Multiple sequence alignment - TraesCS1A01G296500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G296500 chr1A 100.000 3126 0 0 1 3126 491312944 491309819 0.000000e+00 5773
1 TraesCS1A01G296500 chr1B 92.495 1972 88 19 1 1950 528399023 528397090 0.000000e+00 2767
2 TraesCS1A01G296500 chr1B 88.432 925 54 22 1954 2845 528397053 528396149 0.000000e+00 1066
3 TraesCS1A01G296500 chr1B 87.410 278 34 1 2848 3124 473236221 473235944 5.030000e-83 318
4 TraesCS1A01G296500 chr1D 91.874 1969 90 20 1 1950 393928269 393930186 0.000000e+00 2686
5 TraesCS1A01G296500 chr1D 91.853 896 43 16 1957 2845 393930224 393931096 0.000000e+00 1223
6 TraesCS1A01G296500 chr7D 91.398 279 23 1 2847 3124 408469442 408469164 6.330000e-102 381
7 TraesCS1A01G296500 chr6D 91.039 279 23 2 2845 3121 20784991 20785269 2.940000e-100 375
8 TraesCS1A01G296500 chr2A 89.085 284 29 2 2843 3124 111919459 111919176 4.960000e-93 351
9 TraesCS1A01G296500 chr2A 88.070 285 26 6 2847 3124 46100912 46101195 6.460000e-87 331
10 TraesCS1A01G296500 chr2A 87.143 280 35 1 2848 3126 468321519 468321240 1.810000e-82 316
11 TraesCS1A01G296500 chr3A 88.256 281 30 2 2847 3124 711283245 711282965 1.800000e-87 333
12 TraesCS1A01G296500 chr4A 87.770 278 31 2 2848 3124 162427620 162427895 3.890000e-84 322
13 TraesCS1A01G296500 chr2B 86.477 281 36 2 2846 3124 23565503 23565223 1.090000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G296500 chr1A 491309819 491312944 3125 True 5773.0 5773 100.0000 1 3126 1 chr1A.!!$R1 3125
1 TraesCS1A01G296500 chr1B 528396149 528399023 2874 True 1916.5 2767 90.4635 1 2845 2 chr1B.!!$R2 2844
2 TraesCS1A01G296500 chr1D 393928269 393931096 2827 False 1954.5 2686 91.8635 1 2845 2 chr1D.!!$F1 2844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 99 0.971386 CCTTGCTTCCATTGCAACCT 59.029 50.000 0.00 0.0 44.24 3.5 F
726 728 1.202098 CGGCCGCCTATTTTGTGTTAC 60.202 52.381 14.67 0.0 0.00 2.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1777 0.179062 ACTGGATCTCAATCAGGCGC 60.179 55.0 0.0 0.0 33.21 6.53 R
2439 2527 0.249398 CAACCCTACCCCTCGAAGTG 59.751 60.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.453155 GTCACATGGCCGATTGAAGT 58.547 50.000 0.00 0.00 0.00 3.01
49 50 1.131126 GTCACATGGCCGATTGAAGTG 59.869 52.381 0.00 0.00 0.00 3.16
68 70 5.675684 AGTGAAACCTCCACACAAAAATT 57.324 34.783 0.00 0.00 37.80 1.82
79 81 3.252944 CACACAAAAATTGCCCAATTCCC 59.747 43.478 6.70 0.00 39.88 3.97
97 99 0.971386 CCTTGCTTCCATTGCAACCT 59.029 50.000 0.00 0.00 44.24 3.50
108 110 5.569355 TCCATTGCAACCTAGAGATGAAAA 58.431 37.500 0.00 0.00 0.00 2.29
178 180 1.873698 TTACACGACTCAAAGGCACC 58.126 50.000 0.00 0.00 0.00 5.01
196 198 5.071653 AGGCACCATTACCAAACAAAGAAAT 59.928 36.000 0.00 0.00 0.00 2.17
217 219 4.177537 TGAGAAACCAATCCAAAGTCCA 57.822 40.909 0.00 0.00 0.00 4.02
252 254 2.363359 CAAGCCCAAGACAGAAAAAGCT 59.637 45.455 0.00 0.00 0.00 3.74
266 268 2.475200 AAAGCTCACAAAAGACACGC 57.525 45.000 0.00 0.00 0.00 5.34
358 360 1.751437 GTGTCCATGGTAAGGCTTCC 58.249 55.000 12.58 5.89 0.00 3.46
381 383 4.439776 CGAAGCGAACACGATAATCATGTA 59.560 41.667 0.00 0.00 0.00 2.29
382 384 5.607570 CGAAGCGAACACGATAATCATGTAC 60.608 44.000 0.00 0.00 0.00 2.90
384 386 6.068473 AGCGAACACGATAATCATGTACTA 57.932 37.500 0.00 0.00 0.00 1.82
385 387 6.500910 AGCGAACACGATAATCATGTACTAA 58.499 36.000 0.00 0.00 0.00 2.24
386 388 7.145985 AGCGAACACGATAATCATGTACTAAT 58.854 34.615 0.00 0.00 0.00 1.73
387 389 8.294577 AGCGAACACGATAATCATGTACTAATA 58.705 33.333 0.00 0.00 0.00 0.98
388 390 8.908678 GCGAACACGATAATCATGTACTAATAA 58.091 33.333 0.00 0.00 0.00 1.40
476 478 4.776308 ACTCTTGACTATTTTACCCTCCGT 59.224 41.667 0.00 0.00 0.00 4.69
544 546 1.396648 CGCATTAACGCTCCATTCACA 59.603 47.619 0.00 0.00 0.00 3.58
582 584 3.358111 TTAATGGTGGCGGAGATTTCA 57.642 42.857 0.00 0.00 0.00 2.69
597 599 4.657013 AGATTTCAAGGTCTCCTTCCAAC 58.343 43.478 0.00 0.00 42.67 3.77
606 608 4.468153 AGGTCTCCTTCCAACACTAGATTC 59.532 45.833 0.00 0.00 0.00 2.52
607 609 4.223032 GGTCTCCTTCCAACACTAGATTCA 59.777 45.833 0.00 0.00 0.00 2.57
648 650 5.103290 TCACTCAAGTTTAATGCGTTTCC 57.897 39.130 0.00 0.00 0.00 3.13
708 710 4.259970 CGATCTCACAAAATCTAAGCACGG 60.260 45.833 0.00 0.00 0.00 4.94
726 728 1.202098 CGGCCGCCTATTTTGTGTTAC 60.202 52.381 14.67 0.00 0.00 2.50
727 729 1.202098 GGCCGCCTATTTTGTGTTACG 60.202 52.381 0.71 0.00 0.00 3.18
741 743 7.741027 TTTGTGTTACGGTCCAAAATACATA 57.259 32.000 4.31 0.00 0.00 2.29
946 950 3.419759 CCAAACGAACGAGGCCGG 61.420 66.667 0.00 0.00 40.78 6.13
947 951 4.084888 CAAACGAACGAGGCCGGC 62.085 66.667 21.18 21.18 40.78 6.13
971 975 2.355009 CCACAAGGCAAAGCGCAC 60.355 61.111 11.47 0.00 45.17 5.34
1017 1022 4.554036 GTCCTCGCAGCCCCCATC 62.554 72.222 0.00 0.00 0.00 3.51
1074 1079 1.224592 CAGGTCCAAATCCTCCCCG 59.775 63.158 0.00 0.00 32.37 5.73
1573 1578 2.989824 CGGCCCCGACGATATCCT 60.990 66.667 0.00 0.00 42.83 3.24
1577 1582 2.567049 CCCGACGATATCCTCCGC 59.433 66.667 0.00 0.00 0.00 5.54
1689 1694 2.745492 AGCCGCAAGAAGCAGAGC 60.745 61.111 0.00 0.00 46.13 4.09
1856 1868 0.317436 CAGCTACTCCTCATCGACGC 60.317 60.000 0.00 0.00 0.00 5.19
1859 1871 0.029567 CTACTCCTCATCGACGCCAC 59.970 60.000 0.00 0.00 0.00 5.01
1944 1968 2.335316 ACTTCAAAGCCGGTTACACA 57.665 45.000 1.90 0.00 0.00 3.72
1950 1974 1.989706 AAGCCGGTTACACAATTGGT 58.010 45.000 10.83 7.53 0.00 3.67
1951 1975 2.863132 AGCCGGTTACACAATTGGTA 57.137 45.000 10.83 6.55 0.00 3.25
1952 1976 2.429478 AGCCGGTTACACAATTGGTAC 58.571 47.619 10.83 2.04 0.00 3.34
2011 2068 5.717078 TCAGAAGATTTGCTGCTCATTTT 57.283 34.783 0.00 0.00 26.01 1.82
2014 2072 4.771054 AGAAGATTTGCTGCTCATTTTCCT 59.229 37.500 0.00 0.00 0.00 3.36
2022 2080 2.422832 CTGCTCATTTTCCTCTCTTGGC 59.577 50.000 0.00 0.00 0.00 4.52
2084 2162 7.504926 ACAATTATACTCCTACTTGGTTGGA 57.495 36.000 1.53 1.53 35.32 3.53
2096 2174 0.032952 TGGTTGGACTCTGTACGTGC 59.967 55.000 0.00 0.00 0.00 5.34
2097 2175 1.007336 GGTTGGACTCTGTACGTGCG 61.007 60.000 0.00 0.00 0.00 5.34
2098 2176 0.318445 GTTGGACTCTGTACGTGCGT 60.318 55.000 0.00 2.05 0.00 5.24
2099 2177 0.318360 TTGGACTCTGTACGTGCGTG 60.318 55.000 7.55 0.00 0.00 5.34
2100 2178 2.087009 GGACTCTGTACGTGCGTGC 61.087 63.158 7.55 6.68 0.00 5.34
2104 2182 1.545614 CTCTGTACGTGCGTGCGTTT 61.546 55.000 11.14 0.00 43.04 3.60
2105 2183 1.154908 CTGTACGTGCGTGCGTTTC 60.155 57.895 11.14 6.73 43.04 2.78
2106 2184 1.813212 CTGTACGTGCGTGCGTTTCA 61.813 55.000 11.14 10.06 43.04 2.69
2107 2185 1.273300 GTACGTGCGTGCGTTTCAA 59.727 52.632 11.14 0.00 43.04 2.69
2182 2264 1.003812 CCAATGTTTACCGGTGGGAGA 59.996 52.381 19.93 1.20 36.97 3.71
2228 2310 1.394572 CATGCACGATATACCCATGCG 59.605 52.381 0.00 0.00 39.18 4.73
2262 2344 1.333308 CATCACAGTTGTGGCGTGAAA 59.667 47.619 11.98 0.00 45.65 2.69
2278 2360 3.068732 CGTGAAAGGGAGAGCATCATCTA 59.931 47.826 0.00 0.00 37.82 1.98
2279 2361 4.262377 CGTGAAAGGGAGAGCATCATCTAT 60.262 45.833 0.00 0.00 37.82 1.98
2280 2362 5.619220 GTGAAAGGGAGAGCATCATCTATT 58.381 41.667 0.00 0.00 37.82 1.73
2282 2364 5.367644 TGAAAGGGAGAGCATCATCTATTCA 59.632 40.000 0.00 0.00 37.82 2.57
2283 2365 6.044054 TGAAAGGGAGAGCATCATCTATTCAT 59.956 38.462 0.00 0.00 37.82 2.57
2286 2368 5.188163 AGGGAGAGCATCATCTATTCATCTG 59.812 44.000 0.00 0.00 37.82 2.90
2287 2369 5.046448 GGGAGAGCATCATCTATTCATCTGT 60.046 44.000 0.00 0.00 37.82 3.41
2288 2370 6.101332 GGAGAGCATCATCTATTCATCTGTC 58.899 44.000 0.00 0.00 37.82 3.51
2289 2371 6.071221 GGAGAGCATCATCTATTCATCTGTCT 60.071 42.308 0.00 0.00 37.82 3.41
2290 2372 6.927416 AGAGCATCATCTATTCATCTGTCTC 58.073 40.000 0.00 0.00 37.82 3.36
2291 2373 6.040209 AGCATCATCTATTCATCTGTCTCC 57.960 41.667 0.00 0.00 0.00 3.71
2292 2374 5.781306 AGCATCATCTATTCATCTGTCTCCT 59.219 40.000 0.00 0.00 0.00 3.69
2293 2375 6.952938 AGCATCATCTATTCATCTGTCTCCTA 59.047 38.462 0.00 0.00 0.00 2.94
2439 2527 3.007542 GGGAGATGGGTGGGTTCC 58.992 66.667 0.00 0.00 0.00 3.62
2457 2545 0.908180 CCACTTCGAGGGGTAGGGTT 60.908 60.000 0.00 0.00 32.85 4.11
2489 2577 1.579084 TTTAACGGCGCCCACATGAC 61.579 55.000 23.46 0.00 0.00 3.06
2496 2584 2.125106 GCCCACATGACGGGTCTC 60.125 66.667 21.21 6.20 46.40 3.36
2547 2639 2.735857 GTGTGCGTGTACCCGTCC 60.736 66.667 0.00 0.00 0.00 4.79
2564 2656 3.793144 CGCGGCAGGAAGAGCAAC 61.793 66.667 0.00 0.00 0.00 4.17
2614 2706 1.810532 GGTGTGGACTCTAGAGCGG 59.189 63.158 19.97 0.00 0.00 5.52
2619 2711 2.716864 GACTCTAGAGCGGGCGAC 59.283 66.667 19.97 0.00 0.00 5.19
2735 2827 2.659016 CACCGAGAGCCTTCTGCA 59.341 61.111 0.00 0.00 44.83 4.41
2736 2828 1.447489 CACCGAGAGCCTTCTGCAG 60.447 63.158 7.63 7.63 44.83 4.41
2805 2901 2.181021 GCGCGCCACAGTACTAGT 59.819 61.111 23.24 0.00 0.00 2.57
2845 2941 4.093952 CGTGCTTGCTTCGCTGGG 62.094 66.667 0.00 0.00 0.00 4.45
2846 2942 2.980233 GTGCTTGCTTCGCTGGGT 60.980 61.111 0.00 0.00 0.00 4.51
2847 2943 2.203337 TGCTTGCTTCGCTGGGTT 60.203 55.556 0.00 0.00 0.00 4.11
2848 2944 1.827789 TGCTTGCTTCGCTGGGTTT 60.828 52.632 0.00 0.00 0.00 3.27
2849 2945 1.363807 GCTTGCTTCGCTGGGTTTT 59.636 52.632 0.00 0.00 0.00 2.43
2850 2946 0.249447 GCTTGCTTCGCTGGGTTTTT 60.249 50.000 0.00 0.00 0.00 1.94
2869 2965 1.989706 TTTTTCGGGGTGAAAGGGAG 58.010 50.000 0.00 0.00 46.72 4.30
2870 2966 0.848053 TTTTCGGGGTGAAAGGGAGT 59.152 50.000 0.00 0.00 46.72 3.85
2871 2967 0.848053 TTTCGGGGTGAAAGGGAGTT 59.152 50.000 0.00 0.00 41.59 3.01
2872 2968 0.848053 TTCGGGGTGAAAGGGAGTTT 59.152 50.000 0.00 0.00 32.37 2.66
2873 2969 0.848053 TCGGGGTGAAAGGGAGTTTT 59.152 50.000 0.00 0.00 0.00 2.43
2874 2970 2.056359 TCGGGGTGAAAGGGAGTTTTA 58.944 47.619 0.00 0.00 0.00 1.52
2875 2971 2.645797 TCGGGGTGAAAGGGAGTTTTAT 59.354 45.455 0.00 0.00 0.00 1.40
2876 2972 3.074836 TCGGGGTGAAAGGGAGTTTTATT 59.925 43.478 0.00 0.00 0.00 1.40
2877 2973 3.192633 CGGGGTGAAAGGGAGTTTTATTG 59.807 47.826 0.00 0.00 0.00 1.90
2878 2974 3.056107 GGGGTGAAAGGGAGTTTTATTGC 60.056 47.826 0.00 0.00 0.00 3.56
2879 2975 3.576550 GGGTGAAAGGGAGTTTTATTGCA 59.423 43.478 0.00 0.00 0.00 4.08
2880 2976 4.039852 GGGTGAAAGGGAGTTTTATTGCAA 59.960 41.667 0.00 0.00 0.00 4.08
2881 2977 5.230182 GGTGAAAGGGAGTTTTATTGCAAG 58.770 41.667 4.94 0.00 0.00 4.01
2882 2978 5.230182 GTGAAAGGGAGTTTTATTGCAAGG 58.770 41.667 4.94 0.00 0.00 3.61
2883 2979 4.898861 TGAAAGGGAGTTTTATTGCAAGGT 59.101 37.500 4.94 0.00 0.00 3.50
2884 2980 5.010617 TGAAAGGGAGTTTTATTGCAAGGTC 59.989 40.000 4.94 0.00 0.00 3.85
2885 2981 4.112634 AGGGAGTTTTATTGCAAGGTCA 57.887 40.909 4.94 0.00 0.00 4.02
2886 2982 3.826729 AGGGAGTTTTATTGCAAGGTCAC 59.173 43.478 4.94 0.00 0.00 3.67
2887 2983 3.572255 GGGAGTTTTATTGCAAGGTCACA 59.428 43.478 4.94 0.00 0.00 3.58
2888 2984 4.321230 GGGAGTTTTATTGCAAGGTCACAG 60.321 45.833 4.94 0.00 0.00 3.66
2889 2985 4.278419 GGAGTTTTATTGCAAGGTCACAGT 59.722 41.667 4.94 0.00 0.00 3.55
2890 2986 5.186996 AGTTTTATTGCAAGGTCACAGTG 57.813 39.130 4.94 0.00 0.00 3.66
2891 2987 4.644685 AGTTTTATTGCAAGGTCACAGTGT 59.355 37.500 4.94 0.00 0.00 3.55
2892 2988 5.127031 AGTTTTATTGCAAGGTCACAGTGTT 59.873 36.000 4.94 0.00 0.00 3.32
2893 2989 6.320164 AGTTTTATTGCAAGGTCACAGTGTTA 59.680 34.615 4.94 0.00 0.00 2.41
2894 2990 5.682943 TTATTGCAAGGTCACAGTGTTAC 57.317 39.130 4.94 0.00 0.00 2.50
2895 2991 2.700722 TGCAAGGTCACAGTGTTACA 57.299 45.000 9.69 0.00 0.00 2.41
2896 2992 2.992593 TGCAAGGTCACAGTGTTACAA 58.007 42.857 9.69 0.00 0.00 2.41
2897 2993 3.550820 TGCAAGGTCACAGTGTTACAAT 58.449 40.909 9.69 0.00 0.00 2.71
2898 2994 3.563808 TGCAAGGTCACAGTGTTACAATC 59.436 43.478 9.69 0.00 0.00 2.67
2899 2995 3.363970 GCAAGGTCACAGTGTTACAATCG 60.364 47.826 9.69 0.00 0.00 3.34
2900 2996 4.055360 CAAGGTCACAGTGTTACAATCGA 58.945 43.478 9.69 0.00 0.00 3.59
2901 2997 3.914312 AGGTCACAGTGTTACAATCGAG 58.086 45.455 9.69 0.00 0.00 4.04
2902 2998 3.572682 AGGTCACAGTGTTACAATCGAGA 59.427 43.478 9.69 0.00 0.00 4.04
2903 2999 3.921021 GGTCACAGTGTTACAATCGAGAG 59.079 47.826 9.69 0.00 0.00 3.20
2904 3000 3.921021 GTCACAGTGTTACAATCGAGAGG 59.079 47.826 2.65 0.00 0.00 3.69
2905 3001 2.668457 CACAGTGTTACAATCGAGAGGC 59.332 50.000 0.00 0.00 0.00 4.70
2906 3002 2.271800 CAGTGTTACAATCGAGAGGCC 58.728 52.381 0.00 0.00 0.00 5.19
2907 3003 1.899814 AGTGTTACAATCGAGAGGCCA 59.100 47.619 5.01 0.00 0.00 5.36
2908 3004 2.301870 AGTGTTACAATCGAGAGGCCAA 59.698 45.455 5.01 0.00 0.00 4.52
2909 3005 3.071479 GTGTTACAATCGAGAGGCCAAA 58.929 45.455 5.01 0.00 0.00 3.28
2910 3006 3.125316 GTGTTACAATCGAGAGGCCAAAG 59.875 47.826 5.01 0.00 0.00 2.77
2911 3007 2.678336 GTTACAATCGAGAGGCCAAAGG 59.322 50.000 5.01 0.00 0.00 3.11
2912 3008 0.693049 ACAATCGAGAGGCCAAAGGT 59.307 50.000 5.01 0.00 0.00 3.50
2913 3009 1.339151 ACAATCGAGAGGCCAAAGGTC 60.339 52.381 5.01 0.00 0.00 3.85
2914 3010 0.253327 AATCGAGAGGCCAAAGGTCC 59.747 55.000 5.01 0.00 0.00 4.46
2915 3011 0.618968 ATCGAGAGGCCAAAGGTCCT 60.619 55.000 5.01 0.00 33.26 3.85
2916 3012 0.836400 TCGAGAGGCCAAAGGTCCTT 60.836 55.000 5.01 0.00 31.35 3.36
2917 3013 0.902531 CGAGAGGCCAAAGGTCCTTA 59.097 55.000 5.01 0.00 31.35 2.69
2918 3014 1.278127 CGAGAGGCCAAAGGTCCTTAA 59.722 52.381 5.01 0.00 31.35 1.85
2919 3015 2.092914 CGAGAGGCCAAAGGTCCTTAAT 60.093 50.000 5.01 0.00 31.35 1.40
2920 3016 3.134081 CGAGAGGCCAAAGGTCCTTAATA 59.866 47.826 5.01 0.00 31.35 0.98
2921 3017 4.452825 GAGAGGCCAAAGGTCCTTAATAC 58.547 47.826 5.01 0.00 31.35 1.89
2922 3018 3.850173 AGAGGCCAAAGGTCCTTAATACA 59.150 43.478 5.01 0.00 31.35 2.29
2923 3019 4.478686 AGAGGCCAAAGGTCCTTAATACAT 59.521 41.667 5.01 0.00 31.35 2.29
2924 3020 4.536765 AGGCCAAAGGTCCTTAATACATG 58.463 43.478 5.01 0.00 0.00 3.21
2925 3021 3.636764 GGCCAAAGGTCCTTAATACATGG 59.363 47.826 4.04 8.89 0.00 3.66
2926 3022 4.278310 GCCAAAGGTCCTTAATACATGGT 58.722 43.478 15.98 0.00 0.00 3.55
2927 3023 4.097892 GCCAAAGGTCCTTAATACATGGTG 59.902 45.833 15.98 4.04 0.00 4.17
2928 3024 4.644685 CCAAAGGTCCTTAATACATGGTGG 59.355 45.833 4.04 1.61 0.00 4.61
2929 3025 5.505780 CAAAGGTCCTTAATACATGGTGGA 58.494 41.667 4.04 0.00 0.00 4.02
2930 3026 4.772886 AGGTCCTTAATACATGGTGGAC 57.227 45.455 0.00 0.00 42.11 4.02
2932 3028 3.463944 GTCCTTAATACATGGTGGACCG 58.536 50.000 0.00 0.00 38.31 4.79
2933 3029 3.133362 GTCCTTAATACATGGTGGACCGA 59.867 47.826 0.00 0.00 38.31 4.69
2934 3030 3.775866 TCCTTAATACATGGTGGACCGAA 59.224 43.478 0.00 0.00 39.43 4.30
2935 3031 4.410883 TCCTTAATACATGGTGGACCGAAT 59.589 41.667 0.00 0.00 39.43 3.34
2936 3032 4.515191 CCTTAATACATGGTGGACCGAATG 59.485 45.833 0.00 0.00 39.43 2.67
2937 3033 3.924114 AATACATGGTGGACCGAATGA 57.076 42.857 0.00 0.00 39.43 2.57
2938 3034 3.924114 ATACATGGTGGACCGAATGAA 57.076 42.857 0.00 0.00 39.43 2.57
2939 3035 1.821216 ACATGGTGGACCGAATGAAC 58.179 50.000 0.00 0.00 39.43 3.18
2940 3036 1.094785 CATGGTGGACCGAATGAACC 58.905 55.000 0.00 0.00 39.43 3.62
2941 3037 0.034477 ATGGTGGACCGAATGAACCC 60.034 55.000 0.00 0.00 39.43 4.11
2942 3038 1.377229 GGTGGACCGAATGAACCCA 59.623 57.895 0.00 0.00 0.00 4.51
2943 3039 0.958876 GGTGGACCGAATGAACCCAC 60.959 60.000 0.00 0.00 44.75 4.61
2944 3040 0.250553 GTGGACCGAATGAACCCACA 60.251 55.000 0.00 0.00 44.83 4.17
2945 3041 0.250553 TGGACCGAATGAACCCACAC 60.251 55.000 0.00 0.00 0.00 3.82
2946 3042 0.250553 GGACCGAATGAACCCACACA 60.251 55.000 0.00 0.00 0.00 3.72
2947 3043 1.156736 GACCGAATGAACCCACACAG 58.843 55.000 0.00 0.00 0.00 3.66
2948 3044 0.889186 ACCGAATGAACCCACACAGC 60.889 55.000 0.00 0.00 0.00 4.40
2949 3045 1.586154 CCGAATGAACCCACACAGCC 61.586 60.000 0.00 0.00 0.00 4.85
2950 3046 1.875963 GAATGAACCCACACAGCCG 59.124 57.895 0.00 0.00 0.00 5.52
2951 3047 0.889186 GAATGAACCCACACAGCCGT 60.889 55.000 0.00 0.00 0.00 5.68
2960 3056 4.268687 CACAGCCGTGGTTCTCTC 57.731 61.111 0.00 0.00 39.64 3.20
2961 3057 1.734477 CACAGCCGTGGTTCTCTCG 60.734 63.158 0.00 0.00 39.64 4.04
2962 3058 2.125912 CAGCCGTGGTTCTCTCGG 60.126 66.667 0.00 0.00 45.94 4.63
2963 3059 2.600769 AGCCGTGGTTCTCTCGGT 60.601 61.111 8.03 0.00 45.11 4.69
2964 3060 2.432628 GCCGTGGTTCTCTCGGTG 60.433 66.667 8.03 0.00 45.11 4.94
2965 3061 2.432628 CCGTGGTTCTCTCGGTGC 60.433 66.667 0.00 0.00 39.51 5.01
2966 3062 2.805353 CGTGGTTCTCTCGGTGCG 60.805 66.667 0.00 0.00 0.00 5.34
2967 3063 2.432628 GTGGTTCTCTCGGTGCGG 60.433 66.667 0.00 0.00 0.00 5.69
2968 3064 2.915659 TGGTTCTCTCGGTGCGGT 60.916 61.111 0.00 0.00 0.00 5.68
2969 3065 2.342648 GGTTCTCTCGGTGCGGTT 59.657 61.111 0.00 0.00 0.00 4.44
2970 3066 2.027625 GGTTCTCTCGGTGCGGTTG 61.028 63.158 0.00 0.00 0.00 3.77
2971 3067 1.300697 GTTCTCTCGGTGCGGTTGT 60.301 57.895 0.00 0.00 0.00 3.32
2972 3068 0.038892 GTTCTCTCGGTGCGGTTGTA 60.039 55.000 0.00 0.00 0.00 2.41
2973 3069 0.675083 TTCTCTCGGTGCGGTTGTAA 59.325 50.000 0.00 0.00 0.00 2.41
2974 3070 0.242825 TCTCTCGGTGCGGTTGTAAG 59.757 55.000 0.00 0.00 0.00 2.34
2975 3071 0.038526 CTCTCGGTGCGGTTGTAAGT 60.039 55.000 0.00 0.00 0.00 2.24
2976 3072 0.390124 TCTCGGTGCGGTTGTAAGTT 59.610 50.000 0.00 0.00 0.00 2.66
2977 3073 0.511221 CTCGGTGCGGTTGTAAGTTG 59.489 55.000 0.00 0.00 0.00 3.16
2978 3074 0.179078 TCGGTGCGGTTGTAAGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
2979 3075 0.233848 CGGTGCGGTTGTAAGTTGTC 59.766 55.000 0.00 0.00 0.00 3.18
2980 3076 1.301423 GGTGCGGTTGTAAGTTGTCA 58.699 50.000 0.00 0.00 0.00 3.58
2981 3077 1.671845 GGTGCGGTTGTAAGTTGTCAA 59.328 47.619 0.00 0.00 0.00 3.18
2982 3078 2.540157 GGTGCGGTTGTAAGTTGTCAAC 60.540 50.000 7.68 7.68 41.88 3.18
2987 3083 3.597377 GTTGTAAGTTGTCAACCGGTC 57.403 47.619 8.04 0.00 38.24 4.79
2988 3084 3.200483 GTTGTAAGTTGTCAACCGGTCT 58.800 45.455 8.04 0.00 38.24 3.85
2989 3085 2.828877 TGTAAGTTGTCAACCGGTCTG 58.171 47.619 8.04 9.09 0.00 3.51
2990 3086 1.529865 GTAAGTTGTCAACCGGTCTGC 59.470 52.381 8.04 0.75 0.00 4.26
2991 3087 0.107410 AAGTTGTCAACCGGTCTGCA 60.107 50.000 8.04 3.92 0.00 4.41
2992 3088 0.107410 AGTTGTCAACCGGTCTGCAA 60.107 50.000 8.04 10.59 0.00 4.08
2993 3089 0.028902 GTTGTCAACCGGTCTGCAAC 59.971 55.000 22.97 22.97 0.00 4.17
2994 3090 1.433053 TTGTCAACCGGTCTGCAACG 61.433 55.000 8.04 0.00 0.00 4.10
2995 3091 2.970324 TCAACCGGTCTGCAACGC 60.970 61.111 8.04 0.00 0.00 4.84
2996 3092 2.972505 CAACCGGTCTGCAACGCT 60.973 61.111 8.04 0.00 0.00 5.07
2997 3093 1.666553 CAACCGGTCTGCAACGCTA 60.667 57.895 8.04 0.00 0.00 4.26
2998 3094 1.019278 CAACCGGTCTGCAACGCTAT 61.019 55.000 8.04 0.00 0.00 2.97
2999 3095 0.321298 AACCGGTCTGCAACGCTATT 60.321 50.000 8.04 0.00 0.00 1.73
3000 3096 0.739813 ACCGGTCTGCAACGCTATTC 60.740 55.000 0.00 0.00 0.00 1.75
3001 3097 0.460284 CCGGTCTGCAACGCTATTCT 60.460 55.000 0.00 0.00 0.00 2.40
3002 3098 0.647410 CGGTCTGCAACGCTATTCTG 59.353 55.000 0.00 0.00 0.00 3.02
3003 3099 1.735700 CGGTCTGCAACGCTATTCTGA 60.736 52.381 0.00 0.00 0.00 3.27
3004 3100 1.661112 GGTCTGCAACGCTATTCTGAC 59.339 52.381 0.00 0.00 0.00 3.51
3005 3101 2.611518 GTCTGCAACGCTATTCTGACT 58.388 47.619 0.00 0.00 0.00 3.41
3006 3102 3.428999 GGTCTGCAACGCTATTCTGACTA 60.429 47.826 0.00 0.00 0.00 2.59
3007 3103 3.548268 GTCTGCAACGCTATTCTGACTAC 59.452 47.826 0.00 0.00 0.00 2.73
3008 3104 2.526077 TGCAACGCTATTCTGACTACG 58.474 47.619 0.00 0.00 0.00 3.51
3009 3105 1.852895 GCAACGCTATTCTGACTACGG 59.147 52.381 0.00 0.00 0.00 4.02
3010 3106 2.734492 GCAACGCTATTCTGACTACGGT 60.734 50.000 0.00 0.00 0.00 4.83
3011 3107 3.488047 GCAACGCTATTCTGACTACGGTA 60.488 47.826 0.00 0.00 0.00 4.02
3012 3108 4.792057 GCAACGCTATTCTGACTACGGTAT 60.792 45.833 0.00 0.00 0.00 2.73
3013 3109 5.561532 GCAACGCTATTCTGACTACGGTATA 60.562 44.000 0.00 0.00 0.00 1.47
3014 3110 6.432936 CAACGCTATTCTGACTACGGTATAA 58.567 40.000 0.00 0.00 0.00 0.98
3015 3111 6.814506 ACGCTATTCTGACTACGGTATAAT 57.185 37.500 0.00 0.00 0.00 1.28
3016 3112 7.211966 ACGCTATTCTGACTACGGTATAATT 57.788 36.000 0.00 0.00 0.00 1.40
3017 3113 7.655490 ACGCTATTCTGACTACGGTATAATTT 58.345 34.615 0.00 0.00 0.00 1.82
3018 3114 7.806960 ACGCTATTCTGACTACGGTATAATTTC 59.193 37.037 0.00 0.00 0.00 2.17
3019 3115 8.021973 CGCTATTCTGACTACGGTATAATTTCT 58.978 37.037 0.00 0.00 0.00 2.52
3020 3116 9.130312 GCTATTCTGACTACGGTATAATTTCTG 57.870 37.037 0.00 0.00 0.00 3.02
3023 3119 7.273320 TCTGACTACGGTATAATTTCTGAGG 57.727 40.000 0.00 0.00 0.00 3.86
3024 3120 6.832384 TCTGACTACGGTATAATTTCTGAGGT 59.168 38.462 0.00 0.00 0.00 3.85
3025 3121 7.994911 TCTGACTACGGTATAATTTCTGAGGTA 59.005 37.037 0.00 0.00 0.00 3.08
3026 3122 8.523915 TGACTACGGTATAATTTCTGAGGTAA 57.476 34.615 0.00 0.00 0.00 2.85
3027 3123 8.970020 TGACTACGGTATAATTTCTGAGGTAAA 58.030 33.333 0.00 0.00 0.00 2.01
3028 3124 9.807649 GACTACGGTATAATTTCTGAGGTAAAA 57.192 33.333 0.00 0.00 0.00 1.52
3032 3128 9.159364 ACGGTATAATTTCTGAGGTAAAAACTC 57.841 33.333 0.00 0.00 35.55 3.01
3033 3129 9.379791 CGGTATAATTTCTGAGGTAAAAACTCT 57.620 33.333 0.00 0.00 35.98 3.24
3039 3135 7.803279 TTTCTGAGGTAAAAACTCTCTTTCC 57.197 36.000 0.00 0.00 35.98 3.13
3040 3136 6.749036 TCTGAGGTAAAAACTCTCTTTCCT 57.251 37.500 0.00 0.00 35.98 3.36
3041 3137 7.138054 TCTGAGGTAAAAACTCTCTTTCCTT 57.862 36.000 0.00 0.00 35.98 3.36
3042 3138 7.217906 TCTGAGGTAAAAACTCTCTTTCCTTC 58.782 38.462 0.00 0.00 35.98 3.46
3043 3139 6.895782 TGAGGTAAAAACTCTCTTTCCTTCA 58.104 36.000 0.00 0.00 35.98 3.02
3044 3140 7.518188 TGAGGTAAAAACTCTCTTTCCTTCAT 58.482 34.615 0.00 0.00 35.98 2.57
3045 3141 7.661847 TGAGGTAAAAACTCTCTTTCCTTCATC 59.338 37.037 0.00 0.00 35.98 2.92
3046 3142 7.518188 AGGTAAAAACTCTCTTTCCTTCATCA 58.482 34.615 0.00 0.00 0.00 3.07
3047 3143 7.998964 AGGTAAAAACTCTCTTTCCTTCATCAA 59.001 33.333 0.00 0.00 0.00 2.57
3048 3144 8.076781 GGTAAAAACTCTCTTTCCTTCATCAAC 58.923 37.037 0.00 0.00 0.00 3.18
3049 3145 7.888250 AAAAACTCTCTTTCCTTCATCAACT 57.112 32.000 0.00 0.00 0.00 3.16
3050 3146 7.503521 AAAACTCTCTTTCCTTCATCAACTC 57.496 36.000 0.00 0.00 0.00 3.01
3051 3147 6.432403 AACTCTCTTTCCTTCATCAACTCT 57.568 37.500 0.00 0.00 0.00 3.24
3052 3148 6.432403 ACTCTCTTTCCTTCATCAACTCTT 57.568 37.500 0.00 0.00 0.00 2.85
3053 3149 6.836242 ACTCTCTTTCCTTCATCAACTCTTT 58.164 36.000 0.00 0.00 0.00 2.52
3054 3150 7.967908 ACTCTCTTTCCTTCATCAACTCTTTA 58.032 34.615 0.00 0.00 0.00 1.85
3055 3151 8.432805 ACTCTCTTTCCTTCATCAACTCTTTAA 58.567 33.333 0.00 0.00 0.00 1.52
3056 3152 9.447157 CTCTCTTTCCTTCATCAACTCTTTAAT 57.553 33.333 0.00 0.00 0.00 1.40
3057 3153 9.442047 TCTCTTTCCTTCATCAACTCTTTAATC 57.558 33.333 0.00 0.00 0.00 1.75
3058 3154 9.447157 CTCTTTCCTTCATCAACTCTTTAATCT 57.553 33.333 0.00 0.00 0.00 2.40
3059 3155 9.442047 TCTTTCCTTCATCAACTCTTTAATCTC 57.558 33.333 0.00 0.00 0.00 2.75
3060 3156 9.447157 CTTTCCTTCATCAACTCTTTAATCTCT 57.553 33.333 0.00 0.00 0.00 3.10
3063 3159 9.261035 TCCTTCATCAACTCTTTAATCTCTAGT 57.739 33.333 0.00 0.00 0.00 2.57
3067 3163 8.915036 TCATCAACTCTTTAATCTCTAGTACCC 58.085 37.037 0.00 0.00 0.00 3.69
3068 3164 8.696374 CATCAACTCTTTAATCTCTAGTACCCA 58.304 37.037 0.00 0.00 0.00 4.51
3069 3165 8.660295 TCAACTCTTTAATCTCTAGTACCCAA 57.340 34.615 0.00 0.00 0.00 4.12
3070 3166 9.268282 TCAACTCTTTAATCTCTAGTACCCAAT 57.732 33.333 0.00 0.00 0.00 3.16
3071 3167 9.319143 CAACTCTTTAATCTCTAGTACCCAATG 57.681 37.037 0.00 0.00 0.00 2.82
3072 3168 7.501844 ACTCTTTAATCTCTAGTACCCAATGC 58.498 38.462 0.00 0.00 0.00 3.56
3073 3169 6.827727 TCTTTAATCTCTAGTACCCAATGCC 58.172 40.000 0.00 0.00 0.00 4.40
3074 3170 5.562298 TTAATCTCTAGTACCCAATGCCC 57.438 43.478 0.00 0.00 0.00 5.36
3075 3171 2.561209 TCTCTAGTACCCAATGCCCA 57.439 50.000 0.00 0.00 0.00 5.36
3076 3172 2.116238 TCTCTAGTACCCAATGCCCAC 58.884 52.381 0.00 0.00 0.00 4.61
3077 3173 1.837439 CTCTAGTACCCAATGCCCACA 59.163 52.381 0.00 0.00 0.00 4.17
3078 3174 2.439507 CTCTAGTACCCAATGCCCACAT 59.560 50.000 0.00 0.00 38.49 3.21
3079 3175 2.172505 TCTAGTACCCAATGCCCACATG 59.827 50.000 0.00 0.00 36.36 3.21
3080 3176 0.684153 AGTACCCAATGCCCACATGC 60.684 55.000 0.00 0.00 36.36 4.06
3081 3177 0.684153 GTACCCAATGCCCACATGCT 60.684 55.000 0.00 0.00 36.36 3.79
3082 3178 0.683828 TACCCAATGCCCACATGCTG 60.684 55.000 0.00 0.00 36.36 4.41
3083 3179 1.683025 CCCAATGCCCACATGCTGA 60.683 57.895 0.00 0.00 36.36 4.26
3084 3180 1.046472 CCCAATGCCCACATGCTGAT 61.046 55.000 0.00 0.00 36.36 2.90
3085 3181 0.828022 CCAATGCCCACATGCTGATT 59.172 50.000 0.00 0.00 36.36 2.57
3086 3182 1.208535 CCAATGCCCACATGCTGATTT 59.791 47.619 0.00 0.00 36.36 2.17
3087 3183 2.276201 CAATGCCCACATGCTGATTTG 58.724 47.619 0.00 0.00 36.36 2.32
3088 3184 0.828022 ATGCCCACATGCTGATTTGG 59.172 50.000 0.00 0.00 34.35 3.28
3089 3185 0.542467 TGCCCACATGCTGATTTGGT 60.542 50.000 0.00 0.00 28.44 3.67
3090 3186 0.108520 GCCCACATGCTGATTTGGTG 60.109 55.000 0.00 0.00 28.44 4.17
3091 3187 1.548081 CCCACATGCTGATTTGGTGA 58.452 50.000 0.00 0.00 28.44 4.02
3092 3188 1.475280 CCCACATGCTGATTTGGTGAG 59.525 52.381 0.00 0.00 28.44 3.51
3093 3189 1.475280 CCACATGCTGATTTGGTGAGG 59.525 52.381 0.00 0.00 0.00 3.86
3094 3190 1.135199 CACATGCTGATTTGGTGAGGC 60.135 52.381 0.00 0.00 0.00 4.70
3095 3191 0.458669 CATGCTGATTTGGTGAGGCC 59.541 55.000 0.00 0.00 37.90 5.19
3104 3200 1.907739 TGGTGAGGCCATCAGTAGC 59.092 57.895 5.01 0.00 43.61 3.58
3111 3207 3.558674 GCCATCAGTAGCCAACACT 57.441 52.632 0.00 0.00 0.00 3.55
3112 3208 1.089920 GCCATCAGTAGCCAACACTG 58.910 55.000 0.00 0.00 43.92 3.66
3119 3215 2.808543 CAGTAGCCAACACTGAAAGACC 59.191 50.000 0.00 0.00 45.10 3.85
3120 3216 2.438021 AGTAGCCAACACTGAAAGACCA 59.562 45.455 0.00 0.00 37.43 4.02
3121 3217 1.972872 AGCCAACACTGAAAGACCAG 58.027 50.000 0.00 0.00 39.93 4.00
3123 3219 1.604278 GCCAACACTGAAAGACCAGTC 59.396 52.381 0.00 0.00 44.87 3.51
3124 3220 2.917933 CCAACACTGAAAGACCAGTCA 58.082 47.619 0.00 0.00 44.87 3.41
3125 3221 2.614057 CCAACACTGAAAGACCAGTCAC 59.386 50.000 0.00 0.00 44.87 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.809279 CCAAAGGAAGGTTTTGTTGCATC 59.191 43.478 0.00 0.00 34.51 3.91
15 16 3.387699 CCATGTGACCAAAGGAAGGTTTT 59.612 43.478 0.00 0.00 40.09 2.43
16 17 2.965147 CCATGTGACCAAAGGAAGGTTT 59.035 45.455 0.00 0.00 40.09 3.27
48 49 4.187694 GCAATTTTTGTGTGGAGGTTTCA 58.812 39.130 0.00 0.00 0.00 2.69
49 50 3.559655 GGCAATTTTTGTGTGGAGGTTTC 59.440 43.478 0.00 0.00 0.00 2.78
68 70 0.904394 GGAAGCAAGGGAATTGGGCA 60.904 55.000 0.00 0.00 39.47 5.36
108 110 6.376581 CCATCATTTTGCCTAGACTCTTCTTT 59.623 38.462 0.00 0.00 32.75 2.52
120 122 5.047802 CAGTTTACTGACCATCATTTTGCCT 60.048 40.000 3.80 0.00 46.59 4.75
150 152 5.470777 CCTTTGAGTCGTGTAAATAAACCCA 59.529 40.000 0.00 0.00 0.00 4.51
178 180 8.764287 GGTTTCTCATTTCTTTGTTTGGTAATG 58.236 33.333 0.00 0.00 0.00 1.90
196 198 3.888930 GTGGACTTTGGATTGGTTTCTCA 59.111 43.478 0.00 0.00 0.00 3.27
217 219 0.322546 GGCTTGGACTTCAATCCCGT 60.323 55.000 0.00 0.00 36.04 5.28
238 240 6.071952 TGTCTTTTGTGAGCTTTTTCTGTCTT 60.072 34.615 0.00 0.00 0.00 3.01
252 254 3.745975 CCTATTCAGCGTGTCTTTTGTGA 59.254 43.478 0.00 0.00 0.00 3.58
266 268 3.820467 TCAGTTTGTTGTGGCCTATTCAG 59.180 43.478 3.32 0.00 0.00 3.02
358 360 3.242944 ACATGATTATCGTGTTCGCTTCG 59.757 43.478 13.71 0.00 43.56 3.79
433 435 4.362677 AGTCATTACCTTCCTTAGCTGGA 58.637 43.478 0.00 0.00 0.00 3.86
497 499 3.772932 CACATTTGGATGCGCATAAAGT 58.227 40.909 25.40 14.34 36.72 2.66
544 546 9.793259 CACCATTAAAATGTACCCACTATCTAT 57.207 33.333 2.25 0.00 34.60 1.98
626 628 4.023536 GGGAAACGCATTAAACTTGAGTGA 60.024 41.667 0.00 0.00 0.00 3.41
648 650 2.279918 CCCGCTTCGATAACCCGG 60.280 66.667 0.00 0.00 38.71 5.73
675 677 0.525761 TGTGAGATCGCGATGACACA 59.474 50.000 33.72 33.72 33.99 3.72
708 710 1.202098 CCGTAACACAAAATAGGCGGC 60.202 52.381 0.00 0.00 0.00 6.53
789 791 9.632807 GTTGCATGTACCATAACAAAAGAATTA 57.367 29.630 0.00 0.00 32.02 1.40
835 837 4.407365 AGAATTTTAGGGAACACCACCTG 58.593 43.478 0.00 0.00 43.89 4.00
971 975 1.362355 GAAGCGGTGGGGTTTTGTG 59.638 57.895 0.00 0.00 36.25 3.33
1023 1028 1.367346 TCACCCAAGAAGGCCACATA 58.633 50.000 5.01 0.00 35.39 2.29
1772 1777 0.179062 ACTGGATCTCAATCAGGCGC 60.179 55.000 0.00 0.00 33.21 6.53
1797 1802 6.356186 AGTAAAGAGTTTCAGTTACCCGAT 57.644 37.500 0.00 0.00 0.00 4.18
1978 2035 6.854892 CAGCAAATCTTCTGAAAGTTGTACTG 59.145 38.462 0.00 8.68 33.95 2.74
1979 2036 6.514048 GCAGCAAATCTTCTGAAAGTTGTACT 60.514 38.462 0.00 0.00 33.95 2.73
1980 2037 5.626955 GCAGCAAATCTTCTGAAAGTTGTAC 59.373 40.000 11.41 0.00 33.95 2.90
2084 2162 2.428569 CGCACGCACGTACAGAGT 60.429 61.111 0.00 0.00 0.00 3.24
2096 2174 5.559694 AAAAGATTTGATTGAAACGCACG 57.440 34.783 0.00 0.00 0.00 5.34
2097 2175 9.862585 AATTAAAAAGATTTGATTGAAACGCAC 57.137 25.926 0.00 0.00 34.52 5.34
2152 2234 0.958091 TAAACATTGGCACGCAAGCT 59.042 45.000 0.00 0.00 45.62 3.74
2182 2264 1.719117 CGCAAACACACCAACGAGT 59.281 52.632 0.00 0.00 0.00 4.18
2262 2344 5.188163 CAGATGAATAGATGATGCTCTCCCT 59.812 44.000 0.00 0.00 0.00 4.20
2278 2360 7.337167 GGCAATCATATAGGAGACAGATGAAT 58.663 38.462 0.00 0.00 31.49 2.57
2279 2361 6.296087 GGGCAATCATATAGGAGACAGATGAA 60.296 42.308 0.00 0.00 31.49 2.57
2280 2362 5.188555 GGGCAATCATATAGGAGACAGATGA 59.811 44.000 0.00 0.00 32.02 2.92
2282 2364 4.161189 CGGGCAATCATATAGGAGACAGAT 59.839 45.833 0.00 0.00 0.00 2.90
2283 2365 3.511540 CGGGCAATCATATAGGAGACAGA 59.488 47.826 0.00 0.00 0.00 3.41
2286 2368 4.081420 ACATCGGGCAATCATATAGGAGAC 60.081 45.833 0.00 0.00 0.00 3.36
2287 2369 4.096681 ACATCGGGCAATCATATAGGAGA 58.903 43.478 0.00 0.00 0.00 3.71
2288 2370 4.478206 ACATCGGGCAATCATATAGGAG 57.522 45.455 0.00 0.00 0.00 3.69
2289 2371 4.908601 AACATCGGGCAATCATATAGGA 57.091 40.909 0.00 0.00 0.00 2.94
2290 2372 4.093408 CGAAACATCGGGCAATCATATAGG 59.907 45.833 0.00 0.00 0.00 2.57
2291 2373 4.690748 ACGAAACATCGGGCAATCATATAG 59.309 41.667 3.12 0.00 37.45 1.31
2292 2374 4.637276 ACGAAACATCGGGCAATCATATA 58.363 39.130 3.12 0.00 37.45 0.86
2293 2375 3.476552 ACGAAACATCGGGCAATCATAT 58.523 40.909 3.12 0.00 37.45 1.78
2384 2472 3.857854 GATGCGCCGAGTGCTGTG 61.858 66.667 4.18 0.00 40.03 3.66
2419 2507 3.883822 AACCCACCCATCTCCCGGT 62.884 63.158 0.00 0.00 0.00 5.28
2423 2511 3.835134 TGGAACCCACCCATCTCC 58.165 61.111 0.00 0.00 0.00 3.71
2439 2527 0.249398 CAACCCTACCCCTCGAAGTG 59.751 60.000 0.00 0.00 0.00 3.16
2457 2545 2.955660 GCCGTTAAATTCCCATGATCCA 59.044 45.455 0.00 0.00 0.00 3.41
2547 2639 3.793144 GTTGCTCTTCCTGCCGCG 61.793 66.667 0.00 0.00 0.00 6.46
2594 2686 1.025113 CGCTCTAGAGTCCACACCGA 61.025 60.000 20.75 0.00 0.00 4.69
2735 2827 1.216178 GTGCGCCATTTTCCATGCT 59.784 52.632 4.18 0.00 0.00 3.79
2736 2828 1.079956 TGTGCGCCATTTTCCATGC 60.080 52.632 4.18 0.00 0.00 4.06
2805 2901 2.435938 GCGAACGAATGGGCTGGA 60.436 61.111 0.00 0.00 0.00 3.86
2850 2946 1.215924 ACTCCCTTTCACCCCGAAAAA 59.784 47.619 0.00 0.00 43.01 1.94
2851 2947 0.848053 ACTCCCTTTCACCCCGAAAA 59.152 50.000 0.00 0.00 43.01 2.29
2852 2948 0.848053 AACTCCCTTTCACCCCGAAA 59.152 50.000 0.00 0.00 41.40 3.46
2853 2949 0.848053 AAACTCCCTTTCACCCCGAA 59.152 50.000 0.00 0.00 0.00 4.30
2854 2950 0.848053 AAAACTCCCTTTCACCCCGA 59.152 50.000 0.00 0.00 0.00 5.14
2855 2951 2.572209 TAAAACTCCCTTTCACCCCG 57.428 50.000 0.00 0.00 0.00 5.73
2856 2952 3.056107 GCAATAAAACTCCCTTTCACCCC 60.056 47.826 0.00 0.00 0.00 4.95
2857 2953 3.576550 TGCAATAAAACTCCCTTTCACCC 59.423 43.478 0.00 0.00 0.00 4.61
2858 2954 4.864704 TGCAATAAAACTCCCTTTCACC 57.135 40.909 0.00 0.00 0.00 4.02
2859 2955 5.221441 ACCTTGCAATAAAACTCCCTTTCAC 60.221 40.000 0.00 0.00 0.00 3.18
2860 2956 4.898861 ACCTTGCAATAAAACTCCCTTTCA 59.101 37.500 0.00 0.00 0.00 2.69
2861 2957 5.010617 TGACCTTGCAATAAAACTCCCTTTC 59.989 40.000 0.00 0.00 0.00 2.62
2862 2958 4.898861 TGACCTTGCAATAAAACTCCCTTT 59.101 37.500 0.00 0.00 0.00 3.11
2863 2959 4.280929 GTGACCTTGCAATAAAACTCCCTT 59.719 41.667 0.00 0.00 0.00 3.95
2864 2960 3.826729 GTGACCTTGCAATAAAACTCCCT 59.173 43.478 0.00 0.00 0.00 4.20
2865 2961 3.572255 TGTGACCTTGCAATAAAACTCCC 59.428 43.478 0.00 0.00 0.00 4.30
2866 2962 4.278419 ACTGTGACCTTGCAATAAAACTCC 59.722 41.667 0.00 0.00 0.00 3.85
2867 2963 5.215160 CACTGTGACCTTGCAATAAAACTC 58.785 41.667 0.32 0.00 0.00 3.01
2868 2964 4.644685 ACACTGTGACCTTGCAATAAAACT 59.355 37.500 15.86 0.00 0.00 2.66
2869 2965 4.932146 ACACTGTGACCTTGCAATAAAAC 58.068 39.130 15.86 0.00 0.00 2.43
2870 2966 5.590530 AACACTGTGACCTTGCAATAAAA 57.409 34.783 15.86 0.00 0.00 1.52
2871 2967 5.590663 TGTAACACTGTGACCTTGCAATAAA 59.409 36.000 15.86 0.00 0.00 1.40
2872 2968 5.126779 TGTAACACTGTGACCTTGCAATAA 58.873 37.500 15.86 0.00 0.00 1.40
2873 2969 4.709250 TGTAACACTGTGACCTTGCAATA 58.291 39.130 15.86 0.00 0.00 1.90
2874 2970 3.550820 TGTAACACTGTGACCTTGCAAT 58.449 40.909 15.86 0.00 0.00 3.56
2875 2971 2.992593 TGTAACACTGTGACCTTGCAA 58.007 42.857 15.86 0.00 0.00 4.08
2876 2972 2.700722 TGTAACACTGTGACCTTGCA 57.299 45.000 15.86 5.60 0.00 4.08
2877 2973 3.363970 CGATTGTAACACTGTGACCTTGC 60.364 47.826 15.86 2.89 0.00 4.01
2878 2974 4.055360 TCGATTGTAACACTGTGACCTTG 58.945 43.478 15.86 0.00 0.00 3.61
2879 2975 4.038763 TCTCGATTGTAACACTGTGACCTT 59.961 41.667 15.86 0.88 0.00 3.50
2880 2976 3.572682 TCTCGATTGTAACACTGTGACCT 59.427 43.478 15.86 1.05 0.00 3.85
2881 2977 3.909430 TCTCGATTGTAACACTGTGACC 58.091 45.455 15.86 2.18 0.00 4.02
2882 2978 3.921021 CCTCTCGATTGTAACACTGTGAC 59.079 47.826 15.86 3.64 0.00 3.67
2883 2979 3.614150 GCCTCTCGATTGTAACACTGTGA 60.614 47.826 15.86 0.00 0.00 3.58
2884 2980 2.668457 GCCTCTCGATTGTAACACTGTG 59.332 50.000 6.19 6.19 0.00 3.66
2885 2981 2.353803 GGCCTCTCGATTGTAACACTGT 60.354 50.000 0.00 0.00 0.00 3.55
2886 2982 2.271800 GGCCTCTCGATTGTAACACTG 58.728 52.381 0.00 0.00 0.00 3.66
2887 2983 1.899814 TGGCCTCTCGATTGTAACACT 59.100 47.619 3.32 0.00 0.00 3.55
2888 2984 2.380084 TGGCCTCTCGATTGTAACAC 57.620 50.000 3.32 0.00 0.00 3.32
2889 2985 3.334691 CTTTGGCCTCTCGATTGTAACA 58.665 45.455 3.32 0.00 0.00 2.41
2890 2986 2.678336 CCTTTGGCCTCTCGATTGTAAC 59.322 50.000 3.32 0.00 0.00 2.50
2891 2987 2.304761 ACCTTTGGCCTCTCGATTGTAA 59.695 45.455 3.32 0.00 0.00 2.41
2892 2988 1.906574 ACCTTTGGCCTCTCGATTGTA 59.093 47.619 3.32 0.00 0.00 2.41
2893 2989 0.693049 ACCTTTGGCCTCTCGATTGT 59.307 50.000 3.32 0.00 0.00 2.71
2894 2990 1.373570 GACCTTTGGCCTCTCGATTG 58.626 55.000 3.32 0.00 0.00 2.67
2895 2991 0.253327 GGACCTTTGGCCTCTCGATT 59.747 55.000 3.32 0.00 0.00 3.34
2896 2992 0.618968 AGGACCTTTGGCCTCTCGAT 60.619 55.000 3.32 0.00 0.00 3.59
2897 2993 0.836400 AAGGACCTTTGGCCTCTCGA 60.836 55.000 3.32 0.00 30.95 4.04
2898 2994 0.902531 TAAGGACCTTTGGCCTCTCG 59.097 55.000 13.11 0.00 30.95 4.04
2899 2995 3.653835 ATTAAGGACCTTTGGCCTCTC 57.346 47.619 13.11 0.00 30.95 3.20
2900 2996 3.850173 TGTATTAAGGACCTTTGGCCTCT 59.150 43.478 13.11 0.00 30.95 3.69
2901 2997 4.230745 TGTATTAAGGACCTTTGGCCTC 57.769 45.455 13.11 0.00 30.95 4.70
2902 2998 4.536765 CATGTATTAAGGACCTTTGGCCT 58.463 43.478 13.11 0.00 32.23 5.19
2903 2999 3.636764 CCATGTATTAAGGACCTTTGGCC 59.363 47.826 13.11 0.00 0.00 5.36
2904 3000 4.097892 CACCATGTATTAAGGACCTTTGGC 59.902 45.833 13.11 1.74 0.00 4.52
2905 3001 4.644685 CCACCATGTATTAAGGACCTTTGG 59.355 45.833 13.11 14.81 0.00 3.28
2906 3002 5.357032 GTCCACCATGTATTAAGGACCTTTG 59.643 44.000 13.11 3.11 39.61 2.77
2907 3003 5.506708 GTCCACCATGTATTAAGGACCTTT 58.493 41.667 13.11 0.00 39.61 3.11
2908 3004 5.112129 GTCCACCATGTATTAAGGACCTT 57.888 43.478 12.41 12.41 39.61 3.50
2909 3005 4.772886 GTCCACCATGTATTAAGGACCT 57.227 45.455 0.00 0.00 39.61 3.85
2911 3007 3.133362 TCGGTCCACCATGTATTAAGGAC 59.867 47.826 0.00 0.00 43.60 3.85
2912 3008 3.376636 TCGGTCCACCATGTATTAAGGA 58.623 45.455 0.00 0.00 35.14 3.36
2913 3009 3.830744 TCGGTCCACCATGTATTAAGG 57.169 47.619 0.00 0.00 35.14 2.69
2914 3010 5.364778 TCATTCGGTCCACCATGTATTAAG 58.635 41.667 0.00 0.00 35.14 1.85
2915 3011 5.360649 TCATTCGGTCCACCATGTATTAA 57.639 39.130 0.00 0.00 35.14 1.40
2916 3012 5.120399 GTTCATTCGGTCCACCATGTATTA 58.880 41.667 0.00 0.00 35.14 0.98
2917 3013 3.924114 TCATTCGGTCCACCATGTATT 57.076 42.857 0.00 0.00 35.14 1.89
2918 3014 3.541632 GTTCATTCGGTCCACCATGTAT 58.458 45.455 0.00 0.00 35.14 2.29
2919 3015 2.355310 GGTTCATTCGGTCCACCATGTA 60.355 50.000 0.00 0.00 35.14 2.29
2920 3016 1.613255 GGTTCATTCGGTCCACCATGT 60.613 52.381 0.00 0.00 35.14 3.21
2921 3017 1.094785 GGTTCATTCGGTCCACCATG 58.905 55.000 0.00 0.00 35.14 3.66
2922 3018 0.034477 GGGTTCATTCGGTCCACCAT 60.034 55.000 0.00 0.00 35.14 3.55
2923 3019 1.377229 GGGTTCATTCGGTCCACCA 59.623 57.895 0.00 0.00 35.14 4.17
2924 3020 0.958876 GTGGGTTCATTCGGTCCACC 60.959 60.000 0.00 0.00 41.28 4.61
2925 3021 0.250553 TGTGGGTTCATTCGGTCCAC 60.251 55.000 0.00 0.00 45.75 4.02
2926 3022 0.250553 GTGTGGGTTCATTCGGTCCA 60.251 55.000 0.00 0.00 0.00 4.02
2927 3023 0.250553 TGTGTGGGTTCATTCGGTCC 60.251 55.000 0.00 0.00 0.00 4.46
2928 3024 1.156736 CTGTGTGGGTTCATTCGGTC 58.843 55.000 0.00 0.00 0.00 4.79
2929 3025 0.889186 GCTGTGTGGGTTCATTCGGT 60.889 55.000 0.00 0.00 0.00 4.69
2930 3026 1.586154 GGCTGTGTGGGTTCATTCGG 61.586 60.000 0.00 0.00 0.00 4.30
2931 3027 1.875963 GGCTGTGTGGGTTCATTCG 59.124 57.895 0.00 0.00 0.00 3.34
2932 3028 0.889186 ACGGCTGTGTGGGTTCATTC 60.889 55.000 0.00 0.00 0.00 2.67
2933 3029 1.150536 ACGGCTGTGTGGGTTCATT 59.849 52.632 0.00 0.00 0.00 2.57
2934 3030 1.600636 CACGGCTGTGTGGGTTCAT 60.601 57.895 17.96 0.00 41.34 2.57
2935 3031 2.203139 CACGGCTGTGTGGGTTCA 60.203 61.111 17.96 0.00 41.34 3.18
2941 3037 0.946221 GAGAGAACCACGGCTGTGTG 60.946 60.000 23.77 16.97 44.92 3.82
2942 3038 1.367840 GAGAGAACCACGGCTGTGT 59.632 57.895 23.77 6.71 44.92 3.72
2943 3039 1.734477 CGAGAGAACCACGGCTGTG 60.734 63.158 19.25 19.25 46.00 3.66
2944 3040 2.651361 CGAGAGAACCACGGCTGT 59.349 61.111 0.00 0.00 0.00 4.40
2945 3041 2.125912 CCGAGAGAACCACGGCTG 60.126 66.667 0.00 0.00 40.19 4.85
2949 3045 2.805353 CGCACCGAGAGAACCACG 60.805 66.667 0.00 0.00 0.00 4.94
2950 3046 2.432628 CCGCACCGAGAGAACCAC 60.433 66.667 0.00 0.00 0.00 4.16
2951 3047 2.504274 AACCGCACCGAGAGAACCA 61.504 57.895 0.00 0.00 0.00 3.67
2952 3048 2.027625 CAACCGCACCGAGAGAACC 61.028 63.158 0.00 0.00 0.00 3.62
2953 3049 0.038892 TACAACCGCACCGAGAGAAC 60.039 55.000 0.00 0.00 0.00 3.01
2954 3050 0.675083 TTACAACCGCACCGAGAGAA 59.325 50.000 0.00 0.00 0.00 2.87
2955 3051 0.242825 CTTACAACCGCACCGAGAGA 59.757 55.000 0.00 0.00 0.00 3.10
2956 3052 0.038526 ACTTACAACCGCACCGAGAG 60.039 55.000 0.00 0.00 0.00 3.20
2957 3053 0.390124 AACTTACAACCGCACCGAGA 59.610 50.000 0.00 0.00 0.00 4.04
2958 3054 0.511221 CAACTTACAACCGCACCGAG 59.489 55.000 0.00 0.00 0.00 4.63
2959 3055 0.179078 ACAACTTACAACCGCACCGA 60.179 50.000 0.00 0.00 0.00 4.69
2960 3056 0.233848 GACAACTTACAACCGCACCG 59.766 55.000 0.00 0.00 0.00 4.94
2961 3057 1.301423 TGACAACTTACAACCGCACC 58.699 50.000 0.00 0.00 0.00 5.01
2962 3058 2.711885 GTTGACAACTTACAACCGCAC 58.288 47.619 11.18 0.00 39.97 5.34
2967 3063 3.001939 CAGACCGGTTGACAACTTACAAC 59.998 47.826 9.42 0.00 43.53 3.32
2968 3064 3.199677 CAGACCGGTTGACAACTTACAA 58.800 45.455 9.42 0.00 0.00 2.41
2969 3065 2.828877 CAGACCGGTTGACAACTTACA 58.171 47.619 9.42 0.00 0.00 2.41
2970 3066 1.529865 GCAGACCGGTTGACAACTTAC 59.470 52.381 9.42 7.53 0.00 2.34
2971 3067 1.139256 TGCAGACCGGTTGACAACTTA 59.861 47.619 9.42 0.00 0.00 2.24
2972 3068 0.107410 TGCAGACCGGTTGACAACTT 60.107 50.000 9.42 3.11 0.00 2.66
2973 3069 0.107410 TTGCAGACCGGTTGACAACT 60.107 50.000 9.42 0.00 0.00 3.16
2974 3070 0.028902 GTTGCAGACCGGTTGACAAC 59.971 55.000 23.17 23.17 0.00 3.32
2975 3071 1.433053 CGTTGCAGACCGGTTGACAA 61.433 55.000 9.42 10.87 0.00 3.18
2976 3072 1.885388 CGTTGCAGACCGGTTGACA 60.885 57.895 9.42 4.12 0.00 3.58
2977 3073 2.935955 CGTTGCAGACCGGTTGAC 59.064 61.111 9.42 0.90 0.00 3.18
2978 3074 2.089887 TAGCGTTGCAGACCGGTTGA 62.090 55.000 9.42 0.00 36.14 3.18
2979 3075 1.019278 ATAGCGTTGCAGACCGGTTG 61.019 55.000 9.42 10.53 36.14 3.77
2980 3076 0.321298 AATAGCGTTGCAGACCGGTT 60.321 50.000 9.42 0.00 36.14 4.44
2981 3077 0.739813 GAATAGCGTTGCAGACCGGT 60.740 55.000 6.92 6.92 38.48 5.28
2982 3078 0.460284 AGAATAGCGTTGCAGACCGG 60.460 55.000 0.00 0.00 0.00 5.28
2983 3079 0.647410 CAGAATAGCGTTGCAGACCG 59.353 55.000 0.00 0.00 0.00 4.79
2984 3080 1.661112 GTCAGAATAGCGTTGCAGACC 59.339 52.381 0.00 0.00 0.00 3.85
2985 3081 2.611518 AGTCAGAATAGCGTTGCAGAC 58.388 47.619 0.00 0.00 0.00 3.51
2986 3082 3.730963 CGTAGTCAGAATAGCGTTGCAGA 60.731 47.826 0.00 0.00 0.00 4.26
2987 3083 2.531912 CGTAGTCAGAATAGCGTTGCAG 59.468 50.000 0.00 0.00 0.00 4.41
2988 3084 2.526077 CGTAGTCAGAATAGCGTTGCA 58.474 47.619 0.00 0.00 0.00 4.08
2989 3085 1.852895 CCGTAGTCAGAATAGCGTTGC 59.147 52.381 0.00 0.00 0.00 4.17
2990 3086 3.146618 ACCGTAGTCAGAATAGCGTTG 57.853 47.619 0.00 0.00 0.00 4.10
2991 3087 6.624352 TTATACCGTAGTCAGAATAGCGTT 57.376 37.500 0.00 0.00 0.00 4.84
2992 3088 6.814506 ATTATACCGTAGTCAGAATAGCGT 57.185 37.500 0.00 0.00 0.00 5.07
2993 3089 8.021973 AGAAATTATACCGTAGTCAGAATAGCG 58.978 37.037 0.00 0.00 0.00 4.26
2994 3090 9.130312 CAGAAATTATACCGTAGTCAGAATAGC 57.870 37.037 0.00 0.00 0.00 2.97
2997 3093 8.361139 CCTCAGAAATTATACCGTAGTCAGAAT 58.639 37.037 0.00 0.00 0.00 2.40
2998 3094 7.341256 ACCTCAGAAATTATACCGTAGTCAGAA 59.659 37.037 0.00 0.00 0.00 3.02
2999 3095 6.832384 ACCTCAGAAATTATACCGTAGTCAGA 59.168 38.462 0.00 0.00 0.00 3.27
3000 3096 7.040473 ACCTCAGAAATTATACCGTAGTCAG 57.960 40.000 0.00 0.00 0.00 3.51
3001 3097 8.523915 TTACCTCAGAAATTATACCGTAGTCA 57.476 34.615 0.00 0.00 0.00 3.41
3002 3098 9.807649 TTTTACCTCAGAAATTATACCGTAGTC 57.192 33.333 0.00 0.00 0.00 2.59
3006 3102 9.159364 GAGTTTTTACCTCAGAAATTATACCGT 57.841 33.333 0.00 0.00 0.00 4.83
3007 3103 9.379791 AGAGTTTTTACCTCAGAAATTATACCG 57.620 33.333 0.00 0.00 0.00 4.02
3013 3109 8.851145 GGAAAGAGAGTTTTTACCTCAGAAATT 58.149 33.333 0.00 0.00 0.00 1.82
3014 3110 8.221251 AGGAAAGAGAGTTTTTACCTCAGAAAT 58.779 33.333 0.00 0.00 0.00 2.17
3015 3111 7.574607 AGGAAAGAGAGTTTTTACCTCAGAAA 58.425 34.615 0.00 0.00 0.00 2.52
3016 3112 7.138054 AGGAAAGAGAGTTTTTACCTCAGAA 57.862 36.000 0.00 0.00 0.00 3.02
3017 3113 6.749036 AGGAAAGAGAGTTTTTACCTCAGA 57.251 37.500 0.00 0.00 0.00 3.27
3018 3114 6.992715 TGAAGGAAAGAGAGTTTTTACCTCAG 59.007 38.462 0.00 0.00 0.00 3.35
3019 3115 6.895782 TGAAGGAAAGAGAGTTTTTACCTCA 58.104 36.000 0.00 0.00 0.00 3.86
3020 3116 7.661847 TGATGAAGGAAAGAGAGTTTTTACCTC 59.338 37.037 0.00 0.00 0.00 3.85
3021 3117 7.518188 TGATGAAGGAAAGAGAGTTTTTACCT 58.482 34.615 0.00 0.00 0.00 3.08
3022 3118 7.745620 TGATGAAGGAAAGAGAGTTTTTACC 57.254 36.000 0.00 0.00 0.00 2.85
3023 3119 8.841300 AGTTGATGAAGGAAAGAGAGTTTTTAC 58.159 33.333 0.00 0.00 0.00 2.01
3024 3120 8.980481 AGTTGATGAAGGAAAGAGAGTTTTTA 57.020 30.769 0.00 0.00 0.00 1.52
3025 3121 7.777440 AGAGTTGATGAAGGAAAGAGAGTTTTT 59.223 33.333 0.00 0.00 0.00 1.94
3026 3122 7.286313 AGAGTTGATGAAGGAAAGAGAGTTTT 58.714 34.615 0.00 0.00 0.00 2.43
3027 3123 6.836242 AGAGTTGATGAAGGAAAGAGAGTTT 58.164 36.000 0.00 0.00 0.00 2.66
3028 3124 6.432403 AGAGTTGATGAAGGAAAGAGAGTT 57.568 37.500 0.00 0.00 0.00 3.01
3029 3125 6.432403 AAGAGTTGATGAAGGAAAGAGAGT 57.568 37.500 0.00 0.00 0.00 3.24
3030 3126 8.839310 TTAAAGAGTTGATGAAGGAAAGAGAG 57.161 34.615 0.00 0.00 0.00 3.20
3031 3127 9.442047 GATTAAAGAGTTGATGAAGGAAAGAGA 57.558 33.333 0.00 0.00 0.00 3.10
3032 3128 9.447157 AGATTAAAGAGTTGATGAAGGAAAGAG 57.553 33.333 0.00 0.00 0.00 2.85
3033 3129 9.442047 GAGATTAAAGAGTTGATGAAGGAAAGA 57.558 33.333 0.00 0.00 0.00 2.52
3034 3130 9.447157 AGAGATTAAAGAGTTGATGAAGGAAAG 57.553 33.333 0.00 0.00 0.00 2.62
3037 3133 9.261035 ACTAGAGATTAAAGAGTTGATGAAGGA 57.739 33.333 0.00 0.00 0.00 3.36
3041 3137 8.915036 GGGTACTAGAGATTAAAGAGTTGATGA 58.085 37.037 0.00 0.00 0.00 2.92
3042 3138 8.696374 TGGGTACTAGAGATTAAAGAGTTGATG 58.304 37.037 0.00 0.00 0.00 3.07
3043 3139 8.840200 TGGGTACTAGAGATTAAAGAGTTGAT 57.160 34.615 0.00 0.00 0.00 2.57
3044 3140 8.660295 TTGGGTACTAGAGATTAAAGAGTTGA 57.340 34.615 0.00 0.00 0.00 3.18
3045 3141 9.319143 CATTGGGTACTAGAGATTAAAGAGTTG 57.681 37.037 0.00 0.00 0.00 3.16
3046 3142 7.988028 GCATTGGGTACTAGAGATTAAAGAGTT 59.012 37.037 0.00 0.00 0.00 3.01
3047 3143 7.419172 GGCATTGGGTACTAGAGATTAAAGAGT 60.419 40.741 0.00 0.00 0.00 3.24
3048 3144 6.931840 GGCATTGGGTACTAGAGATTAAAGAG 59.068 42.308 0.00 0.00 0.00 2.85
3049 3145 6.183361 GGGCATTGGGTACTAGAGATTAAAGA 60.183 42.308 0.00 0.00 0.00 2.52
3050 3146 5.998363 GGGCATTGGGTACTAGAGATTAAAG 59.002 44.000 0.00 0.00 0.00 1.85
3051 3147 5.430417 TGGGCATTGGGTACTAGAGATTAAA 59.570 40.000 0.00 0.00 0.00 1.52
3052 3148 4.972568 TGGGCATTGGGTACTAGAGATTAA 59.027 41.667 0.00 0.00 0.00 1.40
3053 3149 4.347000 GTGGGCATTGGGTACTAGAGATTA 59.653 45.833 0.00 0.00 0.00 1.75
3054 3150 3.136626 GTGGGCATTGGGTACTAGAGATT 59.863 47.826 0.00 0.00 0.00 2.40
3055 3151 2.706190 GTGGGCATTGGGTACTAGAGAT 59.294 50.000 0.00 0.00 0.00 2.75
3056 3152 2.116238 GTGGGCATTGGGTACTAGAGA 58.884 52.381 0.00 0.00 0.00 3.10
3057 3153 1.837439 TGTGGGCATTGGGTACTAGAG 59.163 52.381 0.00 0.00 0.00 2.43
3058 3154 1.959710 TGTGGGCATTGGGTACTAGA 58.040 50.000 0.00 0.00 0.00 2.43
3059 3155 2.575532 CATGTGGGCATTGGGTACTAG 58.424 52.381 0.00 0.00 31.99 2.57
3060 3156 1.409521 GCATGTGGGCATTGGGTACTA 60.410 52.381 0.00 0.00 31.99 1.82
3061 3157 0.684153 GCATGTGGGCATTGGGTACT 60.684 55.000 0.00 0.00 31.99 2.73
3062 3158 0.684153 AGCATGTGGGCATTGGGTAC 60.684 55.000 0.00 0.00 35.83 3.34
3063 3159 0.683828 CAGCATGTGGGCATTGGGTA 60.684 55.000 0.00 0.00 35.83 3.69
3064 3160 1.985662 CAGCATGTGGGCATTGGGT 60.986 57.895 0.00 0.00 35.83 4.51
3065 3161 1.046472 ATCAGCATGTGGGCATTGGG 61.046 55.000 0.00 0.00 37.40 4.12
3066 3162 0.828022 AATCAGCATGTGGGCATTGG 59.172 50.000 0.00 0.00 37.40 3.16
3067 3163 2.276201 CAAATCAGCATGTGGGCATTG 58.724 47.619 0.00 0.00 37.40 2.82
3068 3164 1.208535 CCAAATCAGCATGTGGGCATT 59.791 47.619 0.00 0.00 33.93 3.56
3069 3165 0.828022 CCAAATCAGCATGTGGGCAT 59.172 50.000 0.00 0.00 33.93 4.40
3070 3166 0.542467 ACCAAATCAGCATGTGGGCA 60.542 50.000 3.14 0.00 41.48 5.36
3071 3167 0.108520 CACCAAATCAGCATGTGGGC 60.109 55.000 3.14 0.00 41.48 5.36
3072 3168 1.475280 CTCACCAAATCAGCATGTGGG 59.525 52.381 3.14 0.00 41.48 4.61
3073 3169 1.475280 CCTCACCAAATCAGCATGTGG 59.525 52.381 0.00 0.00 42.78 4.17
3074 3170 1.135199 GCCTCACCAAATCAGCATGTG 60.135 52.381 0.00 0.00 37.40 3.21
3075 3171 1.180029 GCCTCACCAAATCAGCATGT 58.820 50.000 0.00 0.00 37.40 3.21
3076 3172 0.458669 GGCCTCACCAAATCAGCATG 59.541 55.000 0.00 0.00 38.86 4.06
3077 3173 2.892025 GGCCTCACCAAATCAGCAT 58.108 52.632 0.00 0.00 38.86 3.79
3078 3174 4.421365 GGCCTCACCAAATCAGCA 57.579 55.556 0.00 0.00 38.86 4.41
3087 3183 4.865865 GCTACTGATGGCCTCACC 57.134 61.111 3.32 0.00 39.84 4.02
3093 3189 1.089920 CAGTGTTGGCTACTGATGGC 58.910 55.000 10.27 0.00 46.52 4.40
3094 3190 2.768253 TCAGTGTTGGCTACTGATGG 57.232 50.000 13.22 0.00 46.92 3.51
3098 3194 2.808543 GGTCTTTCAGTGTTGGCTACTG 59.191 50.000 9.74 9.74 45.30 2.74
3099 3195 2.438021 TGGTCTTTCAGTGTTGGCTACT 59.562 45.455 0.01 0.00 0.00 2.57
3100 3196 2.808543 CTGGTCTTTCAGTGTTGGCTAC 59.191 50.000 0.00 0.00 0.00 3.58
3101 3197 2.438021 ACTGGTCTTTCAGTGTTGGCTA 59.562 45.455 0.00 0.00 45.27 3.93
3102 3198 1.212935 ACTGGTCTTTCAGTGTTGGCT 59.787 47.619 0.00 0.00 45.27 4.75
3103 3199 1.604278 GACTGGTCTTTCAGTGTTGGC 59.396 52.381 2.00 0.00 46.76 4.52
3104 3200 2.614057 GTGACTGGTCTTTCAGTGTTGG 59.386 50.000 2.00 0.00 46.76 3.77
3105 3201 3.951979 GTGACTGGTCTTTCAGTGTTG 57.048 47.619 2.00 0.00 46.76 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.