672 1736 0.675633 ATGGTTCACCTGCTTGCAAC 59.324 50.000 0.00 0.00 36.82 4.17
1700 1764 4.932799 TGTCGAGAAATCGCTGGAATTTTA 59.067 37.500 0.00 0.00 0.00 1.52
1708 1772 6.575162 AATCGCTGGAATTTTAGTTCTGTT 57.425 33.333 0.00 0.00 0.00 3.16
1736 1800 1.530323 GCTTGTTGGACATTACGGGT 58.470 50.000 0.00 0.00 0.00 5.28
1741 1805 4.554960 TGTTGGACATTACGGGTTCATA 57.445 40.909 0.00 0.00 0.00 2.15
1759 1823 8.641541 GGGTTCATATTATGGTTCATTGACATT 58.358 33.333 3.89 0.00 0.00 2.71
1769 1833 7.111247 TGGTTCATTGACATTTCTTTGTCTT 57.889 32.000 6.20 0.00 45.07 3.01
1778 1842 8.327941 TGACATTTCTTTGTCTTAGGAGATTG 57.672 34.615 6.20 0.00 45.07 2.67
1780 1844 6.660949 ACATTTCTTTGTCTTAGGAGATTGGG 59.339 38.462 0.00 0.00 33.70 4.12
1787 1851 1.839994 CTTAGGAGATTGGGGTGCTCA 59.160 52.381 0.00 0.00 0.00 4.26
1870 1946 5.491982 AGAGCTGTGGTTAAGATTGTAAGG 58.508 41.667 0.00 0.00 0.00 2.69
1872 1948 3.128764 GCTGTGGTTAAGATTGTAAGGGC 59.871 47.826 0.00 0.00 0.00 5.19
1895 1990 1.103398 GCCTGAACAACAGTGCCACT 61.103 55.000 0.00 0.00 44.40 4.00
1897 1992 1.066002 CCTGAACAACAGTGCCACTTG 59.934 52.381 0.00 0.00 44.40 3.16
1901 1996 1.392589 ACAACAGTGCCACTTGGAAG 58.607 50.000 0.00 0.00 37.39 3.46
1928 2029 7.350767 GGAACCACCAGAGTCATAGACTGAC 62.351 52.000 4.12 0.00 45.28 3.51
2004 2136 6.173427 AGAGCTTGGGATTTCTCTATCTTC 57.827 41.667 0.00 0.00 34.45 2.87
2049 2181 1.436600 GAGCTGTGGACATGTCTGTG 58.563 55.000 24.50 13.41 35.14 3.66
2097 2229 6.804677 TGCAATGCATTAAATAACTACCAGG 58.195 36.000 12.53 0.00 31.71 4.45
2098 2230 5.691754 GCAATGCATTAAATAACTACCAGGC 59.308 40.000 12.53 2.21 0.00 4.85
2101 2233 7.986085 ATGCATTAAATAACTACCAGGCTAG 57.014 36.000 0.00 0.00 0.00 3.42
2102 2234 6.895782 TGCATTAAATAACTACCAGGCTAGT 58.104 36.000 0.00 0.00 0.00 2.57
2114 2247 2.100418 CCAGGCTAGTACGTTAACCCTC 59.900 54.545 0.00 0.00 0.00 4.30
2119 2252 3.002759 GCTAGTACGTTAACCCTCCTACG 59.997 52.174 0.00 0.00 39.71 3.51
2121 2254 3.421844 AGTACGTTAACCCTCCTACGTT 58.578 45.455 4.41 0.00 43.91 3.99
2128 2261 1.472188 ACCCTCCTACGTTGCTACTC 58.528 55.000 0.00 0.00 0.00 2.59
2138 2271 3.067106 ACGTTGCTACTCTGTTCCATTG 58.933 45.455 0.00 0.00 0.00 2.82
2211 2376 4.141711 GGTGTCCACTTAGATGAATAGGCA 60.142 45.833 0.00 0.00 0.00 4.75
2212 2377 5.428253 GTGTCCACTTAGATGAATAGGCAA 58.572 41.667 0.00 0.00 0.00 4.52
2213 2378 6.058183 GTGTCCACTTAGATGAATAGGCAAT 58.942 40.000 0.00 0.00 0.00 3.56
2216 2381 7.147567 TGTCCACTTAGATGAATAGGCAATGTA 60.148 37.037 0.00 0.00 0.00 2.29
2219 2384 8.099537 CCACTTAGATGAATAGGCAATGTATCT 58.900 37.037 0.00 0.00 0.00 1.98
2232 2397 6.036470 GGCAATGTATCTTTTGCTCCTTAAC 58.964 40.000 7.48 0.00 45.81 2.01
2234 2399 7.260603 GCAATGTATCTTTTGCTCCTTAACAT 58.739 34.615 0.64 0.00 43.75 2.71
2294 2459 7.159322 TGAGTTACATCTCTGTTTCTACTCC 57.841 40.000 0.00 0.00 36.79 3.85
2295 2460 6.153000 TGAGTTACATCTCTGTTTCTACTCCC 59.847 42.308 0.00 0.00 36.79 4.30
2296 2461 6.257586 AGTTACATCTCTGTTTCTACTCCCT 58.742 40.000 0.00 0.00 36.79 4.20
2297 2462 6.378848 AGTTACATCTCTGTTTCTACTCCCTC 59.621 42.308 0.00 0.00 36.79 4.30
2298 2463 4.027437 ACATCTCTGTTTCTACTCCCTCC 58.973 47.826 0.00 0.00 28.70 4.30
2299 2464 2.724454 TCTCTGTTTCTACTCCCTCCG 58.276 52.381 0.00 0.00 0.00 4.63
2300 2465 2.041350 TCTCTGTTTCTACTCCCTCCGT 59.959 50.000 0.00 0.00 0.00 4.69
2301 2466 2.826725 CTCTGTTTCTACTCCCTCCGTT 59.173 50.000 0.00 0.00 0.00 4.44
2302 2467 2.824341 TCTGTTTCTACTCCCTCCGTTC 59.176 50.000 0.00 0.00 0.00 3.95
2303 2468 2.561419 CTGTTTCTACTCCCTCCGTTCA 59.439 50.000 0.00 0.00 0.00 3.18
2304 2469 2.561419 TGTTTCTACTCCCTCCGTTCAG 59.439 50.000 0.00 0.00 0.00 3.02
2305 2470 2.824341 GTTTCTACTCCCTCCGTTCAGA 59.176 50.000 0.00 0.00 0.00 3.27
2306 2471 2.893215 TCTACTCCCTCCGTTCAGAA 57.107 50.000 0.00 0.00 0.00 3.02
2307 2472 3.383698 TCTACTCCCTCCGTTCAGAAT 57.616 47.619 0.00 0.00 0.00 2.40
2308 2473 3.709587 TCTACTCCCTCCGTTCAGAATT 58.290 45.455 0.00 0.00 0.00 2.17
2309 2474 4.863548 TCTACTCCCTCCGTTCAGAATTA 58.136 43.478 0.00 0.00 0.00 1.40
2310 2475 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2311 2476 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2312 2477 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2313 2478 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2314 2479 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2315 2480 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2316 2481 3.612860 CCTCCGTTCAGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2317 2482 2.991190 TCCGTTCAGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2318 2483 2.734606 CCGTTCAGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2319 2484 3.181530 CCGTTCAGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
2320 2485 3.673338 CGTTCAGAATTACTTGTCGCAGA 59.327 43.478 0.00 0.00 0.00 4.26
2321 2486 4.149922 CGTTCAGAATTACTTGTCGCAGAA 59.850 41.667 0.00 0.00 39.69 3.02
2322 2487 5.333035 CGTTCAGAATTACTTGTCGCAGAAA 60.333 40.000 0.00 0.00 39.69 2.52
2323 2488 6.603095 GTTCAGAATTACTTGTCGCAGAAAT 58.397 36.000 0.00 0.00 39.69 2.17
2324 2489 6.169419 TCAGAATTACTTGTCGCAGAAATG 57.831 37.500 0.00 0.00 39.69 2.32
2325 2490 5.122239 TCAGAATTACTTGTCGCAGAAATGG 59.878 40.000 0.00 0.00 39.69 3.16
2326 2491 5.122239 CAGAATTACTTGTCGCAGAAATGGA 59.878 40.000 0.00 0.00 39.69 3.41
2327 2492 5.882557 AGAATTACTTGTCGCAGAAATGGAT 59.117 36.000 0.00 0.00 39.69 3.41
2328 2493 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2329 2494 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2330 2495 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2331 2496 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2332 2497 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2333 2498 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2334 2499 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2335 2500 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2336 2501 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2337 2502 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
2338 2503 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
2339 2504 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
2340 2505 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
2341 2506 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
2342 2507 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
2343 2508 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
2368 2533 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
2369 2534 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
2370 2535 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
2371 2536 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
2372 2537 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
2373 2538 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
2374 2539 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
2375 2540 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
2376 2541 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
2377 2542 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
2378 2543 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
2379 2544 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
2380 2545 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
2381 2546 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
2382 2547 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
2383 2548 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
2384 2549 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
2385 2550 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2386 2551 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2387 2552 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2388 2553 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2389 2554 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2390 2555 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2391 2556 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2392 2557 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2393 2558 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2394 2559 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2395 2560 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2396 2561 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
2412 2577 6.775708 AGGGAGTATTTAACAGTGCAGTTAA 58.224 36.000 7.09 7.09 40.96 2.01
2436 2601 6.247727 TGCAGTGTTTCTATCGCAATTAAA 57.752 33.333 0.00 0.00 0.00 1.52
2462 2627 7.446625 AGTTATAGGATTTCAATGCTGATGGAC 59.553 37.037 3.94 0.00 37.65 4.02
2463 2628 3.972133 AGGATTTCAATGCTGATGGACA 58.028 40.909 0.00 0.00 35.63 4.02
2464 2629 4.543689 AGGATTTCAATGCTGATGGACAT 58.456 39.130 0.00 0.00 35.63 3.06
2466 2631 5.424252 AGGATTTCAATGCTGATGGACATTT 59.576 36.000 0.00 0.00 35.63 2.32
2467 2632 5.751990 GGATTTCAATGCTGATGGACATTTC 59.248 40.000 0.00 0.00 34.32 2.17
2468 2633 5.725325 TTTCAATGCTGATGGACATTTCA 57.275 34.783 0.00 0.00 34.32 2.69
2470 2635 5.509716 TCAATGCTGATGGACATTTCATC 57.490 39.130 0.00 0.00 40.85 2.92
2471 2636 5.198207 TCAATGCTGATGGACATTTCATCT 58.802 37.500 0.00 0.00 41.01 2.90
2472 2637 5.655090 TCAATGCTGATGGACATTTCATCTT 59.345 36.000 0.00 0.00 41.01 2.40
2473 2638 5.769484 ATGCTGATGGACATTTCATCTTC 57.231 39.130 0.00 0.00 41.01 2.87
2474 2639 3.949754 TGCTGATGGACATTTCATCTTCC 59.050 43.478 0.00 0.00 41.01 3.46
2475 2640 4.205587 GCTGATGGACATTTCATCTTCCT 58.794 43.478 0.00 0.00 41.01 3.36
2479 2668 5.884232 TGATGGACATTTCATCTTCCTGAAG 59.116 40.000 0.31 0.31 41.01 3.02
2493 2682 6.644347 TCTTCCTGAAGAATCTGTTATCCAC 58.356 40.000 7.12 0.00 43.79 4.02
2500 2689 8.812513 TGAAGAATCTGTTATCCACAAATGAT 57.187 30.769 0.00 0.00 33.87 2.45
2521 2710 2.084610 TGCATTCTTGAGTGAGACCG 57.915 50.000 0.00 0.00 0.00 4.79
2523 2712 1.941209 GCATTCTTGAGTGAGACCGCA 60.941 52.381 0.00 0.00 0.00 5.69
2582 2771 2.440627 TGTAGGATTGATGGCAGCATCT 59.559 45.455 6.15 7.59 33.01 2.90
2617 2806 2.267006 CACTGGCCATCAGAGCGT 59.733 61.111 5.51 0.00 46.18 5.07
2621 2810 2.268920 GGCCATCAGAGCGTTGGA 59.731 61.111 0.00 0.00 36.69 3.53
2659 2848 8.812329 CCTCTTCTAAATTTCTGTCGTGATAAG 58.188 37.037 0.00 0.00 0.00 1.73
2710 2899 3.960571 ACTGCAGGTGATTGATAGCTTT 58.039 40.909 19.93 0.00 0.00 3.51
2783 2972 7.710676 TTTATTACCAATACCATTGTGCACT 57.289 32.000 19.41 0.00 0.00 4.40
2878 3068 7.144722 TCCATACTTTAGATTGCAGTTGTTG 57.855 36.000 0.00 0.00 0.00 3.33
2914 3106 2.503920 CAGTTTTTCTGCAGCTTGCT 57.496 45.000 9.47 0.23 45.31 3.91
2941 3135 3.643595 TTTAGCAGGCATGGGCGCT 62.644 57.895 7.64 11.97 42.47 5.92
2975 3169 7.441458 ACCTAGACAACTCGGCATAAATTATTC 59.559 37.037 0.00 0.00 32.98 1.75
3004 3198 8.210946 TGAGTCTAATTCCGAAAACCATGATAT 58.789 33.333 0.00 0.00 0.00 1.63
3034 3228 7.044798 TGCATACTGTTATGTTGTGCATACTA 58.955 34.615 0.00 0.00 39.57 1.82
3035 3229 7.011016 TGCATACTGTTATGTTGTGCATACTAC 59.989 37.037 0.00 0.00 39.57 2.73
3099 3293 5.104693 TGAGTAGGTGAAAAGAACTGTCCAA 60.105 40.000 0.00 0.00 0.00 3.53
3123 3317 0.850883 AGGGGATTGGAGGCCTTTCA 60.851 55.000 6.77 6.12 0.00 2.69
3153 3347 3.760580 AGAAAGGAATATGCTCCTCCG 57.239 47.619 0.00 0.00 45.59 4.63
3261 3455 7.255104 GGTCCGAATTCATATTTATCAGCACAA 60.255 37.037 6.22 0.00 0.00 3.33
3267 3461 6.381481 TCATATTTATCAGCACAAGCAAGG 57.619 37.500 0.00 0.00 45.49 3.61
3351 3545 4.269183 CAGGGATACTAATTGTTGTGGCA 58.731 43.478 0.00 0.00 0.00 4.92
3428 3622 6.877611 ATCTAAAAAGTTGCCGAAGAAAGA 57.122 33.333 0.00 0.00 0.00 2.52
3429 3623 6.877611 TCTAAAAAGTTGCCGAAGAAAGAT 57.122 33.333 0.00 0.00 0.00 2.40
3432 3626 5.712152 AAAAGTTGCCGAAGAAAGATCAT 57.288 34.783 0.00 0.00 0.00 2.45
3524 3718 6.296026 TCTTATGGTATTCAGCGGCTAAAAT 58.704 36.000 0.26 8.51 0.00 1.82
3530 3724 2.634982 TCAGCGGCTAAAATTTGCAG 57.365 45.000 0.26 0.41 0.00 4.41
3624 3818 4.956075 CCCCAGGTATTTAATGAAAGCAGT 59.044 41.667 0.00 0.00 0.00 4.40
3627 3821 6.322201 CCCAGGTATTTAATGAAAGCAGTCAT 59.678 38.462 0.00 0.00 40.01 3.06
3640 3834 3.908476 AGCAGTCATGGTCAGATCTCTA 58.092 45.455 0.00 0.00 28.79 2.43
3687 3885 4.336532 AAACATTTCCTTATCGTCGCAC 57.663 40.909 0.00 0.00 0.00 5.34
3688 3886 2.277084 ACATTTCCTTATCGTCGCACC 58.723 47.619 0.00 0.00 0.00 5.01
3691 3889 2.218953 TTCCTTATCGTCGCACCATC 57.781 50.000 0.00 0.00 0.00 3.51
3698 3896 1.081556 TCGTCGCACCATCGGATTTG 61.082 55.000 0.00 0.00 0.00 2.32
3707 3906 5.220777 CGCACCATCGGATTTGTATAGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
3805 4004 6.944862 AGATATTGCAGAACTTCTTTGACCTT 59.055 34.615 0.00 0.00 0.00 3.50
3829 4028 5.888724 TGACAAAAACCCTGTTATGACTGAA 59.111 36.000 0.00 0.00 0.00 3.02
3853 4052 6.113411 ACTAATTCACCGATTCCAAGTAAGG 58.887 40.000 0.00 0.00 0.00 2.69
3880 4080 6.703165 ACTTTTCATTGATTCTGTTTTGCTCC 59.297 34.615 0.00 0.00 0.00 4.70
3881 4081 4.424061 TCATTGATTCTGTTTTGCTCCG 57.576 40.909 0.00 0.00 0.00 4.63
3942 4142 1.815003 GGTGTTGCTGGAAATCCTCTG 59.185 52.381 0.44 0.00 36.82 3.35
3943 4143 2.553028 GGTGTTGCTGGAAATCCTCTGA 60.553 50.000 0.44 0.00 36.82 3.27
3946 4146 3.265221 TGTTGCTGGAAATCCTCTGAGAT 59.735 43.478 6.17 0.00 36.82 2.75
3973 4175 2.658285 GCACATGCTGTTCTTGACTTG 58.342 47.619 0.00 0.00 38.21 3.16
3986 4188 9.787532 CTGTTCTTGACTTGAAAACAGAATAAA 57.212 29.630 7.58 0.00 46.09 1.40
4153 4356 4.458295 TCAACCACTCTACTAGCACAGTAC 59.542 45.833 0.00 0.00 38.80 2.73
4432 4635 2.564947 TGGTTTGAAACTTGCTGGTGTT 59.435 40.909 8.09 0.00 0.00 3.32
4679 4882 8.091449 TGTTTTGTTGTGAAAGTATGAAACCTT 58.909 29.630 0.00 0.00 0.00 3.50
4680 4883 8.379902 GTTTTGTTGTGAAAGTATGAAACCTTG 58.620 33.333 0.00 0.00 0.00 3.61
4711 4914 4.730949 TTACATCTTTCTACCCGAGTGG 57.269 45.455 0.00 0.00 41.37 4.00
4722 4925 1.295423 CCGAGTGGTACCCAAGGTG 59.705 63.158 10.07 0.00 36.19 4.00
4724 4927 1.259609 CGAGTGGTACCCAAGGTGTA 58.740 55.000 10.07 0.00 36.19 2.90
4725 4928 1.829222 CGAGTGGTACCCAAGGTGTAT 59.171 52.381 10.07 0.00 36.19 2.29
4726 4929 3.025978 CGAGTGGTACCCAAGGTGTATA 58.974 50.000 10.07 0.00 36.19 1.47
4727 4930 3.448301 CGAGTGGTACCCAAGGTGTATAA 59.552 47.826 10.07 0.00 36.19 0.98
4728 4931 4.678840 CGAGTGGTACCCAAGGTGTATAAC 60.679 50.000 10.07 0.00 36.19 1.89
4729 4932 4.432316 AGTGGTACCCAAGGTGTATAACT 58.568 43.478 10.07 0.00 36.19 2.24
4819 5022 7.360575 AGTTGCATAAGTAACTAAAGTTCCG 57.639 36.000 0.00 0.00 46.79 4.30
4895 5098 5.126061 TGTTTAAGTCTCGGTATGGGTACTC 59.874 44.000 0.00 0.00 0.00 2.59
4970 5240 0.179215 GCATTTCGAACGTGCTCCAG 60.179 55.000 21.34 0.00 36.02 3.86
4979 5249 3.548014 CGAACGTGCTCCAGTGAAAAATT 60.548 43.478 0.00 0.00 0.00 1.82
4998 5268 8.726870 AAAAATTGATCCATTTCCAGCTTATG 57.273 30.769 5.31 0.00 0.00 1.90
5191 5465 2.639065 GAACACAGGTTGGACACTTCA 58.361 47.619 0.00 0.00 37.36 3.02
5273 5730 6.018994 ACAAACAGAACACTAAAGAGTAAGCG 60.019 38.462 0.00 0.00 33.32 4.68
5307 5765 6.114187 TCCATAACAAGAAAGCTGAGAAGA 57.886 37.500 0.00 0.00 0.00 2.87
5347 5805 3.776417 TGTTGTGAGGAGATCATCATCCA 59.224 43.478 0.01 0.00 40.92 3.41
5398 5856 7.290014 TGGATGGTGCTTCTATGTTATCTTAGA 59.710 37.037 0.00 0.00 0.00 2.10
5418 5876 9.601217 TCTTAGAAAGTAATCTGCATACCTTTC 57.399 33.333 12.70 12.70 0.00 2.62
5459 5920 8.095169 AGCGATATGTTTATTAAAGGTCCCTAG 58.905 37.037 0.00 0.00 0.00 3.02
5469 5940 0.041238 AGGTCCCTAGCACTAGCACA 59.959 55.000 0.00 0.00 45.49 4.57
5643 6120 2.543861 CGATGTACAGAACCCGGATGAG 60.544 54.545 0.73 0.00 0.00 2.90
5676 6153 1.583967 CGCAGACCGATCGAGTGAC 60.584 63.158 18.66 0.05 40.02 3.67
5709 6187 0.179015 TTGGTTGCTTTCCGTGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
5718 6196 0.035739 TTCCGTGGCTACAAAGTCCC 59.964 55.000 0.00 0.00 0.00 4.46
5789 6269 1.654317 GATGCTGAGCCTCACTCTTG 58.346 55.000 0.23 0.00 46.41 3.02
5816 6296 4.323792 CGGCCAGGAATGGACTATTCATAT 60.324 45.833 12.93 0.00 45.70 1.78
5817 6297 4.946157 GGCCAGGAATGGACTATTCATATG 59.054 45.833 12.93 8.25 45.70 1.78
5891 6372 5.597182 ACTCTTGTAGTTTGTACTCACTCCA 59.403 40.000 1.26 0.00 33.35 3.86
5909 6397 8.818141 TCACTCCATAAAGAAATATAAGAGCG 57.182 34.615 0.00 0.00 0.00 5.03
5930 6418 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
5933 6421 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
5965 6453 8.122952 CGCTTTTATATTTCTTTACAGTGGGAG 58.877 37.037 0.00 0.00 0.00 4.30
6014 6502 5.824624 AGTGTCTAGTGGATTAATTGGCATG 59.175 40.000 0.00 0.00 0.00 4.06
6015 6503 5.009010 GTGTCTAGTGGATTAATTGGCATGG 59.991 44.000 0.00 0.00 0.00 3.66
6060 6548 4.327680 AGACTTAAATCTGCTGTGGGAAC 58.672 43.478 0.00 0.00 0.00 3.62
6061 6549 9.840236 TGTAGACTTAAATCTGCTGTGGGAACC 62.840 44.444 3.73 0.00 39.64 3.62
6073 6561 4.337013 GGAACCCACGATTGCCAT 57.663 55.556 0.00 0.00 0.00 4.40
6074 6562 2.106844 GGAACCCACGATTGCCATC 58.893 57.895 0.00 0.00 0.00 3.51
6077 6565 0.033208 AACCCACGATTGCCATCCAT 60.033 50.000 0.00 0.00 0.00 3.41
6078 6566 0.033208 ACCCACGATTGCCATCCATT 60.033 50.000 0.00 0.00 0.00 3.16
6080 6568 2.305928 CCCACGATTGCCATCCATTTA 58.694 47.619 0.00 0.00 0.00 1.40
6081 6569 2.892852 CCCACGATTGCCATCCATTTAT 59.107 45.455 0.00 0.00 0.00 1.40
6083 6571 4.706476 CCCACGATTGCCATCCATTTATAT 59.294 41.667 0.00 0.00 0.00 0.86
6084 6572 5.885352 CCCACGATTGCCATCCATTTATATA 59.115 40.000 0.00 0.00 0.00 0.86
6085 6573 6.547141 CCCACGATTGCCATCCATTTATATAT 59.453 38.462 0.00 0.00 0.00 0.86
6086 6574 7.719193 CCCACGATTGCCATCCATTTATATATA 59.281 37.037 0.00 0.00 0.00 0.86
6087 6575 8.777413 CCACGATTGCCATCCATTTATATATAG 58.223 37.037 0.00 0.00 0.00 1.31
6088 6576 8.285394 CACGATTGCCATCCATTTATATATAGC 58.715 37.037 0.00 0.00 0.00 2.97
6089 6577 7.445402 ACGATTGCCATCCATTTATATATAGCC 59.555 37.037 0.00 0.00 0.00 3.93
6090 6578 7.445096 CGATTGCCATCCATTTATATATAGCCA 59.555 37.037 0.00 0.00 0.00 4.75
6093 6581 6.160282 TGCCATCCATTTATATATAGCCAGGT 59.840 38.462 0.00 0.00 0.00 4.00
6094 6582 7.062957 GCCATCCATTTATATATAGCCAGGTT 58.937 38.462 0.00 0.00 0.00 3.50
6095 6583 7.229506 GCCATCCATTTATATATAGCCAGGTTC 59.770 40.741 0.00 0.00 0.00 3.62
6096 6584 8.274322 CCATCCATTTATATATAGCCAGGTTCA 58.726 37.037 0.00 0.00 0.00 3.18
6097 6585 9.685276 CATCCATTTATATATAGCCAGGTTCAA 57.315 33.333 0.00 0.00 0.00 2.69
6098 6586 9.911788 ATCCATTTATATATAGCCAGGTTCAAG 57.088 33.333 0.00 0.00 0.00 3.02
6099 6587 9.111519 TCCATTTATATATAGCCAGGTTCAAGA 57.888 33.333 0.00 0.00 0.00 3.02
6100 6588 9.167311 CCATTTATATATAGCCAGGTTCAAGAC 57.833 37.037 0.00 0.00 0.00 3.01
6108 6596 7.775053 ATAGCCAGGTTCAAGACAATTAAAA 57.225 32.000 0.00 0.00 0.00 1.52
6109 6597 6.089249 AGCCAGGTTCAAGACAATTAAAAG 57.911 37.500 0.00 0.00 0.00 2.27
6112 6600 6.239036 GCCAGGTTCAAGACAATTAAAAGAGT 60.239 38.462 0.00 0.00 0.00 3.24
6113 6601 7.363431 CCAGGTTCAAGACAATTAAAAGAGTC 58.637 38.462 0.00 0.00 0.00 3.36
6114 6602 7.229506 CCAGGTTCAAGACAATTAAAAGAGTCT 59.770 37.037 0.00 0.00 42.72 3.24
6120 6608 8.345565 TCAAGACAATTAAAAGAGTCTCTTTGC 58.654 33.333 25.09 11.26 45.19 3.68
6121 6609 8.348507 CAAGACAATTAAAAGAGTCTCTTTGCT 58.651 33.333 25.09 14.77 45.19 3.91
6122 6610 9.561069 AAGACAATTAAAAGAGTCTCTTTGCTA 57.439 29.630 25.09 13.86 45.19 3.49
6123 6611 8.994170 AGACAATTAAAAGAGTCTCTTTGCTAC 58.006 33.333 25.09 14.02 45.19 3.58
6124 6612 8.910351 ACAATTAAAAGAGTCTCTTTGCTACT 57.090 30.769 25.09 13.50 45.19 2.57
6133 7001 6.210385 AGAGTCTCTTTGCTACTCTTTGATCA 59.790 38.462 0.00 0.00 45.94 2.92
6134 7002 6.397272 AGTCTCTTTGCTACTCTTTGATCAG 58.603 40.000 0.00 0.00 0.00 2.90
6137 7005 3.701205 TTGCTACTCTTTGATCAGCCA 57.299 42.857 0.00 0.00 0.00 4.75
6142 7010 3.347077 ACTCTTTGATCAGCCAGGAAG 57.653 47.619 0.00 0.00 0.00 3.46
6143 7011 2.026449 ACTCTTTGATCAGCCAGGAAGG 60.026 50.000 0.00 0.00 41.84 3.46
6149 7017 1.414550 GATCAGCCAGGAAGGGACTAC 59.585 57.143 0.00 0.00 38.49 2.73
6153 7021 2.838202 CAGCCAGGAAGGGACTACTTTA 59.162 50.000 0.00 0.00 38.49 1.85
6155 7023 3.712218 AGCCAGGAAGGGACTACTTTATC 59.288 47.826 0.00 0.00 38.49 1.75
6158 7026 4.962995 CCAGGAAGGGACTACTTTATCTGA 59.037 45.833 0.00 0.00 38.49 3.27
6159 7027 5.425539 CCAGGAAGGGACTACTTTATCTGAA 59.574 44.000 0.00 0.00 38.49 3.02
6186 7054 9.979578 AGAAGCATGAATTAGTATAGTTCTCAG 57.020 33.333 0.00 0.00 38.05 3.35
6188 7056 9.757227 AAGCATGAATTAGTATAGTTCTCAGTC 57.243 33.333 0.00 0.00 38.05 3.51
6189 7057 8.918116 AGCATGAATTAGTATAGTTCTCAGTCA 58.082 33.333 0.00 0.00 38.05 3.41
6190 7058 9.190858 GCATGAATTAGTATAGTTCTCAGTCAG 57.809 37.037 0.00 0.00 38.05 3.51
6193 7061 9.462606 TGAATTAGTATAGTTCTCAGTCAGTCA 57.537 33.333 0.00 0.00 38.05 3.41
6208 7076 9.134734 CTCAGTCAGTCATTTTTCTAGAGTAAC 57.865 37.037 0.00 0.00 0.00 2.50
6209 7077 8.638873 TCAGTCAGTCATTTTTCTAGAGTAACA 58.361 33.333 0.00 0.00 0.00 2.41
6210 7078 9.261180 CAGTCAGTCATTTTTCTAGAGTAACAA 57.739 33.333 0.00 0.00 0.00 2.83
6240 7108 8.236084 ACTGCTGTACTTTGTACTTTTATACG 57.764 34.615 8.94 0.00 0.00 3.06
6266 7135 3.175152 CAAGGAGAAGAGAACACGATCG 58.825 50.000 14.88 14.88 0.00 3.69
6269 7138 2.681848 GGAGAAGAGAACACGATCGGTA 59.318 50.000 20.98 0.00 0.00 4.02
6273 7142 4.273969 AGAAGAGAACACGATCGGTATCTC 59.726 45.833 25.86 25.86 39.39 2.75
6282 7151 2.668556 CGATCGGTATCTCGTGGATTGG 60.669 54.545 7.38 0.00 35.98 3.16
6283 7152 0.387929 TCGGTATCTCGTGGATTGGC 59.612 55.000 0.00 0.00 35.98 4.52
6284 7153 0.104120 CGGTATCTCGTGGATTGGCA 59.896 55.000 0.00 0.00 35.98 4.92
6288 7158 3.251004 GGTATCTCGTGGATTGGCAATTC 59.749 47.826 14.93 13.29 35.98 2.17
6294 7164 1.249469 TGGATTGGCAATTCGCAGCA 61.249 50.000 14.93 0.00 45.17 4.41
6312 7182 0.734889 CAGCAATTAAGGGCCGTGAG 59.265 55.000 0.90 0.00 0.00 3.51
6315 7185 1.006832 CAATTAAGGGCCGTGAGTCG 58.993 55.000 0.90 0.00 39.52 4.18
6322 7192 2.251642 GGCCGTGAGTCGCAACTTT 61.252 57.895 4.28 0.00 35.28 2.66
6332 7202 2.160417 AGTCGCAACTTTAATCTGCTGC 59.840 45.455 0.00 0.00 33.82 5.25
6337 7207 4.386652 CGCAACTTTAATCTGCTGCAAATT 59.613 37.500 6.43 6.43 33.82 1.82
6338 7208 5.443693 CGCAACTTTAATCTGCTGCAAATTC 60.444 40.000 4.17 0.00 33.82 2.17
6339 7209 5.406175 GCAACTTTAATCTGCTGCAAATTCA 59.594 36.000 4.17 0.00 33.20 2.57
6340 7210 6.400727 GCAACTTTAATCTGCTGCAAATTCAG 60.401 38.462 4.17 5.51 37.15 3.02
6341 7211 6.579666 ACTTTAATCTGCTGCAAATTCAGA 57.420 33.333 4.17 9.19 40.62 3.27
6342 7212 7.166691 ACTTTAATCTGCTGCAAATTCAGAT 57.833 32.000 4.17 12.07 46.19 2.90
6347 7217 6.770746 ATCTGCTGCAAATTCAGATTAGTT 57.229 33.333 3.02 0.00 42.92 2.24
6348 7218 6.579666 TCTGCTGCAAATTCAGATTAGTTT 57.420 33.333 3.02 0.00 36.19 2.66
6349 7219 6.384224 TCTGCTGCAAATTCAGATTAGTTTG 58.616 36.000 3.02 0.00 36.19 2.93
6350 7220 6.207221 TCTGCTGCAAATTCAGATTAGTTTGA 59.793 34.615 3.02 0.00 36.19 2.69
6351 7221 6.747125 TGCTGCAAATTCAGATTAGTTTGAA 58.253 32.000 0.00 0.00 37.68 2.69
6352 7222 7.208777 TGCTGCAAATTCAGATTAGTTTGAAA 58.791 30.769 0.00 0.00 36.93 2.69
6353 7223 7.874016 TGCTGCAAATTCAGATTAGTTTGAAAT 59.126 29.630 0.00 0.00 36.93 2.17
6354 7224 9.357652 GCTGCAAATTCAGATTAGTTTGAAATA 57.642 29.630 0.00 0.00 36.93 1.40
6373 7243 9.586732 TTGAAATAGTATTGGATGATTAAGGGG 57.413 33.333 0.00 0.00 0.00 4.79
6374 7244 8.732854 TGAAATAGTATTGGATGATTAAGGGGT 58.267 33.333 0.00 0.00 0.00 4.95
6377 7247 9.629649 AATAGTATTGGATGATTAAGGGGTAGA 57.370 33.333 0.00 0.00 0.00 2.59
6378 7248 7.947782 AGTATTGGATGATTAAGGGGTAGAA 57.052 36.000 0.00 0.00 0.00 2.10
6379 7249 8.344939 AGTATTGGATGATTAAGGGGTAGAAA 57.655 34.615 0.00 0.00 0.00 2.52
6407 7277 4.703897 GCATAGGCCTCTACATGTTACAA 58.296 43.478 9.68 0.00 0.00 2.41
6492 7362 2.479275 GGTAAGCAAGTTCGTTCTGGTC 59.521 50.000 0.00 0.00 0.00 4.02
6495 7365 0.250338 GCAAGTTCGTTCTGGTCCCT 60.250 55.000 0.00 0.00 0.00 4.20
6497 7367 1.873591 CAAGTTCGTTCTGGTCCCTTG 59.126 52.381 0.00 0.00 0.00 3.61
6518 7389 2.802247 GAGCCAAGTGACAAATTTTGCC 59.198 45.455 9.04 0.00 0.00 4.52
6557 7428 1.446272 GGGTTCTGGCGAGTTCTCG 60.446 63.158 16.47 16.47 0.00 4.04
6678 7549 4.447138 TCTCTCCCTAGAACTCTCCATC 57.553 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 90 0.030235 GAAAGGTTGTGCCGGTGTTC 59.970 55.000 1.90 0.00 43.70 3.18
236 240 4.033358 GTGGCAATAGAGAAAGATCGTGTG 59.967 45.833 0.00 0.00 0.00 3.82
252 272 3.006752 ACCAAACATTTCATCGTGGCAAT 59.993 39.130 0.00 0.00 0.00 3.56
261 281 2.037511 CCTGTGCCACCAAACATTTCAT 59.962 45.455 0.00 0.00 0.00 2.57
268 288 1.523758 CTACTCCTGTGCCACCAAAC 58.476 55.000 0.00 0.00 0.00 2.93
272 292 0.462759 GATGCTACTCCTGTGCCACC 60.463 60.000 0.00 0.00 0.00 4.61
276 296 0.539051 ACCAGATGCTACTCCTGTGC 59.461 55.000 0.00 0.00 0.00 4.57
281 301 2.113860 TGCAAACCAGATGCTACTCC 57.886 50.000 0.00 0.00 44.14 3.85
282 302 2.286294 CGATGCAAACCAGATGCTACTC 59.714 50.000 0.00 0.00 44.14 2.59
441 461 5.065914 GCAATGGGTATGCAGAGAAGAATA 58.934 41.667 0.00 0.00 43.29 1.75
442 462 3.887716 GCAATGGGTATGCAGAGAAGAAT 59.112 43.478 0.00 0.00 43.29 2.40
484 504 5.709164 TGAAATACTAGTAGGGCGGAGATAC 59.291 44.000 8.85 0.00 0.00 2.24
506 526 9.599866 TCGATTAATTAAGCAGAAGAGAATTGA 57.400 29.630 13.48 0.00 0.00 2.57
509 529 9.770097 TCATCGATTAATTAAGCAGAAGAGAAT 57.230 29.630 13.48 0.00 0.00 2.40
510 530 9.254133 CTCATCGATTAATTAAGCAGAAGAGAA 57.746 33.333 21.80 4.93 30.08 2.87
511 531 7.869937 CCTCATCGATTAATTAAGCAGAAGAGA 59.130 37.037 24.76 12.31 30.08 3.10
512 532 7.359933 GCCTCATCGATTAATTAAGCAGAAGAG 60.360 40.741 20.62 20.62 0.00 2.85
513 533 6.425114 GCCTCATCGATTAATTAAGCAGAAGA 59.575 38.462 13.48 11.65 0.00 2.87
514 534 6.203530 TGCCTCATCGATTAATTAAGCAGAAG 59.796 38.462 13.48 8.59 0.00 2.85
515 535 6.054941 TGCCTCATCGATTAATTAAGCAGAA 58.945 36.000 13.48 0.00 0.00 3.02
516 536 5.610398 TGCCTCATCGATTAATTAAGCAGA 58.390 37.500 13.48 11.16 0.00 4.26
517 537 5.929697 TGCCTCATCGATTAATTAAGCAG 57.070 39.130 13.48 6.62 0.00 4.24
518 538 6.691754 TTTGCCTCATCGATTAATTAAGCA 57.308 33.333 13.48 7.23 0.00 3.91
519 539 7.588512 AGATTTGCCTCATCGATTAATTAAGC 58.411 34.615 3.31 3.31 0.00 3.09
520 540 9.956720 AAAGATTTGCCTCATCGATTAATTAAG 57.043 29.630 3.94 0.00 0.00 1.85
522 542 9.734620 CAAAAGATTTGCCTCATCGATTAATTA 57.265 29.630 0.00 0.00 0.00 1.40
523 543 7.223387 GCAAAAGATTTGCCTCATCGATTAATT 59.777 33.333 15.12 0.00 39.38 1.40
524 544 6.698766 GCAAAAGATTTGCCTCATCGATTAAT 59.301 34.615 15.12 0.00 39.38 1.40
525 545 6.035843 GCAAAAGATTTGCCTCATCGATTAA 58.964 36.000 15.12 0.00 39.38 1.40
526 546 5.581605 GCAAAAGATTTGCCTCATCGATTA 58.418 37.500 15.12 0.00 39.38 1.75
527 547 4.427312 GCAAAAGATTTGCCTCATCGATT 58.573 39.130 15.12 0.00 39.38 3.34
528 548 4.037858 GCAAAAGATTTGCCTCATCGAT 57.962 40.909 15.12 0.00 39.38 3.59
529 549 3.492421 GCAAAAGATTTGCCTCATCGA 57.508 42.857 15.12 0.00 39.38 3.59
537 557 2.328473 GAACGGAGGCAAAAGATTTGC 58.672 47.619 17.18 17.18 44.22 3.68
538 558 2.295909 TGGAACGGAGGCAAAAGATTTG 59.704 45.455 0.00 0.00 0.00 2.32
539 559 2.593026 TGGAACGGAGGCAAAAGATTT 58.407 42.857 0.00 0.00 0.00 2.17
540 560 2.286365 TGGAACGGAGGCAAAAGATT 57.714 45.000 0.00 0.00 0.00 2.40
541 561 2.286365 TTGGAACGGAGGCAAAAGAT 57.714 45.000 0.00 0.00 0.00 2.40
542 562 2.060050 TTTGGAACGGAGGCAAAAGA 57.940 45.000 0.00 0.00 0.00 2.52
543 563 2.880963 TTTTGGAACGGAGGCAAAAG 57.119 45.000 0.00 0.00 0.00 2.27
563 583 4.891260 AGACGACGAGGGAAATACTTTTT 58.109 39.130 0.00 0.00 0.00 1.94
564 584 4.532314 AGACGACGAGGGAAATACTTTT 57.468 40.909 0.00 0.00 0.00 2.27
565 585 4.243270 CAAGACGACGAGGGAAATACTTT 58.757 43.478 0.00 0.00 0.00 2.66
566 586 3.257624 ACAAGACGACGAGGGAAATACTT 59.742 43.478 0.00 0.00 0.00 2.24
567 587 2.824341 ACAAGACGACGAGGGAAATACT 59.176 45.455 0.00 0.00 0.00 2.12
591 611 1.221414 GCGATTCCTACTGGACATGC 58.779 55.000 0.00 0.00 43.06 4.06
627 647 2.093890 CATCATGTAAGCTTGGCACCA 58.906 47.619 9.86 0.00 0.00 4.17
648 668 0.108585 GGTTGAACACTCCTCAGCCA 59.891 55.000 0.00 0.00 42.17 4.75
683 703 2.408050 ACTCAGTTGAATCTGTGACGC 58.592 47.619 0.00 0.00 36.85 5.19
706 726 8.664798 AGCAAAAAGAACTTAAATTTTGGTGAC 58.335 29.630 12.09 0.00 45.96 3.67
752 774 5.623596 GCGGGACTATTTTACAGGCAATTTT 60.624 40.000 0.00 0.00 0.00 1.82
761 783 7.013083 TGTTTTAACTTGCGGGACTATTTTACA 59.987 33.333 0.00 0.00 0.00 2.41
768 790 6.394025 AAAATGTTTTAACTTGCGGGACTA 57.606 33.333 0.00 0.00 0.00 2.59
770 792 5.631929 CCTAAAATGTTTTAACTTGCGGGAC 59.368 40.000 0.27 0.00 32.73 4.46
794 816 2.127232 GTCGGCAGCACTTTTCGC 60.127 61.111 0.00 0.00 0.00 4.70
802 824 1.832883 AAAACCATATGTCGGCAGCA 58.167 45.000 0.00 0.00 0.00 4.41
803 825 4.568152 AATAAAACCATATGTCGGCAGC 57.432 40.909 0.00 0.00 0.00 5.25
929 976 3.056536 AGCAACGATCTCTTGTGCTTAGA 60.057 43.478 0.00 0.00 0.00 2.10
933 980 1.674221 GGAGCAACGATCTCTTGTGCT 60.674 52.381 0.00 0.00 0.00 4.40
1134 1196 2.683933 AAGTCACGGCGGGAGGAT 60.684 61.111 14.43 0.00 0.00 3.24
1146 1208 1.343478 GGGATGAGGAGGAGGAAGTCA 60.343 57.143 0.00 0.00 0.00 3.41
1513 1575 2.202987 GAGGGACATGCGCCTCTG 60.203 66.667 4.18 2.06 33.59 3.35
1597 1659 4.875561 TTAAAATTGTGTAAGGGGGTGC 57.124 40.909 0.00 0.00 0.00 5.01
1608 1671 8.673711 TCTCCGGATAACTTGATTAAAATTGTG 58.326 33.333 3.57 0.00 0.00 3.33
1759 1823 4.601857 ACCCCAATCTCCTAAGACAAAGAA 59.398 41.667 0.00 0.00 33.32 2.52
1762 1826 3.561313 GCACCCCAATCTCCTAAGACAAA 60.561 47.826 0.00 0.00 33.32 2.83
1769 1833 2.196742 ATGAGCACCCCAATCTCCTA 57.803 50.000 0.00 0.00 0.00 2.94
1778 1842 3.879892 GAGTTCAATTCTATGAGCACCCC 59.120 47.826 0.00 0.00 33.47 4.95
1780 1844 5.423015 TCAGAGTTCAATTCTATGAGCACC 58.577 41.667 0.00 0.00 33.47 5.01
1849 1925 4.589908 CCCTTACAATCTTAACCACAGCT 58.410 43.478 0.00 0.00 0.00 4.24
1850 1926 3.128764 GCCCTTACAATCTTAACCACAGC 59.871 47.826 0.00 0.00 0.00 4.40
1851 1927 3.694566 GGCCCTTACAATCTTAACCACAG 59.305 47.826 0.00 0.00 0.00 3.66
1856 1932 2.688446 GCCTGGCCCTTACAATCTTAAC 59.312 50.000 7.66 0.00 0.00 2.01
1895 1990 1.566703 TCTGGTGGTTCCAACTTCCAA 59.433 47.619 8.40 0.00 46.59 3.53
1897 1992 1.143073 ACTCTGGTGGTTCCAACTTCC 59.857 52.381 8.40 0.00 46.59 3.46
1901 1996 2.568623 ATGACTCTGGTGGTTCCAAC 57.431 50.000 0.00 0.00 46.59 3.77
1940 2041 4.269183 TCTCAAGCACCAGAGTTTGAAAA 58.731 39.130 0.00 0.00 38.08 2.29
2049 2181 4.036734 TGTCTCACAACAAATCAGAAAGGC 59.963 41.667 0.00 0.00 0.00 4.35
2095 2227 2.024560 AGGAGGGTTAACGTACTAGCCT 60.025 50.000 13.13 13.13 42.16 4.58
2097 2229 3.002759 CGTAGGAGGGTTAACGTACTAGC 59.997 52.174 0.00 0.00 31.29 3.42
2098 2230 4.192317 ACGTAGGAGGGTTAACGTACTAG 58.808 47.826 0.00 0.00 45.85 2.57
2101 2233 3.501950 CAACGTAGGAGGGTTAACGTAC 58.498 50.000 0.00 0.00 46.89 3.67
2102 2234 2.094752 GCAACGTAGGAGGGTTAACGTA 60.095 50.000 0.00 0.00 46.89 3.57
2114 2247 2.230508 TGGAACAGAGTAGCAACGTAGG 59.769 50.000 0.00 0.00 0.00 3.18
2163 2297 9.613428 CCAGGTGTACTTCATCTATTGAAAATA 57.387 33.333 0.00 0.00 43.64 1.40
2164 2298 8.109634 ACCAGGTGTACTTCATCTATTGAAAAT 58.890 33.333 0.00 0.00 43.64 1.82
2168 2302 5.483937 ACACCAGGTGTACTTCATCTATTGA 59.516 40.000 24.77 0.00 45.56 2.57
2169 2303 5.734720 ACACCAGGTGTACTTCATCTATTG 58.265 41.667 24.77 0.00 45.56 1.90
2186 2348 5.605534 CCTATTCATCTAAGTGGACACCAG 58.394 45.833 0.00 0.00 32.34 4.00
2211 2376 8.814038 AGATGTTAAGGAGCAAAAGATACATT 57.186 30.769 0.00 0.00 0.00 2.71
2212 2377 8.814038 AAGATGTTAAGGAGCAAAAGATACAT 57.186 30.769 0.00 0.00 0.00 2.29
2213 2378 9.905713 ATAAGATGTTAAGGAGCAAAAGATACA 57.094 29.630 0.00 0.00 0.00 2.29
2291 2456 4.184629 CAAGTAATTCTGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2292 2457 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2293 2458 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2294 2459 3.612860 CGACAAGTAATTCTGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2295 2460 3.060895 GCGACAAGTAATTCTGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
2296 2461 2.991190 GCGACAAGTAATTCTGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2297 2462 2.734606 TGCGACAAGTAATTCTGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
2298 2463 3.673338 TCTGCGACAAGTAATTCTGAACG 59.327 43.478 0.00 0.00 0.00 3.95
2299 2464 5.591643 TTCTGCGACAAGTAATTCTGAAC 57.408 39.130 0.00 0.00 0.00 3.18
2300 2465 6.348458 CCATTTCTGCGACAAGTAATTCTGAA 60.348 38.462 0.00 0.00 0.00 3.02
2301 2466 5.122239 CCATTTCTGCGACAAGTAATTCTGA 59.878 40.000 0.00 0.00 0.00 3.27
2302 2467 5.122239 TCCATTTCTGCGACAAGTAATTCTG 59.878 40.000 0.00 0.00 0.00 3.02
2303 2468 5.245531 TCCATTTCTGCGACAAGTAATTCT 58.754 37.500 0.00 0.00 0.00 2.40
2304 2469 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2305 2470 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2306 2471 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2307 2472 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2308 2473 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2309 2474 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2310 2475 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2311 2476 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2312 2477 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2313 2478 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
2314 2479 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2315 2480 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2316 2481 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
2317 2482 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2342 2507 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
2343 2508 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
2344 2509 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
2345 2510 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
2346 2511 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
2347 2512 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
2348 2513 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
2349 2514 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
2350 2515 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
2351 2516 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
2352 2517 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
2353 2518 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
2354 2519 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
2355 2520 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
2356 2521 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
2357 2522 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
2358 2523 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
2359 2524 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
2360 2525 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
2361 2526 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
2362 2527 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
2363 2528 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
2364 2529 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2365 2530 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2366 2531 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2367 2532 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2368 2533 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2369 2534 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2370 2535 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2371 2536 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2372 2537 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2373 2538 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2374 2539 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2375 2540 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2376 2541 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2377 2542 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2378 2543 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
2379 2544 1.856629 AAATACTCCCTCCGTTCGGA 58.143 50.000 13.34 13.34 0.00 4.55
2380 2545 3.119029 TGTTAAATACTCCCTCCGTTCGG 60.119 47.826 4.74 4.74 0.00 4.30
2381 2546 4.110482 CTGTTAAATACTCCCTCCGTTCG 58.890 47.826 0.00 0.00 0.00 3.95
2382 2547 4.868734 CACTGTTAAATACTCCCTCCGTTC 59.131 45.833 0.00 0.00 0.00 3.95
2383 2548 4.828829 CACTGTTAAATACTCCCTCCGTT 58.171 43.478 0.00 0.00 0.00 4.44
2384 2549 3.369157 GCACTGTTAAATACTCCCTCCGT 60.369 47.826 0.00 0.00 0.00 4.69
2385 2550 3.195661 GCACTGTTAAATACTCCCTCCG 58.804 50.000 0.00 0.00 0.00 4.63
2386 2551 4.192317 CTGCACTGTTAAATACTCCCTCC 58.808 47.826 0.00 0.00 0.00 4.30
2387 2552 4.833390 ACTGCACTGTTAAATACTCCCTC 58.167 43.478 0.00 0.00 0.00 4.30
2388 2553 4.910458 ACTGCACTGTTAAATACTCCCT 57.090 40.909 0.00 0.00 0.00 4.20
2389 2554 7.472543 CATTAACTGCACTGTTAAATACTCCC 58.527 38.462 13.39 0.00 43.02 4.30
2412 2577 4.970662 AATTGCGATAGAAACACTGCAT 57.029 36.364 0.00 0.00 35.59 3.96
2436 2601 7.446625 GTCCATCAGCATTGAAATCCTATAACT 59.553 37.037 0.00 0.00 36.78 2.24
2462 2627 7.627298 ACAGATTCTTCAGGAAGATGAAATG 57.373 36.000 12.17 9.54 45.78 2.32
2463 2628 9.917887 ATAACAGATTCTTCAGGAAGATGAAAT 57.082 29.630 12.17 3.51 45.78 2.17
2464 2629 9.388506 GATAACAGATTCTTCAGGAAGATGAAA 57.611 33.333 12.17 0.00 45.78 2.69
2466 2631 7.126268 TGGATAACAGATTCTTCAGGAAGATGA 59.874 37.037 12.17 0.00 45.78 2.92
2467 2632 7.226325 GTGGATAACAGATTCTTCAGGAAGATG 59.774 40.741 12.17 10.23 45.78 2.90
2468 2633 7.092712 TGTGGATAACAGATTCTTCAGGAAGAT 60.093 37.037 12.17 3.69 39.44 2.40
2470 2635 6.409704 TGTGGATAACAGATTCTTCAGGAAG 58.590 40.000 2.60 2.60 34.20 3.46
2471 2636 6.373005 TGTGGATAACAGATTCTTCAGGAA 57.627 37.500 0.00 0.00 34.77 3.36
2472 2637 6.373005 TTGTGGATAACAGATTCTTCAGGA 57.627 37.500 0.00 0.00 40.74 3.86
2473 2638 7.337689 TCATTTGTGGATAACAGATTCTTCAGG 59.662 37.037 0.00 0.00 40.74 3.86
2474 2639 8.272545 TCATTTGTGGATAACAGATTCTTCAG 57.727 34.615 0.00 0.00 40.74 3.02
2475 2640 8.812513 ATCATTTGTGGATAACAGATTCTTCA 57.187 30.769 0.00 0.00 40.74 3.02
2479 2668 8.570488 TGCATATCATTTGTGGATAACAGATTC 58.430 33.333 0.00 0.00 40.74 2.52
2485 2674 9.188588 CAAGAATGCATATCATTTGTGGATAAC 57.811 33.333 0.00 0.00 44.95 1.89
2493 2682 7.856398 GTCTCACTCAAGAATGCATATCATTTG 59.144 37.037 0.00 1.15 44.95 2.32
2500 2689 3.785486 CGGTCTCACTCAAGAATGCATA 58.215 45.455 0.00 0.00 0.00 3.14
2582 2771 3.243410 CAGTGCGACGTGTACAACTTTAA 59.757 43.478 0.00 0.00 35.35 1.52
2617 2806 5.094387 AGAAGAGGTTCATACTCCTTCCAA 58.906 41.667 0.00 0.00 35.38 3.53
2621 2810 9.674068 GAAATTTAGAAGAGGTTCATACTCCTT 57.326 33.333 0.00 0.00 35.58 3.36
2679 2868 2.034687 CCTGCAGTGGGGTTCCAG 59.965 66.667 13.81 0.00 45.05 3.86
2728 2917 4.327854 GTTCCTGCGAACTGTTGAATAG 57.672 45.455 0.00 0.00 44.29 1.73
2808 2997 3.096092 AGGAAAAACTTTGCAGGTGTCA 58.904 40.909 0.00 0.00 0.00 3.58
2809 2998 3.801114 AGGAAAAACTTTGCAGGTGTC 57.199 42.857 0.00 0.00 0.00 3.67
2863 3053 2.293122 GTGGCACAACAACTGCAATCTA 59.707 45.455 13.86 0.00 44.16 1.98
2864 3054 1.067516 GTGGCACAACAACTGCAATCT 59.932 47.619 13.86 0.00 44.16 2.40
2906 3098 0.249322 AAAGCAGTTGCAGCAAGCTG 60.249 50.000 19.62 21.58 45.94 4.24
2941 3135 4.337555 GCCGAGTTGTCTAGGTACTCAATA 59.662 45.833 15.36 0.00 41.75 1.90
2975 3169 6.494893 TGGTTTTCGGAATTAGACTCATTG 57.505 37.500 0.00 0.00 0.00 2.82
2990 3184 8.559536 AGTATGCAAGTTATATCATGGTTTTCG 58.440 33.333 0.00 0.00 0.00 3.46
3004 3198 6.205658 TGCACAACATAACAGTATGCAAGTTA 59.794 34.615 0.00 0.00 42.53 2.24
3099 3293 2.381941 GCCTCCAATCCCCTCTGCT 61.382 63.158 0.00 0.00 0.00 4.24
3123 3317 7.237209 AGCATATTCCTTTCTTTCTGCTTTT 57.763 32.000 0.00 0.00 35.31 2.27
3153 3347 0.969409 AAATGAAGCCAGAGCCTGCC 60.969 55.000 0.00 0.00 41.25 4.85
3261 3455 6.101150 TGGTATAATCATCAACTACCCTTGCT 59.899 38.462 0.00 0.00 32.56 3.91
3267 3461 8.367911 TGAGACATGGTATAATCATCAACTACC 58.632 37.037 0.00 0.00 33.86 3.18
3334 3528 3.443681 GCACCTGCCACAACAATTAGTAT 59.556 43.478 0.00 0.00 34.31 2.12
3336 3530 1.613437 GCACCTGCCACAACAATTAGT 59.387 47.619 0.00 0.00 34.31 2.24
3351 3545 5.503927 CCATATATAAGATGGCTTGCACCT 58.496 41.667 4.53 0.00 37.64 4.00
3428 3622 6.156949 AGGATCAAGTAGTACCACAACATGAT 59.843 38.462 0.00 0.78 0.00 2.45
3429 3623 5.483937 AGGATCAAGTAGTACCACAACATGA 59.516 40.000 0.00 0.00 0.00 3.07
3432 3626 4.836175 TCAGGATCAAGTAGTACCACAACA 59.164 41.667 0.00 0.00 0.00 3.33
3524 3718 5.288804 GGTCAAAGCAATTTCTACTGCAAA 58.711 37.500 0.00 0.00 41.17 3.68
3530 3724 3.234386 GCACGGTCAAAGCAATTTCTAC 58.766 45.455 0.00 0.00 0.00 2.59
3661 3859 4.421058 GACGATAAGGAAATGTTTTGGCC 58.579 43.478 0.00 0.00 0.00 5.36
3687 3885 6.377327 AGCAAAACTATACAAATCCGATGG 57.623 37.500 0.00 0.00 0.00 3.51
3688 3886 9.385902 CATTAGCAAAACTATACAAATCCGATG 57.614 33.333 0.00 0.00 0.00 3.84
3691 3889 7.925993 TCCATTAGCAAAACTATACAAATCCG 58.074 34.615 0.00 0.00 0.00 4.18
3698 3896 9.989869 GAAAGAGTTCCATTAGCAAAACTATAC 57.010 33.333 0.00 0.00 32.34 1.47
3707 3906 5.227569 TCAGTGAAAGAGTTCCATTAGCA 57.772 39.130 0.00 0.00 32.28 3.49
3805 4004 5.441500 TCAGTCATAACAGGGTTTTTGTCA 58.558 37.500 0.00 0.00 0.00 3.58
3829 4028 6.070424 TCCTTACTTGGAATCGGTGAATTAGT 60.070 38.462 0.00 0.00 32.39 2.24
3853 4052 8.134905 AGCAAAACAGAATCAATGAAAAGTTC 57.865 30.769 0.00 0.00 0.00 3.01
3856 4055 6.129009 CGGAGCAAAACAGAATCAATGAAAAG 60.129 38.462 0.00 0.00 0.00 2.27
3858 4057 5.221224 ACGGAGCAAAACAGAATCAATGAAA 60.221 36.000 0.00 0.00 0.00 2.69
3861 4060 3.916172 CACGGAGCAAAACAGAATCAATG 59.084 43.478 0.00 0.00 0.00 2.82
3862 4061 3.057315 CCACGGAGCAAAACAGAATCAAT 60.057 43.478 0.00 0.00 0.00 2.57
3865 4065 1.880027 ACCACGGAGCAAAACAGAATC 59.120 47.619 0.00 0.00 0.00 2.52
3928 4128 4.946157 TCAAAATCTCAGAGGATTTCCAGC 59.054 41.667 0.00 0.00 42.77 4.85
4027 4230 5.805486 CAGTTGATTGGCTTGAATGAATCTG 59.195 40.000 0.00 0.00 0.00 2.90
4029 4232 5.717119 ACAGTTGATTGGCTTGAATGAATC 58.283 37.500 0.00 0.00 0.00 2.52
4153 4356 0.739813 ATCGCCCTTTCCGTCTTTCG 60.740 55.000 0.00 0.00 39.52 3.46
4201 4404 6.262496 CGACAACAGACCCTCTAATAGTATCA 59.738 42.308 0.00 0.00 0.00 2.15
4432 4635 3.235200 CCCAACACCAGAAATAAACCCA 58.765 45.455 0.00 0.00 0.00 4.51
4679 4882 7.610305 GGGTAGAAAGATGTAAATTTGAGGTCA 59.390 37.037 0.00 0.00 0.00 4.02
4680 4883 7.201617 CGGGTAGAAAGATGTAAATTTGAGGTC 60.202 40.741 0.00 0.00 0.00 3.85
4812 5015 1.074889 ACCAACTTATGCCCGGAACTT 59.925 47.619 0.73 0.00 0.00 2.66
4819 5022 5.652994 TCAACAATAACCAACTTATGCCC 57.347 39.130 0.00 0.00 0.00 5.36
4970 5240 6.168389 AGCTGGAAATGGATCAATTTTTCAC 58.832 36.000 9.48 1.45 29.89 3.18
4979 5249 6.252599 AGTACATAAGCTGGAAATGGATCA 57.747 37.500 0.00 0.00 0.00 2.92
5037 5307 8.615211 GCAATGATCTTCAACATGAATACAGTA 58.385 33.333 0.00 0.00 35.59 2.74
5285 5743 5.936956 ACTCTTCTCAGCTTTCTTGTTATGG 59.063 40.000 0.00 0.00 0.00 2.74
5307 5765 5.412594 CACAACAATATGAGCTAACCACACT 59.587 40.000 0.00 0.00 0.00 3.55
5372 5830 5.894298 AGATAACATAGAAGCACCATCCA 57.106 39.130 0.00 0.00 0.00 3.41
5418 5876 2.330231 TCGCTTGCTTGAAAAATCCG 57.670 45.000 0.00 0.00 0.00 4.18
5469 5940 1.274069 TGAGGAGGGAGAAAGGCAGAT 60.274 52.381 0.00 0.00 0.00 2.90
5571 6042 0.670546 GTGGTGTGGTGACCTCATCG 60.671 60.000 9.82 0.00 36.88 3.84
5643 6120 4.755614 GCGTTGCTGCTGCTGCTC 62.756 66.667 27.67 19.88 40.48 4.26
5661 6138 2.113433 CGGGTCACTCGATCGGTCT 61.113 63.158 16.41 0.00 0.00 3.85
5695 6172 1.234821 CTTTGTAGCCACGGAAAGCA 58.765 50.000 0.00 0.00 0.00 3.91
5709 6187 5.466127 ACATATATGGTTGGGGACTTTGT 57.534 39.130 16.96 0.00 0.00 2.83
5789 6269 1.227973 GTCCATTCCTGGCCGATCC 60.228 63.158 0.00 0.00 42.80 3.36
5885 6366 8.594881 ACGCTCTTATATTTCTTTATGGAGTG 57.405 34.615 0.00 0.00 33.94 3.51
5886 6367 9.614792 AAACGCTCTTATATTTCTTTATGGAGT 57.385 29.630 0.00 0.00 0.00 3.85
5959 6447 6.550108 TCTTCTCCTTACATATGTACTCCCAC 59.450 42.308 15.20 0.00 0.00 4.61
5965 6453 7.872881 TCATCGTCTTCTCCTTACATATGTAC 58.127 38.462 15.20 2.56 0.00 2.90
6014 6502 0.455815 CTCAAAGCCCGTAATTGCCC 59.544 55.000 0.00 0.00 0.00 5.36
6015 6503 1.173913 ACTCAAAGCCCGTAATTGCC 58.826 50.000 0.00 0.00 0.00 4.52
6060 6548 1.113788 AAATGGATGGCAATCGTGGG 58.886 50.000 0.00 0.00 33.18 4.61
6061 6549 5.902613 ATATAAATGGATGGCAATCGTGG 57.097 39.130 0.00 0.00 33.18 4.94
6062 6550 8.285394 GCTATATATAAATGGATGGCAATCGTG 58.715 37.037 0.00 0.00 33.18 4.35
6063 6551 7.445402 GGCTATATATAAATGGATGGCAATCGT 59.555 37.037 0.00 0.00 33.18 3.73
6064 6552 7.445096 TGGCTATATATAAATGGATGGCAATCG 59.555 37.037 0.00 0.00 33.18 3.34
6065 6553 8.696043 TGGCTATATATAAATGGATGGCAATC 57.304 34.615 0.00 0.00 0.00 2.67
6066 6554 7.727186 CCTGGCTATATATAAATGGATGGCAAT 59.273 37.037 0.00 0.00 0.00 3.56
6067 6555 7.062322 CCTGGCTATATATAAATGGATGGCAA 58.938 38.462 0.00 0.00 0.00 4.52
6068 6556 6.160282 ACCTGGCTATATATAAATGGATGGCA 59.840 38.462 0.00 0.00 0.00 4.92
6069 6557 6.605119 ACCTGGCTATATATAAATGGATGGC 58.395 40.000 0.00 0.00 0.00 4.40
6070 6558 8.274322 TGAACCTGGCTATATATAAATGGATGG 58.726 37.037 0.00 0.00 0.00 3.51
6071 6559 9.685276 TTGAACCTGGCTATATATAAATGGATG 57.315 33.333 0.00 0.00 0.00 3.51
6072 6560 9.911788 CTTGAACCTGGCTATATATAAATGGAT 57.088 33.333 0.00 0.00 0.00 3.41
6073 6561 9.111519 TCTTGAACCTGGCTATATATAAATGGA 57.888 33.333 0.00 0.00 0.00 3.41
6074 6562 9.167311 GTCTTGAACCTGGCTATATATAAATGG 57.833 37.037 0.00 0.00 0.00 3.16
6083 6571 8.871629 TTTTAATTGTCTTGAACCTGGCTATA 57.128 30.769 0.00 0.00 0.00 1.31
6084 6572 7.669722 TCTTTTAATTGTCTTGAACCTGGCTAT 59.330 33.333 0.00 0.00 0.00 2.97
6085 6573 7.001674 TCTTTTAATTGTCTTGAACCTGGCTA 58.998 34.615 0.00 0.00 0.00 3.93
6086 6574 5.833131 TCTTTTAATTGTCTTGAACCTGGCT 59.167 36.000 0.00 0.00 0.00 4.75
6087 6575 6.084326 TCTTTTAATTGTCTTGAACCTGGC 57.916 37.500 0.00 0.00 0.00 4.85
6088 6576 7.229506 AGACTCTTTTAATTGTCTTGAACCTGG 59.770 37.037 0.00 0.00 36.50 4.45
6089 6577 8.159344 AGACTCTTTTAATTGTCTTGAACCTG 57.841 34.615 0.00 0.00 36.50 4.00
6090 6578 8.214364 AGAGACTCTTTTAATTGTCTTGAACCT 58.786 33.333 0.00 0.00 39.53 3.50
6094 6582 8.345565 GCAAAGAGACTCTTTTAATTGTCTTGA 58.654 33.333 24.75 0.00 43.62 3.02
6095 6583 8.348507 AGCAAAGAGACTCTTTTAATTGTCTTG 58.651 33.333 24.75 13.13 43.62 3.02
6096 6584 8.457238 AGCAAAGAGACTCTTTTAATTGTCTT 57.543 30.769 24.75 0.69 43.62 3.01
6097 6585 8.994170 GTAGCAAAGAGACTCTTTTAATTGTCT 58.006 33.333 24.75 16.87 43.62 3.41
6098 6586 8.994170 AGTAGCAAAGAGACTCTTTTAATTGTC 58.006 33.333 24.75 11.91 43.62 3.18
6099 6587 8.910351 AGTAGCAAAGAGACTCTTTTAATTGT 57.090 30.769 24.75 10.41 43.62 2.71
6100 6588 9.213799 AGAGTAGCAAAGAGACTCTTTTAATTG 57.786 33.333 24.75 16.29 46.06 2.32
6109 6597 6.393990 TGATCAAAGAGTAGCAAAGAGACTC 58.606 40.000 0.00 0.00 39.96 3.36
6112 6600 5.174395 GCTGATCAAAGAGTAGCAAAGAGA 58.826 41.667 0.00 0.00 34.64 3.10
6113 6601 4.332268 GGCTGATCAAAGAGTAGCAAAGAG 59.668 45.833 0.00 0.00 36.15 2.85
6114 6602 4.256920 GGCTGATCAAAGAGTAGCAAAGA 58.743 43.478 0.00 0.00 36.15 2.52
6120 6608 4.440880 CTTCCTGGCTGATCAAAGAGTAG 58.559 47.826 0.00 0.00 0.00 2.57
6121 6609 3.198635 CCTTCCTGGCTGATCAAAGAGTA 59.801 47.826 0.00 0.00 0.00 2.59
6122 6610 2.026449 CCTTCCTGGCTGATCAAAGAGT 60.026 50.000 0.00 0.00 0.00 3.24
6123 6611 2.641305 CCTTCCTGGCTGATCAAAGAG 58.359 52.381 0.00 0.00 0.00 2.85
6124 6612 1.283029 CCCTTCCTGGCTGATCAAAGA 59.717 52.381 0.00 0.00 0.00 2.52
6126 6614 1.004745 GTCCCTTCCTGGCTGATCAAA 59.995 52.381 0.00 0.00 0.00 2.69
6127 6615 0.620556 GTCCCTTCCTGGCTGATCAA 59.379 55.000 0.00 0.00 0.00 2.57
6128 6616 0.252881 AGTCCCTTCCTGGCTGATCA 60.253 55.000 0.00 0.00 0.00 2.92
6133 7001 2.046280 AAAGTAGTCCCTTCCTGGCT 57.954 50.000 0.00 0.00 0.00 4.75
6134 7002 3.712218 AGATAAAGTAGTCCCTTCCTGGC 59.288 47.826 0.00 0.00 0.00 4.85
6137 7005 6.960542 TCTTTCAGATAAAGTAGTCCCTTCCT 59.039 38.462 0.00 0.00 0.00 3.36
6142 7010 6.407202 TGCTTCTTTCAGATAAAGTAGTCCC 58.593 40.000 0.00 0.00 30.43 4.46
6143 7011 7.766278 TCATGCTTCTTTCAGATAAAGTAGTCC 59.234 37.037 0.00 0.00 30.43 3.85
6174 7042 9.646427 AGAAAAATGACTGACTGAGAACTATAC 57.354 33.333 0.00 0.00 0.00 1.47
6176 7044 9.868277 CTAGAAAAATGACTGACTGAGAACTAT 57.132 33.333 0.00 0.00 0.00 2.12
6185 7053 9.832445 TTTGTTACTCTAGAAAAATGACTGACT 57.168 29.630 0.00 0.00 0.00 3.41
6224 7092 8.875803 TCCTTGCATACGTATAAAAGTACAAAG 58.124 33.333 19.95 9.72 0.00 2.77
6231 7099 7.921214 TCTCTTCTCCTTGCATACGTATAAAAG 59.079 37.037 7.96 13.71 0.00 2.27
6235 7103 6.320418 TGTTCTCTTCTCCTTGCATACGTATA 59.680 38.462 7.96 0.00 0.00 1.47
6236 7104 5.127194 TGTTCTCTTCTCCTTGCATACGTAT 59.873 40.000 1.14 1.14 0.00 3.06
6237 7105 4.461431 TGTTCTCTTCTCCTTGCATACGTA 59.539 41.667 0.00 0.00 0.00 3.57
6238 7106 3.258372 TGTTCTCTTCTCCTTGCATACGT 59.742 43.478 0.00 0.00 0.00 3.57
6239 7107 3.614616 GTGTTCTCTTCTCCTTGCATACG 59.385 47.826 0.00 0.00 0.00 3.06
6240 7108 3.614616 CGTGTTCTCTTCTCCTTGCATAC 59.385 47.826 0.00 0.00 0.00 2.39
6244 7113 2.440539 TCGTGTTCTCTTCTCCTTGC 57.559 50.000 0.00 0.00 0.00 4.01
6266 7135 2.325583 TTGCCAATCCACGAGATACC 57.674 50.000 0.00 0.00 33.66 2.73
6269 7138 1.942657 CGAATTGCCAATCCACGAGAT 59.057 47.619 0.00 0.00 36.48 2.75
6273 7142 0.523968 CTGCGAATTGCCAATCCACG 60.524 55.000 0.00 0.00 45.60 4.94
6282 7151 1.912001 TAATTGCTGCTGCGAATTGC 58.088 45.000 23.22 4.96 43.34 3.56
6283 7152 2.855963 CCTTAATTGCTGCTGCGAATTG 59.144 45.455 23.22 14.15 43.34 2.32
6284 7153 2.159198 CCCTTAATTGCTGCTGCGAATT 60.159 45.455 20.64 20.64 43.34 2.17
6288 7158 1.226773 GCCCTTAATTGCTGCTGCG 60.227 57.895 11.21 0.00 43.34 5.18
6294 7164 0.328258 ACTCACGGCCCTTAATTGCT 59.672 50.000 0.00 0.00 0.00 3.91
6312 7182 2.095768 TGCAGCAGATTAAAGTTGCGAC 60.096 45.455 0.00 0.00 43.68 5.19
6315 7185 5.406175 TGAATTTGCAGCAGATTAAAGTTGC 59.594 36.000 11.04 7.48 41.54 4.17
6347 7217 9.586732 CCCCTTAATCATCCAATACTATTTCAA 57.413 33.333 0.00 0.00 0.00 2.69
6348 7218 8.732854 ACCCCTTAATCATCCAATACTATTTCA 58.267 33.333 0.00 0.00 0.00 2.69
6351 7221 9.629649 TCTACCCCTTAATCATCCAATACTATT 57.370 33.333 0.00 0.00 0.00 1.73
6352 7222 9.629649 TTCTACCCCTTAATCATCCAATACTAT 57.370 33.333 0.00 0.00 0.00 2.12
6353 7223 9.455144 TTTCTACCCCTTAATCATCCAATACTA 57.545 33.333 0.00 0.00 0.00 1.82
6354 7224 7.947782 TTCTACCCCTTAATCATCCAATACT 57.052 36.000 0.00 0.00 0.00 2.12
6355 7225 8.218488 ACTTTCTACCCCTTAATCATCCAATAC 58.782 37.037 0.00 0.00 0.00 1.89
6356 7226 8.344939 ACTTTCTACCCCTTAATCATCCAATA 57.655 34.615 0.00 0.00 0.00 1.90
6357 7227 7.226059 ACTTTCTACCCCTTAATCATCCAAT 57.774 36.000 0.00 0.00 0.00 3.16
6358 7228 6.652205 ACTTTCTACCCCTTAATCATCCAA 57.348 37.500 0.00 0.00 0.00 3.53
6359 7229 6.652205 AACTTTCTACCCCTTAATCATCCA 57.348 37.500 0.00 0.00 0.00 3.41
6360 7230 6.321435 CCAAACTTTCTACCCCTTAATCATCC 59.679 42.308 0.00 0.00 0.00 3.51
6361 7231 6.183360 GCCAAACTTTCTACCCCTTAATCATC 60.183 42.308 0.00 0.00 0.00 2.92
6362 7232 5.656859 GCCAAACTTTCTACCCCTTAATCAT 59.343 40.000 0.00 0.00 0.00 2.45
6363 7233 5.014202 GCCAAACTTTCTACCCCTTAATCA 58.986 41.667 0.00 0.00 0.00 2.57
6364 7234 5.014202 TGCCAAACTTTCTACCCCTTAATC 58.986 41.667 0.00 0.00 0.00 1.75
6365 7235 5.005628 TGCCAAACTTTCTACCCCTTAAT 57.994 39.130 0.00 0.00 0.00 1.40
6366 7236 4.456662 TGCCAAACTTTCTACCCCTTAA 57.543 40.909 0.00 0.00 0.00 1.85
6367 7237 4.668138 ATGCCAAACTTTCTACCCCTTA 57.332 40.909 0.00 0.00 0.00 2.69
6368 7238 3.542969 ATGCCAAACTTTCTACCCCTT 57.457 42.857 0.00 0.00 0.00 3.95
6369 7239 3.053619 CCTATGCCAAACTTTCTACCCCT 60.054 47.826 0.00 0.00 0.00 4.79
6370 7240 3.288092 CCTATGCCAAACTTTCTACCCC 58.712 50.000 0.00 0.00 0.00 4.95
6371 7241 2.688446 GCCTATGCCAAACTTTCTACCC 59.312 50.000 0.00 0.00 0.00 3.69
6399 7269 7.318141 CAGGCAGAAAGATTTGATTGTAACAT 58.682 34.615 0.00 0.00 0.00 2.71
6407 7277 7.469732 GCTTTATAGCAGGCAGAAAGATTTGAT 60.470 37.037 13.37 0.00 46.95 2.57
6440 7310 3.284617 TCTGGACGATGACGAGGAAATA 58.715 45.455 0.00 0.00 42.66 1.40
6445 7315 0.660488 CTCTCTGGACGATGACGAGG 59.340 60.000 0.00 0.00 42.66 4.63
6492 7362 1.691196 TTTGTCACTTGGCTCAAGGG 58.309 50.000 16.21 13.31 45.32 3.95
6495 7365 3.870419 GCAAAATTTGTCACTTGGCTCAA 59.130 39.130 7.60 0.00 0.00 3.02
6497 7367 2.802247 GGCAAAATTTGTCACTTGGCTC 59.198 45.455 5.33 0.00 40.22 4.70
6518 7389 0.107897 TATAGGTGGCCAGCAACACG 60.108 55.000 34.87 0.00 38.46 4.49
6584 7455 1.862123 CATGTGTGTCACCGTGCTC 59.138 57.895 0.00 0.00 32.73 4.26
6589 7460 2.616330 GGGTGCATGTGTGTCACCG 61.616 63.158 11.76 0.00 45.47 4.94
6662 7533 2.785357 AGGGATGGAGAGTTCTAGGG 57.215 55.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.