AutoCloner

Multiple sequence alignment - TraesCS1A01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G297300	chr1A	100.000	2273	0	0	1	2273	492268558	492270830	0.000000e+00	4198.0
1	TraesCS1A01G297300	chr1A	100.000	40	0	0	2182	2221	63350820	63350781	8.710000e-10	75.0
2	TraesCS1A01G297300	chr2D	96.119	1314	47	3	1	1313	132690768	132689458	0.000000e+00	2141.0
3	TraesCS1A01G297300	chr2D	80.000	190	26	9	1299	1481	551045653	551045469	1.830000e-26	130.0
4	TraesCS1A01G297300	chr2D	80.870	115	15	5	1959	2073	544614737	544614844	1.450000e-12	84.2
5	TraesCS1A01G297300	chr5D	96.313	1302	46	2	1	1301	332802659	332803959	0.000000e+00	2137.0
6	TraesCS1A01G297300	chr5D	96.041	1162	45	1	1	1161	459244252	459243091	0.000000e+00	1890.0
7	TraesCS1A01G297300	chr5D	95.000	40	2	0	2182	2221	249531573	249531534	1.880000e-06	63.9
8	TraesCS1A01G297300	chr6A	94.244	1303	74	1	1	1302	612193842	612192540	0.000000e+00	1989.0
9	TraesCS1A01G297300	chr3D	92.852	1301	90	2	3	1302	553376258	553374960	0.000000e+00	1884.0
10	TraesCS1A01G297300	chr3D	76.703	279	53	10	1705	1974	346643076	346642801	6.540000e-31	145.0
11	TraesCS1A01G297300	chr3D	80.208	192	29	7	1300	1483	339589946	339589756	3.940000e-28	135.0
12	TraesCS1A01G297300	chr3D	77.083	240	41	10	1757	1987	295966976	295966742	2.370000e-25	126.0
13	TraesCS1A01G297300	chr3D	92.857	42	3	0	2180	2221	516897091	516897050	6.780000e-06	62.1
14	TraesCS1A01G297300	chr1D	91.558	1303	107	2	1	1302	354513888	354515188	0.000000e+00	1794.0
15	TraesCS1A01G297300	chr1D	85.253	712	60	19	1567	2273	392951411	392950740	0.000000e+00	691.0
16	TraesCS1A01G297300	chr1D	81.319	182	23	11	1300	1473	896769	896591	1.090000e-28	137.0
17	TraesCS1A01G297300	chr1D	79.612	103	16	5	1730	1831	121314249	121314347	4.050000e-08	69.4
18	TraesCS1A01G297300	chr1D	97.436	39	1	0	2182	2220	479721435	479721473	1.460000e-07	67.6
19	TraesCS1A01G297300	chr4B	91.201	1307	114	1	1	1306	661249022	661247716	0.000000e+00	1775.0
20	TraesCS1A01G297300	chr3B	89.655	1305	132	3	1	1302	33098933	33097629	0.000000e+00	1659.0
21	TraesCS1A01G297300	chr3B	76.774	310	49	19	1772	2069	390218115	390217817	3.910000e-33	152.0
22	TraesCS1A01G297300	chr3B	79.275	193	30	8	1300	1483	773163244	773163435	2.370000e-25	126.0
23	TraesCS1A01G297300	chr2B	89.631	1302	132	2	1	1301	1653179	1651880	0.000000e+00	1653.0
24	TraesCS1A01G297300	chr2B	80.000	100	14	5	1973	2072	650169434	650169527	4.050000e-08	69.4
25	TraesCS1A01G297300	chr1B	84.165	802	59	22	1300	2075	529700662	529701421	0.000000e+00	715.0
26	TraesCS1A01G297300	chr1B	88.889	99	10	1	2059	2156	529701430	529701528	1.100000e-23	121.0
27	TraesCS1A01G297300	chr4D	81.579	190	29	5	1300	1483	311274958	311274769	3.910000e-33	152.0
28	TraesCS1A01G297300	chr4D	90.909	44	3	1	2182	2224	92197980	92197937	8.770000e-05	58.4
29	TraesCS1A01G297300	chr3A	77.206	272	54	8	1707	1974	457085216	457085483	3.910000e-33	152.0
30	TraesCS1A01G297300	chr3A	95.238	42	2	0	2180	2221	652638701	652638660	1.460000e-07	67.6
31	TraesCS1A01G297300	chr3A	95.238	42	2	0	2180	2221	652686856	652686815	1.460000e-07	67.6
32	TraesCS1A01G297300	chr3A	92.857	42	3	0	2180	2221	652347507	652347466	6.780000e-06	62.1
33	TraesCS1A01G297300	chr3A	92.857	42	3	0	2180	2221	652562939	652562898	6.780000e-06	62.1
34	TraesCS1A01G297300	chr3A	79.518	83	12	4	1994	2074	584127096	584127175	1.000000e-03	54.7
35	TraesCS1A01G297300	chr5A	78.378	222	29	9	1678	1895	631717013	631716807	2.370000e-25	126.0
36	TraesCS1A01G297300	chr5A	77.083	192	35	9	1300	1483	680213935	680214125	3.990000e-18	102.0
37	TraesCS1A01G297300	chr7A	79.339	121	19	5	1716	1833	709773082	709772965	1.870000e-11	80.5
38	TraesCS1A01G297300	chr7D	93.617	47	2	1	1788	1833	617069182	617069136	4.050000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G297300	chr1A	492268558	492270830	2272	False	4198	4198	100.000	1	2273	1	chr1A.!!$F1	2272
1	TraesCS1A01G297300	chr2D	132689458	132690768	1310	True	2141	2141	96.119	1	1313	1	chr2D.!!$R1	1312
2	TraesCS1A01G297300	chr5D	332802659	332803959	1300	False	2137	2137	96.313	1	1301	1	chr5D.!!$F1	1300
3	TraesCS1A01G297300	chr5D	459243091	459244252	1161	True	1890	1890	96.041	1	1161	1	chr5D.!!$R2	1160
4	TraesCS1A01G297300	chr6A	612192540	612193842	1302	True	1989	1989	94.244	1	1302	1	chr6A.!!$R1	1301
5	TraesCS1A01G297300	chr3D	553374960	553376258	1298	True	1884	1884	92.852	3	1302	1	chr3D.!!$R5	1299
6	TraesCS1A01G297300	chr1D	354513888	354515188	1300	False	1794	1794	91.558	1	1302	1	chr1D.!!$F2	1301
7	TraesCS1A01G297300	chr1D	392950740	392951411	671	True	691	691	85.253	1567	2273	1	chr1D.!!$R2	706
8	TraesCS1A01G297300	chr4B	661247716	661249022	1306	True	1775	1775	91.201	1	1306	1	chr4B.!!$R1	1305
9	TraesCS1A01G297300	chr3B	33097629	33098933	1304	True	1659	1659	89.655	1	1302	1	chr3B.!!$R1	1301
10	TraesCS1A01G297300	chr2B	1651880	1653179	1299	True	1653	1653	89.631	1	1301	1	chr2B.!!$R1	1300
11	TraesCS1A01G297300	chr1B	529700662	529701528	866	False	418	715	86.527	1300	2156	2	chr1B.!!$F1	856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
751	753	0.033699	GCTGGAGCTTCCCTTGGAAT	60.034	55.0	0.0	0.0	41.23	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2249	2311	1.098712	GTGGTGCCTTTGTTCGACCA	61.099	55.0	0.0	0.0	34.26	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	3.682885	CTGCGGCCCAATGCACAA	61.683	61.111	0.00	0.00	43.89	3.33
95	96	2.566833	TGATGTGACTTGGTCTTGGG	57.433	50.000	0.00	0.00	33.15	4.12
130	131	7.747155	TGTTCGAGAAAATTTTATACCACCA	57.253	32.000	2.75	0.00	0.00	4.17
250	251	1.709203	GCGTATCGTGCTCTAATGACG	59.291	52.381	0.00	0.00	34.38	4.35
257	258	2.857748	CGTGCTCTAATGACGCATAACA	59.142	45.455	0.00	0.00	35.93	2.41
295	296	0.460311	AAGGGGCGACTACAGAATCG	59.540	55.000	0.00	0.00	41.32	3.34
366	367	1.965643	ACCTAAGGTGCGTGTGTTCTA	59.034	47.619	0.00	0.00	32.98	2.10
415	416	3.445450	CAGTGGAGAGCACACTACAGTAT	59.555	47.826	0.00	0.00	46.76	2.12
423	424	5.241949	AGAGCACACTACAGTATAGGCATAC	59.758	44.000	0.00	0.00	37.83	2.39
442	443	1.270839	ACTGCAACCTTAGCACGATGT	60.271	47.619	0.00	0.00	37.02	3.06
459	460	1.429930	TGTAAGGTGTGCAAGGGAGA	58.570	50.000	0.00	0.00	0.00	3.71
511	512	5.329035	AGTGTTCACATGCTCAAACTTTT	57.671	34.783	5.74	0.00	0.00	2.27
631	633	4.023021	GTGACCGGGCAAAAATTGTTACTA	60.023	41.667	14.43	0.00	0.00	1.82
643	645	6.455360	AAATTGTTACTATCATGTGGGCTG	57.545	37.500	0.00	0.00	0.00	4.85
751	753	0.033699	GCTGGAGCTTCCCTTGGAAT	60.034	55.000	0.00	0.00	41.23	3.01
835	837	4.202253	ACACAGATGCTAGTGTTTCAGTGA	60.202	41.667	12.31	0.00	46.04	3.41
990	992	1.229428	CACAGCTTCGAGGCTTTTCA	58.771	50.000	20.67	0.00	41.00	2.69
1029	1031	6.259550	ACAGATTGCTTAGAATTGGTTCAC	57.740	37.500	0.00	0.00	36.79	3.18
1074	1076	2.511373	TCCATTGTAGCGCCGCTG	60.511	61.111	23.97	4.88	40.10	5.18
1324	1332	3.260884	GGAAGATATACAGGCAATCGGGA	59.739	47.826	0.00	0.00	0.00	5.14
1325	1333	4.262894	GGAAGATATACAGGCAATCGGGAA	60.263	45.833	0.00	0.00	0.00	3.97
1329	1337	2.691409	TACAGGCAATCGGGAAAGAG	57.309	50.000	0.00	0.00	0.00	2.85
1370	1378	9.605275	TTGCTATAAGGAGATATACATGCAATC	57.395	33.333	0.00	0.00	29.11	2.67
1372	1380	8.138074	GCTATAAGGAGATATACATGCAATCGA	58.862	37.037	0.00	0.00	0.00	3.59
1374	1382	5.336150	AGGAGATATACATGCAATCGAGG	57.664	43.478	0.00	0.00	0.00	4.63
1419	1427	4.945543	GGGCTAAAAAGGAATTACGAGGAA	59.054	41.667	0.00	0.00	0.00	3.36
1422	1430	7.283807	GGGCTAAAAAGGAATTACGAGGAATTA	59.716	37.037	0.00	0.00	0.00	1.40
1615	1644	2.159531	TGCTTATGCTCACGTTGCAATC	60.160	45.455	15.55	7.11	44.01	2.67
1674	1703	9.890629	TGGAATTCTATACCTGATATAATGTGC	57.109	33.333	5.23	0.00	0.00	4.57
1730	1760	7.013178	TGAGCTTGTGATGAACAGTTAAATTCA	59.987	33.333	0.00	1.72	40.74	2.57
1731	1761	7.365741	AGCTTGTGATGAACAGTTAAATTCAG	58.634	34.615	4.84	0.00	40.74	3.02
1911	1947	9.995003	TTTAGAGTATCAATTTTGTTTTGCCAT	57.005	25.926	0.00	0.00	37.82	4.40
1927	1963	2.754552	TGCCATGGCTTCTACAAATGTC	59.245	45.455	35.53	3.76	42.51	3.06
1946	1982	8.758715	CAAATGTCCTTTCAAGATGAAACTTTC	58.241	33.333	1.57	0.00	41.02	2.62
1953	1989	7.383300	CCTTTCAAGATGAAACTTTCCAATCAC	59.617	37.037	1.57	0.00	41.02	3.06
1955	1991	7.206981	TCAAGATGAAACTTTCCAATCACTC	57.793	36.000	0.00	0.00	0.00	3.51
1970	2006	4.877378	ATCACTCACAACATTTGCCAAT	57.123	36.364	0.00	0.00	0.00	3.16
1984	2020	7.424227	CATTTGCCAATGTTAGTCACAATTT	57.576	32.000	2.36	0.00	39.50	1.82
1985	2021	7.863666	CATTTGCCAATGTTAGTCACAATTTT	58.136	30.769	2.36	0.00	39.50	1.82
1986	2022	7.856145	TTTGCCAATGTTAGTCACAATTTTT	57.144	28.000	0.00	0.00	39.50	1.94
2036	2072	9.369672	ACTATTTCCATTTTTACTGTTAACCCA	57.630	29.630	2.48	0.00	0.00	4.51
2112	2174	9.362539	CATTCAGGATTTATGCATAAATAAGGC	57.637	33.333	33.92	24.17	41.59	4.35
2113	2175	7.466746	TCAGGATTTATGCATAAATAAGGCC	57.533	36.000	33.92	29.51	41.59	5.19
2130	2192	3.482436	AGGCCGTGATACTTTTGAAACA	58.518	40.909	0.00	0.00	0.00	2.83
2142	2204	6.385649	ACTTTTGAAACATATCCAACGTGT	57.614	33.333	0.00	0.00	0.00	4.49
2143	2205	6.801575	ACTTTTGAAACATATCCAACGTGTT	58.198	32.000	0.00	0.00	37.66	3.32
2156	2218	6.492007	TCCAACGTGTTAGTTTGTTACAAA	57.508	33.333	6.41	6.41	30.96	2.83
2157	2219	7.086230	TCCAACGTGTTAGTTTGTTACAAAT	57.914	32.000	13.84	6.01	30.96	2.32
2158	2220	8.206325	TCCAACGTGTTAGTTTGTTACAAATA	57.794	30.769	13.84	5.13	30.96	1.40
2159	2221	8.838365	TCCAACGTGTTAGTTTGTTACAAATAT	58.162	29.630	13.84	8.48	30.96	1.28
2160	2222	8.897809	CCAACGTGTTAGTTTGTTACAAATATG	58.102	33.333	13.84	6.70	30.96	1.78
2161	2223	8.414173	CAACGTGTTAGTTTGTTACAAATATGC	58.586	33.333	13.84	1.17	30.96	3.14
2162	2224	6.793203	ACGTGTTAGTTTGTTACAAATATGCG	59.207	34.615	13.84	14.51	0.00	4.73
2163	2225	6.793203	CGTGTTAGTTTGTTACAAATATGCGT	59.207	34.615	13.84	0.00	0.00	5.24
2164	2226	7.005857	CGTGTTAGTTTGTTACAAATATGCGTC	59.994	37.037	13.84	0.00	0.00	5.19
2165	2227	7.269724	GTGTTAGTTTGTTACAAATATGCGTCC	59.730	37.037	13.84	0.00	0.00	4.79
2166	2228	4.965062	AGTTTGTTACAAATATGCGTCCG	58.035	39.130	13.84	0.00	0.00	4.79
2167	2229	4.092816	GTTTGTTACAAATATGCGTCCGG	58.907	43.478	13.84	0.00	0.00	5.14
2168	2230	2.281517	TGTTACAAATATGCGTCCGGG	58.718	47.619	0.00	0.00	0.00	5.73
2169	2231	1.600485	GTTACAAATATGCGTCCGGGG	59.400	52.381	0.00	0.00	0.00	5.73
2170	2232	1.121378	TACAAATATGCGTCCGGGGA	58.879	50.000	0.00	0.00	0.00	4.81
2171	2233	0.472471	ACAAATATGCGTCCGGGGAT	59.528	50.000	0.00	0.00	0.00	3.85
2172	2234	1.695242	ACAAATATGCGTCCGGGGATA	59.305	47.619	0.00	0.00	0.00	2.59
2173	2235	2.304761	ACAAATATGCGTCCGGGGATAT	59.695	45.455	0.00	0.00	33.04	1.63
2174	2236	3.516300	ACAAATATGCGTCCGGGGATATA	59.484	43.478	0.00	0.00	31.65	0.86
2175	2237	4.020039	ACAAATATGCGTCCGGGGATATAA	60.020	41.667	0.00	0.00	31.65	0.98
2176	2238	5.123227	CAAATATGCGTCCGGGGATATAAT	58.877	41.667	0.00	0.00	31.65	1.28
2177	2239	2.981859	ATGCGTCCGGGGATATAATC	57.018	50.000	0.00	0.00	0.00	1.75
2189	2251	6.993902	CCGGGGATATAATCTACTACTCTCTC	59.006	46.154	0.00	0.00	0.00	3.20
2191	2253	7.147444	CGGGGATATAATCTACTACTCTCTCCT	60.147	44.444	0.00	0.00	0.00	3.69
2209	2271	8.651589	TCTCTCCTATCCATATTAATTGTCGT	57.348	34.615	0.00	0.00	0.00	4.34
2231	2293	6.029607	CGTTAATTTAGTACCAGACGTGCTA	58.970	40.000	0.00	0.00	38.51	3.49
2235	2297	1.624336	AGTACCAGACGTGCTACCAA	58.376	50.000	0.00	0.00	35.38	3.67
2243	2305	1.798813	GACGTGCTACCAAGTTTCCAG	59.201	52.381	0.00	0.00	33.76	3.86
2249	2311	4.820173	GTGCTACCAAGTTTCCAGTTACTT	59.180	41.667	0.00	0.00	35.06	2.24
2261	2323	4.124238	TCCAGTTACTTGGTCGAACAAAG	58.876	43.478	18.03	13.36	39.35	2.77
2267	2329	0.394488	TTGGTCGAACAAAGGCACCA	60.394	50.000	14.82	0.00	35.26	4.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	4.972733	TGTGCATTGGGCCGCAGT	62.973	61.111	4.74	0.00	43.89	4.40
95	96	0.320771	TCTCGAACAAGGCCAGCTTC	60.321	55.000	5.01	0.41	0.00	3.86
273	274	1.601419	TTCTGTAGTCGCCCCTTCCG	61.601	60.000	0.00	0.00	0.00	4.30
295	296	8.983724	GTCCATAACTGCTTATTATTCTCTGAC	58.016	37.037	0.00	0.00	0.00	3.51
423	424	1.442769	ACATCGTGCTAAGGTTGCAG	58.557	50.000	0.00	0.00	41.41	4.41
442	443	2.265367	TCATCTCCCTTGCACACCTTA	58.735	47.619	0.00	0.00	0.00	2.69
453	454	5.071370	GCATCAAATCTTCATCATCTCCCT	58.929	41.667	0.00	0.00	0.00	4.20
459	460	5.791336	AGCATGCATCAAATCTTCATCAT	57.209	34.783	21.98	0.00	0.00	2.45
511	512	2.813754	CCATTTTCGAGCTTCTGTCCAA	59.186	45.455	0.00	0.00	0.00	3.53
631	633	1.549203	GTCCAAACAGCCCACATGAT	58.451	50.000	0.00	0.00	0.00	2.45
643	645	7.568861	CGTTATATTATTGCGAGAGGTCCAAAC	60.569	40.741	0.00	0.00	0.00	2.93
835	837	3.144506	CAGCTCCACTTCTGTGTTCAAT	58.855	45.455	0.00	0.00	42.34	2.57
990	992	3.213206	TCTGTTTCCATGAGCACTTGT	57.787	42.857	0.00	0.00	0.00	3.16
1029	1031	2.655364	CGTCGCGAGTGCCATAGG	60.655	66.667	10.24	0.00	38.08	2.57
1074	1076	9.990360	AAGGCTAGCTCTTCTATTTCTAATAAC	57.010	33.333	15.72	0.00	0.00	1.89
1216	1224	1.202627	GCTGGTCATGAGGAAGCTAGG	60.203	57.143	14.15	0.00	0.00	3.02
1217	1225	1.537776	CGCTGGTCATGAGGAAGCTAG	60.538	57.143	17.50	6.10	0.00	3.42
1219	1227	1.220206	CGCTGGTCATGAGGAAGCT	59.780	57.895	17.50	0.00	0.00	3.74
1329	1337	9.614792	TCCTTATAGCAAAAGAAGGAAAGTATC	57.385	33.333	7.21	0.00	43.49	2.24
1569	1578	1.380524	AGACTGACCCGTGATCGTAG	58.619	55.000	0.00	0.00	35.01	3.51
1570	1579	2.696989	TAGACTGACCCGTGATCGTA	57.303	50.000	0.00	0.00	35.01	3.43
1573	1582	4.686554	GCATTATTAGACTGACCCGTGATC	59.313	45.833	0.00	0.00	0.00	2.92
1615	1644	5.348986	ACTACACTAGATAATTGCACGTGG	58.651	41.667	18.88	0.00	0.00	4.94
1674	1703	1.810755	GGGGCCAAAAGAGTACTTTCG	59.189	52.381	4.39	0.00	44.32	3.46
1707	1736	7.362662	TCTGAATTTAACTGTTCATCACAAGC	58.637	34.615	0.00	0.00	33.87	4.01
1845	1879	9.453572	AAAGCATTTTAGAGTGATGATTCTGTA	57.546	29.630	0.00	0.00	31.62	2.74
1902	1937	3.658757	TTGTAGAAGCCATGGCAAAAC	57.341	42.857	37.18	26.77	44.88	2.43
1911	1947	4.724399	TGAAAGGACATTTGTAGAAGCCA	58.276	39.130	0.00	0.00	0.00	4.75
1927	1963	7.383300	GTGATTGGAAAGTTTCATCTTGAAAGG	59.617	37.037	17.16	0.00	45.83	3.11
1946	1982	3.243805	TGGCAAATGTTGTGAGTGATTGG	60.244	43.478	0.00	0.00	0.00	3.16
2031	2067	3.197766	TCGAGCTCATATGAACTTGGGTT	59.802	43.478	19.05	0.85	38.52	4.11
2112	2174	7.315247	TGGATATGTTTCAAAAGTATCACGG	57.685	36.000	5.74	0.00	0.00	4.94
2113	2175	7.425309	CGTTGGATATGTTTCAAAAGTATCACG	59.575	37.037	5.74	4.57	0.00	4.35
2130	2192	7.966246	TGTAACAAACTAACACGTTGGATAT	57.034	32.000	0.00	0.00	0.00	1.63
2142	2204	6.402334	CCGGACGCATATTTGTAACAAACTAA	60.402	38.462	0.00	0.00	0.00	2.24
2143	2205	5.063691	CCGGACGCATATTTGTAACAAACTA	59.936	40.000	0.00	0.00	0.00	2.24
2156	2218	4.223953	AGATTATATCCCCGGACGCATAT	58.776	43.478	0.73	1.34	0.00	1.78
2157	2219	3.638860	AGATTATATCCCCGGACGCATA	58.361	45.455	0.73	0.00	0.00	3.14
2158	2220	2.467880	AGATTATATCCCCGGACGCAT	58.532	47.619	0.73	0.00	0.00	4.73
2159	2221	1.933021	AGATTATATCCCCGGACGCA	58.067	50.000	0.73	0.00	0.00	5.24
2160	2222	3.022406	AGTAGATTATATCCCCGGACGC	58.978	50.000	0.73	0.00	0.00	5.19
2161	2223	5.435291	AGTAGTAGATTATATCCCCGGACG	58.565	45.833	0.73	0.00	0.00	4.79
2162	2224	6.661777	AGAGTAGTAGATTATATCCCCGGAC	58.338	44.000	0.73	0.00	0.00	4.79
2163	2225	6.677521	AGAGAGTAGTAGATTATATCCCCGGA	59.322	42.308	0.73	0.00	0.00	5.14
2164	2226	6.902408	AGAGAGTAGTAGATTATATCCCCGG	58.098	44.000	0.00	0.00	0.00	5.73
2165	2227	6.993902	GGAGAGAGTAGTAGATTATATCCCCG	59.006	46.154	0.00	0.00	0.00	5.73
2166	2228	8.109560	AGGAGAGAGTAGTAGATTATATCCCC	57.890	42.308	0.00	0.00	0.00	4.81
2205	2267	5.220098	GCACGTCTGGTACTAAATTAACGAC	60.220	44.000	0.00	0.00	33.44	4.34
2206	2268	4.858692	GCACGTCTGGTACTAAATTAACGA	59.141	41.667	0.00	0.00	33.44	3.85
2209	2271	6.071447	TGGTAGCACGTCTGGTACTAAATTAA	60.071	38.462	13.12	0.00	46.45	1.40
2211	2273	4.221262	TGGTAGCACGTCTGGTACTAAATT	59.779	41.667	13.12	0.00	46.45	1.82
2221	2283	1.798813	GGAAACTTGGTAGCACGTCTG	59.201	52.381	4.39	0.00	0.00	3.51
2224	2286	1.140252	ACTGGAAACTTGGTAGCACGT	59.860	47.619	0.00	0.00	0.00	4.49
2235	2297	4.124970	GTTCGACCAAGTAACTGGAAACT	58.875	43.478	0.00	0.00	38.96	2.66
2243	2305	2.614983	TGCCTTTGTTCGACCAAGTAAC	59.385	45.455	0.00	0.00	0.00	2.50
2249	2311	1.098712	GTGGTGCCTTTGTTCGACCA	61.099	55.000	0.00	0.00	34.26	4.02
2251	2313	1.155424	TCGTGGTGCCTTTGTTCGAC	61.155	55.000	0.00	0.00	0.00	4.20

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.