Multiple sequence alignment - TraesCS1A01G295200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G295200 chr1A 100.000 7758 0 0 1469 9226 490306895 490314652 0.000000e+00 14327.0
1 TraesCS1A01G295200 chr1A 100.000 1094 0 0 1 1094 490305427 490306520 0.000000e+00 2021.0
2 TraesCS1A01G295200 chr1A 94.476 706 32 5 1 704 432556196 432556896 0.000000e+00 1081.0
3 TraesCS1A01G295200 chr1A 94.468 705 34 2 1 704 505686353 505687053 0.000000e+00 1081.0
4 TraesCS1A01G295200 chr1A 97.436 39 1 0 8017 8055 80190787 80190749 5.980000e-07 67.6
5 TraesCS1A01G295200 chr1B 90.841 4433 240 69 1469 5836 526557416 526561747 0.000000e+00 5784.0
6 TraesCS1A01G295200 chr1B 90.114 1669 104 22 7122 8750 526563700 526565347 0.000000e+00 2111.0
7 TraesCS1A01G295200 chr1B 91.158 475 28 7 8747 9210 526565427 526565898 4.700000e-177 632.0
8 TraesCS1A01G295200 chr1B 86.260 393 21 8 703 1094 526557039 526557399 6.710000e-106 396.0
9 TraesCS1A01G295200 chr1B 90.000 290 20 4 6779 7061 526562620 526562907 5.260000e-97 366.0
10 TraesCS1A01G295200 chr1D 91.239 2511 104 36 1469 3912 394869110 394866649 0.000000e+00 3312.0
11 TraesCS1A01G295200 chr1D 94.275 2131 95 11 4125 6248 394866649 394864539 0.000000e+00 3234.0
12 TraesCS1A01G295200 chr1D 94.994 1718 67 10 6237 7942 394864344 394862634 0.000000e+00 2678.0
13 TraesCS1A01G295200 chr1D 90.175 285 26 2 8061 8343 394862484 394862200 4.070000e-98 370.0
14 TraesCS1A01G295200 chr1D 84.500 400 24 18 703 1094 394869496 394869127 2.450000e-95 361.0
15 TraesCS1A01G295200 chr1D 90.854 164 11 2 9067 9226 394712452 394712289 5.610000e-52 217.0
16 TraesCS1A01G295200 chr1D 77.778 135 16 8 8364 8498 394862212 394862092 4.620000e-08 71.3
17 TraesCS1A01G295200 chr5A 95.063 709 30 2 1 708 633115700 633114996 0.000000e+00 1110.0
18 TraesCS1A01G295200 chr5A 94.752 705 32 2 1 704 331380584 331379884 0.000000e+00 1092.0
19 TraesCS1A01G295200 chr6A 94.515 711 34 2 1 710 534678769 534679475 0.000000e+00 1092.0
20 TraesCS1A01G295200 chr6A 81.341 343 51 12 8069 8408 346433157 346433489 5.490000e-67 267.0
21 TraesCS1A01G295200 chr6A 90.000 90 5 4 6688 6777 66388078 66388163 7.570000e-21 113.0
22 TraesCS1A01G295200 chr7A 94.610 705 32 3 1 704 148510924 148511623 0.000000e+00 1086.0
23 TraesCS1A01G295200 chr3A 94.618 706 31 4 1 704 100895542 100896242 0.000000e+00 1086.0
24 TraesCS1A01G295200 chr2A 94.366 710 33 5 1 707 724279704 724278999 0.000000e+00 1083.0
25 TraesCS1A01G295200 chr2A 84.848 99 12 3 6685 6782 593656000 593655904 7.630000e-16 97.1
26 TraesCS1A01G295200 chr4A 94.350 708 34 3 1 707 59400053 59399351 0.000000e+00 1081.0
27 TraesCS1A01G295200 chr4A 84.746 59 6 3 8017 8075 27571935 27571990 1.000000e-03 56.5
28 TraesCS1A01G295200 chr6B 81.138 334 54 7 8075 8406 338017319 338016993 9.190000e-65 259.0
29 TraesCS1A01G295200 chr6B 97.500 40 1 0 8016 8055 545202835 545202874 1.660000e-07 69.4
30 TraesCS1A01G295200 chr6D 80.000 365 60 11 8075 8436 249997436 249997082 3.310000e-64 257.0
31 TraesCS1A01G295200 chr6D 97.500 40 1 0 8016 8055 363033165 363033204 1.660000e-07 69.4
32 TraesCS1A01G295200 chr3B 89.247 93 8 2 6683 6774 405228865 405228774 2.110000e-21 115.0
33 TraesCS1A01G295200 chr3B 88.764 89 9 1 6691 6779 621148535 621148622 3.520000e-19 108.0
34 TraesCS1A01G295200 chr5B 86.275 102 8 6 6688 6786 711236735 711236637 1.270000e-18 106.0
35 TraesCS1A01G295200 chr5B 100.000 39 0 0 8017 8055 683507090 683507128 1.290000e-08 73.1
36 TraesCS1A01G295200 chr2B 87.356 87 9 1 6691 6777 476461886 476461802 2.120000e-16 99.0
37 TraesCS1A01G295200 chr5D 86.207 87 10 2 6691 6776 516792225 516792140 9.860000e-15 93.5
38 TraesCS1A01G295200 chr5D 97.436 39 1 0 8017 8055 175781961 175781923 5.980000e-07 67.6
39 TraesCS1A01G295200 chr2D 86.207 87 10 2 6691 6777 402236245 402236329 9.860000e-15 93.5
40 TraesCS1A01G295200 chr2D 97.436 39 1 0 8017 8055 130726004 130726042 5.980000e-07 67.6
41 TraesCS1A01G295200 chr2D 89.583 48 5 0 8017 8064 75504934 75504887 2.780000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G295200 chr1A 490305427 490314652 9225 False 8174.00 14327 100.000000 1 9226 2 chr1A.!!$F3 9225
1 TraesCS1A01G295200 chr1A 432556196 432556896 700 False 1081.00 1081 94.476000 1 704 1 chr1A.!!$F1 703
2 TraesCS1A01G295200 chr1A 505686353 505687053 700 False 1081.00 1081 94.468000 1 704 1 chr1A.!!$F2 703
3 TraesCS1A01G295200 chr1B 526557039 526565898 8859 False 1857.80 5784 89.674600 703 9210 5 chr1B.!!$F1 8507
4 TraesCS1A01G295200 chr1D 394862092 394869496 7404 True 1671.05 3312 88.826833 703 8498 6 chr1D.!!$R2 7795
5 TraesCS1A01G295200 chr5A 633114996 633115700 704 True 1110.00 1110 95.063000 1 708 1 chr5A.!!$R2 707
6 TraesCS1A01G295200 chr5A 331379884 331380584 700 True 1092.00 1092 94.752000 1 704 1 chr5A.!!$R1 703
7 TraesCS1A01G295200 chr6A 534678769 534679475 706 False 1092.00 1092 94.515000 1 710 1 chr6A.!!$F3 709
8 TraesCS1A01G295200 chr7A 148510924 148511623 699 False 1086.00 1086 94.610000 1 704 1 chr7A.!!$F1 703
9 TraesCS1A01G295200 chr3A 100895542 100896242 700 False 1086.00 1086 94.618000 1 704 1 chr3A.!!$F1 703
10 TraesCS1A01G295200 chr2A 724278999 724279704 705 True 1083.00 1083 94.366000 1 707 1 chr2A.!!$R2 706
11 TraesCS1A01G295200 chr4A 59399351 59400053 702 True 1081.00 1081 94.350000 1 707 1 chr4A.!!$R1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 564 0.253044 CTTGACGGACATGATGGGGT 59.747 55.000 0.00 0.00 0.00 4.95 F
798 802 0.478507 AATATACCCACCAGGCCAGC 59.521 55.000 5.01 0.00 40.58 4.85 F
2191 2225 0.654683 GCAAGTAAGCTGATCGCCAG 59.345 55.000 6.02 1.00 45.67 4.85 F
2777 2825 0.741326 TGCGAGATCTGCAGGTACTC 59.259 55.000 15.13 17.37 37.44 2.59 F
3885 3970 0.758123 AAAGTGCACACCCCATTTGG 59.242 50.000 21.04 0.00 0.00 3.28 F
4729 4816 0.779997 AAGATTTCAGTGGGTGGGCT 59.220 50.000 0.00 0.00 0.00 5.19 F
4828 4918 0.109723 TTGGTAGCTGGTGTGGGAAC 59.890 55.000 0.00 0.00 0.00 3.62 F
5888 6042 1.132689 ACTCCAGAGGGTTCACTCCTT 60.133 52.381 0.00 0.00 38.26 3.36 F
6939 7332 2.271800 GAGTACTTGCATTCCGGACTG 58.728 52.381 17.06 17.06 0.00 3.51 F
7513 8646 1.629013 TTCTGAAGCACGCATCTACG 58.371 50.000 0.00 0.00 39.50 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2092 0.041833 TCCAACTCTCTAGGCTGGCT 59.958 55.000 9.28 9.28 32.45 4.75 R
2299 2346 0.179936 GGTAGCTGGAGCAGAGCAAT 59.820 55.000 0.00 0.00 45.16 3.56 R
3304 3382 1.016130 CACCTCGATCGCAAGCAAGT 61.016 55.000 11.09 0.00 37.18 3.16 R
4324 4411 0.179004 ACTGCATCCAACCAAACCGA 60.179 50.000 0.00 0.00 0.00 4.69 R
4766 4855 0.251165 ACATAACCAGGCACGCCTTT 60.251 50.000 8.15 3.94 45.70 3.11 R
6034 6188 0.326595 TGCCAATCCGTCTGCCTTAA 59.673 50.000 0.00 0.00 0.00 1.85 R
6101 6258 4.323104 GGACAGAAGCATAACCAGAAGTCT 60.323 45.833 0.00 0.00 0.00 3.24 R
7183 8315 1.434555 TTGAAGTAACCATGGACGCG 58.565 50.000 21.47 3.53 0.00 6.01 R
8007 9156 0.107410 TTGCAGTTCAACACGGAGGT 60.107 50.000 0.00 0.00 0.00 3.85 R
8987 10294 0.037697 ACGTCGCAACTGGCAAGATA 60.038 50.000 0.00 0.00 45.17 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.012975 AGGTGAGAAGAGAAAGAGATTTGCT 59.987 40.000 0.00 0.00 0.00 3.91
73 74 2.930826 AGAAAGGATGTGGAACGTGT 57.069 45.000 0.00 0.00 42.39 4.49
92 93 4.432712 GTGTTTTTGGTGTGCTTCAATCT 58.567 39.130 0.00 0.00 0.00 2.40
164 165 1.028868 GGGAGGTGATGACTGCTTGC 61.029 60.000 0.00 0.00 0.00 4.01
267 268 1.133809 TAAGCCCCTGCACCAAGACT 61.134 55.000 0.00 0.00 41.13 3.24
562 564 0.253044 CTTGACGGACATGATGGGGT 59.747 55.000 0.00 0.00 0.00 4.95
644 647 4.141711 CGACTCCAAATCCCTATCCAAAGA 60.142 45.833 0.00 0.00 0.00 2.52
653 657 8.534496 CAAATCCCTATCCAAAGAGACAAAAAT 58.466 33.333 0.00 0.00 0.00 1.82
656 660 8.158025 TCCCTATCCAAAGAGACAAAAATAGA 57.842 34.615 0.00 0.00 0.00 1.98
683 687 4.303993 ACGTCCGTTTGGGGTCGG 62.304 66.667 3.58 0.00 46.93 4.79
684 688 4.303993 CGTCCGTTTGGGGTCGGT 62.304 66.667 3.64 0.00 45.88 4.69
685 689 2.357881 GTCCGTTTGGGGTCGGTC 60.358 66.667 3.64 0.00 45.88 4.79
686 690 3.993584 TCCGTTTGGGGTCGGTCG 61.994 66.667 3.64 0.00 45.88 4.79
746 750 2.287308 CGTCGCATTCCAGTTTCCAAAA 60.287 45.455 0.00 0.00 0.00 2.44
747 751 3.712187 GTCGCATTCCAGTTTCCAAAAA 58.288 40.909 0.00 0.00 0.00 1.94
792 796 1.336887 CGGAGCGAATATACCCACCAG 60.337 57.143 0.00 0.00 0.00 4.00
793 797 1.002087 GGAGCGAATATACCCACCAGG 59.998 57.143 0.00 0.00 43.78 4.45
796 800 0.762418 CGAATATACCCACCAGGCCA 59.238 55.000 5.01 0.00 40.58 5.36
797 801 1.270839 CGAATATACCCACCAGGCCAG 60.271 57.143 5.01 0.00 40.58 4.85
798 802 0.478507 AATATACCCACCAGGCCAGC 59.521 55.000 5.01 0.00 40.58 4.85
799 803 0.697511 ATATACCCACCAGGCCAGCA 60.698 55.000 5.01 0.00 40.58 4.41
800 804 1.632018 TATACCCACCAGGCCAGCAC 61.632 60.000 5.01 0.00 40.58 4.40
976 989 2.854032 CCACCACCACCCTCCACT 60.854 66.667 0.00 0.00 0.00 4.00
977 990 2.750350 CACCACCACCCTCCACTC 59.250 66.667 0.00 0.00 0.00 3.51
979 992 3.706373 CCACCACCCTCCACTCCG 61.706 72.222 0.00 0.00 0.00 4.63
980 993 4.394712 CACCACCCTCCACTCCGC 62.395 72.222 0.00 0.00 0.00 5.54
981 994 4.640690 ACCACCCTCCACTCCGCT 62.641 66.667 0.00 0.00 0.00 5.52
982 995 3.775654 CCACCCTCCACTCCGCTC 61.776 72.222 0.00 0.00 0.00 5.03
983 996 4.135153 CACCCTCCACTCCGCTCG 62.135 72.222 0.00 0.00 0.00 5.03
984 997 4.361971 ACCCTCCACTCCGCTCGA 62.362 66.667 0.00 0.00 0.00 4.04
985 998 3.827898 CCCTCCACTCCGCTCGAC 61.828 72.222 0.00 0.00 0.00 4.20
986 999 3.827898 CCTCCACTCCGCTCGACC 61.828 72.222 0.00 0.00 0.00 4.79
987 1000 4.180946 CTCCACTCCGCTCGACCG 62.181 72.222 0.00 0.00 0.00 4.79
2061 2092 0.966179 TCTTTGTCTGCACCGCTAGA 59.034 50.000 0.00 0.00 0.00 2.43
2062 2093 1.067565 TCTTTGTCTGCACCGCTAGAG 60.068 52.381 0.00 0.00 0.00 2.43
2063 2094 0.670546 TTTGTCTGCACCGCTAGAGC 60.671 55.000 0.00 0.00 37.78 4.09
2064 2095 2.202810 GTCTGCACCGCTAGAGCC 60.203 66.667 0.00 0.00 37.91 4.70
2142 2173 3.573967 CCAAATATGGCCCTCGCTTAAAT 59.426 43.478 0.00 0.00 40.58 1.40
2151 2182 3.377172 GCCCTCGCTTAAATTTGAAGCTA 59.623 43.478 15.06 4.98 45.84 3.32
2152 2183 4.730903 GCCCTCGCTTAAATTTGAAGCTAC 60.731 45.833 15.06 0.00 45.84 3.58
2153 2184 4.201920 CCCTCGCTTAAATTTGAAGCTACC 60.202 45.833 15.06 0.00 45.84 3.18
2158 2192 6.091713 TCGCTTAAATTTGAAGCTACCACTAC 59.908 38.462 15.06 0.00 45.84 2.73
2190 2224 0.744414 GGCAAGTAAGCTGATCGCCA 60.744 55.000 8.99 0.00 40.39 5.69
2191 2225 0.654683 GCAAGTAAGCTGATCGCCAG 59.345 55.000 6.02 1.00 45.67 4.85
2206 2240 1.539388 CGCCAGTTTGCCATAACTTGA 59.461 47.619 0.00 0.00 36.24 3.02
2272 2319 5.220739 CCATTCCAACTAGCTTTGATCTTCG 60.221 44.000 0.00 0.00 0.00 3.79
2426 2473 5.416271 TGTTCCCACTGGACTTAATCTAC 57.584 43.478 0.00 0.00 41.57 2.59
2480 2527 3.553828 TGTGGGGAATCGAGGTTATTC 57.446 47.619 0.00 0.00 33.44 1.75
2529 2577 6.530887 TGTGACAGAAAACATTGACATTGTTG 59.469 34.615 14.65 7.23 37.38 3.33
2548 2596 9.650539 CATTGTTGTTTAATAATGTCATTCCCA 57.349 29.630 0.07 0.00 39.28 4.37
2559 2607 6.636454 AATGTCATTCCCACTTACCTAAGA 57.364 37.500 0.00 0.00 37.08 2.10
2560 2608 6.831664 ATGTCATTCCCACTTACCTAAGAT 57.168 37.500 0.00 0.00 37.08 2.40
2561 2609 6.235231 TGTCATTCCCACTTACCTAAGATC 57.765 41.667 0.00 0.00 37.08 2.75
2562 2610 5.964477 TGTCATTCCCACTTACCTAAGATCT 59.036 40.000 0.00 0.00 37.08 2.75
2575 2623 8.827177 TTACCTAAGATCTATTTATGCCAACG 57.173 34.615 0.00 0.00 0.00 4.10
2577 2625 6.929606 ACCTAAGATCTATTTATGCCAACGAC 59.070 38.462 0.00 0.00 0.00 4.34
2651 2699 5.640732 CCAGAACTTGGTGAAATTTATCCG 58.359 41.667 0.00 0.00 42.41 4.18
2702 2750 2.032620 GTGGACTCAGATACCGGTGAT 58.967 52.381 19.93 6.82 0.00 3.06
2777 2825 0.741326 TGCGAGATCTGCAGGTACTC 59.259 55.000 15.13 17.37 37.44 2.59
2780 2828 2.210961 CGAGATCTGCAGGTACTCGTA 58.789 52.381 30.19 9.21 43.19 3.43
2792 2840 7.718525 TGCAGGTACTCGTATTTTGTATATGA 58.281 34.615 0.00 0.00 34.60 2.15
2859 2908 9.369904 CTTAAAATAGTGCAATTAAGTGCCATT 57.630 29.630 23.74 16.68 44.26 3.16
2865 2914 3.253230 GCAATTAAGTGCCATTGACACC 58.747 45.455 16.81 0.00 38.87 4.16
2866 2915 3.848726 CAATTAAGTGCCATTGACACCC 58.151 45.455 0.00 0.00 38.87 4.61
2867 2916 2.666272 TTAAGTGCCATTGACACCCA 57.334 45.000 0.00 0.00 38.87 4.51
2876 2926 3.498397 GCCATTGACACCCAGTAATATCG 59.502 47.826 0.00 0.00 0.00 2.92
2884 2934 5.597806 ACACCCAGTAATATCGTGTATGTG 58.402 41.667 0.00 0.00 35.97 3.21
2886 2936 3.994392 CCCAGTAATATCGTGTATGTGCC 59.006 47.826 0.00 0.00 0.00 5.01
2887 2937 4.502431 CCCAGTAATATCGTGTATGTGCCA 60.502 45.833 0.00 0.00 0.00 4.92
2888 2938 5.237815 CCAGTAATATCGTGTATGTGCCAT 58.762 41.667 0.00 0.00 0.00 4.40
2891 2941 7.222805 CCAGTAATATCGTGTATGTGCCATATC 59.777 40.741 0.00 0.00 0.00 1.63
2894 2944 7.543947 AATATCGTGTATGTGCCATATCATG 57.456 36.000 0.00 0.00 0.00 3.07
2895 2945 4.335400 TCGTGTATGTGCCATATCATGT 57.665 40.909 0.00 0.00 0.00 3.21
2896 2946 4.057432 TCGTGTATGTGCCATATCATGTG 58.943 43.478 0.00 0.00 0.00 3.21
2897 2947 4.057432 CGTGTATGTGCCATATCATGTGA 58.943 43.478 0.00 0.00 0.00 3.58
2898 2948 4.511082 CGTGTATGTGCCATATCATGTGAA 59.489 41.667 0.00 0.00 0.00 3.18
2899 2949 5.333568 CGTGTATGTGCCATATCATGTGAAG 60.334 44.000 0.00 0.00 0.00 3.02
2900 2950 4.516321 TGTATGTGCCATATCATGTGAAGC 59.484 41.667 0.00 0.00 0.00 3.86
2901 2951 3.286329 TGTGCCATATCATGTGAAGCT 57.714 42.857 0.00 0.00 0.00 3.74
2902 2952 3.623703 TGTGCCATATCATGTGAAGCTT 58.376 40.909 0.00 0.00 0.00 3.74
2903 2953 3.628942 TGTGCCATATCATGTGAAGCTTC 59.371 43.478 19.89 19.89 0.00 3.86
2904 2954 3.881688 GTGCCATATCATGTGAAGCTTCT 59.118 43.478 26.09 8.35 0.00 2.85
2905 2955 4.337555 GTGCCATATCATGTGAAGCTTCTT 59.662 41.667 26.09 9.37 0.00 2.52
2906 2956 4.951715 TGCCATATCATGTGAAGCTTCTTT 59.048 37.500 26.09 9.02 0.00 2.52
2907 2957 5.163591 TGCCATATCATGTGAAGCTTCTTTG 60.164 40.000 26.09 19.21 0.00 2.77
2908 2958 5.163581 GCCATATCATGTGAAGCTTCTTTGT 60.164 40.000 26.09 10.57 0.00 2.83
2909 2959 6.626623 GCCATATCATGTGAAGCTTCTTTGTT 60.627 38.462 26.09 16.59 0.00 2.83
3100 3150 9.884814 ACAGGTATATAATTGGAGACTTCTAGT 57.115 33.333 0.00 0.00 0.00 2.57
3112 3162 8.155821 TGGAGACTTCTAGTAATGTCTATTCG 57.844 38.462 0.00 0.00 39.53 3.34
3193 3271 8.407457 TGTAGAGTTCTAACTAAATTGCATCG 57.593 34.615 0.00 0.00 39.88 3.84
3256 3334 2.822561 TGGCAAATGGTTAATCAGCGAA 59.177 40.909 0.00 0.00 0.00 4.70
3304 3382 1.748493 GGTCATGGCGCTATTTGGAAA 59.252 47.619 7.64 0.00 0.00 3.13
3399 3477 6.782298 CAGGTTATCTGAACTATGCATCTG 57.218 41.667 0.19 0.00 46.18 2.90
3400 3478 6.286758 CAGGTTATCTGAACTATGCATCTGT 58.713 40.000 0.19 0.11 46.18 3.41
3549 3627 7.041030 TGCGACACAATAAGGTAAGAAAAATGA 60.041 33.333 0.00 0.00 0.00 2.57
3571 3656 7.423844 TGAGGATTTCTCTAGCTCACATTAA 57.576 36.000 0.00 0.00 42.86 1.40
3620 3705 3.541632 TCTATTTTGCACCTCCGGATTC 58.458 45.455 3.57 0.00 0.00 2.52
3621 3706 2.514458 ATTTTGCACCTCCGGATTCT 57.486 45.000 3.57 0.00 0.00 2.40
3622 3707 2.286365 TTTTGCACCTCCGGATTCTT 57.714 45.000 3.57 0.00 0.00 2.52
3626 3711 1.066430 TGCACCTCCGGATTCTTGTAC 60.066 52.381 3.57 0.00 0.00 2.90
3631 3716 3.069729 ACCTCCGGATTCTTGTACTATGC 59.930 47.826 3.57 0.00 0.00 3.14
3721 3806 0.900647 AGCGAAGACCAGGTGCTACT 60.901 55.000 0.00 0.00 33.37 2.57
3843 3928 3.006430 TCAGAACCTACAGCAACGAATGA 59.994 43.478 0.00 0.00 0.00 2.57
3880 3965 2.017668 ATCCCAAAGTGCACACCCCA 62.018 55.000 21.04 0.00 0.00 4.96
3884 3969 1.540797 CCAAAGTGCACACCCCATTTG 60.541 52.381 21.04 18.02 0.00 2.32
3885 3970 0.758123 AAAGTGCACACCCCATTTGG 59.242 50.000 21.04 0.00 0.00 3.28
3891 3976 2.175202 GCACACCCCATTTGGAATACA 58.825 47.619 0.00 0.00 37.39 2.29
3908 3993 1.813102 ACAAAAAGGGCCCCAATTGA 58.187 45.000 28.37 0.00 0.00 2.57
3916 4001 2.039418 GGGCCCCAATTGAATACCTTC 58.961 52.381 12.23 0.00 0.00 3.46
3922 4007 5.833131 GCCCCAATTGAATACCTTCATTCTA 59.167 40.000 7.12 0.00 40.95 2.10
3926 4011 7.995488 CCCAATTGAATACCTTCATTCTACTCT 59.005 37.037 7.12 0.00 40.95 3.24
3937 4022 8.103305 ACCTTCATTCTACTCTTGATGCTTTAA 58.897 33.333 0.00 0.00 0.00 1.52
3961 4046 1.398692 TCCCTCCAGTTTTTGTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
3962 4047 1.064017 TCCCTCCAGTTTTTGTGTGCT 60.064 47.619 0.00 0.00 0.00 4.40
3963 4048 2.173782 TCCCTCCAGTTTTTGTGTGCTA 59.826 45.455 0.00 0.00 0.00 3.49
3964 4049 2.293399 CCCTCCAGTTTTTGTGTGCTAC 59.707 50.000 0.00 0.00 0.00 3.58
3965 4050 3.214328 CCTCCAGTTTTTGTGTGCTACT 58.786 45.455 0.00 0.00 0.00 2.57
3966 4051 3.003689 CCTCCAGTTTTTGTGTGCTACTG 59.996 47.826 0.00 0.00 36.77 2.74
3967 4052 3.616219 TCCAGTTTTTGTGTGCTACTGT 58.384 40.909 0.00 0.00 35.58 3.55
3990 4075 7.933396 TGTATATGCTCTTCATGGTGAATTTG 58.067 34.615 0.00 0.00 35.59 2.32
3999 4084 9.941664 CTCTTCATGGTGAATTTGATATTGTAC 57.058 33.333 0.00 0.00 35.59 2.90
4000 4085 8.611757 TCTTCATGGTGAATTTGATATTGTACG 58.388 33.333 0.00 0.00 35.59 3.67
4001 4086 7.857734 TCATGGTGAATTTGATATTGTACGT 57.142 32.000 0.00 0.00 0.00 3.57
4002 4087 8.950208 TCATGGTGAATTTGATATTGTACGTA 57.050 30.769 0.00 0.00 0.00 3.57
4007 4092 9.095065 GGTGAATTTGATATTGTACGTAGAAGT 57.905 33.333 11.11 2.40 0.00 3.01
4090 4175 3.909430 TGTCACCGAGATTGACACTTAC 58.091 45.455 1.05 0.00 46.64 2.34
4093 4178 5.106277 TGTCACCGAGATTGACACTTACTAG 60.106 44.000 1.05 0.00 46.64 2.57
4094 4179 5.008331 TCACCGAGATTGACACTTACTAGT 58.992 41.667 0.00 0.00 34.00 2.57
4098 4183 7.811236 CACCGAGATTGACACTTACTAGTAAAA 59.189 37.037 15.95 7.80 31.96 1.52
4100 4185 8.861101 CCGAGATTGACACTTACTAGTAAAAAG 58.139 37.037 15.95 9.25 31.96 2.27
4101 4186 8.861101 CGAGATTGACACTTACTAGTAAAAAGG 58.139 37.037 15.95 7.32 31.96 3.11
4102 4187 9.924650 GAGATTGACACTTACTAGTAAAAAGGA 57.075 33.333 15.95 2.56 31.96 3.36
4184 4269 6.846283 GCACGTCTTTGCATTCTTGTATATAC 59.154 38.462 5.89 5.89 42.49 1.47
4185 4270 7.057402 CACGTCTTTGCATTCTTGTATATACG 58.943 38.462 8.33 0.00 0.00 3.06
4228 4313 4.269363 GCAAGATGGCAATCATTTGTTAGC 59.731 41.667 3.34 0.00 35.97 3.09
4230 4315 5.864418 AGATGGCAATCATTTGTTAGCAT 57.136 34.783 3.34 0.00 35.97 3.79
4259 4344 1.951602 TGTTGATCCAGCTGCATATGC 59.048 47.619 21.09 21.09 42.50 3.14
4275 4360 4.095483 GCATATGCTGTAGCTTCAAACACT 59.905 41.667 20.64 0.00 42.66 3.55
4276 4361 5.392380 GCATATGCTGTAGCTTCAAACACTT 60.392 40.000 20.64 0.00 42.66 3.16
4278 4363 4.291540 TGCTGTAGCTTCAAACACTTTG 57.708 40.909 5.38 0.00 42.66 2.77
4315 4402 3.363341 TTTTGCGAAGGATGTGTTTCC 57.637 42.857 0.00 0.00 35.90 3.13
4352 4439 2.821969 GGTTGGATGCAGTGATGTTTCT 59.178 45.455 0.00 0.00 0.00 2.52
4367 4454 8.598041 AGTGATGTTTCTTACCACTAAGATTCT 58.402 33.333 0.00 0.00 38.54 2.40
4379 4466 5.182001 CCACTAAGATTCTGTCCTTTTGTGG 59.818 44.000 0.00 0.00 38.31 4.17
4386 4473 1.962807 CTGTCCTTTTGTGGGCATCAA 59.037 47.619 0.00 0.00 41.30 2.57
4607 4694 6.877322 TGTAGGTACTTGCTTTCCAGTAAATC 59.123 38.462 0.00 0.00 41.75 2.17
4614 4701 3.589735 TGCTTTCCAGTAAATCCCCTACA 59.410 43.478 0.00 0.00 0.00 2.74
4729 4816 0.779997 AAGATTTCAGTGGGTGGGCT 59.220 50.000 0.00 0.00 0.00 5.19
4730 4817 1.668826 AGATTTCAGTGGGTGGGCTA 58.331 50.000 0.00 0.00 0.00 3.93
4731 4818 1.992557 AGATTTCAGTGGGTGGGCTAA 59.007 47.619 0.00 0.00 0.00 3.09
4745 4832 8.599792 GTGGGTGGGCTAATACTTCTTAATATA 58.400 37.037 0.00 0.00 0.00 0.86
4746 4833 9.346515 TGGGTGGGCTAATACTTCTTAATATAT 57.653 33.333 0.00 0.00 0.00 0.86
4772 4861 9.891828 TTTGCTATCATTTATGTATTAAAGGCG 57.108 29.630 0.00 0.00 32.83 5.52
4828 4918 0.109723 TTGGTAGCTGGTGTGGGAAC 59.890 55.000 0.00 0.00 0.00 3.62
4842 4932 2.162809 GTGGGAACGGCGACAATAATTT 59.837 45.455 16.62 0.00 0.00 1.82
4899 4989 2.153645 GAAAATTGCAAAAGGCCCCTG 58.846 47.619 1.71 0.00 43.89 4.45
4934 5024 5.468540 AGTTAATTTTGGCCCTTTGAGTC 57.531 39.130 0.00 0.00 0.00 3.36
4951 5041 6.449635 TTGAGTCCATGCAAATACATAACC 57.550 37.500 0.00 0.00 0.00 2.85
5035 5125 8.407457 TGATTCACTAACTTATTTCTGCTACG 57.593 34.615 0.00 0.00 0.00 3.51
5036 5126 7.491372 TGATTCACTAACTTATTTCTGCTACGG 59.509 37.037 0.00 0.00 0.00 4.02
5205 5295 5.854010 TCATGTCTGTATCCAACTACCTC 57.146 43.478 0.00 0.00 0.00 3.85
5760 5862 5.635700 TCAGATCGAGATCGTAGTATCACTG 59.364 44.000 7.37 0.00 42.48 3.66
5761 5863 4.932799 AGATCGAGATCGTAGTATCACTGG 59.067 45.833 7.37 0.00 42.48 4.00
5888 6042 1.132689 ACTCCAGAGGGTTCACTCCTT 60.133 52.381 0.00 0.00 38.26 3.36
6010 6164 9.549078 TCACATATAATTAACGTGAAAGGCATA 57.451 29.630 10.75 0.00 33.86 3.14
6034 6188 6.469782 CCATGTGGTATTTTCTTGCCTTAT 57.530 37.500 0.00 0.00 0.00 1.73
6101 6258 2.367241 TGAGCTGTGGTTGTTAGTGCTA 59.633 45.455 0.00 0.00 0.00 3.49
6165 6322 6.418057 TGGTATTTTGAAACTTCAATGCCT 57.582 33.333 5.75 0.00 45.65 4.75
6180 6339 8.302438 ACTTCAATGCCTTCTTCATCTTTAAAG 58.698 33.333 9.04 9.04 0.00 1.85
6212 6372 3.009301 AGCGAACCGGTATATTTCGAG 57.991 47.619 25.54 2.35 43.83 4.04
6249 6615 7.604545 TGACTTAAAACACGTCCAATCATATCA 59.395 33.333 0.00 0.00 0.00 2.15
6283 6649 8.405531 GTGCTAAGCCATGTTAATCTTATTCAA 58.594 33.333 0.00 0.00 0.00 2.69
6318 6684 2.670414 GCATTCAGAAGAACAGTCCGAG 59.330 50.000 0.00 0.00 36.39 4.63
6373 6739 4.462508 TCTGCAAGATAGACCAGTGAAG 57.537 45.455 0.00 0.00 38.67 3.02
6389 6758 5.200483 CAGTGAAGGGGAAAATTAGCCATA 58.800 41.667 0.00 0.00 0.00 2.74
6391 6760 5.835280 AGTGAAGGGGAAAATTAGCCATATG 59.165 40.000 0.00 0.00 0.00 1.78
6424 6797 2.945668 GGAATTCTCGGACCATTTCCTG 59.054 50.000 5.23 0.00 43.25 3.86
6442 6815 9.079833 CATTTCCTGATCACAATGAAATGTTAC 57.920 33.333 22.33 0.00 42.46 2.50
6540 6913 2.611224 GGACACGGTGATTTTCTACGGT 60.611 50.000 16.29 0.00 0.00 4.83
6565 6944 5.464965 ACATTTTCCTGTACGCTATTTCG 57.535 39.130 0.00 0.00 0.00 3.46
6939 7332 2.271800 GAGTACTTGCATTCCGGACTG 58.728 52.381 17.06 17.06 0.00 3.51
7183 8315 9.948964 TCTAGTTATGGGGTTTAGTTACTTTTC 57.051 33.333 0.00 0.00 0.00 2.29
7187 8319 2.807967 GGGGTTTAGTTACTTTTCGCGT 59.192 45.455 5.77 0.00 0.00 6.01
7409 8541 8.490311 GGGAGCCTTATTATTCTAGCTGATAAT 58.510 37.037 0.00 6.75 0.00 1.28
7510 8643 2.221169 TGTTTTCTGAAGCACGCATCT 58.779 42.857 0.00 0.00 0.00 2.90
7511 8644 3.398406 TGTTTTCTGAAGCACGCATCTA 58.602 40.909 0.00 0.00 0.00 1.98
7512 8645 3.186409 TGTTTTCTGAAGCACGCATCTAC 59.814 43.478 0.00 0.00 0.00 2.59
7513 8646 1.629013 TTCTGAAGCACGCATCTACG 58.371 50.000 0.00 0.00 39.50 3.51
7549 8683 7.669304 TGGATGAAACTCTGAATTCCATGTTTA 59.331 33.333 15.07 8.20 34.13 2.01
7636 8770 8.477419 GGATTCTCCCATTAATGTTTATTGGA 57.523 34.615 14.25 10.81 0.00 3.53
7707 8841 2.226437 TGCAGAATTTGAGGCGAAAGAC 59.774 45.455 0.00 0.00 42.06 3.01
7708 8842 2.226437 GCAGAATTTGAGGCGAAAGACA 59.774 45.455 0.00 0.00 46.78 3.41
7724 8858 2.693069 AGACATTCTCTTGAAGGTGCG 58.307 47.619 0.82 0.00 45.60 5.34
7727 8861 4.160439 AGACATTCTCTTGAAGGTGCGATA 59.840 41.667 0.82 0.00 45.60 2.92
7736 8870 7.492669 TCTCTTGAAGGTGCGATAATTAAGAAG 59.507 37.037 0.00 0.00 0.00 2.85
7737 8871 7.103641 TCTTGAAGGTGCGATAATTAAGAAGT 58.896 34.615 0.00 0.00 0.00 3.01
7819 8954 4.461081 GGTAACCATATGTTTGAAGTGCCA 59.539 41.667 1.24 0.00 38.42 4.92
7999 9148 5.924356 TCATTATCTTCTATTCCCGTTGCA 58.076 37.500 0.00 0.00 0.00 4.08
8002 9151 6.861065 TTATCTTCTATTCCCGTTGCATTC 57.139 37.500 0.00 0.00 0.00 2.67
8003 9152 4.214986 TCTTCTATTCCCGTTGCATTCA 57.785 40.909 0.00 0.00 0.00 2.57
8005 9154 5.007034 TCTTCTATTCCCGTTGCATTCAAA 58.993 37.500 0.00 0.00 33.37 2.69
8007 9156 6.826231 TCTTCTATTCCCGTTGCATTCAAATA 59.174 34.615 0.00 0.00 33.37 1.40
8015 9164 3.727673 CGTTGCATTCAAATACCTCCGTG 60.728 47.826 0.00 0.00 33.37 4.94
8016 9165 3.066291 TGCATTCAAATACCTCCGTGT 57.934 42.857 0.00 0.00 0.00 4.49
8017 9166 3.417101 TGCATTCAAATACCTCCGTGTT 58.583 40.909 0.00 0.00 0.00 3.32
8018 9167 3.190327 TGCATTCAAATACCTCCGTGTTG 59.810 43.478 0.00 0.00 0.00 3.33
8021 9170 5.390613 CATTCAAATACCTCCGTGTTGAAC 58.609 41.667 0.00 0.00 38.80 3.18
8025 9174 0.753867 TACCTCCGTGTTGAACTGCA 59.246 50.000 0.00 0.00 0.00 4.41
8027 9176 1.021202 CCTCCGTGTTGAACTGCAAA 58.979 50.000 0.00 0.00 38.44 3.68
8031 9195 1.581602 CCGTGTTGAACTGCAAAAACG 59.418 47.619 4.86 4.86 43.23 3.60
8055 9219 8.619546 ACGTCTTATATTTAGTCACAGAGGTAC 58.380 37.037 0.00 0.00 0.00 3.34
8082 9288 8.246871 TGTAGTAGCTTATATCATGCATCTGAC 58.753 37.037 0.00 0.00 0.00 3.51
8224 9430 7.179516 TGTGAAGTTGAATATGGTAGACCTGTA 59.820 37.037 0.00 0.00 36.82 2.74
8274 9480 2.620251 TCATTGATTCCGGCTAGGTG 57.380 50.000 0.00 0.00 41.99 4.00
8283 9489 1.148310 CCGGCTAGGTGAATTATGCG 58.852 55.000 0.00 0.00 34.51 4.73
8431 9644 5.393461 GCCCATTGTTCTCACATTTTAGGAG 60.393 44.000 0.00 0.00 31.06 3.69
8447 9660 8.703336 CATTTTAGGAGTGATGATGTACATACG 58.297 37.037 8.71 0.00 39.56 3.06
8503 9716 2.171870 ACTCGTTCTCCCCAAGTCAAAA 59.828 45.455 0.00 0.00 0.00 2.44
8507 9720 3.744530 CGTTCTCCCCAAGTCAAAAGACT 60.745 47.826 0.00 0.00 36.92 3.24
8516 9729 6.265422 CCCCAAGTCAAAAGACTCTGTTTATT 59.735 38.462 0.00 0.00 33.73 1.40
8519 9732 7.862873 CCAAGTCAAAAGACTCTGTTTATTTCC 59.137 37.037 0.00 0.00 33.73 3.13
8542 9755 3.834813 ACTTGCACTCTGTAATCTCCTCA 59.165 43.478 0.00 0.00 0.00 3.86
8547 9760 4.867608 GCACTCTGTAATCTCCTCACTTTC 59.132 45.833 0.00 0.00 0.00 2.62
8549 9762 6.459066 CACTCTGTAATCTCCTCACTTTCAA 58.541 40.000 0.00 0.00 0.00 2.69
8620 9833 4.350816 TCATTCTCCCCAAGTTCTCAAAGA 59.649 41.667 0.00 0.00 0.00 2.52
8621 9834 4.788925 TTCTCCCCAAGTTCTCAAAGAA 57.211 40.909 0.00 0.00 0.00 2.52
8653 9866 9.618890 CTTATTCCTACAATGGAGAAGAAATCA 57.381 33.333 0.00 0.00 37.43 2.57
8714 9927 0.906282 CCAAAGAGCCCAAGCCCAAT 60.906 55.000 0.00 0.00 41.25 3.16
8750 9963 1.472728 GCACCCGGGTATGTGAAGTAG 60.473 57.143 29.72 11.20 34.37 2.57
8751 9964 1.138266 CACCCGGGTATGTGAAGTAGG 59.862 57.143 29.72 5.11 34.37 3.18
8766 10064 8.697846 TGTGAAGTAGGTTTTTACTGATATCG 57.302 34.615 0.00 0.00 34.24 2.92
8768 10066 8.592998 GTGAAGTAGGTTTTTACTGATATCGTG 58.407 37.037 9.52 3.01 34.24 4.35
8775 10073 6.375377 GTTTTTACTGATATCGTGCAACCAA 58.625 36.000 9.52 0.00 0.00 3.67
8782 10080 4.457257 TGATATCGTGCAACCAATTGACAA 59.543 37.500 7.12 0.00 38.15 3.18
8853 10153 3.782523 TGGACCAGATAGCTCAAGGATTT 59.217 43.478 0.00 0.00 0.00 2.17
8863 10163 5.796424 AGCTCAAGGATTTGACACAAAAT 57.204 34.783 0.00 0.00 38.37 1.82
8867 10167 7.231317 AGCTCAAGGATTTGACACAAAATAAGA 59.769 33.333 0.00 0.00 38.37 2.10
8880 10180 8.524870 ACACAAAATAAGAGATGTTTGATTGC 57.475 30.769 2.25 0.00 35.44 3.56
8902 10202 4.081420 GCCTCATCTAGACCAACAGAAGAA 60.081 45.833 0.00 0.00 0.00 2.52
8918 10218 1.028868 AGAAGAGCCCTGCGCATTTC 61.029 55.000 12.24 6.51 41.38 2.17
8920 10220 0.895100 AAGAGCCCTGCGCATTTCAA 60.895 50.000 12.24 0.00 41.38 2.69
8933 10233 4.484236 CGCATTTCAATTAAGAGGCACAA 58.516 39.130 0.00 0.00 0.00 3.33
8936 10236 5.346822 GCATTTCAATTAAGAGGCACAACAG 59.653 40.000 0.00 0.00 0.00 3.16
8950 10250 0.947244 CAACAGTGCTCCAACCACTC 59.053 55.000 0.00 0.00 41.34 3.51
8970 10277 3.393472 GCTAGATGCCCTTCCACAG 57.607 57.895 0.00 0.00 35.15 3.66
8983 10290 3.560025 CCTTCCACAGGCACAAGTCTTAT 60.560 47.826 0.00 0.00 35.13 1.73
8986 10293 4.575885 TCCACAGGCACAAGTCTTATTAC 58.424 43.478 0.00 0.00 0.00 1.89
8987 10294 4.286032 TCCACAGGCACAAGTCTTATTACT 59.714 41.667 0.00 0.00 0.00 2.24
8988 10295 5.482526 TCCACAGGCACAAGTCTTATTACTA 59.517 40.000 0.00 0.00 0.00 1.82
8990 10297 6.480320 CCACAGGCACAAGTCTTATTACTATC 59.520 42.308 0.00 0.00 0.00 2.08
8991 10298 7.268586 CACAGGCACAAGTCTTATTACTATCT 58.731 38.462 0.00 0.00 0.00 1.98
8992 10299 7.766278 CACAGGCACAAGTCTTATTACTATCTT 59.234 37.037 0.00 0.00 0.00 2.40
8994 10301 6.763610 AGGCACAAGTCTTATTACTATCTTGC 59.236 38.462 0.00 0.00 36.69 4.01
8995 10302 6.017852 GGCACAAGTCTTATTACTATCTTGCC 60.018 42.308 0.00 0.00 36.69 4.52
8996 10303 6.538742 GCACAAGTCTTATTACTATCTTGCCA 59.461 38.462 0.00 0.00 36.69 4.92
9157 10464 5.411781 AGAGCCGAACATAACAGAGTTAAG 58.588 41.667 0.00 0.00 0.00 1.85
9159 10466 4.222145 AGCCGAACATAACAGAGTTAAGGA 59.778 41.667 0.00 0.00 31.33 3.36
9167 10474 8.834749 ACATAACAGAGTTAAGGAAGAACTTC 57.165 34.615 6.06 6.06 37.27 3.01
9183 10490 7.148390 GGAAGAACTTCTAATTCTGGTGTAAGC 60.148 40.741 13.14 0.00 36.52 3.09
9210 10517 5.878116 CACCTAAATTGATCCGGTTCTTGTA 59.122 40.000 13.55 1.05 0.00 2.41
9211 10518 6.542370 CACCTAAATTGATCCGGTTCTTGTAT 59.458 38.462 13.55 0.00 0.00 2.29
9212 10519 6.542370 ACCTAAATTGATCCGGTTCTTGTATG 59.458 38.462 13.55 1.93 0.00 2.39
9213 10520 4.900635 AATTGATCCGGTTCTTGTATGC 57.099 40.909 13.55 0.00 0.00 3.14
9214 10521 3.342377 TTGATCCGGTTCTTGTATGCA 57.658 42.857 13.55 0.00 0.00 3.96
9215 10522 3.342377 TGATCCGGTTCTTGTATGCAA 57.658 42.857 13.55 0.00 0.00 4.08
9216 10523 3.884895 TGATCCGGTTCTTGTATGCAAT 58.115 40.909 13.55 0.00 33.65 3.56
9217 10524 3.876914 TGATCCGGTTCTTGTATGCAATC 59.123 43.478 13.55 0.00 33.65 2.67
9218 10525 2.639065 TCCGGTTCTTGTATGCAATCC 58.361 47.619 0.00 0.19 33.65 3.01
9219 10526 2.026729 TCCGGTTCTTGTATGCAATCCA 60.027 45.455 0.00 0.00 33.65 3.41
9220 10527 2.355756 CCGGTTCTTGTATGCAATCCAG 59.644 50.000 0.00 0.00 33.65 3.86
9221 10528 2.223340 CGGTTCTTGTATGCAATCCAGC 60.223 50.000 0.00 0.00 33.65 4.85
9222 10529 2.099756 GGTTCTTGTATGCAATCCAGCC 59.900 50.000 0.00 0.00 33.65 4.85
9223 10530 1.667236 TCTTGTATGCAATCCAGCCG 58.333 50.000 0.00 0.00 33.65 5.52
9224 10531 1.209261 TCTTGTATGCAATCCAGCCGA 59.791 47.619 0.00 0.00 33.65 5.54
9225 10532 1.331756 CTTGTATGCAATCCAGCCGAC 59.668 52.381 0.00 0.00 33.65 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.205464 CCTTTCTAACACTCTCTTGCATTTGA 59.795 38.462 0.00 0.00 0.00 2.69
73 74 3.243367 CCGAGATTGAAGCACACCAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
92 93 0.964860 TTCGAACGATACCCCACCGA 60.965 55.000 0.00 0.00 0.00 4.69
267 268 1.686355 AACTGTTCAAATGTGGCCGA 58.314 45.000 0.00 0.00 0.00 5.54
336 337 2.805671 CGTGCTCAACCAAGTCATTGTA 59.194 45.455 0.00 0.00 34.39 2.41
338 339 1.603802 ACGTGCTCAACCAAGTCATTG 59.396 47.619 0.00 0.00 36.09 2.82
521 522 8.542080 TCAAGATCAAGAAATGCCCAAATTTAT 58.458 29.630 0.00 0.00 29.89 1.40
541 543 1.141657 CCCCATCATGTCCGTCAAGAT 59.858 52.381 0.00 0.00 35.26 2.40
544 546 1.574263 TACCCCATCATGTCCGTCAA 58.426 50.000 0.00 0.00 0.00 3.18
562 564 3.496711 CGCTGCCGCATCCTTTTA 58.503 55.556 0.00 0.00 35.30 1.52
644 647 8.091385 ACGTCCGTTTTATTCTATTTTTGTCT 57.909 30.769 0.00 0.00 0.00 3.41
726 730 3.363341 TTTTGGAAACTGGAATGCGAC 57.637 42.857 0.00 0.00 0.00 5.19
746 750 1.773410 GGCCGCGTTTACATTTGTTT 58.227 45.000 4.92 0.00 0.00 2.83
747 751 0.386226 CGGCCGCGTTTACATTTGTT 60.386 50.000 14.67 0.00 0.00 2.83
748 752 1.208103 CGGCCGCGTTTACATTTGT 59.792 52.632 14.67 0.00 0.00 2.83
749 753 0.791610 GTCGGCCGCGTTTACATTTG 60.792 55.000 23.51 0.00 0.00 2.32
750 754 1.498611 GTCGGCCGCGTTTACATTT 59.501 52.632 23.51 0.00 0.00 2.32
751 755 2.732670 CGTCGGCCGCGTTTACATT 61.733 57.895 26.57 0.00 0.00 2.71
752 756 3.183323 CGTCGGCCGCGTTTACAT 61.183 61.111 26.57 0.00 0.00 2.29
811 823 4.838486 CGGAGCCGAGACACGAGC 62.838 72.222 2.00 0.00 45.77 5.03
857 869 2.644555 ATACGGTGCGGTGCCATCTC 62.645 60.000 0.00 0.00 0.00 2.75
970 983 4.180946 CGGTCGAGCGGAGTGGAG 62.181 72.222 28.25 0.00 0.00 3.86
984 997 4.666253 ATGGTTGCTGGCAGCGGT 62.666 61.111 32.12 14.46 46.26 5.68
985 998 4.124351 CATGGTTGCTGGCAGCGG 62.124 66.667 32.12 14.47 46.26 5.52
986 999 4.124351 CCATGGTTGCTGGCAGCG 62.124 66.667 32.12 17.65 46.26 5.18
991 1004 3.384532 GGTGGCCATGGTTGCTGG 61.385 66.667 9.72 0.00 36.81 4.85
992 1005 3.384532 GGGTGGCCATGGTTGCTG 61.385 66.667 9.72 0.00 0.00 4.41
993 1006 4.702274 GGGGTGGCCATGGTTGCT 62.702 66.667 9.72 0.00 0.00 3.91
995 1008 3.963124 GAGGGGGTGGCCATGGTTG 62.963 68.421 9.72 0.00 0.00 3.77
996 1009 3.672503 GAGGGGGTGGCCATGGTT 61.673 66.667 9.72 0.00 0.00 3.67
2061 2092 0.041833 TCCAACTCTCTAGGCTGGCT 59.958 55.000 9.28 9.28 32.45 4.75
2062 2093 0.463620 CTCCAACTCTCTAGGCTGGC 59.536 60.000 0.00 0.00 32.45 4.85
2063 2094 1.754226 GTCTCCAACTCTCTAGGCTGG 59.246 57.143 0.00 0.00 33.26 4.85
2064 2095 2.733956 AGTCTCCAACTCTCTAGGCTG 58.266 52.381 0.00 0.00 30.02 4.85
2142 2173 5.235516 GCAGTTAGTAGTGGTAGCTTCAAA 58.764 41.667 0.00 0.00 0.00 2.69
2151 2182 1.544691 CAGTCGGCAGTTAGTAGTGGT 59.455 52.381 0.00 0.00 0.00 4.16
2152 2183 1.135083 CCAGTCGGCAGTTAGTAGTGG 60.135 57.143 0.00 0.00 0.00 4.00
2153 2184 2.279582 CCAGTCGGCAGTTAGTAGTG 57.720 55.000 0.00 0.00 0.00 2.74
2190 2224 3.821033 GGACAGTCAAGTTATGGCAAACT 59.179 43.478 2.17 8.59 41.46 2.66
2191 2225 3.821033 AGGACAGTCAAGTTATGGCAAAC 59.179 43.478 2.17 0.00 35.54 2.93
2206 2240 2.224818 ACTACGAAGACCAGAGGACAGT 60.225 50.000 0.00 0.00 0.00 3.55
2289 2336 6.629963 GCTGGAGCAGAGCAATATATATCAGT 60.630 42.308 0.00 0.00 41.59 3.41
2296 2343 3.259374 GGTAGCTGGAGCAGAGCAATATA 59.741 47.826 0.00 0.00 45.16 0.86
2297 2344 2.038295 GGTAGCTGGAGCAGAGCAATAT 59.962 50.000 0.00 0.00 45.16 1.28
2298 2345 1.414181 GGTAGCTGGAGCAGAGCAATA 59.586 52.381 0.00 0.00 45.16 1.90
2299 2346 0.179936 GGTAGCTGGAGCAGAGCAAT 59.820 55.000 0.00 0.00 45.16 3.56
2426 2473 6.070938 TGAGATGCATATTCTGTATCCTCCAG 60.071 42.308 0.00 0.00 45.24 3.86
2480 2527 6.861065 AATCTTAGTTAATGTGGCATACGG 57.139 37.500 0.00 0.00 0.00 4.02
2529 2577 9.185680 AGGTAAGTGGGAATGACATTATTAAAC 57.814 33.333 0.00 0.00 0.00 2.01
2548 2596 9.780186 GTTGGCATAAATAGATCTTAGGTAAGT 57.220 33.333 0.00 0.00 34.93 2.24
2559 2607 9.507329 AGATAAATGTCGTTGGCATAAATAGAT 57.493 29.630 0.00 0.00 0.00 1.98
2560 2608 8.773645 CAGATAAATGTCGTTGGCATAAATAGA 58.226 33.333 0.00 0.00 0.00 1.98
2561 2609 7.535258 GCAGATAAATGTCGTTGGCATAAATAG 59.465 37.037 0.00 0.00 0.00 1.73
2562 2610 7.228507 AGCAGATAAATGTCGTTGGCATAAATA 59.771 33.333 0.00 0.00 0.00 1.40
2575 2623 4.508124 CGTACCCTTGAGCAGATAAATGTC 59.492 45.833 0.00 0.00 0.00 3.06
2577 2625 4.442706 ACGTACCCTTGAGCAGATAAATG 58.557 43.478 0.00 0.00 0.00 2.32
2651 2699 2.033448 TCACCGGCACCACCAATC 59.967 61.111 0.00 0.00 39.03 2.67
2682 2730 1.471119 TCACCGGTATCTGAGTCCAC 58.529 55.000 6.87 0.00 0.00 4.02
2702 2750 1.678635 CAATGCGGCAGGAAGGGAA 60.679 57.895 9.25 0.00 0.00 3.97
2820 2868 6.321435 GCACTATTTTAAGCTATTCCTTGGGT 59.679 38.462 0.00 0.00 0.00 4.51
2821 2869 6.321181 TGCACTATTTTAAGCTATTCCTTGGG 59.679 38.462 0.00 0.00 0.00 4.12
2831 2880 7.035612 GGCACTTAATTGCACTATTTTAAGCT 58.964 34.615 18.23 0.00 44.94 3.74
2842 2891 3.674753 GTGTCAATGGCACTTAATTGCAC 59.325 43.478 18.23 8.73 44.94 4.57
2859 2908 5.361571 ACATACACGATATTACTGGGTGTCA 59.638 40.000 0.00 0.00 41.60 3.58
2865 2914 4.627058 TGGCACATACACGATATTACTGG 58.373 43.478 0.00 0.00 0.00 4.00
2884 2934 5.163581 ACAAAGAAGCTTCACATGATATGGC 60.164 40.000 27.57 0.00 33.60 4.40
2886 2936 8.024865 TCAAACAAAGAAGCTTCACATGATATG 58.975 33.333 27.57 19.67 0.00 1.78
2887 2937 8.025445 GTCAAACAAAGAAGCTTCACATGATAT 58.975 33.333 27.57 11.76 0.00 1.63
2888 2938 7.013178 TGTCAAACAAAGAAGCTTCACATGATA 59.987 33.333 27.57 16.34 0.00 2.15
2891 2941 5.342433 TGTCAAACAAAGAAGCTTCACATG 58.658 37.500 27.57 22.50 0.00 3.21
2894 2944 4.354587 CCTGTCAAACAAAGAAGCTTCAC 58.645 43.478 27.57 14.59 0.00 3.18
2895 2945 3.181487 GCCTGTCAAACAAAGAAGCTTCA 60.181 43.478 27.57 1.82 0.00 3.02
2896 2946 3.067320 AGCCTGTCAAACAAAGAAGCTTC 59.933 43.478 19.11 19.11 0.00 3.86
2897 2947 3.026694 AGCCTGTCAAACAAAGAAGCTT 58.973 40.909 0.00 0.00 0.00 3.74
2898 2948 2.659428 AGCCTGTCAAACAAAGAAGCT 58.341 42.857 0.00 0.00 0.00 3.74
2899 2949 3.815401 TCTAGCCTGTCAAACAAAGAAGC 59.185 43.478 0.00 0.00 0.00 3.86
2900 2950 5.300752 TCTCTAGCCTGTCAAACAAAGAAG 58.699 41.667 0.00 0.00 0.00 2.85
2901 2951 5.163301 ACTCTCTAGCCTGTCAAACAAAGAA 60.163 40.000 0.00 0.00 0.00 2.52
2902 2952 4.345257 ACTCTCTAGCCTGTCAAACAAAGA 59.655 41.667 0.00 0.00 0.00 2.52
2903 2953 4.636249 ACTCTCTAGCCTGTCAAACAAAG 58.364 43.478 0.00 0.00 0.00 2.77
2904 2954 4.689612 ACTCTCTAGCCTGTCAAACAAA 57.310 40.909 0.00 0.00 0.00 2.83
2905 2955 4.689612 AACTCTCTAGCCTGTCAAACAA 57.310 40.909 0.00 0.00 0.00 2.83
2906 2956 4.345257 AGAAACTCTCTAGCCTGTCAAACA 59.655 41.667 0.00 0.00 30.22 2.83
2907 2957 4.888917 AGAAACTCTCTAGCCTGTCAAAC 58.111 43.478 0.00 0.00 30.22 2.93
2908 2958 4.021016 GGAGAAACTCTCTAGCCTGTCAAA 60.021 45.833 3.81 0.00 42.95 2.69
2909 2959 3.511934 GGAGAAACTCTCTAGCCTGTCAA 59.488 47.826 3.81 0.00 42.95 3.18
3098 3148 5.699001 TGCACACAAACGAATAGACATTACT 59.301 36.000 0.00 0.00 0.00 2.24
3100 3150 6.735678 ATGCACACAAACGAATAGACATTA 57.264 33.333 0.00 0.00 0.00 1.90
3102 3152 5.627499 AATGCACACAAACGAATAGACAT 57.373 34.783 0.00 0.00 0.00 3.06
3104 3154 5.689819 AGAAATGCACACAAACGAATAGAC 58.310 37.500 0.00 0.00 0.00 2.59
3112 3162 9.840427 ATTGTACTAATAGAAATGCACACAAAC 57.160 29.630 0.00 0.00 0.00 2.93
3214 3292 5.431765 CCATCTTCAGCATTTACTACAGGT 58.568 41.667 0.00 0.00 0.00 4.00
3304 3382 1.016130 CACCTCGATCGCAAGCAAGT 61.016 55.000 11.09 0.00 37.18 3.16
3413 3491 7.971368 CCCCCTTCCAAATAATTCTTTAGAA 57.029 36.000 0.00 0.00 38.56 2.10
3438 3516 9.468532 AATAGCAAAAGAAGTTGAAAGTCATTC 57.531 29.630 0.00 0.00 38.60 2.67
3440 3518 9.822185 AAAATAGCAAAAGAAGTTGAAAGTCAT 57.178 25.926 0.00 0.00 0.00 3.06
3441 3519 9.301153 GAAAATAGCAAAAGAAGTTGAAAGTCA 57.699 29.630 0.00 0.00 0.00 3.41
3442 3520 9.301153 TGAAAATAGCAAAAGAAGTTGAAAGTC 57.699 29.630 0.00 0.00 0.00 3.01
3443 3521 9.305925 CTGAAAATAGCAAAAGAAGTTGAAAGT 57.694 29.630 0.00 0.00 0.00 2.66
3444 3522 8.271487 GCTGAAAATAGCAAAAGAAGTTGAAAG 58.729 33.333 0.00 0.00 43.17 2.62
3445 3523 8.130307 GCTGAAAATAGCAAAAGAAGTTGAAA 57.870 30.769 0.00 0.00 43.17 2.69
3446 3524 7.698836 GCTGAAAATAGCAAAAGAAGTTGAA 57.301 32.000 0.00 0.00 43.17 2.69
3512 3590 1.883084 GTGTCGCAGGCCTATTCCG 60.883 63.158 3.98 6.44 0.00 4.30
3527 3605 8.934023 TCCTCATTTTTCTTACCTTATTGTGT 57.066 30.769 0.00 0.00 0.00 3.72
3549 3627 9.771534 GTAATTAATGTGAGCTAGAGAAATCCT 57.228 33.333 0.00 0.00 0.00 3.24
3589 3674 6.148480 GGAGGTGCAAAATAGATAGCATAGTG 59.852 42.308 0.00 0.00 39.43 2.74
3653 3738 6.669154 TGAGGTATGATATGCCATATGTCAGA 59.331 38.462 0.99 0.00 37.52 3.27
3663 3748 7.398024 ACCTAATTTCTGAGGTATGATATGCC 58.602 38.462 0.00 0.00 44.51 4.40
3721 3806 5.886609 TCAATAAGAACATTCACCCCTTCA 58.113 37.500 0.00 0.00 0.00 3.02
3755 3840 3.436906 CCATATTCCCAGAGCCCATCAAA 60.437 47.826 0.00 0.00 0.00 2.69
3843 3928 6.199557 TGGGATAATATGTGCATTACCTGT 57.800 37.500 0.00 0.00 0.00 4.00
3873 3958 5.221823 CCTTTTTGTATTCCAAATGGGGTGT 60.222 40.000 0.00 0.00 42.45 4.16
3880 3965 3.265737 GGGGCCCTTTTTGTATTCCAAAT 59.734 43.478 24.38 0.00 42.45 2.32
3884 3969 1.945580 TGGGGCCCTTTTTGTATTCC 58.054 50.000 25.93 0.00 0.00 3.01
3885 3970 4.019771 TCAATTGGGGCCCTTTTTGTATTC 60.020 41.667 25.93 0.18 0.00 1.75
3891 3976 3.265737 GGTATTCAATTGGGGCCCTTTTT 59.734 43.478 25.93 11.69 0.00 1.94
3893 3978 2.045745 AGGTATTCAATTGGGGCCCTTT 59.954 45.455 25.93 14.80 0.00 3.11
3894 3979 1.651235 AGGTATTCAATTGGGGCCCTT 59.349 47.619 25.93 7.85 0.00 3.95
3908 3993 7.800092 AGCATCAAGAGTAGAATGAAGGTATT 58.200 34.615 0.00 0.00 0.00 1.89
3916 4001 7.615582 TGGTTAAAGCATCAAGAGTAGAATG 57.384 36.000 0.00 0.00 0.00 2.67
3922 4007 4.706962 GGGAATGGTTAAAGCATCAAGAGT 59.293 41.667 0.00 0.00 34.88 3.24
3926 4011 4.023291 GGAGGGAATGGTTAAAGCATCAA 58.977 43.478 0.00 0.00 34.88 2.57
3937 4022 2.965147 CACAAAAACTGGAGGGAATGGT 59.035 45.455 0.00 0.00 0.00 3.55
3961 4046 6.986250 TCACCATGAAGAGCATATACAGTAG 58.014 40.000 0.00 0.00 34.82 2.57
3962 4047 6.976934 TCACCATGAAGAGCATATACAGTA 57.023 37.500 0.00 0.00 34.82 2.74
3963 4048 5.876651 TCACCATGAAGAGCATATACAGT 57.123 39.130 0.00 0.00 34.82 3.55
3964 4049 7.741027 AATTCACCATGAAGAGCATATACAG 57.259 36.000 0.00 0.00 40.05 2.74
3965 4050 7.774625 TCAAATTCACCATGAAGAGCATATACA 59.225 33.333 0.00 0.00 40.05 2.29
3966 4051 8.158169 TCAAATTCACCATGAAGAGCATATAC 57.842 34.615 0.00 0.00 40.05 1.47
3967 4052 8.929260 ATCAAATTCACCATGAAGAGCATATA 57.071 30.769 0.00 0.00 40.05 0.86
3999 4084 9.011407 CAAAAGAGTATAGCTTACACTTCTACG 57.989 37.037 14.23 0.00 30.20 3.51
4000 4085 9.857957 ACAAAAGAGTATAGCTTACACTTCTAC 57.142 33.333 14.23 0.00 30.20 2.59
4002 4087 9.425577 GAACAAAAGAGTATAGCTTACACTTCT 57.574 33.333 14.23 4.06 30.20 2.85
4007 4092 9.367444 GCTAAGAACAAAAGAGTATAGCTTACA 57.633 33.333 0.00 0.00 0.00 2.41
4098 4183 8.055181 TGGCTACTCATATTTTTCTGAATCCTT 58.945 33.333 0.00 0.00 0.00 3.36
4100 4185 7.040823 CCTGGCTACTCATATTTTTCTGAATCC 60.041 40.741 0.00 0.00 0.00 3.01
4101 4186 7.500559 ACCTGGCTACTCATATTTTTCTGAATC 59.499 37.037 0.00 0.00 0.00 2.52
4102 4187 7.349598 ACCTGGCTACTCATATTTTTCTGAAT 58.650 34.615 0.00 0.00 0.00 2.57
4103 4188 6.721318 ACCTGGCTACTCATATTTTTCTGAA 58.279 36.000 0.00 0.00 0.00 3.02
4104 4189 6.313519 ACCTGGCTACTCATATTTTTCTGA 57.686 37.500 0.00 0.00 0.00 3.27
4114 4199 5.291905 GGTAACATAACCTGGCTACTCAT 57.708 43.478 0.00 0.00 36.53 2.90
4184 4269 5.613812 TGCGATTGTAACTTGATGTAAACG 58.386 37.500 0.00 0.00 0.00 3.60
4185 4270 7.295201 TCTTGCGATTGTAACTTGATGTAAAC 58.705 34.615 0.00 0.00 0.00 2.01
4201 4286 4.116961 CAAATGATTGCCATCTTGCGATT 58.883 39.130 0.00 0.00 35.46 3.34
4202 4287 3.131577 ACAAATGATTGCCATCTTGCGAT 59.868 39.130 0.00 0.00 40.34 4.58
4204 4289 2.883574 ACAAATGATTGCCATCTTGCG 58.116 42.857 0.00 0.00 40.34 4.85
4230 4315 4.700700 CAGCTGGATCAACATCACTATGA 58.299 43.478 5.57 0.00 36.54 2.15
4248 4333 2.158856 TGAAGCTACAGCATATGCAGCT 60.159 45.455 26.86 26.86 45.85 4.24
4259 4344 4.558538 AGCAAAGTGTTTGAAGCTACAG 57.441 40.909 3.56 0.00 43.26 2.74
4301 4388 4.937201 AAAACTGGGAAACACATCCTTC 57.063 40.909 0.00 0.00 39.57 3.46
4324 4411 0.179004 ACTGCATCCAACCAAACCGA 60.179 50.000 0.00 0.00 0.00 4.69
4352 4439 7.444183 CACAAAAGGACAGAATCTTAGTGGTAA 59.556 37.037 0.00 0.00 31.45 2.85
4367 4454 2.079170 TTGATGCCCACAAAAGGACA 57.921 45.000 0.00 0.00 0.00 4.02
4379 4466 8.804912 ATTTGAGGAAGATAGATATTGATGCC 57.195 34.615 0.00 0.00 0.00 4.40
4410 4497 6.705825 CCTGCAAACTAAATTAACAAAAGCCT 59.294 34.615 0.00 0.00 0.00 4.58
4607 4694 1.201429 AGGCCAGAAGTGTGTAGGGG 61.201 60.000 5.01 0.00 0.00 4.79
4614 4701 4.327680 GAATACAGAAAGGCCAGAAGTGT 58.672 43.478 5.01 4.14 0.00 3.55
4704 4791 2.624838 CACCCACTGAAATCTTTGTGCT 59.375 45.455 0.00 0.00 0.00 4.40
4746 4833 9.891828 CGCCTTTAATACATAAATGATAGCAAA 57.108 29.630 0.00 0.00 33.15 3.68
4764 4853 2.088423 CATAACCAGGCACGCCTTTAA 58.912 47.619 8.15 0.00 45.70 1.52
4766 4855 0.251165 ACATAACCAGGCACGCCTTT 60.251 50.000 8.15 3.94 45.70 3.11
4772 4861 1.948104 TATGCGACATAACCAGGCAC 58.052 50.000 0.00 0.00 36.31 5.01
4828 4918 4.670621 GCAGTCATAAAATTATTGTCGCCG 59.329 41.667 0.00 0.00 0.00 6.46
4842 4932 4.709886 TCACTACCTTAGCTGCAGTCATAA 59.290 41.667 16.64 11.12 0.00 1.90
4934 5024 3.066621 ACTGCGGTTATGTATTTGCATGG 59.933 43.478 0.00 0.00 0.00 3.66
5035 5125 4.342772 CGCTGTCACATAGTAAAAATGCC 58.657 43.478 0.00 0.00 0.00 4.40
5036 5126 3.786048 GCGCTGTCACATAGTAAAAATGC 59.214 43.478 0.00 0.00 0.00 3.56
5044 5134 1.807165 CGCAGCGCTGTCACATAGT 60.807 57.895 35.80 0.00 0.00 2.12
5205 5295 1.226746 AACCCGAGACGCAAAAAGAG 58.773 50.000 0.00 0.00 0.00 2.85
5554 5647 8.424918 TCTTCAGTCTGTCAGAGAAATAGTTTT 58.575 33.333 1.75 0.00 30.26 2.43
5760 5862 5.988287 TGGAAAATAAAAATCTCATGGCCC 58.012 37.500 0.00 0.00 0.00 5.80
5761 5863 9.783081 ATATTGGAAAATAAAAATCTCATGGCC 57.217 29.630 0.00 0.00 0.00 5.36
5888 6042 2.015587 TGAGCATTGCGCATAATGTCA 58.984 42.857 20.15 18.05 46.13 3.58
5963 6117 8.006298 TGTGAAAATAAGACCACAAAACAGAT 57.994 30.769 0.00 0.00 36.69 2.90
6034 6188 0.326595 TGCCAATCCGTCTGCCTTAA 59.673 50.000 0.00 0.00 0.00 1.85
6101 6258 4.323104 GGACAGAAGCATAACCAGAAGTCT 60.323 45.833 0.00 0.00 0.00 3.24
6180 6339 5.069501 ACCGGTTCGCTAGATAATATTCC 57.930 43.478 0.00 0.00 0.00 3.01
6283 6649 8.985315 TCTTCTGAATGCAATATTATTCCAGT 57.015 30.769 8.00 0.00 33.43 4.00
6318 6684 7.677454 TCAGATGACCATATGTAAATGCATC 57.323 36.000 0.00 0.00 32.28 3.91
6373 6739 6.987403 TTAACCATATGGCTAATTTTCCCC 57.013 37.500 22.18 0.00 39.32 4.81
6514 6887 4.568152 AGAAAATCACCGTGTCCTTTTG 57.432 40.909 11.33 0.00 0.00 2.44
6540 6913 7.922278 ACGAAATAGCGTACAGGAAAATGTATA 59.078 33.333 0.00 0.00 43.61 1.47
6565 6944 5.041940 AGAGAAACTCAGAACAACACGTAC 58.958 41.667 0.00 0.00 32.06 3.67
6939 7332 7.313646 CAGGATGAAGAAATATGATGAATGGC 58.686 38.462 0.00 0.00 39.69 4.40
7106 8223 5.992217 AGACTGTAAGCACTGAAACCTTTAG 59.008 40.000 0.00 0.00 37.60 1.85
7167 8299 3.120546 GGACGCGAAAAGTAACTAAACCC 60.121 47.826 15.93 0.00 0.00 4.11
7169 8301 4.713854 TGGACGCGAAAAGTAACTAAAC 57.286 40.909 15.93 0.00 0.00 2.01
7183 8315 1.434555 TTGAAGTAACCATGGACGCG 58.565 50.000 21.47 3.53 0.00 6.01
7187 8319 5.640147 ACTGGAAATTGAAGTAACCATGGA 58.360 37.500 21.47 0.00 0.00 3.41
7409 8541 7.175990 GTGTTCCTCTTTGTTGAACCCATAATA 59.824 37.037 0.00 0.00 38.04 0.98
7511 8644 9.025041 TCAGAGTTTCATCCATATATGATACGT 57.975 33.333 14.54 0.00 40.58 3.57
7512 8645 9.860898 TTCAGAGTTTCATCCATATATGATACG 57.139 33.333 14.54 0.00 40.58 3.06
7549 8683 2.225091 TGCATCTCCCACACCTTTCAAT 60.225 45.455 0.00 0.00 0.00 2.57
7622 8756 9.368674 CAACATGATGCTTCCAATAAACATTAA 57.631 29.630 0.00 0.00 0.00 1.40
7629 8763 7.465353 TCTTTCAACATGATGCTTCCAATAA 57.535 32.000 0.00 0.00 0.00 1.40
7636 8770 6.829229 TTCTGATCTTTCAACATGATGCTT 57.171 33.333 0.00 0.00 0.00 3.91
7707 8841 5.998454 ATTATCGCACCTTCAAGAGAATG 57.002 39.130 0.00 0.00 32.31 2.67
7708 8842 7.987458 TCTTAATTATCGCACCTTCAAGAGAAT 59.013 33.333 0.00 0.00 32.31 2.40
7736 8870 4.524328 AGGAGGGAAATGAAATTCACACAC 59.476 41.667 0.00 0.00 33.67 3.82
7737 8871 4.739793 AGGAGGGAAATGAAATTCACACA 58.260 39.130 0.00 0.00 33.67 3.72
7816 8951 2.551459 GCACATTCTATGACCATCTGGC 59.449 50.000 0.00 0.00 39.32 4.85
7819 8954 5.300411 TGATGCACATTCTATGACCATCT 57.700 39.130 16.79 0.00 39.55 2.90
7918 9055 2.056359 TGAACCTAAGGGGGAAAACGA 58.944 47.619 0.00 0.00 40.03 3.85
7986 9135 5.299279 AGGTATTTGAATGCAACGGGAATAG 59.701 40.000 0.00 0.00 32.79 1.73
7991 9140 2.099098 GGAGGTATTTGAATGCAACGGG 59.901 50.000 0.00 0.00 32.79 5.28
7994 9143 3.190535 ACACGGAGGTATTTGAATGCAAC 59.809 43.478 0.00 0.00 32.79 4.17
7995 9144 3.417101 ACACGGAGGTATTTGAATGCAA 58.583 40.909 0.00 0.00 0.00 4.08
7999 9148 5.181245 CAGTTCAACACGGAGGTATTTGAAT 59.819 40.000 0.00 0.00 38.54 2.57
8002 9151 3.364964 GCAGTTCAACACGGAGGTATTTG 60.365 47.826 0.00 0.00 0.00 2.32
8003 9152 2.812011 GCAGTTCAACACGGAGGTATTT 59.188 45.455 0.00 0.00 0.00 1.40
8005 9154 1.346395 TGCAGTTCAACACGGAGGTAT 59.654 47.619 0.00 0.00 0.00 2.73
8007 9156 0.107410 TTGCAGTTCAACACGGAGGT 60.107 50.000 0.00 0.00 0.00 3.85
8015 9164 8.502161 AATATAAGACGTTTTTGCAGTTCAAC 57.498 30.769 0.00 0.00 33.73 3.18
8017 9166 9.820229 CTAAATATAAGACGTTTTTGCAGTTCA 57.180 29.630 0.00 0.00 0.00 3.18
8018 9167 9.821662 ACTAAATATAAGACGTTTTTGCAGTTC 57.178 29.630 0.00 0.00 0.00 3.01
8021 9170 9.262472 GTGACTAAATATAAGACGTTTTTGCAG 57.738 33.333 0.00 0.00 0.00 4.41
8027 9176 8.529476 ACCTCTGTGACTAAATATAAGACGTTT 58.471 33.333 0.00 0.00 0.00 3.60
8031 9195 9.953697 CAGTACCTCTGTGACTAAATATAAGAC 57.046 37.037 0.00 0.00 39.17 3.01
8055 9219 8.465201 TCAGATGCATGATATAAGCTACTACAG 58.535 37.037 2.46 0.00 0.00 2.74
8057 9221 8.246871 TGTCAGATGCATGATATAAGCTACTAC 58.753 37.037 2.46 0.00 0.00 2.73
8059 9223 7.237209 TGTCAGATGCATGATATAAGCTACT 57.763 36.000 2.46 0.00 0.00 2.57
8094 9300 8.877864 ACAAAACCTGATGGACAAAGATAATA 57.122 30.769 0.00 0.00 37.04 0.98
8144 9350 2.359900 GTTCCGCTGTCCATCATTTCT 58.640 47.619 0.00 0.00 0.00 2.52
8224 9430 8.062536 AGAATCTACAGTTGGTACTATCTCCTT 58.937 37.037 0.00 0.00 31.96 3.36
8283 9489 1.071605 ATTCGTCAAGCGTGCTCTTC 58.928 50.000 0.00 0.00 42.13 2.87
8293 9499 6.338146 TCATCTACCCAAACTATTCGTCAAG 58.662 40.000 0.00 0.00 0.00 3.02
8503 9716 5.239525 GTGCAAGTGGAAATAAACAGAGTCT 59.760 40.000 0.00 0.00 0.00 3.24
8507 9720 5.239306 CAGAGTGCAAGTGGAAATAAACAGA 59.761 40.000 0.00 0.00 0.00 3.41
8516 9729 4.563580 GGAGATTACAGAGTGCAAGTGGAA 60.564 45.833 0.00 0.00 0.00 3.53
8519 9732 4.180057 GAGGAGATTACAGAGTGCAAGTG 58.820 47.826 0.00 0.00 0.00 3.16
8542 9755 2.153645 TGCGCATCACTCATTGAAAGT 58.846 42.857 5.66 0.00 37.92 2.66
8547 9760 3.678915 TTGTATGCGCATCACTCATTG 57.321 42.857 29.11 0.00 0.00 2.82
8549 9762 3.940852 TCTTTTGTATGCGCATCACTCAT 59.059 39.130 29.11 3.98 0.00 2.90
8560 9773 6.142817 ACATTGAGAAACGTCTTTTGTATGC 58.857 36.000 0.00 0.00 32.80 3.14
8593 9806 6.581388 TGAGAACTTGGGGAGAATGAATAT 57.419 37.500 0.00 0.00 0.00 1.28
8596 9809 4.722526 TTGAGAACTTGGGGAGAATGAA 57.277 40.909 0.00 0.00 0.00 2.57
8620 9833 6.156949 TCTCCATTGTAGGAATAAGCAGAGTT 59.843 38.462 0.00 0.00 37.20 3.01
8621 9834 5.663106 TCTCCATTGTAGGAATAAGCAGAGT 59.337 40.000 0.00 0.00 37.20 3.24
8622 9835 6.166984 TCTCCATTGTAGGAATAAGCAGAG 57.833 41.667 0.00 0.00 37.20 3.35
8623 9836 6.384015 TCTTCTCCATTGTAGGAATAAGCAGA 59.616 38.462 0.00 0.00 37.20 4.26
8624 9837 6.586344 TCTTCTCCATTGTAGGAATAAGCAG 58.414 40.000 0.00 0.00 37.20 4.24
8625 9838 6.560003 TCTTCTCCATTGTAGGAATAAGCA 57.440 37.500 0.00 0.00 37.20 3.91
8679 9892 6.275335 GCTCTTTGGCTATGCAAAATAATGA 58.725 36.000 0.00 0.00 30.58 2.57
8685 9898 1.550072 GGGCTCTTTGGCTATGCAAAA 59.450 47.619 0.00 0.00 41.48 2.44
8686 9899 1.185315 GGGCTCTTTGGCTATGCAAA 58.815 50.000 0.00 0.00 41.48 3.68
8714 9927 2.183300 GCAGACGGCGACCATACA 59.817 61.111 16.62 0.00 0.00 2.29
8750 9963 5.106475 TGGTTGCACGATATCAGTAAAAACC 60.106 40.000 18.50 18.50 0.00 3.27
8751 9964 5.933790 TGGTTGCACGATATCAGTAAAAAC 58.066 37.500 3.12 7.00 0.00 2.43
8782 10080 9.308000 TCCACCTCATAATGTCTGTTAATTTTT 57.692 29.630 0.00 0.00 0.00 1.94
8802 10102 7.932134 TCATGGCTTCAAATATATATCCACCT 58.068 34.615 0.00 0.00 0.00 4.00
8853 10153 9.681692 CAATCAAACATCTCTTATTTTGTGTCA 57.318 29.630 0.00 0.00 32.02 3.58
8863 10163 6.656902 AGATGAGGCAATCAAACATCTCTTA 58.343 36.000 0.00 0.00 42.23 2.10
8867 10167 6.054295 GTCTAGATGAGGCAATCAAACATCT 58.946 40.000 0.00 0.00 45.85 2.90
8880 10180 5.420421 TCTTCTTCTGTTGGTCTAGATGAGG 59.580 44.000 0.00 0.00 31.43 3.86
8902 10202 0.682209 ATTGAAATGCGCAGGGCTCT 60.682 50.000 18.32 0.00 44.05 4.09
8936 10236 2.167398 TAGCCGAGTGGTTGGAGCAC 62.167 60.000 2.25 2.25 46.20 4.40
8963 10270 3.788227 ATAAGACTTGTGCCTGTGGAA 57.212 42.857 0.00 0.00 0.00 3.53
8970 10277 6.017852 GGCAAGATAGTAATAAGACTTGTGCC 60.018 42.308 0.00 0.00 37.57 5.01
8983 10290 3.259064 GTCGCAACTGGCAAGATAGTAA 58.741 45.455 0.00 0.00 45.17 2.24
8986 10293 0.647410 CGTCGCAACTGGCAAGATAG 59.353 55.000 0.00 0.00 45.17 2.08
8987 10294 0.037697 ACGTCGCAACTGGCAAGATA 60.038 50.000 0.00 0.00 45.17 1.98
8988 10295 1.301716 ACGTCGCAACTGGCAAGAT 60.302 52.632 0.00 0.00 45.17 2.40
8990 10297 2.249309 CACGTCGCAACTGGCAAG 59.751 61.111 0.00 0.00 45.17 4.01
8991 10298 3.947841 GCACGTCGCAACTGGCAA 61.948 61.111 5.30 0.00 45.17 4.52
9037 10344 7.284074 TGTGACTTTCTCTGGTTTTTATACCA 58.716 34.615 0.00 0.00 45.73 3.25
9049 10356 9.645059 TCACTCTAAATATTGTGACTTTCTCTG 57.355 33.333 2.99 0.00 34.94 3.35
9070 10377 7.565323 AAATTATGGAAGCTCAAGATCACTC 57.435 36.000 0.00 0.00 0.00 3.51
9157 10464 7.148390 GCTTACACCAGAATTAGAAGTTCTTCC 60.148 40.741 11.40 0.00 33.82 3.46
9159 10466 7.454225 AGCTTACACCAGAATTAGAAGTTCTT 58.546 34.615 11.40 0.00 33.82 2.52
9183 10490 3.560636 ACCGGATCAATTTAGGTGGAG 57.439 47.619 9.46 0.00 33.37 3.86
9196 10503 3.251004 GGATTGCATACAAGAACCGGATC 59.749 47.826 9.46 5.83 39.69 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.