Multiple sequence alignment - TraesCS1A01G293900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G293900 chr1A 100.000 4003 0 0 1 4003 489177482 489181484 0.000000e+00 7393.0
1 TraesCS1A01G293900 chr1A 86.499 837 105 5 1236 2071 489236336 489237165 0.000000e+00 913.0
2 TraesCS1A01G293900 chr1A 90.833 480 29 8 2310 2778 349296145 349295670 2.630000e-176 628.0
3 TraesCS1A01G293900 chr1A 80.551 581 94 13 1407 1984 489921881 489922445 2.860000e-116 429.0
4 TraesCS1A01G293900 chr1A 80.567 494 75 13 1416 1888 490019069 490019562 1.060000e-95 361.0
5 TraesCS1A01G293900 chr1A 87.571 177 16 6 956 1132 489236152 489236322 2.440000e-47 200.0
6 TraesCS1A01G293900 chr1A 84.456 193 25 4 2072 2261 489237202 489237392 6.830000e-43 185.0
7 TraesCS1A01G293900 chr1D 92.751 2828 154 20 1200 4003 396275656 396272856 0.000000e+00 4039.0
8 TraesCS1A01G293900 chr1D 81.707 574 93 6 1411 1984 395627877 395628438 6.060000e-128 468.0
9 TraesCS1A01G293900 chr1D 86.651 427 16 19 798 1187 396281397 396280975 6.140000e-118 435.0
10 TraesCS1A01G293900 chr1D 100.000 119 0 0 1 119 396282214 396282096 1.870000e-53 220.0
11 TraesCS1A01G293900 chr1D 88.281 128 11 1 364 487 396281564 396281437 2.490000e-32 150.0
12 TraesCS1A01G293900 chr1D 90.625 64 6 0 301 364 116458953 116459016 7.130000e-13 86.1
13 TraesCS1A01G293900 chr1B 92.211 1746 91 18 2276 4003 523379600 523377882 0.000000e+00 2429.0
14 TraesCS1A01G293900 chr1B 90.562 1674 102 21 2276 3930 525837287 525838923 0.000000e+00 2165.0
15 TraesCS1A01G293900 chr1B 86.370 1438 159 21 956 2391 523383769 523382367 0.000000e+00 1535.0
16 TraesCS1A01G293900 chr1B 86.411 1435 158 21 956 2388 525833124 525834523 0.000000e+00 1535.0
17 TraesCS1A01G293900 chr1B 86.124 836 113 2 1236 2071 525894437 525895269 0.000000e+00 898.0
18 TraesCS1A01G293900 chr1B 90.504 516 32 8 897 1399 258367630 258368141 0.000000e+00 665.0
19 TraesCS1A01G293900 chr1B 81.359 574 95 6 1411 1984 526378289 526378850 1.310000e-124 457.0
20 TraesCS1A01G293900 chr1B 85.650 223 27 5 2072 2289 525895306 525895528 3.110000e-56 230.0
21 TraesCS1A01G293900 chr1B 86.047 172 18 6 956 1127 525894253 525894418 3.180000e-41 180.0
22 TraesCS1A01G293900 chr1B 95.556 90 4 0 3914 4003 525839105 525839194 1.160000e-30 145.0
23 TraesCS1A01G293900 chr3A 89.815 1728 129 23 2297 4003 298792964 298794665 0.000000e+00 2172.0
24 TraesCS1A01G293900 chr3A 91.004 478 26 13 2304 2766 642607314 642607789 2.630000e-176 628.0
25 TraesCS1A01G293900 chr6B 90.029 1023 79 15 2304 3307 183181593 183182611 0.000000e+00 1303.0
26 TraesCS1A01G293900 chr6B 89.908 436 41 2 956 1391 262669266 262669698 3.490000e-155 558.0
27 TraesCS1A01G293900 chr6B 85.088 114 16 1 3672 3784 255097586 255097473 9.090000e-22 115.0
28 TraesCS1A01G293900 chr6B 90.541 74 5 2 4 77 120675346 120675275 3.290000e-16 97.1
29 TraesCS1A01G293900 chr7D 91.418 839 53 12 2304 3125 591720729 591719893 0.000000e+00 1133.0
30 TraesCS1A01G293900 chr7B 92.006 713 45 9 2603 3307 62677894 62678602 0.000000e+00 990.0
31 TraesCS1A01G293900 chr7B 92.584 445 29 3 956 1400 748321086 748321526 1.570000e-178 636.0
32 TraesCS1A01G293900 chr7B 89.910 446 39 5 956 1400 700100219 700099779 1.610000e-158 569.0
33 TraesCS1A01G293900 chrUn 91.324 657 37 13 2297 2935 101498820 101499474 0.000000e+00 880.0
34 TraesCS1A01G293900 chrUn 90.678 590 40 10 2304 2880 279892537 279893124 0.000000e+00 771.0
35 TraesCS1A01G293900 chrUn 90.678 590 40 10 2304 2880 323670523 323669936 0.000000e+00 771.0
36 TraesCS1A01G293900 chrUn 91.910 445 33 2 956 1400 118862094 118862535 1.580000e-173 619.0
37 TraesCS1A01G293900 chrUn 92.791 430 26 3 2882 3307 294272884 294273312 5.680000e-173 617.0
38 TraesCS1A01G293900 chrUn 91.211 421 26 3 3392 3809 101499495 101499907 2.700000e-156 562.0
39 TraesCS1A01G293900 chrUn 89.474 418 31 4 3397 3809 341499095 341499504 2.130000e-142 516.0
40 TraesCS1A01G293900 chrUn 89.021 419 32 4 3397 3809 230760659 230761069 1.280000e-139 507.0
41 TraesCS1A01G293900 chr5A 90.760 487 29 7 2310 2782 584085755 584085271 1.570000e-178 636.0
42 TraesCS1A01G293900 chr5A 92.188 64 5 0 301 364 10506597 10506534 1.530000e-14 91.6
43 TraesCS1A01G293900 chr5A 95.000 40 2 0 3720 3759 104464722 104464683 3.340000e-06 63.9
44 TraesCS1A01G293900 chr4B 90.144 416 30 4 3397 3809 430673224 430673631 7.620000e-147 531.0
45 TraesCS1A01G293900 chr4A 89.448 417 32 4 3397 3809 714668338 714668746 2.130000e-142 516.0
46 TraesCS1A01G293900 chr3B 91.691 337 25 2 956 1292 307381234 307380901 7.840000e-127 464.0
47 TraesCS1A01G293900 chr5D 83.920 398 61 2 1236 1633 109042013 109042407 1.050000e-100 377.0
48 TraesCS1A01G293900 chr5D 82.843 204 16 11 3672 3871 382016499 382016311 8.900000e-37 165.0
49 TraesCS1A01G293900 chr5D 90.625 64 6 0 301 364 398804776 398804713 7.130000e-13 86.1
50 TraesCS1A01G293900 chr2B 86.087 115 10 6 489 600 468551189 468551078 7.030000e-23 119.0
51 TraesCS1A01G293900 chr6D 92.308 65 4 1 1 65 50737884 50737947 1.530000e-14 91.6
52 TraesCS1A01G293900 chr5B 92.188 64 5 0 301 364 593472635 593472572 1.530000e-14 91.6
53 TraesCS1A01G293900 chr5B 92.188 64 5 0 301 364 593556645 593556582 1.530000e-14 91.6
54 TraesCS1A01G293900 chr4D 90.625 64 6 0 301 364 216324117 216324054 7.130000e-13 86.1
55 TraesCS1A01G293900 chr4D 90.476 42 4 0 3714 3755 280775437 280775478 5.590000e-04 56.5
56 TraesCS1A01G293900 chr3D 90.625 64 6 0 301 364 390098439 390098502 7.130000e-13 86.1
57 TraesCS1A01G293900 chr3D 85.542 83 9 3 295 376 246893028 246893108 2.560000e-12 84.2
58 TraesCS1A01G293900 chr2D 90.625 64 6 0 301 364 592583139 592583076 7.130000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G293900 chr1A 489177482 489181484 4002 False 7393.000000 7393 100.000000 1 4003 1 chr1A.!!$F1 4002
1 TraesCS1A01G293900 chr1A 489236152 489237392 1240 False 432.666667 913 86.175333 956 2261 3 chr1A.!!$F4 1305
2 TraesCS1A01G293900 chr1A 489921881 489922445 564 False 429.000000 429 80.551000 1407 1984 1 chr1A.!!$F2 577
3 TraesCS1A01G293900 chr1D 396272856 396275656 2800 True 4039.000000 4039 92.751000 1200 4003 1 chr1D.!!$R1 2803
4 TraesCS1A01G293900 chr1D 395627877 395628438 561 False 468.000000 468 81.707000 1411 1984 1 chr1D.!!$F2 573
5 TraesCS1A01G293900 chr1D 396280975 396282214 1239 True 268.333333 435 91.644000 1 1187 3 chr1D.!!$R2 1186
6 TraesCS1A01G293900 chr1B 523377882 523383769 5887 True 1982.000000 2429 89.290500 956 4003 2 chr1B.!!$R1 3047
7 TraesCS1A01G293900 chr1B 525833124 525839194 6070 False 1281.666667 2165 90.843000 956 4003 3 chr1B.!!$F3 3047
8 TraesCS1A01G293900 chr1B 258367630 258368141 511 False 665.000000 665 90.504000 897 1399 1 chr1B.!!$F1 502
9 TraesCS1A01G293900 chr1B 526378289 526378850 561 False 457.000000 457 81.359000 1411 1984 1 chr1B.!!$F2 573
10 TraesCS1A01G293900 chr1B 525894253 525895528 1275 False 436.000000 898 85.940333 956 2289 3 chr1B.!!$F4 1333
11 TraesCS1A01G293900 chr3A 298792964 298794665 1701 False 2172.000000 2172 89.815000 2297 4003 1 chr3A.!!$F1 1706
12 TraesCS1A01G293900 chr6B 183181593 183182611 1018 False 1303.000000 1303 90.029000 2304 3307 1 chr6B.!!$F1 1003
13 TraesCS1A01G293900 chr7D 591719893 591720729 836 True 1133.000000 1133 91.418000 2304 3125 1 chr7D.!!$R1 821
14 TraesCS1A01G293900 chr7B 62677894 62678602 708 False 990.000000 990 92.006000 2603 3307 1 chr7B.!!$F1 704
15 TraesCS1A01G293900 chrUn 279892537 279893124 587 False 771.000000 771 90.678000 2304 2880 1 chrUn.!!$F3 576
16 TraesCS1A01G293900 chrUn 323669936 323670523 587 True 771.000000 771 90.678000 2304 2880 1 chrUn.!!$R1 576
17 TraesCS1A01G293900 chrUn 101498820 101499907 1087 False 721.000000 880 91.267500 2297 3809 2 chrUn.!!$F6 1512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 496 0.032815 TGAGAACATTGGCGTCACGA 59.967 50.0 0.00 0.0 0.00 4.35 F
180 542 0.034863 TTTTAGCTTGGCGGTAGGGG 60.035 55.0 0.00 0.0 0.00 4.79 F
575 943 0.034896 ACGCGTTCAAATCAGGACCT 59.965 50.0 5.58 0.0 0.00 3.85 F
784 1152 0.107643 TCCACTCAACGCACATGGAA 59.892 50.0 0.00 0.0 36.51 3.53 F
1245 1650 0.238289 GGCACAACCTCATCAACGTG 59.762 55.0 0.00 0.0 34.51 4.49 F
2955 6334 0.674895 AGGCAAGATGAACACCGAGC 60.675 55.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1632 0.944386 ACACGTTGATGAGGTTGTGC 59.056 50.000 0.0 0.0 0.0 4.57 R
2091 2546 1.279840 GTCCACGCTTGCACAGAAC 59.720 57.895 0.0 0.0 0.0 3.01 R
2301 5642 2.493278 CCCACTCCATTGCAACTAAAGG 59.507 50.000 0.0 0.0 0.0 3.11 R
2769 6143 2.526304 TCAGCATCGTACCCATAAGC 57.474 50.000 0.0 0.0 0.0 3.09 R
2976 6355 3.067106 GGATGTCTGAGCGAACAAGAAA 58.933 45.455 0.0 0.0 0.0 2.52 R
3920 7312 4.469469 TTTCCCCCAAAATGAGAGTTCT 57.531 40.909 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.447838 GGCCGTCGCAAAGATGAGA 60.448 57.895 0.00 0.00 38.11 3.27
120 121 1.019278 GGCCGTCGCAAAGATGAGAA 61.019 55.000 0.00 0.00 37.11 2.87
126 488 3.725895 CGTCGCAAAGATGAGAACATTGG 60.726 47.826 0.00 0.00 37.11 3.16
127 489 2.162208 TCGCAAAGATGAGAACATTGGC 59.838 45.455 0.00 0.00 36.82 4.52
134 496 0.032815 TGAGAACATTGGCGTCACGA 59.967 50.000 0.00 0.00 0.00 4.35
141 503 2.964925 TGGCGTCACGACAGCAAC 60.965 61.111 0.00 0.00 41.22 4.17
152 514 1.730121 CGACAGCAACAATGGATGCAC 60.730 52.381 14.09 5.86 44.50 4.57
157 519 1.335780 GCAACAATGGATGCACGACAA 60.336 47.619 8.14 0.00 41.94 3.18
176 538 3.633065 ACAAAGTTTTTAGCTTGGCGGTA 59.367 39.130 0.00 0.00 0.00 4.02
180 542 0.034863 TTTTAGCTTGGCGGTAGGGG 60.035 55.000 0.00 0.00 0.00 4.79
182 544 1.335132 TTAGCTTGGCGGTAGGGGAG 61.335 60.000 0.00 0.00 0.00 4.30
190 552 1.054978 GCGGTAGGGGAGGGAGAAAT 61.055 60.000 0.00 0.00 0.00 2.17
194 556 1.495148 GTAGGGGAGGGAGAAATTGGG 59.505 57.143 0.00 0.00 0.00 4.12
195 557 0.123266 AGGGGAGGGAGAAATTGGGA 59.877 55.000 0.00 0.00 0.00 4.37
197 559 1.145945 GGGGAGGGAGAAATTGGGATC 59.854 57.143 0.00 0.00 0.00 3.36
198 560 1.145945 GGGAGGGAGAAATTGGGATCC 59.854 57.143 1.92 1.92 0.00 3.36
202 564 1.477014 GGGAGAAATTGGGATCCCGAC 60.477 57.143 24.05 10.93 41.98 4.79
210 572 3.090532 GGATCCCGACCAAGGCCT 61.091 66.667 0.00 0.00 0.00 5.19
229 591 2.169769 CCTTGGCCTATCGTAGAAACCA 59.830 50.000 3.32 0.00 43.58 3.67
230 592 3.181454 CCTTGGCCTATCGTAGAAACCAT 60.181 47.826 3.32 0.00 43.58 3.55
233 595 2.295349 GGCCTATCGTAGAAACCATCGA 59.705 50.000 0.00 0.00 43.58 3.59
235 597 4.557205 GCCTATCGTAGAAACCATCGATT 58.443 43.478 0.00 0.00 43.58 3.34
242 605 6.595794 TCGTAGAAACCATCGATTTTGTTTC 58.404 36.000 24.12 24.12 44.23 2.78
249 612 2.392933 TCGATTTTGTTTCGTGCCAC 57.607 45.000 0.00 0.00 37.82 5.01
275 639 2.186903 CGGTCCTAGCATGCCGTT 59.813 61.111 15.66 0.00 39.41 4.44
284 648 2.435938 CATGCCGTTGTACCCGCT 60.436 61.111 0.00 0.00 0.00 5.52
291 655 0.806868 CGTTGTACCCGCTCTAGTCA 59.193 55.000 0.00 0.00 0.00 3.41
302 666 3.181482 CCGCTCTAGTCATGTTCATGTCT 60.181 47.826 14.45 14.45 0.00 3.41
303 667 4.041049 CGCTCTAGTCATGTTCATGTCTC 58.959 47.826 13.70 6.57 0.00 3.36
304 668 4.041049 GCTCTAGTCATGTTCATGTCTCG 58.959 47.826 13.70 9.45 0.00 4.04
305 669 4.201960 GCTCTAGTCATGTTCATGTCTCGA 60.202 45.833 13.70 12.34 0.00 4.04
306 670 5.677344 GCTCTAGTCATGTTCATGTCTCGAA 60.677 44.000 13.70 0.33 0.00 3.71
307 671 6.456795 TCTAGTCATGTTCATGTCTCGAAT 57.543 37.500 13.70 0.00 0.00 3.34
308 672 7.568199 TCTAGTCATGTTCATGTCTCGAATA 57.432 36.000 13.70 0.00 0.00 1.75
309 673 8.171164 TCTAGTCATGTTCATGTCTCGAATAT 57.829 34.615 13.70 0.00 0.00 1.28
310 674 9.284968 TCTAGTCATGTTCATGTCTCGAATATA 57.715 33.333 13.70 0.00 0.00 0.86
311 675 9.335891 CTAGTCATGTTCATGTCTCGAATATAC 57.664 37.037 13.70 2.21 0.00 1.47
312 676 7.716612 AGTCATGTTCATGTCTCGAATATACA 58.283 34.615 11.73 0.00 0.00 2.29
313 677 8.363390 AGTCATGTTCATGTCTCGAATATACAT 58.637 33.333 11.73 0.00 34.22 2.29
321 685 6.769608 TGTCTCGAATATACATGAATGTGC 57.230 37.500 0.00 0.00 41.89 4.57
322 686 6.279882 TGTCTCGAATATACATGAATGTGCA 58.720 36.000 0.00 0.00 41.89 4.57
323 687 6.930722 TGTCTCGAATATACATGAATGTGCAT 59.069 34.615 0.00 0.00 41.89 3.96
324 688 8.087750 TGTCTCGAATATACATGAATGTGCATA 58.912 33.333 0.00 0.00 41.89 3.14
325 689 9.091784 GTCTCGAATATACATGAATGTGCATAT 57.908 33.333 0.00 0.00 41.89 1.78
326 690 9.305925 TCTCGAATATACATGAATGTGCATATC 57.694 33.333 0.00 0.00 41.89 1.63
327 691 9.090692 CTCGAATATACATGAATGTGCATATCA 57.909 33.333 0.00 0.00 41.89 2.15
328 692 9.603921 TCGAATATACATGAATGTGCATATCAT 57.396 29.630 0.00 1.25 41.89 2.45
356 720 7.803279 TTAAAGAAGAAAGGGAAAGAGTGTC 57.197 36.000 0.00 0.00 0.00 3.67
357 721 5.638530 AAGAAGAAAGGGAAAGAGTGTCT 57.361 39.130 0.00 0.00 0.00 3.41
358 722 5.638530 AGAAGAAAGGGAAAGAGTGTCTT 57.361 39.130 0.00 0.00 38.59 3.01
359 723 5.616270 AGAAGAAAGGGAAAGAGTGTCTTC 58.384 41.667 0.00 0.00 35.27 2.87
360 724 5.131142 AGAAGAAAGGGAAAGAGTGTCTTCA 59.869 40.000 11.77 0.00 41.14 3.02
361 725 4.709250 AGAAAGGGAAAGAGTGTCTTCAC 58.291 43.478 0.00 0.00 44.15 3.18
362 726 3.493767 AAGGGAAAGAGTGTCTTCACC 57.506 47.619 0.00 0.00 44.83 4.02
363 727 2.408565 AGGGAAAGAGTGTCTTCACCA 58.591 47.619 10.48 0.00 44.83 4.17
364 728 2.370189 AGGGAAAGAGTGTCTTCACCAG 59.630 50.000 10.48 0.00 44.83 4.00
365 729 2.104963 GGGAAAGAGTGTCTTCACCAGT 59.895 50.000 12.02 0.00 44.83 4.00
366 730 3.394719 GGAAAGAGTGTCTTCACCAGTC 58.605 50.000 7.53 0.00 44.83 3.51
367 731 2.802787 AAGAGTGTCTTCACCAGTCG 57.197 50.000 0.00 0.00 44.83 4.18
368 732 1.693627 AGAGTGTCTTCACCAGTCGT 58.306 50.000 0.00 0.00 44.83 4.34
369 733 1.338337 AGAGTGTCTTCACCAGTCGTG 59.662 52.381 0.00 0.00 44.83 4.35
370 734 1.067212 GAGTGTCTTCACCAGTCGTGT 59.933 52.381 0.00 0.00 44.83 4.49
371 735 1.480954 AGTGTCTTCACCAGTCGTGTT 59.519 47.619 0.00 0.00 44.83 3.32
372 736 1.859080 GTGTCTTCACCAGTCGTGTTC 59.141 52.381 0.00 0.00 43.51 3.18
373 737 1.478916 TGTCTTCACCAGTCGTGTTCA 59.521 47.619 0.00 0.00 43.51 3.18
374 738 2.102420 TGTCTTCACCAGTCGTGTTCAT 59.898 45.455 0.00 0.00 43.51 2.57
375 739 2.476619 GTCTTCACCAGTCGTGTTCATG 59.523 50.000 0.00 0.00 43.51 3.07
376 740 2.102420 TCTTCACCAGTCGTGTTCATGT 59.898 45.455 0.00 0.00 43.51 3.21
377 741 2.148916 TCACCAGTCGTGTTCATGTC 57.851 50.000 0.00 0.00 43.51 3.06
397 761 0.958822 AATGTGCTCGGGAACAAACC 59.041 50.000 0.00 0.00 34.21 3.27
399 763 0.817634 TGTGCTCGGGAACAAACCAG 60.818 55.000 0.00 0.00 0.00 4.00
408 772 3.230976 GGGAACAAACCAGGTCTTTCAT 58.769 45.455 0.00 0.00 0.00 2.57
435 799 1.574526 CCTCCCCCAAAGAGGCATGA 61.575 60.000 0.00 0.00 44.30 3.07
443 807 3.512724 CCCAAAGAGGCATGAAAGATTGT 59.487 43.478 0.00 0.00 35.39 2.71
453 817 5.402398 GCATGAAAGATTGTTGAACTACCC 58.598 41.667 0.00 0.00 0.00 3.69
459 823 5.762179 AGATTGTTGAACTACCCTGATGA 57.238 39.130 0.00 0.00 0.00 2.92
481 849 6.542821 TGACCAAAGGTGTATTCAATCTTCT 58.457 36.000 0.00 0.00 35.25 2.85
482 850 7.685481 TGACCAAAGGTGTATTCAATCTTCTA 58.315 34.615 0.00 0.00 35.25 2.10
483 851 8.328758 TGACCAAAGGTGTATTCAATCTTCTAT 58.671 33.333 0.00 0.00 35.25 1.98
484 852 9.178758 GACCAAAGGTGTATTCAATCTTCTATT 57.821 33.333 0.00 0.00 35.25 1.73
485 853 9.533831 ACCAAAGGTGTATTCAATCTTCTATTT 57.466 29.630 0.00 0.00 32.98 1.40
513 881 5.420725 AAAAATAAGACCAATCCAAGGGC 57.579 39.130 0.00 0.00 0.00 5.19
514 882 2.348411 ATAAGACCAATCCAAGGGCG 57.652 50.000 0.00 0.00 39.93 6.13
515 883 1.281419 TAAGACCAATCCAAGGGCGA 58.719 50.000 0.00 0.00 39.93 5.54
516 884 0.404040 AAGACCAATCCAAGGGCGAA 59.596 50.000 0.00 0.00 39.93 4.70
517 885 0.322546 AGACCAATCCAAGGGCGAAC 60.323 55.000 0.00 0.00 39.93 3.95
518 886 1.304134 ACCAATCCAAGGGCGAACC 60.304 57.895 0.00 0.00 40.67 3.62
527 895 2.349755 GGGCGAACCTAGTTGGCA 59.650 61.111 14.89 0.00 46.30 4.92
528 896 1.077716 GGGCGAACCTAGTTGGCAT 60.078 57.895 14.89 0.00 46.30 4.40
529 897 0.679960 GGGCGAACCTAGTTGGCATT 60.680 55.000 14.89 0.00 46.30 3.56
530 898 1.173913 GGCGAACCTAGTTGGCATTT 58.826 50.000 14.89 0.00 46.30 2.32
531 899 1.544246 GGCGAACCTAGTTGGCATTTT 59.456 47.619 14.89 0.00 46.30 1.82
532 900 2.029380 GGCGAACCTAGTTGGCATTTTT 60.029 45.455 14.89 0.00 46.30 1.94
551 919 4.985044 TTTTTAGAAGAAACTCCGCGAG 57.015 40.909 8.23 5.77 35.52 5.03
552 920 1.992170 TTAGAAGAAACTCCGCGAGC 58.008 50.000 8.23 0.00 32.04 5.03
553 921 0.885879 TAGAAGAAACTCCGCGAGCA 59.114 50.000 8.23 0.00 32.04 4.26
554 922 0.247736 AGAAGAAACTCCGCGAGCAT 59.752 50.000 8.23 0.00 32.04 3.79
555 923 0.647925 GAAGAAACTCCGCGAGCATC 59.352 55.000 8.23 5.48 32.04 3.91
556 924 0.037326 AAGAAACTCCGCGAGCATCA 60.037 50.000 8.23 0.00 32.04 3.07
557 925 0.737715 AGAAACTCCGCGAGCATCAC 60.738 55.000 8.23 0.00 32.04 3.06
558 926 2.014093 GAAACTCCGCGAGCATCACG 62.014 60.000 8.23 0.00 40.96 4.35
569 937 3.674225 GCATCACGCGTTCAAATCA 57.326 47.368 10.22 0.00 0.00 2.57
570 938 1.527696 GCATCACGCGTTCAAATCAG 58.472 50.000 10.22 0.00 0.00 2.90
571 939 1.791555 GCATCACGCGTTCAAATCAGG 60.792 52.381 10.22 0.00 0.00 3.86
572 940 1.731709 CATCACGCGTTCAAATCAGGA 59.268 47.619 10.22 0.00 0.00 3.86
573 941 1.144969 TCACGCGTTCAAATCAGGAC 58.855 50.000 10.22 0.00 0.00 3.85
574 942 0.165944 CACGCGTTCAAATCAGGACC 59.834 55.000 10.22 0.00 0.00 4.46
575 943 0.034896 ACGCGTTCAAATCAGGACCT 59.965 50.000 5.58 0.00 0.00 3.85
576 944 1.274167 ACGCGTTCAAATCAGGACCTA 59.726 47.619 5.58 0.00 0.00 3.08
577 945 2.289195 ACGCGTTCAAATCAGGACCTAA 60.289 45.455 5.58 0.00 0.00 2.69
578 946 2.739913 CGCGTTCAAATCAGGACCTAAA 59.260 45.455 0.00 0.00 0.00 1.85
579 947 3.187637 CGCGTTCAAATCAGGACCTAAAA 59.812 43.478 0.00 0.00 0.00 1.52
580 948 4.142687 CGCGTTCAAATCAGGACCTAAAAT 60.143 41.667 0.00 0.00 0.00 1.82
581 949 5.332707 GCGTTCAAATCAGGACCTAAAATC 58.667 41.667 0.00 0.00 0.00 2.17
582 950 5.560148 CGTTCAAATCAGGACCTAAAATCG 58.440 41.667 0.00 0.00 0.00 3.34
583 951 5.447279 CGTTCAAATCAGGACCTAAAATCGG 60.447 44.000 0.00 0.00 0.00 4.18
584 952 5.429681 TCAAATCAGGACCTAAAATCGGA 57.570 39.130 0.00 0.00 0.00 4.55
585 953 6.001449 TCAAATCAGGACCTAAAATCGGAT 57.999 37.500 0.00 0.00 0.00 4.18
586 954 5.822519 TCAAATCAGGACCTAAAATCGGATG 59.177 40.000 0.00 0.00 0.00 3.51
587 955 3.838244 TCAGGACCTAAAATCGGATGG 57.162 47.619 0.00 0.00 0.00 3.51
588 956 2.438021 TCAGGACCTAAAATCGGATGGG 59.562 50.000 0.00 0.00 0.00 4.00
589 957 1.143073 AGGACCTAAAATCGGATGGGC 59.857 52.381 0.00 0.00 0.00 5.36
590 958 1.143073 GGACCTAAAATCGGATGGGCT 59.857 52.381 0.00 0.00 0.00 5.19
591 959 2.222027 GACCTAAAATCGGATGGGCTG 58.778 52.381 0.00 0.00 0.00 4.85
592 960 1.133792 ACCTAAAATCGGATGGGCTGG 60.134 52.381 0.00 0.00 0.00 4.85
593 961 0.954452 CTAAAATCGGATGGGCTGGC 59.046 55.000 0.00 0.00 0.00 4.85
594 962 0.257328 TAAAATCGGATGGGCTGGCA 59.743 50.000 2.88 0.00 0.00 4.92
595 963 1.039233 AAAATCGGATGGGCTGGCAG 61.039 55.000 10.94 10.94 0.00 4.85
596 964 4.575973 ATCGGATGGGCTGGCAGC 62.576 66.667 30.93 30.93 41.46 5.25
599 967 3.455469 GGATGGGCTGGCAGCAAC 61.455 66.667 37.49 29.14 44.75 4.17
600 968 2.677524 GATGGGCTGGCAGCAACA 60.678 61.111 37.49 33.15 44.75 3.33
601 969 2.678934 ATGGGCTGGCAGCAACAG 60.679 61.111 37.49 2.97 44.75 3.16
602 970 4.980702 TGGGCTGGCAGCAACAGG 62.981 66.667 37.49 2.15 44.75 4.00
603 971 4.982701 GGGCTGGCAGCAACAGGT 62.983 66.667 37.49 0.00 44.75 4.00
604 972 3.368571 GGCTGGCAGCAACAGGTC 61.369 66.667 37.49 17.05 44.75 3.85
605 973 3.730761 GCTGGCAGCAACAGGTCG 61.731 66.667 33.33 0.00 41.89 4.79
606 974 2.031012 CTGGCAGCAACAGGTCGA 59.969 61.111 0.00 0.00 32.38 4.20
607 975 2.280797 TGGCAGCAACAGGTCGAC 60.281 61.111 7.13 7.13 0.00 4.20
608 976 3.414700 GGCAGCAACAGGTCGACG 61.415 66.667 9.92 0.00 0.00 5.12
609 977 4.077188 GCAGCAACAGGTCGACGC 62.077 66.667 9.92 6.88 0.00 5.19
610 978 2.356313 CAGCAACAGGTCGACGCT 60.356 61.111 9.92 9.30 0.00 5.07
611 979 2.049063 AGCAACAGGTCGACGCTC 60.049 61.111 9.92 0.00 0.00 5.03
612 980 2.049063 GCAACAGGTCGACGCTCT 60.049 61.111 9.92 0.00 0.00 4.09
613 981 2.089349 GCAACAGGTCGACGCTCTC 61.089 63.158 9.92 0.00 0.00 3.20
614 982 1.285950 CAACAGGTCGACGCTCTCA 59.714 57.895 9.92 0.00 0.00 3.27
615 983 0.318699 CAACAGGTCGACGCTCTCAA 60.319 55.000 9.92 0.00 0.00 3.02
616 984 0.603569 AACAGGTCGACGCTCTCAAT 59.396 50.000 9.92 0.00 0.00 2.57
617 985 0.171455 ACAGGTCGACGCTCTCAATC 59.829 55.000 9.92 0.00 0.00 2.67
618 986 0.453793 CAGGTCGACGCTCTCAATCT 59.546 55.000 9.92 0.00 0.00 2.40
619 987 1.135257 CAGGTCGACGCTCTCAATCTT 60.135 52.381 9.92 0.00 0.00 2.40
620 988 1.133407 AGGTCGACGCTCTCAATCTTC 59.867 52.381 9.92 0.00 0.00 2.87
621 989 1.551145 GTCGACGCTCTCAATCTTCC 58.449 55.000 0.00 0.00 0.00 3.46
622 990 1.135373 GTCGACGCTCTCAATCTTCCA 60.135 52.381 0.00 0.00 0.00 3.53
623 991 1.544246 TCGACGCTCTCAATCTTCCAA 59.456 47.619 0.00 0.00 0.00 3.53
624 992 2.166459 TCGACGCTCTCAATCTTCCAAT 59.834 45.455 0.00 0.00 0.00 3.16
625 993 2.932614 CGACGCTCTCAATCTTCCAATT 59.067 45.455 0.00 0.00 0.00 2.32
626 994 3.000724 CGACGCTCTCAATCTTCCAATTC 59.999 47.826 0.00 0.00 0.00 2.17
627 995 4.187694 GACGCTCTCAATCTTCCAATTCT 58.812 43.478 0.00 0.00 0.00 2.40
628 996 3.937706 ACGCTCTCAATCTTCCAATTCTG 59.062 43.478 0.00 0.00 0.00 3.02
629 997 4.186926 CGCTCTCAATCTTCCAATTCTGA 58.813 43.478 0.00 0.00 0.00 3.27
630 998 4.633126 CGCTCTCAATCTTCCAATTCTGAA 59.367 41.667 0.00 0.00 0.00 3.02
631 999 5.122869 CGCTCTCAATCTTCCAATTCTGAAA 59.877 40.000 0.00 0.00 0.00 2.69
632 1000 6.348786 CGCTCTCAATCTTCCAATTCTGAAAA 60.349 38.462 0.00 0.00 0.00 2.29
633 1001 7.028361 GCTCTCAATCTTCCAATTCTGAAAAG 58.972 38.462 0.00 0.00 0.00 2.27
634 1002 7.094463 GCTCTCAATCTTCCAATTCTGAAAAGA 60.094 37.037 5.10 5.10 32.28 2.52
635 1003 8.696043 TCTCAATCTTCCAATTCTGAAAAGAA 57.304 30.769 6.40 3.99 31.82 2.52
636 1004 8.790718 TCTCAATCTTCCAATTCTGAAAAGAAG 58.209 33.333 15.63 15.63 31.82 2.85
637 1005 8.696043 TCAATCTTCCAATTCTGAAAAGAAGA 57.304 30.769 21.78 21.78 42.64 2.87
638 1006 9.135189 TCAATCTTCCAATTCTGAAAAGAAGAA 57.865 29.630 22.65 11.76 41.99 2.52
639 1007 9.189723 CAATCTTCCAATTCTGAAAAGAAGAAC 57.810 33.333 22.65 0.00 41.99 3.01
640 1008 8.703378 ATCTTCCAATTCTGAAAAGAAGAACT 57.297 30.769 22.65 12.22 41.99 3.01
641 1009 7.934457 TCTTCCAATTCTGAAAAGAAGAACTG 58.066 34.615 19.31 0.00 37.41 3.16
642 1010 7.557719 TCTTCCAATTCTGAAAAGAAGAACTGT 59.442 33.333 19.31 0.00 37.41 3.55
643 1011 7.031226 TCCAATTCTGAAAAGAAGAACTGTG 57.969 36.000 0.00 0.00 36.52 3.66
644 1012 6.603201 TCCAATTCTGAAAAGAAGAACTGTGT 59.397 34.615 0.00 0.00 36.52 3.72
645 1013 6.914757 CCAATTCTGAAAAGAAGAACTGTGTC 59.085 38.462 0.00 0.00 36.52 3.67
646 1014 7.201767 CCAATTCTGAAAAGAAGAACTGTGTCT 60.202 37.037 0.00 0.00 36.52 3.41
647 1015 7.872113 ATTCTGAAAAGAAGAACTGTGTCTT 57.128 32.000 0.00 5.36 40.62 3.01
648 1016 7.687941 TTCTGAAAAGAAGAACTGTGTCTTT 57.312 32.000 7.98 7.98 42.07 2.52
650 1018 8.786826 TCTGAAAAGAAGAACTGTGTCTTTTA 57.213 30.769 18.98 8.26 46.43 1.52
651 1019 9.396022 TCTGAAAAGAAGAACTGTGTCTTTTAT 57.604 29.630 18.98 6.50 46.43 1.40
683 1051 9.645059 TGAAAAACAAACAAATGTGTCTATTCA 57.355 25.926 0.00 0.00 36.80 2.57
684 1052 9.900264 GAAAAACAAACAAATGTGTCTATTCAC 57.100 29.630 0.00 0.00 36.80 3.18
685 1053 8.419076 AAAACAAACAAATGTGTCTATTCACC 57.581 30.769 0.00 0.00 36.80 4.02
686 1054 5.757886 ACAAACAAATGTGTCTATTCACCG 58.242 37.500 0.00 0.00 36.80 4.94
687 1055 5.153513 CAAACAAATGTGTCTATTCACCGG 58.846 41.667 0.00 0.00 36.80 5.28
688 1056 4.280436 ACAAATGTGTCTATTCACCGGA 57.720 40.909 9.46 0.00 37.51 5.14
689 1057 4.253685 ACAAATGTGTCTATTCACCGGAG 58.746 43.478 9.46 0.00 37.51 4.63
690 1058 4.020573 ACAAATGTGTCTATTCACCGGAGA 60.021 41.667 9.46 1.33 37.51 3.71
691 1059 4.392921 AATGTGTCTATTCACCGGAGAG 57.607 45.455 9.46 0.00 37.51 3.20
692 1060 1.476891 TGTGTCTATTCACCGGAGAGC 59.523 52.381 9.46 0.00 37.51 4.09
693 1061 1.751924 GTGTCTATTCACCGGAGAGCT 59.248 52.381 9.46 0.00 32.81 4.09
694 1062 2.025155 TGTCTATTCACCGGAGAGCTC 58.975 52.381 9.46 5.27 0.00 4.09
695 1063 1.338655 GTCTATTCACCGGAGAGCTCC 59.661 57.143 9.46 6.46 46.18 4.70
704 1072 3.991242 GGAGAGCTCCGGAATAACC 57.009 57.895 10.93 1.95 40.36 2.85
727 1095 4.675510 GTTCCATAACGTTCGGATAGACA 58.324 43.478 17.45 2.86 0.00 3.41
728 1096 4.987408 TCCATAACGTTCGGATAGACAA 57.013 40.909 13.84 0.00 0.00 3.18
729 1097 4.928601 TCCATAACGTTCGGATAGACAAG 58.071 43.478 13.84 0.00 0.00 3.16
730 1098 4.049186 CCATAACGTTCGGATAGACAAGG 58.951 47.826 2.82 0.00 0.00 3.61
731 1099 2.005971 AACGTTCGGATAGACAAGGC 57.994 50.000 0.00 0.00 0.00 4.35
732 1100 0.179145 ACGTTCGGATAGACAAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
733 1101 0.179145 CGTTCGGATAGACAAGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
734 1102 1.278238 GTTCGGATAGACAAGGCGTG 58.722 55.000 0.00 0.00 0.00 5.34
735 1103 0.459585 TTCGGATAGACAAGGCGTGC 60.460 55.000 0.00 0.00 0.00 5.34
736 1104 1.141881 CGGATAGACAAGGCGTGCT 59.858 57.895 0.00 1.62 0.00 4.40
737 1105 1.148157 CGGATAGACAAGGCGTGCTG 61.148 60.000 0.00 0.00 0.00 4.41
738 1106 1.432270 GGATAGACAAGGCGTGCTGC 61.432 60.000 0.00 0.00 45.38 5.25
739 1107 0.460987 GATAGACAAGGCGTGCTGCT 60.461 55.000 0.00 0.00 45.43 4.24
753 1121 1.374758 CTGCTCAGTTCGACCCACC 60.375 63.158 0.00 0.00 0.00 4.61
784 1152 0.107643 TCCACTCAACGCACATGGAA 59.892 50.000 0.00 0.00 36.51 3.53
785 1153 0.950836 CCACTCAACGCACATGGAAA 59.049 50.000 0.00 0.00 31.69 3.13
786 1154 1.336440 CCACTCAACGCACATGGAAAA 59.664 47.619 0.00 0.00 31.69 2.29
787 1155 2.605338 CCACTCAACGCACATGGAAAAG 60.605 50.000 0.00 0.00 31.69 2.27
788 1156 1.001378 ACTCAACGCACATGGAAAAGC 60.001 47.619 0.00 0.00 0.00 3.51
789 1157 0.313672 TCAACGCACATGGAAAAGCC 59.686 50.000 0.00 0.00 37.10 4.35
790 1158 0.314935 CAACGCACATGGAAAAGCCT 59.685 50.000 0.00 0.00 37.63 4.58
791 1159 1.539388 CAACGCACATGGAAAAGCCTA 59.461 47.619 0.00 0.00 37.63 3.93
792 1160 2.128771 ACGCACATGGAAAAGCCTAT 57.871 45.000 0.00 0.00 37.63 2.57
793 1161 1.745087 ACGCACATGGAAAAGCCTATG 59.255 47.619 0.00 0.00 37.63 2.23
794 1162 2.016318 CGCACATGGAAAAGCCTATGA 58.984 47.619 0.00 0.00 37.63 2.15
795 1163 2.423185 CGCACATGGAAAAGCCTATGAA 59.577 45.455 0.00 0.00 37.63 2.57
796 1164 3.119531 CGCACATGGAAAAGCCTATGAAA 60.120 43.478 0.00 0.00 37.63 2.69
832 1200 1.237285 GCTGCGTGAACCAAGTCCAT 61.237 55.000 0.00 0.00 0.00 3.41
851 1219 1.228459 GTGAACCAACCACTCCCCC 60.228 63.158 0.00 0.00 0.00 5.40
868 1236 1.045350 CCCATCCTCTGCTTCTCCGA 61.045 60.000 0.00 0.00 0.00 4.55
872 1240 1.852633 TCCTCTGCTTCTCCGATTCA 58.147 50.000 0.00 0.00 0.00 2.57
891 1259 1.425448 CACTTCCAAAACCCTCTCCCT 59.575 52.381 0.00 0.00 0.00 4.20
895 1263 3.238788 TCCAAAACCCTCTCCCTTTTC 57.761 47.619 0.00 0.00 0.00 2.29
1026 1431 4.609247 CGGATCTCGACGGCGGAC 62.609 72.222 12.58 3.83 42.43 4.79
1245 1650 0.238289 GGCACAACCTCATCAACGTG 59.762 55.000 0.00 0.00 34.51 4.49
1582 1987 1.595109 CAGCTCAGCGTGGTCAACA 60.595 57.895 0.00 0.00 0.00 3.33
1641 2046 2.348888 CGGGGAGTGGTACGAGCTT 61.349 63.158 0.00 0.00 0.00 3.74
1707 2120 3.060866 GAGGTGCTGGACTTCGGT 58.939 61.111 0.00 0.00 0.00 4.69
1758 2171 2.264794 GCCATCAACGTCGACCCT 59.735 61.111 10.58 0.00 0.00 4.34
1810 2223 3.647649 CTGCCGGCAGACGTCATGA 62.648 63.158 46.72 13.46 46.30 3.07
1815 2228 1.154205 CGGCAGACGTCATGATTCCC 61.154 60.000 19.50 8.42 37.93 3.97
2071 2526 1.762957 ACTTGCTGTACCTCACTGTGT 59.237 47.619 7.79 0.00 0.00 3.72
2072 2527 2.224066 ACTTGCTGTACCTCACTGTGTC 60.224 50.000 7.79 0.00 0.00 3.67
2073 2528 1.704641 TGCTGTACCTCACTGTGTCT 58.295 50.000 7.79 0.00 0.00 3.41
2074 2529 1.341209 TGCTGTACCTCACTGTGTCTG 59.659 52.381 7.79 0.47 0.00 3.51
2075 2530 1.341531 GCTGTACCTCACTGTGTCTGT 59.658 52.381 7.79 6.31 0.00 3.41
2076 2531 2.864097 GCTGTACCTCACTGTGTCTGTG 60.864 54.545 7.79 1.37 35.20 3.66
2269 2731 6.029346 ACCCATTTCTCTTTAGTTGCAATG 57.971 37.500 0.59 0.00 0.00 2.82
2301 5642 7.313646 TGTCTATCTAAGTGTTTGAGTACTGC 58.686 38.462 0.00 0.00 0.00 4.40
2348 5704 6.674694 AAGATTGTAGACAATGCAGTGATC 57.325 37.500 22.73 14.11 45.72 2.92
2349 5705 5.987098 AGATTGTAGACAATGCAGTGATCT 58.013 37.500 22.73 20.01 45.72 2.75
2350 5706 6.047870 AGATTGTAGACAATGCAGTGATCTC 58.952 40.000 22.73 8.20 45.72 2.75
2351 5707 5.411831 TTGTAGACAATGCAGTGATCTCT 57.588 39.130 22.73 15.43 0.00 3.10
2352 5708 5.411831 TGTAGACAATGCAGTGATCTCTT 57.588 39.130 22.73 0.00 0.00 2.85
2353 5709 6.530019 TGTAGACAATGCAGTGATCTCTTA 57.470 37.500 22.73 3.82 0.00 2.10
2354 5710 6.333416 TGTAGACAATGCAGTGATCTCTTAC 58.667 40.000 22.73 13.98 0.00 2.34
2355 5711 5.674052 AGACAATGCAGTGATCTCTTACT 57.326 39.130 22.73 0.00 0.00 2.24
2356 5712 5.417811 AGACAATGCAGTGATCTCTTACTG 58.582 41.667 22.73 6.56 45.40 2.74
2357 5713 4.511527 ACAATGCAGTGATCTCTTACTGG 58.488 43.478 22.73 0.00 43.41 4.00
2358 5714 4.019860 ACAATGCAGTGATCTCTTACTGGT 60.020 41.667 22.73 0.00 43.41 4.00
2359 5715 3.876274 TGCAGTGATCTCTTACTGGTC 57.124 47.619 11.62 0.00 43.41 4.02
2360 5716 3.165071 TGCAGTGATCTCTTACTGGTCA 58.835 45.455 11.62 1.56 43.41 4.02
2361 5717 3.056536 TGCAGTGATCTCTTACTGGTCAC 60.057 47.826 11.62 0.00 43.41 3.67
2373 5729 9.290988 TCTCTTACTGGTCACTAAGATATCATC 57.709 37.037 5.32 0.00 30.37 2.92
2426 5783 7.100458 ACACAAATTATTATCCCACTTCTGC 57.900 36.000 0.00 0.00 0.00 4.26
2448 5805 4.562757 GCCCCTGTTTATTTTCTTGGGTTC 60.563 45.833 0.00 0.00 34.18 3.62
2572 5932 2.107552 TCGAGGGTTCCCTTGAAACATT 59.892 45.455 21.79 0.00 42.07 2.71
2587 5947 6.083098 TGAAACATTTTCATGGTGGTGTAG 57.917 37.500 0.00 0.00 34.27 2.74
2588 5948 5.596361 TGAAACATTTTCATGGTGGTGTAGT 59.404 36.000 0.00 0.00 34.27 2.73
2589 5949 5.452078 AACATTTTCATGGTGGTGTAGTG 57.548 39.130 0.00 0.00 34.27 2.74
2590 5950 4.724399 ACATTTTCATGGTGGTGTAGTGA 58.276 39.130 0.00 0.00 34.27 3.41
2631 5998 2.614057 CAAGGTTCTCGTTGCTTTGACT 59.386 45.455 0.00 0.00 33.73 3.41
2637 6004 3.120792 TCTCGTTGCTTTGACTGTACAC 58.879 45.455 0.00 0.00 0.00 2.90
2639 6006 2.863740 TCGTTGCTTTGACTGTACACTG 59.136 45.455 0.00 0.00 0.00 3.66
2648 6020 6.202954 GCTTTGACTGTACACTGTATGTTCTT 59.797 38.462 0.00 0.00 43.19 2.52
2769 6143 9.295214 CTGCCTCTAATTATTATAGTGACATCG 57.705 37.037 0.00 0.00 0.00 3.84
2821 6195 8.845413 AGAACCTGCTCTAATCATCATATTTC 57.155 34.615 0.00 0.00 0.00 2.17
2896 6275 4.747540 TTGCTACATTAGTGTGTTGCTG 57.252 40.909 12.92 0.00 46.31 4.41
2955 6334 0.674895 AGGCAAGATGAACACCGAGC 60.675 55.000 0.00 0.00 0.00 5.03
2976 6355 4.122046 GCAAAACAAGACTTTGGCAGATT 58.878 39.130 0.00 0.00 38.66 2.40
3073 6454 5.415389 TGTTAGCTCATGCATGCTTCTTTAA 59.585 36.000 22.25 10.77 42.74 1.52
3078 6459 6.489022 AGCTCATGCATGCTTCTTTAATGATA 59.511 34.615 22.25 0.00 42.74 2.15
3145 6526 8.816894 TCCTGATACAAGTTCTCTTACTCAATT 58.183 33.333 0.00 0.00 32.07 2.32
3344 6725 8.554835 TGAACTTTGTATTCCGTTCATATTCA 57.445 30.769 0.00 0.00 40.33 2.57
3377 6758 0.175302 TGCCACACAGCCAAAAGTTG 59.825 50.000 0.00 0.00 0.00 3.16
3381 6762 1.132262 CACACAGCCAAAAGTTGTCGT 59.868 47.619 0.00 0.00 37.92 4.34
3390 6771 3.365465 CCAAAAGTTGTCGTGTGTGTCAA 60.365 43.478 0.00 0.00 0.00 3.18
3432 6813 4.992319 CCGTTCAGGTGTATTAGTGTTTCA 59.008 41.667 0.00 0.00 34.51 2.69
3520 6901 6.426587 AGGACATTTAGCCTTGTCATTATGT 58.573 36.000 5.53 0.00 43.20 2.29
3529 6910 3.056891 CCTTGTCATTATGTTGGCCGTTT 60.057 43.478 0.00 0.00 0.00 3.60
3591 6973 4.759183 ACCTGAAACTGAAGCTTGATCTTC 59.241 41.667 2.10 1.81 42.04 2.87
3627 7010 5.277345 CCACGGTCTAATTTTATGCTACAGC 60.277 44.000 0.00 0.00 42.50 4.40
3814 7202 6.681777 ACTCAAATGTGCCTAATGTTTCTTC 58.318 36.000 0.00 0.00 0.00 2.87
3866 7254 8.774890 ACAGATGCTGCTCTATAATCAATTAG 57.225 34.615 0.00 0.00 34.37 1.73
3909 7301 5.048434 GGTAATCAATTAGGAAGCTGATGGC 60.048 44.000 0.00 0.00 42.19 4.40
3920 7312 0.179084 GCTGATGGCGGTAGCTTACA 60.179 55.000 0.00 0.00 44.37 2.41
3998 7588 6.938030 TGATCAACTTACTGTATCCCGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.841663 GCTGTCGTGACGCCAATGTT 61.842 55.000 0.00 0.00 0.00 2.71
120 121 2.317609 GCTGTCGTGACGCCAATGT 61.318 57.895 0.00 0.00 0.00 2.71
126 488 0.722469 CATTGTTGCTGTCGTGACGC 60.722 55.000 0.00 9.00 0.00 5.19
127 489 0.110688 CCATTGTTGCTGTCGTGACG 60.111 55.000 0.00 0.00 0.00 4.35
134 496 0.241749 CGTGCATCCATTGTTGCTGT 59.758 50.000 9.41 0.00 37.92 4.40
137 499 0.240678 TGTCGTGCATCCATTGTTGC 59.759 50.000 0.00 2.73 37.64 4.17
141 503 2.995466 ACTTTGTCGTGCATCCATTG 57.005 45.000 0.00 0.00 0.00 2.82
152 514 2.719046 CGCCAAGCTAAAAACTTTGTCG 59.281 45.455 0.00 0.00 0.00 4.35
157 519 2.817844 CCTACCGCCAAGCTAAAAACTT 59.182 45.455 0.00 0.00 0.00 2.66
176 538 0.123266 TCCCAATTTCTCCCTCCCCT 59.877 55.000 0.00 0.00 0.00 4.79
180 542 1.202818 CGGGATCCCAATTTCTCCCTC 60.203 57.143 30.42 0.00 44.42 4.30
182 544 0.843984 TCGGGATCCCAATTTCTCCC 59.156 55.000 30.42 0.46 43.37 4.30
190 552 2.978946 GCCTTGGTCGGGATCCCAA 61.979 63.158 30.42 10.17 38.38 4.12
194 556 1.452108 CAAGGCCTTGGTCGGGATC 60.452 63.158 34.08 0.00 36.95 3.36
195 557 2.677228 CAAGGCCTTGGTCGGGAT 59.323 61.111 34.08 0.00 36.95 3.85
210 572 3.491964 CGATGGTTTCTACGATAGGCCAA 60.492 47.826 5.01 0.00 43.77 4.52
214 576 6.479001 ACAAAATCGATGGTTTCTACGATAGG 59.521 38.462 0.00 0.00 43.08 2.57
218 580 6.548441 AAACAAAATCGATGGTTTCTACGA 57.452 33.333 14.00 0.00 39.01 3.43
229 591 2.351350 GGTGGCACGAAACAAAATCGAT 60.351 45.455 12.17 0.00 42.76 3.59
230 592 1.002251 GGTGGCACGAAACAAAATCGA 60.002 47.619 12.17 0.00 42.76 3.59
233 595 1.115467 TGGGTGGCACGAAACAAAAT 58.885 45.000 12.17 0.00 0.00 1.82
235 597 0.387202 CATGGGTGGCACGAAACAAA 59.613 50.000 12.17 0.00 0.00 2.83
242 605 2.560861 CGTTTCATGGGTGGCACG 59.439 61.111 12.17 0.00 0.00 5.34
249 612 0.251916 TGCTAGGACCGTTTCATGGG 59.748 55.000 0.00 0.00 0.00 4.00
275 639 2.139323 ACATGACTAGAGCGGGTACA 57.861 50.000 0.00 0.00 0.00 2.90
284 648 5.897377 TTCGAGACATGAACATGACTAGA 57.103 39.130 19.56 19.09 42.22 2.43
302 666 9.603921 ATGATATGCACATTCATGTATATTCGA 57.396 29.630 6.97 0.00 37.81 3.71
330 694 9.503399 GACACTCTTTCCCTTTCTTCTTTAATA 57.497 33.333 0.00 0.00 0.00 0.98
331 695 8.221251 AGACACTCTTTCCCTTTCTTCTTTAAT 58.779 33.333 0.00 0.00 0.00 1.40
332 696 7.574607 AGACACTCTTTCCCTTTCTTCTTTAA 58.425 34.615 0.00 0.00 0.00 1.52
333 697 7.138054 AGACACTCTTTCCCTTTCTTCTTTA 57.862 36.000 0.00 0.00 0.00 1.85
334 698 6.007485 AGACACTCTTTCCCTTTCTTCTTT 57.993 37.500 0.00 0.00 0.00 2.52
335 699 5.638530 AGACACTCTTTCCCTTTCTTCTT 57.361 39.130 0.00 0.00 0.00 2.52
336 700 5.131142 TGAAGACACTCTTTCCCTTTCTTCT 59.869 40.000 9.23 0.00 36.73 2.85
337 701 5.237561 GTGAAGACACTCTTTCCCTTTCTTC 59.762 44.000 0.00 0.00 42.99 2.87
338 702 5.126779 GTGAAGACACTCTTTCCCTTTCTT 58.873 41.667 0.00 0.00 42.99 2.52
339 703 4.445019 GGTGAAGACACTCTTTCCCTTTCT 60.445 45.833 0.00 0.00 45.32 2.52
340 704 3.815962 GGTGAAGACACTCTTTCCCTTTC 59.184 47.826 0.00 0.00 45.32 2.62
341 705 3.202151 TGGTGAAGACACTCTTTCCCTTT 59.798 43.478 0.00 0.00 45.32 3.11
342 706 2.777692 TGGTGAAGACACTCTTTCCCTT 59.222 45.455 0.00 0.00 45.32 3.95
343 707 2.370189 CTGGTGAAGACACTCTTTCCCT 59.630 50.000 0.00 0.00 45.32 4.20
344 708 2.104963 ACTGGTGAAGACACTCTTTCCC 59.895 50.000 0.00 0.00 45.32 3.97
345 709 3.394719 GACTGGTGAAGACACTCTTTCC 58.605 50.000 0.00 0.00 45.32 3.13
346 710 3.053455 CGACTGGTGAAGACACTCTTTC 58.947 50.000 0.00 0.00 45.32 2.62
347 711 2.431057 ACGACTGGTGAAGACACTCTTT 59.569 45.455 0.00 0.00 45.32 2.52
348 712 2.032620 ACGACTGGTGAAGACACTCTT 58.967 47.619 0.00 0.00 45.32 2.85
349 713 1.693627 ACGACTGGTGAAGACACTCT 58.306 50.000 0.00 0.00 45.32 3.24
356 720 8.678207 CATTGACATGAACACGACTGGTGAAG 62.678 46.154 0.00 0.00 39.85 3.02
357 721 6.983971 CATTGACATGAACACGACTGGTGAA 61.984 44.000 0.00 0.00 39.85 3.18
358 722 5.563242 CATTGACATGAACACGACTGGTGA 61.563 45.833 0.00 0.00 39.85 4.02
359 723 3.364267 CATTGACATGAACACGACTGGTG 60.364 47.826 0.00 0.00 41.77 4.17
360 724 2.613026 TTGACATGAACACGACTGGT 57.387 45.000 0.00 0.00 0.00 4.00
361 725 2.807967 ACATTGACATGAACACGACTGG 59.192 45.455 0.00 0.00 34.11 4.00
362 726 3.802423 CACATTGACATGAACACGACTG 58.198 45.455 0.00 0.00 34.11 3.51
363 727 2.224079 GCACATTGACATGAACACGACT 59.776 45.455 0.00 0.00 34.11 4.18
364 728 2.224079 AGCACATTGACATGAACACGAC 59.776 45.455 0.00 0.00 34.11 4.34
365 729 2.480037 GAGCACATTGACATGAACACGA 59.520 45.455 0.00 0.00 34.11 4.35
366 730 2.722706 CGAGCACATTGACATGAACACG 60.723 50.000 0.00 0.00 34.11 4.49
367 731 2.413239 CCGAGCACATTGACATGAACAC 60.413 50.000 0.00 0.00 34.11 3.32
368 732 1.805943 CCGAGCACATTGACATGAACA 59.194 47.619 0.00 0.00 34.11 3.18
369 733 1.131126 CCCGAGCACATTGACATGAAC 59.869 52.381 0.00 0.00 34.11 3.18
370 734 1.003003 TCCCGAGCACATTGACATGAA 59.997 47.619 0.00 0.00 34.11 2.57
371 735 0.612744 TCCCGAGCACATTGACATGA 59.387 50.000 0.00 0.00 34.11 3.07
372 736 1.131126 GTTCCCGAGCACATTGACATG 59.869 52.381 0.00 0.00 36.34 3.21
373 737 1.271325 TGTTCCCGAGCACATTGACAT 60.271 47.619 0.00 0.00 0.00 3.06
374 738 0.107643 TGTTCCCGAGCACATTGACA 59.892 50.000 0.00 0.00 0.00 3.58
375 739 1.234821 TTGTTCCCGAGCACATTGAC 58.765 50.000 0.00 0.00 0.00 3.18
376 740 1.606668 GTTTGTTCCCGAGCACATTGA 59.393 47.619 0.00 0.00 0.00 2.57
377 741 1.335872 GGTTTGTTCCCGAGCACATTG 60.336 52.381 0.00 0.00 0.00 2.82
408 772 1.219213 TCTTTGGGGGAGGCTTTCAAA 59.781 47.619 0.00 0.00 0.00 2.69
421 785 3.512724 ACAATCTTTCATGCCTCTTTGGG 59.487 43.478 0.00 0.00 36.00 4.12
422 786 4.796038 ACAATCTTTCATGCCTCTTTGG 57.204 40.909 0.00 0.00 39.35 3.28
435 799 6.431234 GTCATCAGGGTAGTTCAACAATCTTT 59.569 38.462 0.00 0.00 0.00 2.52
443 807 4.506625 CCTTTGGTCATCAGGGTAGTTCAA 60.507 45.833 0.00 0.00 0.00 2.69
453 817 6.600822 AGATTGAATACACCTTTGGTCATCAG 59.399 38.462 0.00 0.00 31.02 2.90
459 823 9.533831 AAATAGAAGATTGAATACACCTTTGGT 57.466 29.630 0.00 0.00 35.62 3.67
491 859 4.081697 CGCCCTTGGATTGGTCTTATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
492 860 3.447229 CGCCCTTGGATTGGTCTTATTTT 59.553 43.478 0.00 0.00 0.00 1.82
493 861 3.023832 CGCCCTTGGATTGGTCTTATTT 58.976 45.455 0.00 0.00 0.00 1.40
494 862 2.241176 TCGCCCTTGGATTGGTCTTATT 59.759 45.455 0.00 0.00 0.00 1.40
495 863 1.843851 TCGCCCTTGGATTGGTCTTAT 59.156 47.619 0.00 0.00 0.00 1.73
496 864 1.281419 TCGCCCTTGGATTGGTCTTA 58.719 50.000 0.00 0.00 0.00 2.10
497 865 0.404040 TTCGCCCTTGGATTGGTCTT 59.596 50.000 0.00 0.00 0.00 3.01
498 866 0.322546 GTTCGCCCTTGGATTGGTCT 60.323 55.000 0.00 0.00 0.00 3.85
499 867 1.313091 GGTTCGCCCTTGGATTGGTC 61.313 60.000 0.00 0.00 0.00 4.02
500 868 1.304134 GGTTCGCCCTTGGATTGGT 60.304 57.895 0.00 0.00 0.00 3.67
501 869 0.254747 TAGGTTCGCCCTTGGATTGG 59.745 55.000 0.00 0.00 42.73 3.16
502 870 1.065418 ACTAGGTTCGCCCTTGGATTG 60.065 52.381 0.00 0.00 42.73 2.67
503 871 1.286248 ACTAGGTTCGCCCTTGGATT 58.714 50.000 0.00 0.00 42.73 3.01
504 872 1.065418 CAACTAGGTTCGCCCTTGGAT 60.065 52.381 0.00 0.00 42.73 3.41
505 873 0.323629 CAACTAGGTTCGCCCTTGGA 59.676 55.000 0.00 0.00 42.73 3.53
506 874 0.676782 CCAACTAGGTTCGCCCTTGG 60.677 60.000 0.00 0.00 42.73 3.61
507 875 1.305930 GCCAACTAGGTTCGCCCTTG 61.306 60.000 0.00 0.41 42.73 3.61
508 876 1.002502 GCCAACTAGGTTCGCCCTT 60.003 57.895 0.00 0.00 42.73 3.95
510 878 0.679960 AATGCCAACTAGGTTCGCCC 60.680 55.000 0.00 0.00 40.61 6.13
511 879 1.173913 AAATGCCAACTAGGTTCGCC 58.826 50.000 0.00 0.00 40.61 5.54
512 880 3.297830 AAAAATGCCAACTAGGTTCGC 57.702 42.857 0.00 0.00 40.61 4.70
530 898 3.185797 GCTCGCGGAGTTTCTTCTAAAAA 59.814 43.478 6.13 0.00 31.39 1.94
531 899 2.735134 GCTCGCGGAGTTTCTTCTAAAA 59.265 45.455 6.13 0.00 31.39 1.52
532 900 2.288579 TGCTCGCGGAGTTTCTTCTAAA 60.289 45.455 6.13 0.00 31.39 1.85
533 901 1.271379 TGCTCGCGGAGTTTCTTCTAA 59.729 47.619 6.13 0.00 31.39 2.10
534 902 0.885879 TGCTCGCGGAGTTTCTTCTA 59.114 50.000 6.13 0.00 31.39 2.10
535 903 0.247736 ATGCTCGCGGAGTTTCTTCT 59.752 50.000 6.13 0.00 31.39 2.85
536 904 0.647925 GATGCTCGCGGAGTTTCTTC 59.352 55.000 6.13 0.00 31.39 2.87
537 905 0.037326 TGATGCTCGCGGAGTTTCTT 60.037 50.000 6.13 0.00 31.39 2.52
538 906 0.737715 GTGATGCTCGCGGAGTTTCT 60.738 55.000 6.13 0.00 31.39 2.52
539 907 1.710339 GTGATGCTCGCGGAGTTTC 59.290 57.895 6.13 4.88 31.39 2.78
540 908 2.094659 CGTGATGCTCGCGGAGTTT 61.095 57.895 6.13 0.00 45.61 2.66
541 909 2.507102 CGTGATGCTCGCGGAGTT 60.507 61.111 6.13 0.00 45.61 3.01
548 916 0.095245 ATTTGAACGCGTGATGCTCG 59.905 50.000 14.98 0.00 43.27 5.03
549 917 1.128507 TGATTTGAACGCGTGATGCTC 59.871 47.619 14.98 6.74 43.27 4.26
550 918 1.129251 CTGATTTGAACGCGTGATGCT 59.871 47.619 14.98 0.00 43.27 3.79
551 919 1.527696 CTGATTTGAACGCGTGATGC 58.472 50.000 14.98 3.32 41.47 3.91
552 920 1.731709 TCCTGATTTGAACGCGTGATG 59.268 47.619 14.98 0.00 0.00 3.07
553 921 1.732259 GTCCTGATTTGAACGCGTGAT 59.268 47.619 14.98 4.79 0.00 3.06
554 922 1.144969 GTCCTGATTTGAACGCGTGA 58.855 50.000 14.98 0.00 0.00 4.35
555 923 0.165944 GGTCCTGATTTGAACGCGTG 59.834 55.000 14.98 0.00 0.00 5.34
556 924 0.034896 AGGTCCTGATTTGAACGCGT 59.965 50.000 5.58 5.58 0.00 6.01
557 925 2.004583 TAGGTCCTGATTTGAACGCG 57.995 50.000 3.53 3.53 0.00 6.01
558 926 4.759516 TTTTAGGTCCTGATTTGAACGC 57.240 40.909 0.00 0.00 0.00 4.84
559 927 5.447279 CCGATTTTAGGTCCTGATTTGAACG 60.447 44.000 0.00 0.00 0.00 3.95
560 928 5.646360 TCCGATTTTAGGTCCTGATTTGAAC 59.354 40.000 0.00 0.00 0.00 3.18
561 929 5.811190 TCCGATTTTAGGTCCTGATTTGAA 58.189 37.500 0.00 0.00 0.00 2.69
562 930 5.429681 TCCGATTTTAGGTCCTGATTTGA 57.570 39.130 0.00 0.00 0.00 2.69
563 931 5.009010 CCATCCGATTTTAGGTCCTGATTTG 59.991 44.000 0.00 0.00 0.00 2.32
564 932 5.133221 CCATCCGATTTTAGGTCCTGATTT 58.867 41.667 0.00 0.00 0.00 2.17
565 933 4.446311 CCCATCCGATTTTAGGTCCTGATT 60.446 45.833 0.00 0.00 0.00 2.57
566 934 3.073062 CCCATCCGATTTTAGGTCCTGAT 59.927 47.826 0.00 0.00 0.00 2.90
567 935 2.438021 CCCATCCGATTTTAGGTCCTGA 59.562 50.000 0.00 0.00 0.00 3.86
568 936 2.851195 CCCATCCGATTTTAGGTCCTG 58.149 52.381 0.00 0.00 0.00 3.86
569 937 1.143073 GCCCATCCGATTTTAGGTCCT 59.857 52.381 0.00 0.00 0.00 3.85
570 938 1.143073 AGCCCATCCGATTTTAGGTCC 59.857 52.381 0.00 0.00 0.00 4.46
571 939 2.222027 CAGCCCATCCGATTTTAGGTC 58.778 52.381 0.00 0.00 0.00 3.85
572 940 1.133792 CCAGCCCATCCGATTTTAGGT 60.134 52.381 0.00 0.00 0.00 3.08
573 941 1.609208 CCAGCCCATCCGATTTTAGG 58.391 55.000 0.00 0.00 0.00 2.69
574 942 0.954452 GCCAGCCCATCCGATTTTAG 59.046 55.000 0.00 0.00 0.00 1.85
575 943 0.257328 TGCCAGCCCATCCGATTTTA 59.743 50.000 0.00 0.00 0.00 1.52
576 944 1.000233 TGCCAGCCCATCCGATTTT 60.000 52.632 0.00 0.00 0.00 1.82
577 945 1.454479 CTGCCAGCCCATCCGATTT 60.454 57.895 0.00 0.00 0.00 2.17
578 946 2.194056 CTGCCAGCCCATCCGATT 59.806 61.111 0.00 0.00 0.00 3.34
579 947 4.575973 GCTGCCAGCCCATCCGAT 62.576 66.667 5.06 0.00 34.48 4.18
582 950 3.455469 GTTGCTGCCAGCCCATCC 61.455 66.667 15.29 0.00 41.51 3.51
583 951 2.677524 TGTTGCTGCCAGCCCATC 60.678 61.111 15.29 2.57 41.51 3.51
584 952 2.678934 CTGTTGCTGCCAGCCCAT 60.679 61.111 15.29 0.00 41.51 4.00
585 953 4.980702 CCTGTTGCTGCCAGCCCA 62.981 66.667 15.29 10.00 41.51 5.36
586 954 4.982701 ACCTGTTGCTGCCAGCCC 62.983 66.667 15.29 5.33 41.51 5.19
587 955 3.368571 GACCTGTTGCTGCCAGCC 61.369 66.667 15.29 0.00 41.51 4.85
588 956 3.730761 CGACCTGTTGCTGCCAGC 61.731 66.667 10.45 10.45 42.82 4.85
589 957 2.031012 TCGACCTGTTGCTGCCAG 59.969 61.111 0.00 0.00 0.00 4.85
590 958 2.280797 GTCGACCTGTTGCTGCCA 60.281 61.111 3.51 0.00 0.00 4.92
591 959 3.414700 CGTCGACCTGTTGCTGCC 61.415 66.667 10.58 0.00 0.00 4.85
592 960 4.077188 GCGTCGACCTGTTGCTGC 62.077 66.667 10.58 0.58 0.00 5.25
593 961 2.356313 AGCGTCGACCTGTTGCTG 60.356 61.111 13.13 0.00 33.99 4.41
594 962 2.049063 GAGCGTCGACCTGTTGCT 60.049 61.111 13.67 13.67 38.89 3.91
595 963 2.049063 AGAGCGTCGACCTGTTGC 60.049 61.111 10.58 7.14 0.00 4.17
596 964 0.318699 TTGAGAGCGTCGACCTGTTG 60.319 55.000 10.58 0.00 0.00 3.33
597 965 0.603569 ATTGAGAGCGTCGACCTGTT 59.396 50.000 10.58 0.00 0.00 3.16
598 966 0.171455 GATTGAGAGCGTCGACCTGT 59.829 55.000 10.58 6.69 0.00 4.00
599 967 0.453793 AGATTGAGAGCGTCGACCTG 59.546 55.000 10.58 0.00 0.00 4.00
600 968 1.133407 GAAGATTGAGAGCGTCGACCT 59.867 52.381 10.58 8.15 0.00 3.85
601 969 1.551145 GAAGATTGAGAGCGTCGACC 58.449 55.000 10.58 2.76 0.00 4.79
602 970 1.135373 TGGAAGATTGAGAGCGTCGAC 60.135 52.381 5.18 5.18 0.00 4.20
603 971 1.173913 TGGAAGATTGAGAGCGTCGA 58.826 50.000 0.00 0.00 0.00 4.20
604 972 1.996292 TTGGAAGATTGAGAGCGTCG 58.004 50.000 0.00 0.00 0.00 5.12
605 973 4.033817 CAGAATTGGAAGATTGAGAGCGTC 59.966 45.833 0.00 0.00 0.00 5.19
606 974 3.937706 CAGAATTGGAAGATTGAGAGCGT 59.062 43.478 0.00 0.00 0.00 5.07
607 975 4.186926 TCAGAATTGGAAGATTGAGAGCG 58.813 43.478 0.00 0.00 0.00 5.03
608 976 6.506500 TTTCAGAATTGGAAGATTGAGAGC 57.493 37.500 0.00 0.00 0.00 4.09
609 977 8.332996 TCTTTTCAGAATTGGAAGATTGAGAG 57.667 34.615 0.00 0.00 0.00 3.20
610 978 8.696043 TTCTTTTCAGAATTGGAAGATTGAGA 57.304 30.769 0.00 0.00 33.80 3.27
611 979 8.790718 TCTTCTTTTCAGAATTGGAAGATTGAG 58.209 33.333 14.06 3.92 38.42 3.02
612 980 8.696043 TCTTCTTTTCAGAATTGGAAGATTGA 57.304 30.769 14.06 6.64 38.42 2.57
613 981 9.189723 GTTCTTCTTTTCAGAATTGGAAGATTG 57.810 33.333 16.72 6.64 38.42 2.67
614 982 9.140874 AGTTCTTCTTTTCAGAATTGGAAGATT 57.859 29.630 16.72 10.13 38.42 2.40
615 983 8.574737 CAGTTCTTCTTTTCAGAATTGGAAGAT 58.425 33.333 16.72 6.96 38.42 2.40
616 984 7.557719 ACAGTTCTTCTTTTCAGAATTGGAAGA 59.442 33.333 14.06 14.06 40.53 2.87
617 985 7.646922 CACAGTTCTTCTTTTCAGAATTGGAAG 59.353 37.037 9.23 11.18 40.53 3.46
618 986 7.122650 ACACAGTTCTTCTTTTCAGAATTGGAA 59.877 33.333 9.23 0.00 40.53 3.53
619 987 6.603201 ACACAGTTCTTCTTTTCAGAATTGGA 59.397 34.615 9.23 0.00 40.53 3.53
620 988 6.799512 ACACAGTTCTTCTTTTCAGAATTGG 58.200 36.000 9.23 2.78 40.53 3.16
621 989 7.701445 AGACACAGTTCTTCTTTTCAGAATTG 58.299 34.615 4.22 4.22 41.46 2.32
622 990 7.872113 AGACACAGTTCTTCTTTTCAGAATT 57.128 32.000 0.00 0.00 38.42 2.17
623 991 7.872113 AAGACACAGTTCTTCTTTTCAGAAT 57.128 32.000 0.00 0.00 38.42 2.40
624 992 7.687941 AAAGACACAGTTCTTCTTTTCAGAA 57.312 32.000 0.00 0.00 36.40 3.02
625 993 7.687941 AAAAGACACAGTTCTTCTTTTCAGA 57.312 32.000 7.90 0.00 43.05 3.27
657 1025 9.645059 TGAATAGACACATTTGTTTGTTTTTCA 57.355 25.926 0.00 0.00 35.47 2.69
658 1026 9.900264 GTGAATAGACACATTTGTTTGTTTTTC 57.100 29.630 0.00 0.00 40.11 2.29
659 1027 8.878769 GGTGAATAGACACATTTGTTTGTTTTT 58.121 29.630 0.00 0.00 41.88 1.94
660 1028 7.221838 CGGTGAATAGACACATTTGTTTGTTTT 59.778 33.333 0.00 0.00 41.88 2.43
661 1029 6.695278 CGGTGAATAGACACATTTGTTTGTTT 59.305 34.615 0.00 0.00 41.88 2.83
662 1030 6.205784 CGGTGAATAGACACATTTGTTTGTT 58.794 36.000 0.00 0.00 41.88 2.83
663 1031 5.278266 CCGGTGAATAGACACATTTGTTTGT 60.278 40.000 0.00 0.00 41.88 2.83
664 1032 5.049060 TCCGGTGAATAGACACATTTGTTTG 60.049 40.000 0.00 0.00 41.88 2.93
665 1033 5.067273 TCCGGTGAATAGACACATTTGTTT 58.933 37.500 0.00 0.00 41.88 2.83
666 1034 4.647611 TCCGGTGAATAGACACATTTGTT 58.352 39.130 0.00 0.00 41.88 2.83
667 1035 4.020573 TCTCCGGTGAATAGACACATTTGT 60.021 41.667 3.14 0.00 41.88 2.83
668 1036 4.503910 TCTCCGGTGAATAGACACATTTG 58.496 43.478 3.14 0.00 41.88 2.32
669 1037 4.759782 CTCTCCGGTGAATAGACACATTT 58.240 43.478 7.75 0.00 41.88 2.32
670 1038 3.430929 GCTCTCCGGTGAATAGACACATT 60.431 47.826 7.75 0.00 41.88 2.71
671 1039 2.101582 GCTCTCCGGTGAATAGACACAT 59.898 50.000 7.75 0.00 41.88 3.21
672 1040 1.476891 GCTCTCCGGTGAATAGACACA 59.523 52.381 7.75 0.00 41.88 3.72
673 1041 1.751924 AGCTCTCCGGTGAATAGACAC 59.248 52.381 7.75 0.00 39.70 3.67
674 1042 2.025155 GAGCTCTCCGGTGAATAGACA 58.975 52.381 6.43 0.00 0.00 3.41
675 1043 1.338655 GGAGCTCTCCGGTGAATAGAC 59.661 57.143 14.64 0.00 40.36 2.59
676 1044 1.693627 GGAGCTCTCCGGTGAATAGA 58.306 55.000 14.64 0.00 40.36 1.98
686 1054 3.991242 GGTTATTCCGGAGCTCTCC 57.009 57.895 14.64 5.85 46.18 3.71
705 1073 4.675510 TGTCTATCCGAACGTTATGGAAC 58.324 43.478 21.57 16.48 34.97 3.62
706 1074 4.987408 TGTCTATCCGAACGTTATGGAA 57.013 40.909 21.57 12.24 34.97 3.53
707 1075 4.202080 CCTTGTCTATCCGAACGTTATGGA 60.202 45.833 20.40 20.40 35.96 3.41
708 1076 4.049186 CCTTGTCTATCCGAACGTTATGG 58.951 47.826 11.83 11.83 0.00 2.74
709 1077 3.489785 GCCTTGTCTATCCGAACGTTATG 59.510 47.826 0.00 0.00 0.00 1.90
710 1078 3.714391 GCCTTGTCTATCCGAACGTTAT 58.286 45.455 0.00 0.00 0.00 1.89
711 1079 2.478370 CGCCTTGTCTATCCGAACGTTA 60.478 50.000 0.00 0.00 0.00 3.18
712 1080 1.734707 CGCCTTGTCTATCCGAACGTT 60.735 52.381 0.00 0.00 0.00 3.99
713 1081 0.179145 CGCCTTGTCTATCCGAACGT 60.179 55.000 0.00 0.00 0.00 3.99
714 1082 0.179145 ACGCCTTGTCTATCCGAACG 60.179 55.000 0.00 0.00 0.00 3.95
715 1083 1.278238 CACGCCTTGTCTATCCGAAC 58.722 55.000 0.00 0.00 0.00 3.95
716 1084 0.459585 GCACGCCTTGTCTATCCGAA 60.460 55.000 0.00 0.00 0.00 4.30
717 1085 1.141019 GCACGCCTTGTCTATCCGA 59.859 57.895 0.00 0.00 0.00 4.55
718 1086 1.141881 AGCACGCCTTGTCTATCCG 59.858 57.895 0.00 0.00 0.00 4.18
719 1087 1.432270 GCAGCACGCCTTGTCTATCC 61.432 60.000 0.00 0.00 32.94 2.59
720 1088 0.460987 AGCAGCACGCCTTGTCTATC 60.461 55.000 0.00 0.00 44.04 2.08
721 1089 0.460987 GAGCAGCACGCCTTGTCTAT 60.461 55.000 0.00 0.00 44.04 1.98
722 1090 1.079819 GAGCAGCACGCCTTGTCTA 60.080 57.895 0.00 0.00 44.04 2.59
723 1091 2.358003 GAGCAGCACGCCTTGTCT 60.358 61.111 0.00 0.00 44.04 3.41
724 1092 2.666190 TGAGCAGCACGCCTTGTC 60.666 61.111 0.00 0.00 44.04 3.18
725 1093 2.667536 CTGAGCAGCACGCCTTGT 60.668 61.111 0.00 0.00 44.04 3.16
726 1094 2.180131 GAACTGAGCAGCACGCCTTG 62.180 60.000 0.00 0.00 44.04 3.61
727 1095 1.963338 GAACTGAGCAGCACGCCTT 60.963 57.895 0.00 0.00 44.04 4.35
728 1096 2.358003 GAACTGAGCAGCACGCCT 60.358 61.111 0.00 0.00 44.04 5.52
729 1097 3.782244 CGAACTGAGCAGCACGCC 61.782 66.667 0.00 0.00 44.04 5.68
730 1098 2.734723 TCGAACTGAGCAGCACGC 60.735 61.111 0.00 0.00 42.91 5.34
731 1099 2.375766 GGTCGAACTGAGCAGCACG 61.376 63.158 0.00 9.47 44.60 5.34
732 1100 3.555428 GGTCGAACTGAGCAGCAC 58.445 61.111 0.00 0.00 44.60 4.40
737 1105 2.432628 CGGTGGGTCGAACTGAGC 60.433 66.667 0.00 0.00 44.49 4.26
738 1106 1.080705 GTCGGTGGGTCGAACTGAG 60.081 63.158 0.00 0.00 41.05 3.35
739 1107 1.802337 CTGTCGGTGGGTCGAACTGA 61.802 60.000 0.00 0.00 41.05 3.41
765 1133 0.107643 TTCCATGTGCGTTGAGTGGA 59.892 50.000 0.00 0.00 37.20 4.02
770 1138 0.313672 GGCTTTTCCATGTGCGTTGA 59.686 50.000 0.00 0.00 34.01 3.18
772 1140 1.904287 TAGGCTTTTCCATGTGCGTT 58.096 45.000 0.00 0.00 37.29 4.84
774 1142 2.016318 TCATAGGCTTTTCCATGTGCG 58.984 47.619 0.00 0.00 37.29 5.34
787 1155 3.588955 CCACAAAGGCTTTTTCATAGGC 58.411 45.455 10.36 0.00 38.38 3.93
832 1200 1.534697 GGGGAGTGGTTGGTTCACA 59.465 57.895 0.00 0.00 37.58 3.58
851 1219 2.102084 TGAATCGGAGAAGCAGAGGATG 59.898 50.000 0.00 0.00 43.58 3.51
868 1236 3.500471 GGGAGAGGGTTTTGGAAGTGAAT 60.500 47.826 0.00 0.00 0.00 2.57
872 1240 1.834540 AGGGAGAGGGTTTTGGAAGT 58.165 50.000 0.00 0.00 0.00 3.01
891 1259 1.377229 CTGGTAGGGGTGGCGAAAA 59.623 57.895 0.00 0.00 0.00 2.29
1227 1632 0.944386 ACACGTTGATGAGGTTGTGC 59.056 50.000 0.00 0.00 0.00 4.57
1291 1696 1.299976 GGTTCCTGAAGGTGCCGAT 59.700 57.895 0.00 0.00 36.34 4.18
1579 1984 3.292159 GAAACGCCGCCCCTTGTT 61.292 61.111 0.00 0.00 0.00 2.83
1804 2217 2.009774 CTGTTGGTCGGGAATCATGAC 58.990 52.381 0.00 0.00 0.00 3.06
1810 2223 2.355115 GCCCTGTTGGTCGGGAAT 59.645 61.111 0.00 0.00 45.09 3.01
2091 2546 1.279840 GTCCACGCTTGCACAGAAC 59.720 57.895 0.00 0.00 0.00 3.01
2269 2731 8.201554 TCAAACACTTAGATAGACATGATTGC 57.798 34.615 0.00 0.00 0.00 3.56
2301 5642 2.493278 CCCACTCCATTGCAACTAAAGG 59.507 50.000 0.00 0.00 0.00 3.11
2350 5706 7.233553 TGGGATGATATCTTAGTGACCAGTAAG 59.766 40.741 15.15 15.15 42.74 2.34
2351 5707 7.073208 TGGGATGATATCTTAGTGACCAGTAA 58.927 38.462 3.98 0.00 0.00 2.24
2352 5708 6.620429 TGGGATGATATCTTAGTGACCAGTA 58.380 40.000 3.98 0.00 0.00 2.74
2353 5709 5.467738 TGGGATGATATCTTAGTGACCAGT 58.532 41.667 3.98 0.00 0.00 4.00
2354 5710 6.617782 ATGGGATGATATCTTAGTGACCAG 57.382 41.667 3.98 0.00 0.00 4.00
2355 5711 7.310671 GCTTATGGGATGATATCTTAGTGACCA 60.311 40.741 3.98 3.75 0.00 4.02
2356 5712 7.044798 GCTTATGGGATGATATCTTAGTGACC 58.955 42.308 3.98 0.00 0.00 4.02
2357 5713 7.763528 CAGCTTATGGGATGATATCTTAGTGAC 59.236 40.741 3.98 0.00 0.00 3.67
2358 5714 7.455953 ACAGCTTATGGGATGATATCTTAGTGA 59.544 37.037 3.98 0.00 0.00 3.41
2359 5715 7.619050 ACAGCTTATGGGATGATATCTTAGTG 58.381 38.462 3.98 0.00 0.00 2.74
2360 5716 7.805083 ACAGCTTATGGGATGATATCTTAGT 57.195 36.000 3.98 0.00 0.00 2.24
2373 5729 7.830697 TGGATATGATTGATTACAGCTTATGGG 59.169 37.037 0.00 0.00 0.00 4.00
2426 5783 4.591072 TGAACCCAAGAAAATAAACAGGGG 59.409 41.667 0.00 0.00 39.15 4.79
2516 5874 6.077322 TCAAATCAAAGAAAGGTCCCATTCT 58.923 36.000 0.00 0.00 35.80 2.40
2572 5932 5.830457 TCAAAATCACTACACCACCATGAAA 59.170 36.000 0.00 0.00 0.00 2.69
2588 5948 9.364989 CCTTGTAAAAGTTTCTGTTCAAAATCA 57.635 29.630 0.00 0.00 0.00 2.57
2589 5949 9.366216 ACCTTGTAAAAGTTTCTGTTCAAAATC 57.634 29.630 0.00 0.00 0.00 2.17
2590 5950 9.719355 AACCTTGTAAAAGTTTCTGTTCAAAAT 57.281 25.926 0.00 0.00 0.00 1.82
2619 5986 2.607635 ACAGTGTACAGTCAAAGCAACG 59.392 45.455 0.00 0.00 0.00 4.10
2769 6143 2.526304 TCAGCATCGTACCCATAAGC 57.474 50.000 0.00 0.00 0.00 3.09
2821 6195 6.582672 TCGCATACAAGAATTAAGATAGCGAG 59.417 38.462 0.00 0.00 43.42 5.03
2955 6334 6.536224 AGAAAATCTGCCAAAGTCTTGTTTTG 59.464 34.615 0.00 0.00 35.75 2.44
2976 6355 3.067106 GGATGTCTGAGCGAACAAGAAA 58.933 45.455 0.00 0.00 0.00 2.52
3078 6459 9.947433 AATTGTGAATGGATCATACAACAATTT 57.053 25.926 16.18 6.81 40.97 1.82
3145 6526 6.647334 TTTTTCAGTCCATAAACTGCATGA 57.353 33.333 0.00 0.00 45.12 3.07
3272 6653 9.684448 CTATGGAGTGAATATGTGTTACTAGTG 57.316 37.037 5.39 0.00 0.00 2.74
3377 6758 2.607635 AGTTCATGTTGACACACACGAC 59.392 45.455 0.00 0.00 35.03 4.34
3381 6762 4.013050 TGGAAAGTTCATGTTGACACACA 58.987 39.130 0.00 0.00 35.03 3.72
3390 6771 2.356125 CGGAGGGATGGAAAGTTCATGT 60.356 50.000 0.00 0.00 0.00 3.21
3432 6813 4.521146 CATCCTTTGTGCCTGATAGTTCT 58.479 43.478 0.00 0.00 0.00 3.01
3520 6901 1.783071 AAAGGGAAGAAAACGGCCAA 58.217 45.000 2.24 0.00 0.00 4.52
3591 6973 8.980143 AAATTAGACCGTGGTCAATTTTATTG 57.020 30.769 20.51 0.00 46.76 1.90
3814 7202 7.814587 AGTTCTGAGAAACCTGAAAACAAAAAG 59.185 33.333 0.00 0.00 0.00 2.27
3877 7267 6.071051 GCTTCCTAATTGATTACCCCACAAAA 60.071 38.462 0.00 0.00 0.00 2.44
3878 7268 5.420739 GCTTCCTAATTGATTACCCCACAAA 59.579 40.000 0.00 0.00 0.00 2.83
3879 7269 4.953579 GCTTCCTAATTGATTACCCCACAA 59.046 41.667 0.00 0.00 0.00 3.33
3909 7301 4.640789 ATGAGAGTTCTGTAAGCTACCG 57.359 45.455 0.00 0.00 0.00 4.02
3920 7312 4.469469 TTTCCCCCAAAATGAGAGTTCT 57.531 40.909 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.