Multiple sequence alignment - TraesCS1A01G293800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G293800 chr1A 100.000 7847 0 0 1 7847 489169665 489177511 0.000000e+00 14491.0
1 TraesCS1A01G293800 chr1A 100.000 128 0 0 1768 1895 489175859 489175986 3.660000e-58 237.0
2 TraesCS1A01G293800 chr1A 97.778 135 2 1 1768 1902 406182402 406182535 1.700000e-56 231.0
3 TraesCS1A01G293800 chr1A 97.037 135 3 1 1768 1902 175801623 175801756 7.920000e-55 226.0
4 TraesCS1A01G293800 chr1A 100.000 110 0 0 125 234 384334446 384334555 3.710000e-48 204.0
5 TraesCS1A01G293800 chr1A 98.198 111 2 0 126 236 362406272 362406382 2.230000e-45 195.0
6 TraesCS1A01G293800 chr1A 87.500 152 14 4 87 235 407995526 407995675 3.770000e-38 171.0
7 TraesCS1A01G293800 chr6B 99.191 4329 34 1 1996 6323 118856250 118851922 0.000000e+00 7799.0
8 TraesCS1A01G293800 chr6B 85.444 1161 128 25 619 1768 120684089 120682959 0.000000e+00 1170.0
9 TraesCS1A01G293800 chr6B 87.733 375 40 4 6322 6691 120682965 120682592 4.350000e-117 433.0
10 TraesCS1A01G293800 chr6B 90.391 281 23 2 7017 7297 120677310 120677034 4.470000e-97 366.0
11 TraesCS1A01G293800 chr6B 97.080 137 3 1 1768 1904 715614947 715615082 6.120000e-56 230.0
12 TraesCS1A01G293800 chr6B 87.766 188 15 5 7433 7613 120677038 120676852 6.170000e-51 213.0
13 TraesCS1A01G293800 chr6B 87.013 154 16 3 87 237 509769807 509769959 3.770000e-38 171.0
14 TraesCS1A01G293800 chr6B 97.500 40 1 0 540 579 120684182 120684143 1.410000e-07 69.4
15 TraesCS1A01G293800 chr4A 99.168 4328 35 1 1996 6323 66759614 66755288 0.000000e+00 7792.0
16 TraesCS1A01G293800 chr4A 99.100 4333 37 2 1996 6327 90072922 90077253 0.000000e+00 7784.0
17 TraesCS1A01G293800 chr4A 99.122 4328 38 0 1996 6323 59881806 59877479 0.000000e+00 7782.0
18 TraesCS1A01G293800 chr4A 99.122 4329 37 1 1996 6323 90880929 90885257 0.000000e+00 7782.0
19 TraesCS1A01G293800 chr2B 99.145 4329 36 1 1996 6323 244493573 244497901 0.000000e+00 7788.0
20 TraesCS1A01G293800 chr2B 97.810 137 2 1 1768 1904 412193756 412193891 1.320000e-57 235.0
21 TraesCS1A01G293800 chr4B 99.122 4329 37 1 1996 6323 510731531 510727203 0.000000e+00 7782.0
22 TraesCS1A01G293800 chr4B 98.473 131 1 1 1769 1899 401877881 401878010 6.120000e-56 230.0
23 TraesCS1A01G293800 chr4B 97.744 133 2 1 1768 1900 364154295 364154164 2.200000e-55 228.0
24 TraesCS1A01G293800 chr4B 87.919 149 17 1 87 235 565697297 565697150 2.910000e-39 174.0
25 TraesCS1A01G293800 chr2A 99.077 4334 37 2 1996 6328 749753465 749757796 0.000000e+00 7779.0
26 TraesCS1A01G293800 chr2A 99.254 134 1 0 1762 1895 749752497 749752630 7.870000e-60 243.0
27 TraesCS1A01G293800 chr2A 97.778 135 3 0 1761 1895 456651276 456651142 4.730000e-57 233.0
28 TraesCS1A01G293800 chr1B 99.054 4334 40 1 1997 6329 500582697 500578364 0.000000e+00 7775.0
29 TraesCS1A01G293800 chr1B 90.760 1342 87 17 445 1768 523229832 523231154 0.000000e+00 1757.0
30 TraesCS1A01G293800 chr1B 88.737 657 66 8 724 1374 523237107 523237761 0.000000e+00 797.0
31 TraesCS1A01G293800 chr1B 96.570 379 13 0 6322 6700 523231148 523231526 5.170000e-176 628.0
32 TraesCS1A01G293800 chr1B 85.780 436 43 6 7191 7608 523231609 523232043 2.010000e-120 444.0
33 TraesCS1A01G293800 chr1B 97.778 135 2 1 1768 1902 500578498 500578365 1.700000e-56 231.0
34 TraesCS1A01G293800 chr1B 96.429 140 3 2 1768 1907 638972888 638972751 6.120000e-56 230.0
35 TraesCS1A01G293800 chr1B 77.384 451 40 32 234 660 523236665 523237077 2.220000e-50 211.0
36 TraesCS1A01G293800 chr1B 73.742 636 121 22 1039 1662 525898761 525899362 2.870000e-49 207.0
37 TraesCS1A01G293800 chr1B 85.027 187 7 5 234 404 523228054 523228235 3.770000e-38 171.0
38 TraesCS1A01G293800 chr1D 86.120 1232 127 15 543 1768 396285961 396284768 0.000000e+00 1288.0
39 TraesCS1A01G293800 chr1D 83.932 1002 117 26 541 1526 396320490 396319517 0.000000e+00 918.0
40 TraesCS1A01G293800 chr1D 84.524 672 57 13 6964 7608 396319421 396318770 8.650000e-174 621.0
41 TraesCS1A01G293800 chr1D 87.733 375 34 7 6322 6685 396284774 396284401 2.020000e-115 427.0
42 TraesCS1A01G293800 chr1D 88.843 242 1 5 7632 7847 396282426 396282185 2.790000e-69 274.0
43 TraesCS1A01G293800 chr1D 84.274 248 10 10 7382 7606 396283863 396283622 1.710000e-51 215.0
44 TraesCS1A01G293800 chr1D 100.000 109 0 0 127 235 459859146 459859038 1.340000e-47 202.0
45 TraesCS1A01G293800 chr1D 94.495 109 6 0 127 235 293876609 293876501 1.350000e-37 169.0
46 TraesCS1A01G293800 chr1D 91.566 83 6 1 1 83 396287041 396286960 6.440000e-21 113.0
47 TraesCS1A01G293800 chr6D 84.970 1171 121 31 619 1768 50732287 50733423 0.000000e+00 1136.0
48 TraesCS1A01G293800 chr6D 86.524 653 65 8 6966 7600 50735911 50736558 0.000000e+00 697.0
49 TraesCS1A01G293800 chr6D 87.701 374 39 6 6323 6691 50733418 50733789 5.630000e-116 429.0
50 TraesCS1A01G293800 chr6D 96.581 117 3 1 122 238 230814469 230814354 8.040000e-45 193.0
51 TraesCS1A01G293800 chr6D 96.330 109 4 0 126 234 356738469 356738361 6.260000e-41 180.0
52 TraesCS1A01G293800 chr6D 93.443 122 3 5 124 243 454821523 454821405 8.090000e-40 176.0
53 TraesCS1A01G293800 chr6D 94.595 37 2 0 7810 7846 50737876 50737912 3.060000e-04 58.4
54 TraesCS1A01G293800 chr6A 83.835 1262 133 45 540 1768 64352133 64350910 0.000000e+00 1134.0
55 TraesCS1A01G293800 chr6A 87.701 374 36 8 6323 6689 64350915 64350545 2.020000e-115 427.0
56 TraesCS1A01G293800 chr6A 95.890 146 4 2 1768 1912 180192815 180192959 1.320000e-57 235.0
57 TraesCS1A01G293800 chr6A 99.225 129 1 0 1767 1895 314060527 314060655 4.730000e-57 233.0
58 TraesCS1A01G293800 chr6A 99.219 128 1 0 1768 1895 4053811 4053684 1.700000e-56 231.0
59 TraesCS1A01G293800 chr6A 99.219 128 1 0 1768 1895 250066681 250066808 1.700000e-56 231.0
60 TraesCS1A01G293800 chr6A 99.219 128 1 0 1768 1895 314065607 314065734 1.700000e-56 231.0
61 TraesCS1A01G293800 chr6A 98.230 113 2 0 127 239 64543175 64543063 1.730000e-46 198.0
62 TraesCS1A01G293800 chr6A 100.000 106 0 0 1896 2001 4053439 4053544 6.210000e-46 196.0
63 TraesCS1A01G293800 chr6A 100.000 106 0 0 1896 2001 10586563 10586458 6.210000e-46 196.0
64 TraesCS1A01G293800 chr6A 100.000 106 0 0 1896 2001 314060901 314060796 6.210000e-46 196.0
65 TraesCS1A01G293800 chr5A 99.242 132 1 0 1764 1895 511022372 511022503 1.020000e-58 239.0
66 TraesCS1A01G293800 chr5A 98.261 115 2 0 121 235 299273014 299272900 1.340000e-47 202.0
67 TraesCS1A01G293800 chr5A 97.414 116 2 1 123 238 9649941 9649827 6.210000e-46 196.0
68 TraesCS1A01G293800 chr5A 88.079 151 15 3 87 235 462932969 462933118 8.090000e-40 176.0
69 TraesCS1A01G293800 chr3B 98.519 135 1 1 1768 1902 540437772 540437639 3.660000e-58 237.0
70 TraesCS1A01G293800 chr5B 98.507 134 1 1 1762 1895 519003953 519003821 1.320000e-57 235.0
71 TraesCS1A01G293800 chr5B 99.231 130 1 0 1768 1897 594122119 594121990 1.320000e-57 235.0
72 TraesCS1A01G293800 chr5B 97.122 139 2 2 1768 1905 336100370 336100233 4.730000e-57 233.0
73 TraesCS1A01G293800 chr5B 99.225 129 1 0 1767 1895 594127498 594127370 4.730000e-57 233.0
74 TraesCS1A01G293800 chr5B 95.862 145 3 2 1768 1910 324971177 324971320 1.700000e-56 231.0
75 TraesCS1A01G293800 chr5B 97.778 135 2 1 1761 1895 598547598 598547465 1.700000e-56 231.0
76 TraesCS1A01G293800 chr5B 97.080 137 4 0 1759 1895 634562758 634562894 1.700000e-56 231.0
77 TraesCS1A01G293800 chr5B 100.000 108 0 0 127 234 622393552 622393445 4.800000e-47 200.0
78 TraesCS1A01G293800 chr5B 88.158 152 13 4 87 235 560171673 560171822 8.090000e-40 176.0
79 TraesCS1A01G293800 chr5B 78.136 279 52 4 6323 6595 48930458 48930183 1.350000e-37 169.0
80 TraesCS1A01G293800 chrUn 99.219 128 1 0 1768 1895 48519975 48519848 1.700000e-56 231.0
81 TraesCS1A01G293800 chrUn 99.219 128 1 0 1768 1895 181001679 181001806 1.700000e-56 231.0
82 TraesCS1A01G293800 chrUn 98.485 132 1 1 1768 1899 322767261 322767131 1.700000e-56 231.0
83 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 180996468 180996594 6.120000e-56 230.0
84 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 181035154 181035280 6.120000e-56 230.0
85 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 300782956 300782830 6.120000e-56 230.0
86 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 370636787 370636913 6.120000e-56 230.0
87 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 399896865 399896991 6.120000e-56 230.0
88 TraesCS1A01G293800 chrUn 99.213 127 1 0 1769 1895 443366235 443366361 6.120000e-56 230.0
89 TraesCS1A01G293800 chrUn 97.744 133 2 1 1768 1900 465029640 465029771 2.200000e-55 228.0
90 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 180996840 180996735 6.210000e-46 196.0
91 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 181035526 181035421 6.210000e-46 196.0
92 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 300782584 300782689 6.210000e-46 196.0
93 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 425364730 425364625 6.210000e-46 196.0
94 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 425366040 425365935 6.210000e-46 196.0
95 TraesCS1A01G293800 chrUn 100.000 106 0 0 1896 2001 450102606 450102711 6.210000e-46 196.0
96 TraesCS1A01G293800 chrUn 100.000 105 0 0 1896 2000 82709152 82709256 2.230000e-45 195.0
97 TraesCS1A01G293800 chrUn 99.057 106 1 0 1896 2001 48519602 48519707 2.890000e-44 191.0
98 TraesCS1A01G293800 chrUn 99.057 106 1 0 1896 2001 77783865 77783760 2.890000e-44 191.0
99 TraesCS1A01G293800 chrUn 96.364 110 4 0 126 235 94014509 94014618 1.740000e-41 182.0
100 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 24082295 24082403 2.910000e-39 174.0
101 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 38364971 38364863 2.910000e-39 174.0
102 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 200687458 200687566 2.910000e-39 174.0
103 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 243495240 243495132 2.910000e-39 174.0
104 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 366247791 366247899 2.910000e-39 174.0
105 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 378632305 378632197 2.910000e-39 174.0
106 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 442114086 442113978 2.910000e-39 174.0
107 TraesCS1A01G293800 chrUn 95.413 109 5 0 127 235 447023770 447023878 2.910000e-39 174.0
108 TraesCS1A01G293800 chr3A 100.000 109 0 0 127 235 614468532 614468424 1.340000e-47 202.0
109 TraesCS1A01G293800 chr5D 100.000 108 0 0 127 234 70640591 70640484 4.800000e-47 200.0
110 TraesCS1A01G293800 chr5D 98.182 110 2 0 126 235 231790588 231790479 8.040000e-45 193.0
111 TraesCS1A01G293800 chr5D 87.333 150 16 3 87 235 466140007 466139860 1.350000e-37 169.0
112 TraesCS1A01G293800 chr5D 73.770 366 79 12 6325 6677 48314178 48313817 2.300000e-25 128.0
113 TraesCS1A01G293800 chr3D 99.074 108 1 0 127 234 560754611 560754718 2.230000e-45 195.0
114 TraesCS1A01G293800 chr3D 88.158 152 14 3 87 235 439741205 439741055 2.250000e-40 178.0
115 TraesCS1A01G293800 chr4D 95.495 111 5 0 127 237 419491531 419491641 2.250000e-40 178.0
116 TraesCS1A01G293800 chr4D 96.296 108 4 0 127 234 497184521 497184414 2.250000e-40 178.0
117 TraesCS1A01G293800 chr4D 93.333 120 6 2 119 238 66516571 66516454 8.090000e-40 176.0
118 TraesCS1A01G293800 chr4D 86.184 152 16 4 87 235 176370276 176370425 8.150000e-35 159.0
119 TraesCS1A01G293800 chr7D 87.013 154 15 4 86 235 135810784 135810936 1.350000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G293800 chr1A 489169665 489177511 7846 False 7364.000000 14491 100.000000 1 7847 2 chr1A.!!$F6 7846
1 TraesCS1A01G293800 chr6B 118851922 118856250 4328 True 7799.000000 7799 99.191000 1996 6323 1 chr6B.!!$R1 4327
2 TraesCS1A01G293800 chr6B 120682592 120684182 1590 True 557.466667 1170 90.225667 540 6691 3 chr6B.!!$R3 6151
3 TraesCS1A01G293800 chr4A 66755288 66759614 4326 True 7792.000000 7792 99.168000 1996 6323 1 chr4A.!!$R2 4327
4 TraesCS1A01G293800 chr4A 90072922 90077253 4331 False 7784.000000 7784 99.100000 1996 6327 1 chr4A.!!$F1 4331
5 TraesCS1A01G293800 chr4A 59877479 59881806 4327 True 7782.000000 7782 99.122000 1996 6323 1 chr4A.!!$R1 4327
6 TraesCS1A01G293800 chr4A 90880929 90885257 4328 False 7782.000000 7782 99.122000 1996 6323 1 chr4A.!!$F2 4327
7 TraesCS1A01G293800 chr2B 244493573 244497901 4328 False 7788.000000 7788 99.145000 1996 6323 1 chr2B.!!$F1 4327
8 TraesCS1A01G293800 chr4B 510727203 510731531 4328 True 7782.000000 7782 99.122000 1996 6323 1 chr4B.!!$R2 4327
9 TraesCS1A01G293800 chr2A 749752497 749757796 5299 False 4011.000000 7779 99.165500 1762 6328 2 chr2A.!!$F1 4566
10 TraesCS1A01G293800 chr1B 500578364 500582697 4333 True 7775.000000 7775 99.054000 1997 6329 1 chr1B.!!$R1 4332
11 TraesCS1A01G293800 chr1B 523228054 523232043 3989 False 750.000000 1757 89.534250 234 7608 4 chr1B.!!$F2 7374
12 TraesCS1A01G293800 chr1B 523236665 523237761 1096 False 504.000000 797 83.060500 234 1374 2 chr1B.!!$F3 1140
13 TraesCS1A01G293800 chr1B 525898761 525899362 601 False 207.000000 207 73.742000 1039 1662 1 chr1B.!!$F1 623
14 TraesCS1A01G293800 chr1D 396318770 396320490 1720 True 769.500000 918 84.228000 541 7608 2 chr1D.!!$R4 7067
15 TraesCS1A01G293800 chr1D 396282185 396287041 4856 True 463.400000 1288 87.707200 1 7847 5 chr1D.!!$R3 7846
16 TraesCS1A01G293800 chr6D 50732287 50737912 5625 False 580.100000 1136 88.447500 619 7846 4 chr6D.!!$F1 7227
17 TraesCS1A01G293800 chr6A 64350545 64352133 1588 True 780.500000 1134 85.768000 540 6689 2 chr6A.!!$R5 6149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 2559 0.103937 AGACCTAATCGCTGAGCTGC 59.896 55.000 1.78 0.00 0.00 5.25 F
783 2707 1.605451 TGAACCGAGAGCCCGAGAA 60.605 57.895 0.00 0.00 0.00 2.87 F
1904 3863 0.179145 ATTGTCTTACGACGGAGCCG 60.179 55.000 7.48 7.48 43.21 5.52 F
1948 4044 0.526524 GGAACAGAGACGGCATCGAG 60.527 60.000 0.00 0.00 40.11 4.04 F
1974 4070 1.375140 TTGAGCAGAGCCGCAAGAG 60.375 57.895 0.00 0.00 43.02 2.85 F
1976 4072 1.519013 GAGCAGAGCCGCAAGAGAG 60.519 63.158 0.00 0.00 43.02 3.20 F
2037 4730 1.857318 CTCTGCACTCCGTCGTCAGT 61.857 60.000 0.00 0.00 0.00 3.41 F
4452 7146 1.228583 TGACTGGCTCCTCGTCACT 60.229 57.895 7.27 0.00 33.15 3.41 F
5514 8208 0.179073 GCGGATGCCACAGAGTACAT 60.179 55.000 0.00 0.00 33.98 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 3862 0.598680 GATCGGGACAAGGAGCATCG 60.599 60.000 0.00 0.00 34.37 3.84 R
1930 4026 1.142778 GCTCGATGCCGTCTCTGTTC 61.143 60.000 0.00 0.00 37.05 3.18 R
3744 6438 5.357257 TCTTAGAACGAAACTCAAGCTTGT 58.643 37.500 25.19 6.68 0.00 3.16 R
4077 6771 1.696063 GATGCCATGCAACATAGGGT 58.304 50.000 0.00 0.00 43.62 4.34 R
4393 7087 2.943978 CGAAGAAGGCCGACCCACT 61.944 63.158 0.00 0.00 36.11 4.00 R
4452 7146 1.007734 GACGTTGACGAGTCAGCCA 60.008 57.895 10.87 0.00 41.13 4.75 R
4830 7524 0.248458 AAAACCGCGAGCAACAAGTG 60.248 50.000 8.23 0.00 0.00 3.16 R
6592 9286 0.108424 CCTCTGTCCAGAAAGCTCCG 60.108 60.000 0.00 0.00 36.94 4.63 R
7513 12531 0.173708 CTAGAACACCGGCCAGAGTC 59.826 60.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.400845 GCTGACGCTGCAATAATATGATG 58.599 43.478 0.00 0.00 0.00 3.07
115 276 8.880768 ATTTTGTTTTAAAGATCTCATCGACG 57.119 30.769 0.00 0.00 0.00 5.12
117 278 5.716094 TGTTTTAAAGATCTCATCGACGGA 58.284 37.500 0.00 0.00 0.00 4.69
118 279 6.160684 TGTTTTAAAGATCTCATCGACGGAA 58.839 36.000 0.00 0.00 0.00 4.30
120 281 7.333423 TGTTTTAAAGATCTCATCGACGGAAAT 59.667 33.333 0.00 0.00 0.00 2.17
121 282 7.843490 TTTAAAGATCTCATCGACGGAAATT 57.157 32.000 0.00 0.00 0.00 1.82
122 283 5.975410 AAAGATCTCATCGACGGAAATTC 57.025 39.130 0.00 0.00 0.00 2.17
123 284 4.655762 AGATCTCATCGACGGAAATTCA 57.344 40.909 0.00 0.00 0.00 2.57
124 285 5.011090 AGATCTCATCGACGGAAATTCAA 57.989 39.130 0.00 0.00 0.00 2.69
126 287 6.051717 AGATCTCATCGACGGAAATTCAAAT 58.948 36.000 0.00 0.00 0.00 2.32
127 288 7.210174 AGATCTCATCGACGGAAATTCAAATA 58.790 34.615 0.00 0.00 0.00 1.40
129 290 6.338146 TCTCATCGACGGAAATTCAAATACT 58.662 36.000 0.00 0.00 0.00 2.12
132 293 4.186159 TCGACGGAAATTCAAATACTCCC 58.814 43.478 0.00 0.00 0.00 4.30
133 294 4.081309 TCGACGGAAATTCAAATACTCCCT 60.081 41.667 0.00 0.00 0.00 4.20
134 295 4.270325 CGACGGAAATTCAAATACTCCCTC 59.730 45.833 0.00 0.00 0.00 4.30
135 296 5.429130 GACGGAAATTCAAATACTCCCTCT 58.571 41.667 0.00 0.00 0.00 3.69
137 298 5.186198 CGGAAATTCAAATACTCCCTCTGT 58.814 41.667 0.00 0.00 0.00 3.41
138 299 5.648092 CGGAAATTCAAATACTCCCTCTGTT 59.352 40.000 0.00 0.00 0.00 3.16
139 300 6.183360 CGGAAATTCAAATACTCCCTCTGTTC 60.183 42.308 0.00 0.00 0.00 3.18
140 301 6.659242 GGAAATTCAAATACTCCCTCTGTTCA 59.341 38.462 0.00 0.00 0.00 3.18
141 302 7.362142 GGAAATTCAAATACTCCCTCTGTTCAC 60.362 40.741 0.00 0.00 0.00 3.18
142 303 5.825593 TTCAAATACTCCCTCTGTTCACT 57.174 39.130 0.00 0.00 0.00 3.41
143 304 5.825593 TCAAATACTCCCTCTGTTCACTT 57.174 39.130 0.00 0.00 0.00 3.16
144 305 6.187727 TCAAATACTCCCTCTGTTCACTTT 57.812 37.500 0.00 0.00 0.00 2.66
145 306 6.601332 TCAAATACTCCCTCTGTTCACTTTT 58.399 36.000 0.00 0.00 0.00 2.27
146 307 7.741785 TCAAATACTCCCTCTGTTCACTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
147 308 8.383175 TCAAATACTCCCTCTGTTCACTTTTAT 58.617 33.333 0.00 0.00 0.00 1.40
148 309 9.667107 CAAATACTCCCTCTGTTCACTTTTATA 57.333 33.333 0.00 0.00 0.00 0.98
150 311 9.892130 AATACTCCCTCTGTTCACTTTTATAAG 57.108 33.333 0.00 0.00 37.40 1.73
151 312 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
153 314 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
154 315 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
155 316 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
157 318 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
158 319 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
160 321 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
161 322 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
162 323 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
163 324 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
170 331 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
171 332 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
172 333 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
173 334 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
174 335 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
176 337 6.147581 CCTTGAAGACATTTCAGACAATGTG 58.852 40.000 12.82 2.31 45.55 3.21
177 338 5.112220 TGAAGACATTTCAGACAATGTGC 57.888 39.130 12.82 7.29 45.55 4.57
178 339 4.579753 TGAAGACATTTCAGACAATGTGCA 59.420 37.500 12.82 0.00 45.55 4.57
179 340 5.067544 TGAAGACATTTCAGACAATGTGCAA 59.932 36.000 12.82 0.00 45.55 4.08
180 341 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
181 342 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
182 343 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
183 344 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
184 345 5.521010 ACATTTCAGACAATGTGCAAAACAG 59.479 36.000 0.00 0.00 44.19 3.16
185 346 3.082698 TCAGACAATGTGCAAAACAGC 57.917 42.857 0.00 0.00 43.64 4.40
186 347 2.129607 CAGACAATGTGCAAAACAGCC 58.870 47.619 0.00 0.00 43.64 4.85
187 348 2.034124 AGACAATGTGCAAAACAGCCT 58.966 42.857 0.00 0.00 43.64 4.58
188 349 3.004629 CAGACAATGTGCAAAACAGCCTA 59.995 43.478 0.00 0.00 43.64 3.93
189 350 3.828451 AGACAATGTGCAAAACAGCCTAT 59.172 39.130 0.00 0.00 43.64 2.57
190 351 4.281688 AGACAATGTGCAAAACAGCCTATT 59.718 37.500 0.00 0.00 43.64 1.73
191 352 4.959723 ACAATGTGCAAAACAGCCTATTT 58.040 34.783 0.00 0.00 43.64 1.40
192 353 5.367302 ACAATGTGCAAAACAGCCTATTTT 58.633 33.333 0.00 0.00 43.64 1.82
193 354 5.236911 ACAATGTGCAAAACAGCCTATTTTG 59.763 36.000 3.83 3.83 45.68 2.44
194 355 4.662468 TGTGCAAAACAGCCTATTTTGA 57.338 36.364 12.19 0.00 45.75 2.69
195 356 4.619973 TGTGCAAAACAGCCTATTTTGAG 58.380 39.130 12.19 0.00 45.75 3.02
196 357 4.099266 TGTGCAAAACAGCCTATTTTGAGT 59.901 37.500 12.19 0.00 45.75 3.41
197 358 5.049828 GTGCAAAACAGCCTATTTTGAGTT 58.950 37.500 12.19 0.00 45.75 3.01
198 359 5.049167 TGCAAAACAGCCTATTTTGAGTTG 58.951 37.500 12.19 4.12 45.75 3.16
199 360 5.049828 GCAAAACAGCCTATTTTGAGTTGT 58.950 37.500 12.19 0.00 45.75 3.32
200 361 5.175673 GCAAAACAGCCTATTTTGAGTTGTC 59.824 40.000 12.19 0.00 45.75 3.18
201 362 6.507023 CAAAACAGCCTATTTTGAGTTGTCT 58.493 36.000 1.96 0.00 45.75 3.41
202 363 5.695851 AACAGCCTATTTTGAGTTGTCTG 57.304 39.130 0.00 0.00 0.00 3.51
203 364 4.973168 ACAGCCTATTTTGAGTTGTCTGA 58.027 39.130 0.00 0.00 0.00 3.27
204 365 5.376625 ACAGCCTATTTTGAGTTGTCTGAA 58.623 37.500 0.00 0.00 0.00 3.02
205 366 5.827797 ACAGCCTATTTTGAGTTGTCTGAAA 59.172 36.000 0.00 0.00 0.00 2.69
206 367 6.145535 CAGCCTATTTTGAGTTGTCTGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
207 368 5.049405 AGCCTATTTTGAGTTGTCTGAAACG 60.049 40.000 0.00 0.00 35.13 3.60
208 369 5.049680 GCCTATTTTGAGTTGTCTGAAACGA 60.050 40.000 0.00 0.00 35.13 3.85
209 370 6.363473 CCTATTTTGAGTTGTCTGAAACGAC 58.637 40.000 0.00 0.00 41.93 4.34
220 381 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
221 382 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
222 383 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
223 384 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
224 385 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
225 386 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
226 387 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
227 388 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
228 389 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
229 390 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
230 391 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
231 392 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
232 393 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
235 396 3.611766 AAAGTGAACGGAGGGAGTATG 57.388 47.619 0.00 0.00 0.00 2.39
244 405 4.028131 ACGGAGGGAGTATGTAACATTGA 58.972 43.478 0.00 0.00 0.00 2.57
301 470 8.703336 CAAGAAAAATAAAGTGCTAGCTTTTCC 58.297 33.333 22.41 8.44 39.22 3.13
344 521 7.578310 ATGCATGCATGAGTAGATTAAAGTT 57.422 32.000 31.74 2.23 35.03 2.66
345 522 7.395190 TGCATGCATGAGTAGATTAAAGTTT 57.605 32.000 30.64 0.00 0.00 2.66
346 523 8.504812 TGCATGCATGAGTAGATTAAAGTTTA 57.495 30.769 30.64 0.00 0.00 2.01
347 524 8.397906 TGCATGCATGAGTAGATTAAAGTTTAC 58.602 33.333 30.64 6.12 0.00 2.01
380 557 9.561069 TTAGGGAATGAATAGATTGAAGTTAGC 57.439 33.333 0.00 0.00 0.00 3.09
409 586 3.995048 CTCCTCAGCTCGTATACGTATGA 59.005 47.826 23.67 21.64 40.80 2.15
410 587 3.995048 TCCTCAGCTCGTATACGTATGAG 59.005 47.826 29.30 29.30 43.74 2.90
412 589 4.632251 CCTCAGCTCGTATACGTATGAGAT 59.368 45.833 33.30 20.52 43.65 2.75
414 591 6.313164 CCTCAGCTCGTATACGTATGAGATTA 59.687 42.308 33.30 15.91 43.65 1.75
417 594 8.228464 TCAGCTCGTATACGTATGAGATTAAAG 58.772 37.037 23.67 10.78 43.65 1.85
418 595 8.016229 CAGCTCGTATACGTATGAGATTAAAGT 58.984 37.037 23.67 0.00 43.65 2.66
419 596 8.566260 AGCTCGTATACGTATGAGATTAAAGTT 58.434 33.333 23.67 5.58 43.65 2.66
451 2310 8.561738 TTCTTAGGGAATGAATAGAACACAAC 57.438 34.615 0.00 0.00 0.00 3.32
470 2329 5.116983 CACAACGATTTGTTCCTTTATGCAC 59.883 40.000 0.00 0.00 43.89 4.57
476 2335 6.640499 CGATTTGTTCCTTTATGCACAAAAGA 59.360 34.615 19.90 4.95 41.26 2.52
477 2336 7.148918 CGATTTGTTCCTTTATGCACAAAAGAG 60.149 37.037 19.90 12.37 41.26 2.85
484 2343 2.124011 ATGCACAAAAGAGCAACACG 57.876 45.000 0.00 0.00 44.88 4.49
508 2367 6.309712 CATCTTAATGCGAAGAATGGATGT 57.690 37.500 0.00 0.00 38.89 3.06
510 2369 6.122850 TCTTAATGCGAAGAATGGATGTTG 57.877 37.500 0.00 0.00 32.46 3.33
513 2372 3.003394 TGCGAAGAATGGATGTTGGAT 57.997 42.857 0.00 0.00 0.00 3.41
514 2373 3.355378 TGCGAAGAATGGATGTTGGATT 58.645 40.909 0.00 0.00 0.00 3.01
516 2375 4.107622 GCGAAGAATGGATGTTGGATTTG 58.892 43.478 0.00 0.00 0.00 2.32
518 2377 5.713025 CGAAGAATGGATGTTGGATTTGTT 58.287 37.500 0.00 0.00 0.00 2.83
519 2378 6.158598 CGAAGAATGGATGTTGGATTTGTTT 58.841 36.000 0.00 0.00 0.00 2.83
520 2379 7.312154 CGAAGAATGGATGTTGGATTTGTTTA 58.688 34.615 0.00 0.00 0.00 2.01
521 2380 7.485913 CGAAGAATGGATGTTGGATTTGTTTAG 59.514 37.037 0.00 0.00 0.00 1.85
522 2381 6.633856 AGAATGGATGTTGGATTTGTTTAGC 58.366 36.000 0.00 0.00 0.00 3.09
523 2382 4.433186 TGGATGTTGGATTTGTTTAGCG 57.567 40.909 0.00 0.00 0.00 4.26
524 2383 3.823873 TGGATGTTGGATTTGTTTAGCGT 59.176 39.130 0.00 0.00 0.00 5.07
525 2384 4.279671 TGGATGTTGGATTTGTTTAGCGTT 59.720 37.500 0.00 0.00 0.00 4.84
527 2386 6.027749 GGATGTTGGATTTGTTTAGCGTTAG 58.972 40.000 0.00 0.00 0.00 2.34
528 2387 6.128117 GGATGTTGGATTTGTTTAGCGTTAGA 60.128 38.462 0.00 0.00 0.00 2.10
529 2388 5.992729 TGTTGGATTTGTTTAGCGTTAGAC 58.007 37.500 0.00 0.00 0.00 2.59
530 2389 4.914312 TGGATTTGTTTAGCGTTAGACG 57.086 40.909 0.00 0.00 45.88 4.18
597 2465 2.514592 CGCAGCCAATGGGACGAT 60.515 61.111 0.00 0.00 44.43 3.73
600 2468 1.750018 CAGCCAATGGGACGATGCA 60.750 57.895 0.00 0.00 35.59 3.96
609 2477 0.721718 GGGACGATGCAGTTCGAAAG 59.278 55.000 16.17 0.00 41.62 2.62
617 2520 4.267690 CGATGCAGTTCGAAAGCAACTATA 59.732 41.667 24.56 6.28 42.15 1.31
625 2528 7.488150 CAGTTCGAAAGCAACTATACATAGACA 59.512 37.037 0.00 0.00 32.74 3.41
641 2544 5.721960 ACATAGACAAGGTTCATGTAGACCT 59.278 40.000 10.89 10.89 31.67 3.85
651 2555 4.837896 TCATGTAGACCTAATCGCTGAG 57.162 45.455 0.00 0.00 0.00 3.35
655 2559 0.103937 AGACCTAATCGCTGAGCTGC 59.896 55.000 1.78 0.00 0.00 5.25
776 2700 2.432628 CCCACGTGAACCGAGAGC 60.433 66.667 19.30 0.00 40.70 4.09
777 2701 2.432628 CCACGTGAACCGAGAGCC 60.433 66.667 19.30 0.00 40.70 4.70
778 2702 2.432628 CACGTGAACCGAGAGCCC 60.433 66.667 10.90 0.00 40.70 5.19
779 2703 4.052229 ACGTGAACCGAGAGCCCG 62.052 66.667 0.00 0.00 40.70 6.13
780 2704 3.744719 CGTGAACCGAGAGCCCGA 61.745 66.667 0.00 0.00 39.56 5.14
781 2705 2.182030 GTGAACCGAGAGCCCGAG 59.818 66.667 0.00 0.00 0.00 4.63
782 2706 2.035155 TGAACCGAGAGCCCGAGA 59.965 61.111 0.00 0.00 0.00 4.04
783 2707 1.605451 TGAACCGAGAGCCCGAGAA 60.605 57.895 0.00 0.00 0.00 2.87
1150 3088 1.660917 GACGGCCTCCTCCTTATCG 59.339 63.158 0.00 0.00 0.00 2.92
1265 3206 2.209064 GACACCACGCGCTTCCTCTA 62.209 60.000 5.73 0.00 0.00 2.43
1530 3489 2.579738 GAGACGGGCAGGAGGTTC 59.420 66.667 0.00 0.00 0.00 3.62
1895 3854 6.376177 GTTCCCCAAAACTTATTGTCTTACG 58.624 40.000 0.00 0.00 0.00 3.18
1896 3855 5.867330 TCCCCAAAACTTATTGTCTTACGA 58.133 37.500 0.00 0.00 0.00 3.43
1897 3856 5.702209 TCCCCAAAACTTATTGTCTTACGAC 59.298 40.000 0.00 0.00 40.64 4.34
1899 3858 5.390145 CCCAAAACTTATTGTCTTACGACGG 60.390 44.000 0.00 0.00 43.21 4.79
1901 3860 6.400727 CCAAAACTTATTGTCTTACGACGGAG 60.401 42.308 0.00 0.00 43.21 4.63
1903 3862 2.857592 TATTGTCTTACGACGGAGCC 57.142 50.000 0.00 0.00 43.21 4.70
1904 3863 0.179145 ATTGTCTTACGACGGAGCCG 60.179 55.000 7.48 7.48 43.21 5.52
1905 3864 1.236616 TTGTCTTACGACGGAGCCGA 61.237 55.000 16.83 0.00 43.21 5.54
1906 3865 1.028330 TGTCTTACGACGGAGCCGAT 61.028 55.000 16.83 3.29 43.21 4.18
1907 3866 0.591741 GTCTTACGACGGAGCCGATG 60.592 60.000 16.83 9.53 42.83 3.84
1908 3867 1.944676 CTTACGACGGAGCCGATGC 60.945 63.158 16.83 3.74 42.83 3.91
1920 4016 2.721167 CCGATGCTCCTTGTCCCGA 61.721 63.158 0.00 0.00 0.00 5.14
1924 4020 2.032860 ATGCTCCTTGTCCCGATCGG 62.033 60.000 27.65 27.65 0.00 4.18
1925 4021 2.423898 GCTCCTTGTCCCGATCGGA 61.424 63.158 35.42 18.23 38.83 4.55
1932 4028 4.826404 TCCCGATCGGAGCCGGAA 62.826 66.667 35.42 8.40 43.80 4.30
1934 4030 3.833645 CCGATCGGAGCCGGAACA 61.834 66.667 30.62 0.00 43.80 3.18
1936 4032 2.771639 CGATCGGAGCCGGAACAGA 61.772 63.158 5.05 4.43 40.25 3.41
1937 4033 1.066587 GATCGGAGCCGGAACAGAG 59.933 63.158 5.05 0.00 40.25 3.35
1938 4034 1.379977 ATCGGAGCCGGAACAGAGA 60.380 57.895 5.05 0.00 40.25 3.10
1944 4040 2.579201 CCGGAACAGAGACGGCAT 59.421 61.111 0.00 0.00 41.23 4.40
1948 4044 0.526524 GGAACAGAGACGGCATCGAG 60.527 60.000 0.00 0.00 40.11 4.04
1954 4050 4.933064 GACGGCATCGAGCGGGAG 62.933 72.222 15.12 4.89 46.82 4.30
1963 4059 2.125350 GAGCGGGAGGTTGAGCAG 60.125 66.667 0.00 0.00 43.00 4.24
1964 4060 2.604686 AGCGGGAGGTTGAGCAGA 60.605 61.111 0.00 0.00 37.18 4.26
1966 4062 2.125350 CGGGAGGTTGAGCAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
1968 4064 2.125350 GGAGGTTGAGCAGAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
1970 4066 3.596066 GAGGTTGAGCAGAGCCGCA 62.596 63.158 0.00 0.00 0.00 5.69
1971 4067 2.669569 GGTTGAGCAGAGCCGCAA 60.670 61.111 0.00 0.00 0.00 4.85
1972 4068 2.684843 GGTTGAGCAGAGCCGCAAG 61.685 63.158 0.00 0.00 0.00 4.01
1973 4069 1.669115 GTTGAGCAGAGCCGCAAGA 60.669 57.895 0.00 0.00 43.02 3.02
1974 4070 1.375140 TTGAGCAGAGCCGCAAGAG 60.375 57.895 0.00 0.00 43.02 2.85
1975 4071 1.820010 TTGAGCAGAGCCGCAAGAGA 61.820 55.000 0.00 0.00 43.02 3.10
1976 4072 1.519013 GAGCAGAGCCGCAAGAGAG 60.519 63.158 0.00 0.00 43.02 3.20
1977 4073 2.511145 GCAGAGCCGCAAGAGAGG 60.511 66.667 0.00 0.00 43.02 3.69
1984 4080 4.521062 CGCAAGAGAGGCCGGGAG 62.521 72.222 2.18 0.00 43.02 4.30
2037 4730 1.857318 CTCTGCACTCCGTCGTCAGT 61.857 60.000 0.00 0.00 0.00 3.41
2427 5120 2.442643 CGACCTTACCGGGGGCTA 60.443 66.667 6.32 0.00 36.97 3.93
2829 5522 4.870426 GCAATGTTCTTCGAGTTCCATCTA 59.130 41.667 0.00 0.00 0.00 1.98
2949 5642 3.519913 GAGGGACATTCTTCTTAGTGGGT 59.480 47.826 0.00 0.00 0.00 4.51
3624 6318 3.006430 TGCTTTCTCATCAACCGTACTCA 59.994 43.478 0.00 0.00 0.00 3.41
3744 6438 4.511454 GCATCTTCGTCCATATAACAAGCA 59.489 41.667 0.00 0.00 0.00 3.91
4077 6771 3.295304 CTGGTGGGCACGTCGATCA 62.295 63.158 0.00 0.00 0.00 2.92
4452 7146 1.228583 TGACTGGCTCCTCGTCACT 60.229 57.895 7.27 0.00 33.15 3.41
5358 8052 2.447443 TGAGGTCACTTCTCGTGCTAT 58.553 47.619 0.00 0.00 43.46 2.97
5514 8208 0.179073 GCGGATGCCACAGAGTACAT 60.179 55.000 0.00 0.00 33.98 2.29
5723 8417 0.324614 TTCGGCCTTCTCTGATGCAA 59.675 50.000 0.00 0.00 0.00 4.08
5738 8432 0.251742 TGCAAATTGGGCTGGTAGCT 60.252 50.000 0.00 0.00 41.99 3.32
5820 8514 0.905357 AGTGCTCGGAAACAGGCTAT 59.095 50.000 0.00 0.00 0.00 2.97
6334 9028 0.460459 GTCTTACAGCGAGGGAAGGC 60.460 60.000 0.00 0.00 0.00 4.35
6356 9050 2.490217 CTACGCCGAGGTGTGGAG 59.510 66.667 17.69 5.04 39.02 3.86
6542 9236 2.236146 ACGGCAATGTCATCTACCTGAA 59.764 45.455 0.00 0.00 0.00 3.02
6592 9286 1.556911 TGAGCAAGGAGGAGGTGATTC 59.443 52.381 0.00 0.00 0.00 2.52
6700 9404 3.938334 TCGCTACATTGCTTCAATTGCTA 59.062 39.130 0.00 0.00 31.05 3.49
6701 9405 4.576053 TCGCTACATTGCTTCAATTGCTAT 59.424 37.500 0.00 0.00 31.05 2.97
6702 9406 5.066375 TCGCTACATTGCTTCAATTGCTATT 59.934 36.000 0.00 0.00 31.05 1.73
6703 9407 6.259829 TCGCTACATTGCTTCAATTGCTATTA 59.740 34.615 0.00 0.00 31.05 0.98
6706 9410 7.917505 GCTACATTGCTTCAATTGCTATTAAGT 59.082 33.333 0.00 0.00 31.05 2.24
6708 9412 8.693542 ACATTGCTTCAATTGCTATTAAGTTC 57.306 30.769 0.00 0.00 31.05 3.01
6709 9413 8.306038 ACATTGCTTCAATTGCTATTAAGTTCA 58.694 29.630 0.00 0.00 31.05 3.18
6710 9414 8.589629 CATTGCTTCAATTGCTATTAAGTTCAC 58.410 33.333 0.00 0.00 31.05 3.18
6712 9416 7.829725 TGCTTCAATTGCTATTAAGTTCACAT 58.170 30.769 0.00 0.00 0.00 3.21
6713 9417 8.955388 TGCTTCAATTGCTATTAAGTTCACATA 58.045 29.630 0.00 0.00 0.00 2.29
6714 9418 9.956720 GCTTCAATTGCTATTAAGTTCACATAT 57.043 29.630 0.00 0.00 0.00 1.78
6740 9444 3.017265 GCACCTATTATGCAATGCACC 57.983 47.619 11.23 0.00 43.04 5.01
6741 9445 2.288395 GCACCTATTATGCAATGCACCC 60.288 50.000 11.23 0.00 43.04 4.61
6743 9447 3.575256 CACCTATTATGCAATGCACCCAT 59.425 43.478 11.23 5.45 43.04 4.00
6747 9451 6.603201 ACCTATTATGCAATGCACCCATATAC 59.397 38.462 11.23 0.00 43.04 1.47
6748 9452 6.602803 CCTATTATGCAATGCACCCATATACA 59.397 38.462 11.23 0.00 43.04 2.29
6749 9453 7.286087 CCTATTATGCAATGCACCCATATACAT 59.714 37.037 11.23 0.00 43.04 2.29
6752 9456 6.914654 ATGCAATGCACCCATATACATTTA 57.085 33.333 11.23 0.00 43.04 1.40
6753 9457 6.083098 TGCAATGCACCCATATACATTTAC 57.917 37.500 2.72 0.00 31.71 2.01
6755 9459 6.267242 TGCAATGCACCCATATACATTTACAT 59.733 34.615 2.72 0.00 31.71 2.29
6759 9476 5.009510 TGCACCCATATACATTTACATGTGC 59.990 40.000 9.11 0.00 43.92 4.57
6760 9477 5.564651 GCACCCATATACATTTACATGTGCC 60.565 44.000 9.11 0.00 43.92 5.01
6762 9479 6.939730 CACCCATATACATTTACATGTGCCTA 59.060 38.462 9.11 0.00 43.92 3.93
6764 9481 7.017155 ACCCATATACATTTACATGTGCCTAGA 59.983 37.037 9.11 0.00 43.92 2.43
6771 9488 6.097270 ACATTTACATGTGCCTAGATGCATTT 59.903 34.615 9.11 0.00 42.46 2.32
6773 9490 2.954318 ACATGTGCCTAGATGCATTTCC 59.046 45.455 0.00 0.00 44.30 3.13
6774 9491 2.804986 TGTGCCTAGATGCATTTCCA 57.195 45.000 0.00 0.00 44.30 3.53
6775 9492 3.301794 TGTGCCTAGATGCATTTCCAT 57.698 42.857 0.00 0.00 44.30 3.41
6777 9494 4.790937 TGTGCCTAGATGCATTTCCATTA 58.209 39.130 0.00 0.00 44.30 1.90
6778 9495 5.199723 TGTGCCTAGATGCATTTCCATTAA 58.800 37.500 0.00 0.00 44.30 1.40
6779 9496 5.300034 TGTGCCTAGATGCATTTCCATTAAG 59.700 40.000 0.00 0.00 44.30 1.85
6780 9497 5.300286 GTGCCTAGATGCATTTCCATTAAGT 59.700 40.000 0.00 0.00 44.30 2.24
6782 9499 6.183360 TGCCTAGATGCATTTCCATTAAGTTG 60.183 38.462 0.00 0.00 36.04 3.16
6783 9500 6.183360 GCCTAGATGCATTTCCATTAAGTTGT 60.183 38.462 0.00 0.00 0.00 3.32
6784 9501 7.631377 GCCTAGATGCATTTCCATTAAGTTGTT 60.631 37.037 0.00 0.00 0.00 2.83
6792 9509 7.467131 GCATTTCCATTAAGTTGTTTTGCAAGT 60.467 33.333 0.00 0.00 42.18 3.16
6793 9510 7.532682 TTTCCATTAAGTTGTTTTGCAAGTC 57.467 32.000 0.00 0.00 39.66 3.01
6795 9512 6.815089 TCCATTAAGTTGTTTTGCAAGTCAT 58.185 32.000 0.00 0.00 39.66 3.06
6797 9514 6.129115 CCATTAAGTTGTTTTGCAAGTCATCG 60.129 38.462 0.00 0.00 39.66 3.84
6798 9515 4.630894 AAGTTGTTTTGCAAGTCATCGA 57.369 36.364 0.00 0.00 39.66 3.59
6799 9516 4.630894 AGTTGTTTTGCAAGTCATCGAA 57.369 36.364 0.00 0.00 36.01 3.71
6800 9517 5.186996 AGTTGTTTTGCAAGTCATCGAAT 57.813 34.783 0.00 0.00 36.01 3.34
6801 9518 5.591099 AGTTGTTTTGCAAGTCATCGAATT 58.409 33.333 0.00 0.00 36.01 2.17
6802 9519 5.459762 AGTTGTTTTGCAAGTCATCGAATTG 59.540 36.000 0.00 0.06 40.05 2.32
6803 9520 5.180367 TGTTTTGCAAGTCATCGAATTGA 57.820 34.783 8.24 0.00 39.55 2.57
6805 9522 5.858049 TGTTTTGCAAGTCATCGAATTGATC 59.142 36.000 8.24 0.00 39.55 2.92
6806 9523 5.625921 TTTGCAAGTCATCGAATTGATCA 57.374 34.783 8.24 0.00 39.55 2.92
6807 9524 4.870221 TGCAAGTCATCGAATTGATCAG 57.130 40.909 8.24 0.00 39.55 2.90
6808 9525 4.256110 TGCAAGTCATCGAATTGATCAGT 58.744 39.130 8.24 0.00 39.55 3.41
6810 9527 4.093998 GCAAGTCATCGAATTGATCAGTGT 59.906 41.667 8.24 0.00 39.55 3.55
6811 9528 5.557388 CAAGTCATCGAATTGATCAGTGTG 58.443 41.667 0.00 0.00 39.55 3.82
6812 9529 4.825422 AGTCATCGAATTGATCAGTGTGT 58.175 39.130 0.00 0.00 34.13 3.72
6815 9532 3.676291 TCGAATTGATCAGTGTGTGGA 57.324 42.857 0.00 0.00 0.00 4.02
6816 9533 4.001618 TCGAATTGATCAGTGTGTGGAA 57.998 40.909 0.00 0.00 0.00 3.53
6817 9534 4.384940 TCGAATTGATCAGTGTGTGGAAA 58.615 39.130 0.00 0.00 0.00 3.13
6818 9535 4.213270 TCGAATTGATCAGTGTGTGGAAAC 59.787 41.667 0.00 0.00 0.00 2.78
6819 9536 4.214119 CGAATTGATCAGTGTGTGGAAACT 59.786 41.667 0.00 0.00 0.00 2.66
6820 9537 5.615544 CGAATTGATCAGTGTGTGGAAACTC 60.616 44.000 0.00 0.00 0.00 3.01
6821 9538 2.754472 TGATCAGTGTGTGGAAACTCG 58.246 47.619 0.00 0.00 0.00 4.18
6822 9539 2.069273 GATCAGTGTGTGGAAACTCGG 58.931 52.381 0.00 0.00 0.00 4.63
6824 9541 1.202486 TCAGTGTGTGGAAACTCGGAC 60.202 52.381 0.00 0.00 0.00 4.79
6826 9543 1.208535 AGTGTGTGGAAACTCGGACAA 59.791 47.619 0.00 0.00 0.00 3.18
6827 9544 2.011222 GTGTGTGGAAACTCGGACAAA 58.989 47.619 0.00 0.00 0.00 2.83
6828 9545 2.031683 GTGTGTGGAAACTCGGACAAAG 59.968 50.000 0.00 0.00 0.00 2.77
6829 9546 2.285977 GTGTGGAAACTCGGACAAAGT 58.714 47.619 0.00 0.00 0.00 2.66
6832 9549 3.139077 GTGGAAACTCGGACAAAGTCAT 58.861 45.455 0.00 0.00 33.68 3.06
6834 9551 2.742589 GGAAACTCGGACAAAGTCATCC 59.257 50.000 0.00 0.00 33.68 3.51
6835 9552 3.557264 GGAAACTCGGACAAAGTCATCCT 60.557 47.826 0.00 0.00 33.27 3.24
6839 9556 5.422214 ACTCGGACAAAGTCATCCTATTT 57.578 39.130 0.00 0.00 33.68 1.40
6842 9559 8.246430 ACTCGGACAAAGTCATCCTATTTATA 57.754 34.615 0.00 0.00 33.68 0.98
6844 9561 9.712305 CTCGGACAAAGTCATCCTATTTATATT 57.288 33.333 0.00 0.00 33.68 1.28
6867 9584 5.705609 AACCAAACAATTAGCACTACTGG 57.294 39.130 0.00 0.00 0.00 4.00
6868 9585 4.079253 ACCAAACAATTAGCACTACTGGG 58.921 43.478 0.00 0.00 0.00 4.45
6869 9586 3.119495 CCAAACAATTAGCACTACTGGGC 60.119 47.826 0.00 0.00 0.00 5.36
6870 9587 2.420058 ACAATTAGCACTACTGGGCC 57.580 50.000 0.00 0.00 0.00 5.80
6872 9589 2.292267 CAATTAGCACTACTGGGCCAG 58.708 52.381 31.62 31.62 37.52 4.85
6873 9590 1.879575 ATTAGCACTACTGGGCCAGA 58.120 50.000 38.99 21.06 35.18 3.86
6874 9591 0.902531 TTAGCACTACTGGGCCAGAC 59.097 55.000 38.99 20.91 35.18 3.51
6875 9592 0.252057 TAGCACTACTGGGCCAGACA 60.252 55.000 38.99 23.81 35.18 3.41
6876 9593 0.911525 AGCACTACTGGGCCAGACAT 60.912 55.000 38.99 20.05 35.18 3.06
6877 9594 0.830648 GCACTACTGGGCCAGACATA 59.169 55.000 38.99 20.10 35.18 2.29
6878 9595 1.209504 GCACTACTGGGCCAGACATAA 59.790 52.381 38.99 16.92 35.18 1.90
6879 9596 2.355716 GCACTACTGGGCCAGACATAAA 60.356 50.000 38.99 15.25 35.18 1.40
6880 9597 3.872240 GCACTACTGGGCCAGACATAAAA 60.872 47.826 38.99 13.61 35.18 1.52
6881 9598 4.526970 CACTACTGGGCCAGACATAAAAT 58.473 43.478 38.99 16.97 35.18 1.82
6882 9599 4.949856 CACTACTGGGCCAGACATAAAATT 59.050 41.667 38.99 16.22 35.18 1.82
6883 9600 4.949856 ACTACTGGGCCAGACATAAAATTG 59.050 41.667 38.99 17.08 35.18 2.32
6884 9601 2.497273 ACTGGGCCAGACATAAAATTGC 59.503 45.455 38.99 0.00 35.18 3.56
6885 9602 2.762327 CTGGGCCAGACATAAAATTGCT 59.238 45.455 29.96 0.00 32.44 3.91
6886 9603 2.760092 TGGGCCAGACATAAAATTGCTC 59.240 45.455 0.00 0.00 0.00 4.26
6887 9604 3.026694 GGGCCAGACATAAAATTGCTCT 58.973 45.455 4.39 0.00 0.00 4.09
6889 9606 3.950395 GGCCAGACATAAAATTGCTCTCT 59.050 43.478 0.00 0.00 0.00 3.10
6893 9610 5.220815 CCAGACATAAAATTGCTCTCTCTGC 60.221 44.000 0.00 0.00 0.00 4.26
6894 9611 5.353400 CAGACATAAAATTGCTCTCTCTGCA 59.647 40.000 0.00 0.00 38.80 4.41
6901 9618 1.233019 TGCTCTCTCTGCAAACAAGC 58.767 50.000 0.00 0.00 37.51 4.01
6902 9619 0.520847 GCTCTCTCTGCAAACAAGCC 59.479 55.000 0.00 0.00 0.00 4.35
6903 9620 1.888215 CTCTCTCTGCAAACAAGCCA 58.112 50.000 0.00 0.00 0.00 4.75
6904 9621 2.224606 CTCTCTCTGCAAACAAGCCAA 58.775 47.619 0.00 0.00 0.00 4.52
6905 9622 2.620115 CTCTCTCTGCAAACAAGCCAAA 59.380 45.455 0.00 0.00 0.00 3.28
6906 9623 3.023119 TCTCTCTGCAAACAAGCCAAAA 58.977 40.909 0.00 0.00 0.00 2.44
6907 9624 3.446873 TCTCTCTGCAAACAAGCCAAAAA 59.553 39.130 0.00 0.00 0.00 1.94
6909 9626 4.121317 TCTCTGCAAACAAGCCAAAAATG 58.879 39.130 0.00 0.00 0.00 2.32
6911 9628 3.870419 TCTGCAAACAAGCCAAAAATGAC 59.130 39.130 0.00 0.00 0.00 3.06
6914 9631 4.094590 TGCAAACAAGCCAAAAATGACTTG 59.905 37.500 3.75 3.75 43.99 3.16
6915 9632 4.496175 GCAAACAAGCCAAAAATGACTTGG 60.496 41.667 9.20 0.00 45.26 3.61
6916 9633 3.473923 ACAAGCCAAAAATGACTTGGG 57.526 42.857 9.20 0.00 43.11 4.12
6917 9634 3.037549 ACAAGCCAAAAATGACTTGGGA 58.962 40.909 9.20 0.00 43.11 4.37
6918 9635 3.181466 ACAAGCCAAAAATGACTTGGGAC 60.181 43.478 9.20 0.00 43.11 4.46
6919 9636 1.613437 AGCCAAAAATGACTTGGGACG 59.387 47.619 3.91 0.00 43.11 4.79
6920 9637 1.611491 GCCAAAAATGACTTGGGACGA 59.389 47.619 3.91 0.00 43.11 4.20
6921 9638 2.035321 GCCAAAAATGACTTGGGACGAA 59.965 45.455 3.91 0.00 43.11 3.85
6923 9640 4.799255 GCCAAAAATGACTTGGGACGAATT 60.799 41.667 3.91 0.00 43.11 2.17
6924 9641 4.923281 CCAAAAATGACTTGGGACGAATTC 59.077 41.667 0.00 0.00 39.82 2.17
6925 9642 4.783764 AAAATGACTTGGGACGAATTCC 57.216 40.909 0.00 0.00 45.00 3.01
6926 9643 3.721087 AATGACTTGGGACGAATTCCT 57.279 42.857 0.00 0.00 45.09 3.36
6927 9644 4.837093 AATGACTTGGGACGAATTCCTA 57.163 40.909 0.00 0.00 45.09 2.94
6928 9645 3.604875 TGACTTGGGACGAATTCCTAC 57.395 47.619 0.00 0.00 45.09 3.18
6929 9646 2.901192 TGACTTGGGACGAATTCCTACA 59.099 45.455 0.00 0.00 45.09 2.74
6930 9647 3.517901 TGACTTGGGACGAATTCCTACAT 59.482 43.478 0.00 0.00 45.09 2.29
6931 9648 4.712829 TGACTTGGGACGAATTCCTACATA 59.287 41.667 0.00 0.00 45.09 2.29
6932 9649 5.019785 ACTTGGGACGAATTCCTACATAC 57.980 43.478 0.00 0.00 45.09 2.39
6933 9650 4.468510 ACTTGGGACGAATTCCTACATACA 59.531 41.667 0.00 0.00 45.09 2.29
6934 9651 5.046159 ACTTGGGACGAATTCCTACATACAA 60.046 40.000 0.00 0.00 45.09 2.41
6935 9652 5.623956 TGGGACGAATTCCTACATACAAT 57.376 39.130 0.00 0.00 45.09 2.71
6936 9653 5.364778 TGGGACGAATTCCTACATACAATG 58.635 41.667 0.00 0.00 45.09 2.82
6938 9655 4.213482 GGACGAATTCCTACATACAATGCC 59.787 45.833 0.00 0.00 41.95 4.40
6939 9656 5.036117 ACGAATTCCTACATACAATGCCT 57.964 39.130 0.00 0.00 0.00 4.75
6940 9657 6.169557 ACGAATTCCTACATACAATGCCTA 57.830 37.500 0.00 0.00 0.00 3.93
6941 9658 6.223852 ACGAATTCCTACATACAATGCCTAG 58.776 40.000 0.00 0.00 0.00 3.02
6942 9659 6.041637 ACGAATTCCTACATACAATGCCTAGA 59.958 38.462 0.00 0.00 0.00 2.43
6943 9660 6.366332 CGAATTCCTACATACAATGCCTAGAC 59.634 42.308 0.00 0.00 0.00 2.59
6944 9661 6.747414 ATTCCTACATACAATGCCTAGACA 57.253 37.500 0.00 0.00 0.00 3.41
6945 9662 6.747414 TTCCTACATACAATGCCTAGACAT 57.253 37.500 0.00 0.00 0.00 3.06
6947 9664 8.435931 TTCCTACATACAATGCCTAGACATAT 57.564 34.615 0.00 0.00 0.00 1.78
6948 9665 8.067751 TCCTACATACAATGCCTAGACATATC 57.932 38.462 0.00 0.00 0.00 1.63
6949 9666 7.124298 TCCTACATACAATGCCTAGACATATCC 59.876 40.741 0.00 0.00 0.00 2.59
6950 9667 6.942163 ACATACAATGCCTAGACATATCCT 57.058 37.500 0.00 0.00 0.00 3.24
6951 9668 6.705302 ACATACAATGCCTAGACATATCCTG 58.295 40.000 0.00 0.00 0.00 3.86
6952 9669 4.013267 ACAATGCCTAGACATATCCTGC 57.987 45.455 0.00 0.00 0.00 4.85
6953 9670 3.392285 ACAATGCCTAGACATATCCTGCA 59.608 43.478 0.00 0.00 0.00 4.41
6954 9671 3.692257 ATGCCTAGACATATCCTGCAC 57.308 47.619 0.00 0.00 0.00 4.57
6955 9672 2.682594 TGCCTAGACATATCCTGCACT 58.317 47.619 0.00 0.00 0.00 4.40
6957 9674 4.223144 TGCCTAGACATATCCTGCACTTA 58.777 43.478 0.00 0.00 0.00 2.24
6958 9675 4.840680 TGCCTAGACATATCCTGCACTTAT 59.159 41.667 0.00 0.00 0.00 1.73
6959 9676 6.016555 TGCCTAGACATATCCTGCACTTATA 58.983 40.000 0.00 0.00 0.00 0.98
6961 9678 6.153680 GCCTAGACATATCCTGCACTTATACT 59.846 42.308 0.00 0.00 0.00 2.12
6962 9679 7.629652 GCCTAGACATATCCTGCACTTATACTC 60.630 44.444 0.00 0.00 0.00 2.59
6971 11559 6.226052 TCCTGCACTTATACTCTGCAATATG 58.774 40.000 0.00 0.00 40.33 1.78
6987 11575 6.524734 TGCAATATGGGAGTAAGATACACTG 58.475 40.000 0.00 0.00 0.00 3.66
7343 11972 3.845781 AACGATCATCACTATTGGGCT 57.154 42.857 0.00 0.00 0.00 5.19
7363 11992 4.023365 GGCTAGGCATAAAATTGCTCTCTG 60.023 45.833 12.16 0.00 42.38 3.35
7487 12466 8.567948 TGTATCTTGATCAAAGGAGTTTGTTTC 58.432 33.333 9.88 0.00 43.22 2.78
7496 12514 1.341209 GGAGTTTGTTTCCAGGCAAGG 59.659 52.381 0.00 0.00 34.74 3.61
7497 12515 2.306847 GAGTTTGTTTCCAGGCAAGGA 58.693 47.619 0.00 0.00 35.41 3.36
7498 12516 2.031870 AGTTTGTTTCCAGGCAAGGAC 58.968 47.619 0.00 0.00 37.42 3.85
7499 12517 1.754226 GTTTGTTTCCAGGCAAGGACA 59.246 47.619 0.00 0.00 37.42 4.02
7500 12518 2.151502 TTGTTTCCAGGCAAGGACAA 57.848 45.000 0.00 0.00 37.42 3.18
7501 12519 1.398692 TGTTTCCAGGCAAGGACAAC 58.601 50.000 0.00 7.39 37.42 3.32
7502 12520 1.341482 TGTTTCCAGGCAAGGACAACA 60.341 47.619 15.54 15.54 37.42 3.33
7503 12521 1.067060 GTTTCCAGGCAAGGACAACAC 59.933 52.381 0.00 0.00 37.42 3.32
7504 12522 0.817634 TTCCAGGCAAGGACAACACG 60.818 55.000 0.00 0.00 37.42 4.49
7505 12523 2.260869 CCAGGCAAGGACAACACGG 61.261 63.158 0.00 0.00 0.00 4.94
7506 12524 1.227823 CAGGCAAGGACAACACGGA 60.228 57.895 0.00 0.00 0.00 4.69
7507 12525 0.817634 CAGGCAAGGACAACACGGAA 60.818 55.000 0.00 0.00 0.00 4.30
7508 12526 0.106918 AGGCAAGGACAACACGGAAA 60.107 50.000 0.00 0.00 0.00 3.13
7509 12527 0.310854 GGCAAGGACAACACGGAAAG 59.689 55.000 0.00 0.00 0.00 2.62
7510 12528 0.317854 GCAAGGACAACACGGAAAGC 60.318 55.000 0.00 0.00 0.00 3.51
7511 12529 1.021202 CAAGGACAACACGGAAAGCA 58.979 50.000 0.00 0.00 0.00 3.91
7512 12530 1.403679 CAAGGACAACACGGAAAGCAA 59.596 47.619 0.00 0.00 0.00 3.91
7513 12531 1.308998 AGGACAACACGGAAAGCAAG 58.691 50.000 0.00 0.00 0.00 4.01
7514 12532 1.134220 AGGACAACACGGAAAGCAAGA 60.134 47.619 0.00 0.00 0.00 3.02
7515 12533 1.002792 GGACAACACGGAAAGCAAGAC 60.003 52.381 0.00 0.00 0.00 3.01
7516 12534 1.940613 GACAACACGGAAAGCAAGACT 59.059 47.619 0.00 0.00 0.00 3.24
7517 12535 1.940613 ACAACACGGAAAGCAAGACTC 59.059 47.619 0.00 0.00 0.00 3.36
7522 12540 1.301677 CGGAAAGCAAGACTCTGGCC 61.302 60.000 1.37 0.00 28.98 5.36
7524 12542 1.301677 GAAAGCAAGACTCTGGCCGG 61.302 60.000 4.71 4.71 28.98 6.13
7572 12590 3.186119 ACACAAAATGAAAAGTGTGCCG 58.814 40.909 2.69 0.00 44.14 5.69
7575 12593 2.422276 AAATGAAAAGTGTGCCGAGC 57.578 45.000 0.00 0.00 0.00 5.03
7585 12603 1.153745 GTGCCGAGCTACCAGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
7629 12682 8.945195 ATATTGATCCATCATTGGTTGTATGT 57.055 30.769 0.00 0.00 44.06 2.29
7730 13965 9.443323 TCTCTAGATATACTTAGATGCACTGAC 57.557 37.037 0.00 0.00 0.00 3.51
7731 13966 9.448438 CTCTAGATATACTTAGATGCACTGACT 57.552 37.037 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 254 6.160684 TCCGTCGATGAGATCTTTAAAACAA 58.839 36.000 6.11 0.00 0.00 2.83
109 270 4.814771 GGGAGTATTTGAATTTCCGTCGAT 59.185 41.667 0.00 0.00 0.00 3.59
110 271 4.081309 AGGGAGTATTTGAATTTCCGTCGA 60.081 41.667 0.00 0.00 0.00 4.20
113 274 5.186198 CAGAGGGAGTATTTGAATTTCCGT 58.814 41.667 0.00 3.39 0.00 4.69
115 276 6.659242 TGAACAGAGGGAGTATTTGAATTTCC 59.341 38.462 0.00 0.00 0.00 3.13
117 278 7.234355 AGTGAACAGAGGGAGTATTTGAATTT 58.766 34.615 0.00 0.00 0.00 1.82
118 279 6.784031 AGTGAACAGAGGGAGTATTTGAATT 58.216 36.000 0.00 0.00 0.00 2.17
120 281 5.825593 AGTGAACAGAGGGAGTATTTGAA 57.174 39.130 0.00 0.00 0.00 2.69
121 282 5.825593 AAGTGAACAGAGGGAGTATTTGA 57.174 39.130 0.00 0.00 0.00 2.69
122 283 6.884280 AAAAGTGAACAGAGGGAGTATTTG 57.116 37.500 0.00 0.00 0.00 2.32
124 285 9.892130 CTTATAAAAGTGAACAGAGGGAGTATT 57.108 33.333 0.00 0.00 0.00 1.89
126 287 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
127 288 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
129 290 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
132 293 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
133 294 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
134 295 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
135 296 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
137 298 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
138 299 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
144 305 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
145 306 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
146 307 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
147 308 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
148 309 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
149 310 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
150 311 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
151 312 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
153 314 5.628193 GCACATTGTCTGAAATGTCTTCAAG 59.372 40.000 12.25 5.42 45.47 3.02
154 315 5.067544 TGCACATTGTCTGAAATGTCTTCAA 59.932 36.000 12.25 0.00 45.47 2.69
155 316 4.579753 TGCACATTGTCTGAAATGTCTTCA 59.420 37.500 12.25 9.40 45.47 3.02
157 318 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
158 319 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
161 322 5.557514 GCTGTTTTGCACATTGTCTGAAATG 60.558 40.000 0.00 9.50 42.21 2.32
162 323 4.508861 GCTGTTTTGCACATTGTCTGAAAT 59.491 37.500 0.00 0.00 33.76 2.17
163 324 3.864583 GCTGTTTTGCACATTGTCTGAAA 59.135 39.130 0.00 0.00 33.76 2.69
165 326 2.223782 GGCTGTTTTGCACATTGTCTGA 60.224 45.455 0.00 0.00 33.76 3.27
166 327 2.129607 GGCTGTTTTGCACATTGTCTG 58.870 47.619 0.00 0.00 33.76 3.51
167 328 2.034124 AGGCTGTTTTGCACATTGTCT 58.966 42.857 0.00 0.00 33.76 3.41
168 329 2.514205 AGGCTGTTTTGCACATTGTC 57.486 45.000 0.00 0.00 33.76 3.18
169 330 4.605640 AATAGGCTGTTTTGCACATTGT 57.394 36.364 0.00 0.00 33.76 2.71
170 331 5.466058 TCAAAATAGGCTGTTTTGCACATTG 59.534 36.000 32.24 16.60 43.04 2.82
171 332 5.609423 TCAAAATAGGCTGTTTTGCACATT 58.391 33.333 32.24 6.77 43.04 2.71
172 333 5.212532 TCAAAATAGGCTGTTTTGCACAT 57.787 34.783 32.24 7.40 43.04 3.21
173 334 4.099266 ACTCAAAATAGGCTGTTTTGCACA 59.901 37.500 32.24 20.43 43.04 4.57
174 335 4.620982 ACTCAAAATAGGCTGTTTTGCAC 58.379 39.130 32.24 0.00 43.04 4.57
175 336 4.935352 ACTCAAAATAGGCTGTTTTGCA 57.065 36.364 32.24 23.09 43.04 4.08
176 337 5.049828 ACAACTCAAAATAGGCTGTTTTGC 58.950 37.500 32.24 0.00 43.04 3.68
177 338 6.418819 CAGACAACTCAAAATAGGCTGTTTTG 59.581 38.462 31.63 31.63 44.10 2.44
178 339 6.321181 TCAGACAACTCAAAATAGGCTGTTTT 59.679 34.615 15.20 15.20 0.00 2.43
179 340 5.827797 TCAGACAACTCAAAATAGGCTGTTT 59.172 36.000 3.12 3.12 0.00 2.83
180 341 5.376625 TCAGACAACTCAAAATAGGCTGTT 58.623 37.500 0.00 0.00 0.00 3.16
181 342 4.973168 TCAGACAACTCAAAATAGGCTGT 58.027 39.130 0.00 0.00 0.00 4.40
182 343 5.947228 TTCAGACAACTCAAAATAGGCTG 57.053 39.130 0.00 0.00 0.00 4.85
183 344 5.049405 CGTTTCAGACAACTCAAAATAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
184 345 5.049680 TCGTTTCAGACAACTCAAAATAGGC 60.050 40.000 0.00 0.00 0.00 3.93
185 346 6.202954 AGTCGTTTCAGACAACTCAAAATAGG 59.797 38.462 0.00 0.00 43.24 2.57
186 347 7.178712 AGTCGTTTCAGACAACTCAAAATAG 57.821 36.000 0.00 0.00 43.24 1.73
187 348 7.548196 AAGTCGTTTCAGACAACTCAAAATA 57.452 32.000 0.00 0.00 43.24 1.40
188 349 6.436843 AAGTCGTTTCAGACAACTCAAAAT 57.563 33.333 0.00 0.00 43.24 1.82
189 350 5.873179 AAGTCGTTTCAGACAACTCAAAA 57.127 34.783 0.00 0.00 43.24 2.44
190 351 5.870433 TGTAAGTCGTTTCAGACAACTCAAA 59.130 36.000 0.00 0.00 43.24 2.69
191 352 5.412640 TGTAAGTCGTTTCAGACAACTCAA 58.587 37.500 0.00 0.00 43.24 3.02
192 353 5.001237 TGTAAGTCGTTTCAGACAACTCA 57.999 39.130 0.00 0.00 43.24 3.41
193 354 5.961395 TTGTAAGTCGTTTCAGACAACTC 57.039 39.130 0.00 0.00 43.24 3.01
194 355 6.370718 ACTTTTGTAAGTCGTTTCAGACAACT 59.629 34.615 0.00 0.00 40.60 3.16
195 356 6.464834 CACTTTTGTAAGTCGTTTCAGACAAC 59.535 38.462 0.00 0.00 42.67 3.32
196 357 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
197 358 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
198 359 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
199 360 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
200 361 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
201 362 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
202 363 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
203 364 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
204 365 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
205 366 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
206 367 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
207 368 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
208 369 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
209 370 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
210 371 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
211 372 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
212 373 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
213 374 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
214 375 3.326880 ACATACTCCCTCCGTTCACTTTT 59.673 43.478 0.00 0.00 0.00 2.27
215 376 2.904434 ACATACTCCCTCCGTTCACTTT 59.096 45.455 0.00 0.00 0.00 2.66
216 377 2.537143 ACATACTCCCTCCGTTCACTT 58.463 47.619 0.00 0.00 0.00 3.16
217 378 2.233305 ACATACTCCCTCCGTTCACT 57.767 50.000 0.00 0.00 0.00 3.41
218 379 3.194116 TGTTACATACTCCCTCCGTTCAC 59.806 47.826 0.00 0.00 0.00 3.18
219 380 3.433343 TGTTACATACTCCCTCCGTTCA 58.567 45.455 0.00 0.00 0.00 3.18
220 381 4.667519 ATGTTACATACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
221 382 4.468510 TCAATGTTACATACTCCCTCCGTT 59.531 41.667 0.00 0.00 0.00 4.44
222 383 4.028131 TCAATGTTACATACTCCCTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
223 384 4.665833 TCAATGTTACATACTCCCTCCG 57.334 45.455 0.00 0.00 0.00 4.63
224 385 5.741011 TGTTCAATGTTACATACTCCCTCC 58.259 41.667 0.00 0.00 0.00 4.30
225 386 7.865706 AATGTTCAATGTTACATACTCCCTC 57.134 36.000 0.00 0.00 34.04 4.30
226 387 8.650143 AAAATGTTCAATGTTACATACTCCCT 57.350 30.769 0.00 0.00 34.04 4.20
280 449 6.149633 CGTGGAAAAGCTAGCACTTTATTTT 58.850 36.000 18.83 13.21 38.92 1.82
301 470 0.249868 TGCTCTCAAACCACTCCGTG 60.250 55.000 0.00 0.00 0.00 4.94
424 601 9.581289 TTGTGTTCTATTCATTCCCTAAGAAAA 57.419 29.630 0.00 0.00 38.21 2.29
426 603 7.333423 CGTTGTGTTCTATTCATTCCCTAAGAA 59.667 37.037 0.00 0.00 39.32 2.52
427 604 6.816640 CGTTGTGTTCTATTCATTCCCTAAGA 59.183 38.462 0.00 0.00 0.00 2.10
428 605 6.816640 TCGTTGTGTTCTATTCATTCCCTAAG 59.183 38.462 0.00 0.00 0.00 2.18
429 606 6.703319 TCGTTGTGTTCTATTCATTCCCTAA 58.297 36.000 0.00 0.00 0.00 2.69
430 607 6.288941 TCGTTGTGTTCTATTCATTCCCTA 57.711 37.500 0.00 0.00 0.00 3.53
432 609 6.436843 AATCGTTGTGTTCTATTCATTCCC 57.563 37.500 0.00 0.00 0.00 3.97
433 610 7.305474 ACAAATCGTTGTGTTCTATTCATTCC 58.695 34.615 0.00 0.00 46.40 3.01
451 2310 6.640499 TCTTTTGTGCATAAAGGAACAAATCG 59.360 34.615 16.58 3.07 40.93 3.34
470 2329 2.693797 AGATGCGTGTTGCTCTTTTG 57.306 45.000 0.00 0.00 46.63 2.44
496 2355 7.276438 GCTAAACAAATCCAACATCCATTCTTC 59.724 37.037 0.00 0.00 0.00 2.87
506 2365 5.333492 CGTCTAACGCTAAACAAATCCAACA 60.333 40.000 0.00 0.00 33.65 3.33
508 2367 5.272167 CGTCTAACGCTAAACAAATCCAA 57.728 39.130 0.00 0.00 33.65 3.53
597 2465 4.311606 TGTATAGTTGCTTTCGAACTGCA 58.688 39.130 17.67 17.67 35.30 4.41
600 2468 7.544622 TGTCTATGTATAGTTGCTTTCGAACT 58.455 34.615 0.00 0.00 37.43 3.01
609 2477 7.495934 ACATGAACCTTGTCTATGTATAGTTGC 59.504 37.037 0.00 0.00 30.79 4.17
617 2520 5.721960 AGGTCTACATGAACCTTGTCTATGT 59.278 40.000 0.00 0.00 36.15 2.29
625 2528 4.406003 AGCGATTAGGTCTACATGAACCTT 59.594 41.667 19.30 7.30 34.06 3.50
660 2564 1.207089 TCCAGTTACAGCTCATTCGGG 59.793 52.381 0.00 0.00 0.00 5.14
662 2566 3.238108 ACTCCAGTTACAGCTCATTCG 57.762 47.619 0.00 0.00 0.00 3.34
666 2570 1.201647 GCGTACTCCAGTTACAGCTCA 59.798 52.381 0.00 0.00 0.00 4.26
735 2651 1.363744 GTGCACACAGCTGAGGTATC 58.636 55.000 23.35 12.82 45.94 2.24
776 2700 2.985896 TGGTAAAAGATGCTTCTCGGG 58.014 47.619 2.09 0.00 0.00 5.14
777 2701 3.246226 CGATGGTAAAAGATGCTTCTCGG 59.754 47.826 2.09 0.00 0.00 4.63
778 2702 3.246226 CCGATGGTAAAAGATGCTTCTCG 59.754 47.826 2.09 0.22 0.00 4.04
779 2703 4.442706 TCCGATGGTAAAAGATGCTTCTC 58.557 43.478 2.09 0.00 0.00 2.87
780 2704 4.487714 TCCGATGGTAAAAGATGCTTCT 57.512 40.909 0.00 0.00 0.00 2.85
781 2705 5.560966 TTTCCGATGGTAAAAGATGCTTC 57.439 39.130 0.00 0.00 0.00 3.86
782 2706 5.067805 GGATTTCCGATGGTAAAAGATGCTT 59.932 40.000 0.00 0.00 0.00 3.91
783 2707 4.580580 GGATTTCCGATGGTAAAAGATGCT 59.419 41.667 0.00 0.00 0.00 3.79
907 2844 3.319198 GGCCGTGGAGGTGGAGAA 61.319 66.667 0.00 0.00 43.70 2.87
1150 3088 0.726452 GCGCGGAGATCGTAGATGAC 60.726 60.000 8.83 0.00 45.12 3.06
1265 3206 3.637273 GGCCGGTGAGAGGGTTGT 61.637 66.667 1.90 0.00 0.00 3.32
1507 3466 4.135153 CCTGCCCGTCTCCGAGTG 62.135 72.222 0.00 0.00 35.63 3.51
1530 3489 3.479269 GCGAACGCCTCTTGGTCG 61.479 66.667 8.03 0.00 38.30 4.79
1733 3692 4.778143 GCCGGTACCTGCCCACTG 62.778 72.222 16.93 0.00 0.00 3.66
1753 3712 1.823169 TAACACTCGCTGACCCCCAC 61.823 60.000 0.00 0.00 0.00 4.61
1901 3860 2.514824 GGGACAAGGAGCATCGGC 60.515 66.667 0.00 0.00 41.61 5.54
1903 3862 0.598680 GATCGGGACAAGGAGCATCG 60.599 60.000 0.00 0.00 34.37 3.84
1904 3863 0.598680 CGATCGGGACAAGGAGCATC 60.599 60.000 7.38 0.00 0.00 3.91
1905 3864 1.443407 CGATCGGGACAAGGAGCAT 59.557 57.895 7.38 0.00 0.00 3.79
1906 3865 2.721167 CCGATCGGGACAAGGAGCA 61.721 63.158 26.95 0.00 38.47 4.26
1907 3866 2.107141 CCGATCGGGACAAGGAGC 59.893 66.667 26.95 0.00 38.47 4.70
1908 3867 1.736586 CTCCGATCGGGACAAGGAG 59.263 63.158 32.79 17.47 40.94 3.69
1909 3868 2.423898 GCTCCGATCGGGACAAGGA 61.424 63.158 32.79 11.72 40.94 3.36
1910 3869 2.107141 GCTCCGATCGGGACAAGG 59.893 66.667 32.79 16.51 40.94 3.61
1911 3870 2.107141 GGCTCCGATCGGGACAAG 59.893 66.667 32.79 23.08 40.94 3.16
1920 4016 1.379977 TCTCTGTTCCGGCTCCGAT 60.380 57.895 10.28 0.00 42.83 4.18
1924 4020 2.182030 CCGTCTCTGTTCCGGCTC 59.818 66.667 0.00 0.00 34.62 4.70
1930 4026 1.142778 GCTCGATGCCGTCTCTGTTC 61.143 60.000 0.00 0.00 37.05 3.18
1931 4027 1.153745 GCTCGATGCCGTCTCTGTT 60.154 57.895 0.00 0.00 37.05 3.16
1932 4028 2.492090 GCTCGATGCCGTCTCTGT 59.508 61.111 0.00 0.00 37.05 3.41
1934 4030 3.893763 CCGCTCGATGCCGTCTCT 61.894 66.667 0.00 0.00 38.78 3.10
1937 4033 4.933064 CTCCCGCTCGATGCCGTC 62.933 72.222 0.00 0.00 38.78 4.79
1943 4039 3.082579 GCTCAACCTCCCGCTCGAT 62.083 63.158 0.00 0.00 0.00 3.59
1944 4040 3.760035 GCTCAACCTCCCGCTCGA 61.760 66.667 0.00 0.00 0.00 4.04
1948 4044 2.125350 CTCTGCTCAACCTCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
1954 4050 2.669569 TTGCGGCTCTGCTCAACC 60.670 61.111 0.00 0.00 35.36 3.77
1955 4051 1.633852 CTCTTGCGGCTCTGCTCAAC 61.634 60.000 0.00 0.00 35.36 3.18
1956 4052 1.375140 CTCTTGCGGCTCTGCTCAA 60.375 57.895 0.00 0.00 35.36 3.02
1957 4053 2.223200 CTCTCTTGCGGCTCTGCTCA 62.223 60.000 0.00 0.00 35.36 4.26
1968 4064 4.168291 CCTCCCGGCCTCTCTTGC 62.168 72.222 0.00 0.00 0.00 4.01
1970 4066 1.687493 CTTCCTCCCGGCCTCTCTT 60.687 63.158 0.00 0.00 0.00 2.85
1971 4067 2.042435 CTTCCTCCCGGCCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
1972 4068 3.855853 GCTTCCTCCCGGCCTCTC 61.856 72.222 0.00 0.00 0.00 3.20
1983 4079 4.711949 CACTGCTGCGGGCTTCCT 62.712 66.667 13.87 0.00 42.39 3.36
1992 4088 3.054503 CTGGGACTGCACTGCTGC 61.055 66.667 7.76 0.00 44.52 5.25
1994 4090 4.341783 GCCTGGGACTGCACTGCT 62.342 66.667 1.98 0.00 0.00 4.24
1999 4692 4.007644 CACGAGCCTGGGACTGCA 62.008 66.667 0.00 0.00 0.00 4.41
2037 4730 3.134623 TCAAGCTTCTGACACTCTCCAAA 59.865 43.478 0.00 0.00 0.00 3.28
2829 5522 5.422214 ACTGAAAGAAGATTACGGGTCAT 57.578 39.130 0.00 0.00 37.43 3.06
3624 6318 8.603242 AGTCTTCATGTTTAAAACACGAGTAT 57.397 30.769 0.00 0.00 45.50 2.12
3744 6438 5.357257 TCTTAGAACGAAACTCAAGCTTGT 58.643 37.500 25.19 6.68 0.00 3.16
4077 6771 1.696063 GATGCCATGCAACATAGGGT 58.304 50.000 0.00 0.00 43.62 4.34
4393 7087 2.943978 CGAAGAAGGCCGACCCACT 61.944 63.158 0.00 0.00 36.11 4.00
4452 7146 1.007734 GACGTTGACGAGTCAGCCA 60.008 57.895 10.87 0.00 41.13 4.75
4830 7524 0.248458 AAAACCGCGAGCAACAAGTG 60.248 50.000 8.23 0.00 0.00 3.16
5358 8052 1.689813 TCTGCGTAAGGACAAGACCAA 59.310 47.619 0.00 0.00 38.28 3.67
5514 8208 2.229792 GAAGTCCACCAACAATGCTCA 58.770 47.619 0.00 0.00 0.00 4.26
5723 8417 1.289160 TCTGAGCTACCAGCCCAATT 58.711 50.000 0.00 0.00 43.77 2.32
5738 8432 0.461548 GTGGATCGCCTGTCATCTGA 59.538 55.000 0.00 0.00 34.31 3.27
5820 8514 2.619646 TCAGTACTGCTACGTGACACAA 59.380 45.455 18.45 0.00 0.00 3.33
6592 9286 0.108424 CCTCTGTCCAGAAAGCTCCG 60.108 60.000 0.00 0.00 36.94 4.63
6662 9366 1.141881 CGATTACCTGCGGCAGAGT 59.858 57.895 30.52 25.40 32.44 3.24
6722 9426 3.311167 TGGGTGCATTGCATAATAGGT 57.689 42.857 15.49 0.00 41.91 3.08
6725 9429 8.592529 AATGTATATGGGTGCATTGCATAATA 57.407 30.769 15.49 12.74 41.91 0.98
6728 9432 6.914654 AAATGTATATGGGTGCATTGCATA 57.085 33.333 15.49 3.30 41.91 3.14
6729 9433 5.811796 AAATGTATATGGGTGCATTGCAT 57.188 34.783 15.49 0.78 41.91 3.96
6730 9434 5.595952 TGTAAATGTATATGGGTGCATTGCA 59.404 36.000 7.38 7.38 35.13 4.08
6731 9435 6.083098 TGTAAATGTATATGGGTGCATTGC 57.917 37.500 0.46 0.46 35.13 3.56
6732 9436 7.595875 CACATGTAAATGTATATGGGTGCATTG 59.404 37.037 0.00 0.00 35.13 2.82
6733 9437 7.660112 CACATGTAAATGTATATGGGTGCATT 58.340 34.615 0.00 0.00 36.21 3.56
6736 9440 5.460646 GCACATGTAAATGTATATGGGTGC 58.539 41.667 0.00 0.00 35.30 5.01
6737 9441 5.769662 AGGCACATGTAAATGTATATGGGTG 59.230 40.000 0.00 0.00 35.30 4.61
6738 9442 5.952387 AGGCACATGTAAATGTATATGGGT 58.048 37.500 0.00 0.00 35.30 4.51
6739 9443 7.394016 TCTAGGCACATGTAAATGTATATGGG 58.606 38.462 0.00 1.38 35.80 4.00
6740 9444 8.886719 CATCTAGGCACATGTAAATGTATATGG 58.113 37.037 0.00 0.00 34.12 2.74
6741 9445 8.393366 GCATCTAGGCACATGTAAATGTATATG 58.607 37.037 0.00 0.00 35.52 1.78
6743 9447 7.449247 TGCATCTAGGCACATGTAAATGTATA 58.551 34.615 0.00 0.00 39.25 1.47
6759 9476 7.338800 ACAACTTAATGGAAATGCATCTAGG 57.661 36.000 0.00 0.00 0.00 3.02
6760 9477 9.643693 AAAACAACTTAATGGAAATGCATCTAG 57.356 29.630 0.00 0.00 0.00 2.43
6762 9479 7.095102 GCAAAACAACTTAATGGAAATGCATCT 60.095 33.333 0.00 0.00 0.00 2.90
6764 9481 6.485984 TGCAAAACAACTTAATGGAAATGCAT 59.514 30.769 0.00 0.00 34.36 3.96
6771 9488 6.214191 TGACTTGCAAAACAACTTAATGGA 57.786 33.333 0.00 0.00 33.68 3.41
6773 9490 6.636447 TCGATGACTTGCAAAACAACTTAATG 59.364 34.615 0.00 0.00 33.68 1.90
6774 9491 6.734137 TCGATGACTTGCAAAACAACTTAAT 58.266 32.000 0.00 0.00 33.68 1.40
6775 9492 6.125327 TCGATGACTTGCAAAACAACTTAA 57.875 33.333 0.00 0.00 33.68 1.85
6777 9494 4.630894 TCGATGACTTGCAAAACAACTT 57.369 36.364 0.00 0.00 33.68 2.66
6778 9495 4.630894 TTCGATGACTTGCAAAACAACT 57.369 36.364 0.00 0.00 33.68 3.16
6779 9496 5.458452 TCAATTCGATGACTTGCAAAACAAC 59.542 36.000 0.00 1.92 33.68 3.32
6780 9497 5.586339 TCAATTCGATGACTTGCAAAACAA 58.414 33.333 0.00 0.00 36.62 2.83
6782 9499 5.858049 TGATCAATTCGATGACTTGCAAAAC 59.142 36.000 0.00 0.00 33.17 2.43
6783 9500 6.011476 TGATCAATTCGATGACTTGCAAAA 57.989 33.333 0.00 0.00 33.17 2.44
6784 9501 5.181811 ACTGATCAATTCGATGACTTGCAAA 59.818 36.000 0.00 0.00 33.17 3.68
6792 9509 3.934579 CCACACACTGATCAATTCGATGA 59.065 43.478 0.00 0.00 33.17 2.92
6793 9510 3.934579 TCCACACACTGATCAATTCGATG 59.065 43.478 0.00 0.00 33.17 3.84
6795 9512 3.676291 TCCACACACTGATCAATTCGA 57.324 42.857 0.00 0.00 0.00 3.71
6797 9514 5.615544 CGAGTTTCCACACACTGATCAATTC 60.616 44.000 0.00 0.00 0.00 2.17
6798 9515 4.214119 CGAGTTTCCACACACTGATCAATT 59.786 41.667 0.00 0.00 0.00 2.32
6799 9516 3.748048 CGAGTTTCCACACACTGATCAAT 59.252 43.478 0.00 0.00 0.00 2.57
6800 9517 3.130633 CGAGTTTCCACACACTGATCAA 58.869 45.455 0.00 0.00 0.00 2.57
6801 9518 2.547855 CCGAGTTTCCACACACTGATCA 60.548 50.000 0.00 0.00 0.00 2.92
6802 9519 2.069273 CCGAGTTTCCACACACTGATC 58.931 52.381 0.00 0.00 0.00 2.92
6803 9520 1.691976 TCCGAGTTTCCACACACTGAT 59.308 47.619 0.00 0.00 0.00 2.90
6805 9522 1.217882 GTCCGAGTTTCCACACACTG 58.782 55.000 0.00 0.00 0.00 3.66
6806 9523 0.828022 TGTCCGAGTTTCCACACACT 59.172 50.000 0.00 0.00 0.00 3.55
6807 9524 1.658994 TTGTCCGAGTTTCCACACAC 58.341 50.000 0.00 0.00 0.00 3.82
6808 9525 2.285083 CTTTGTCCGAGTTTCCACACA 58.715 47.619 0.00 0.00 0.00 3.72
6810 9527 2.093394 TGACTTTGTCCGAGTTTCCACA 60.093 45.455 0.00 0.00 0.00 4.17
6811 9528 2.557317 TGACTTTGTCCGAGTTTCCAC 58.443 47.619 0.00 0.00 0.00 4.02
6812 9529 2.992124 TGACTTTGTCCGAGTTTCCA 57.008 45.000 0.00 0.00 0.00 3.53
6815 9532 3.771577 AGGATGACTTTGTCCGAGTTT 57.228 42.857 0.00 0.00 39.54 2.66
6816 9533 5.422214 AATAGGATGACTTTGTCCGAGTT 57.578 39.130 0.00 0.00 39.54 3.01
6817 9534 5.422214 AAATAGGATGACTTTGTCCGAGT 57.578 39.130 0.00 0.00 39.54 4.18
6818 9535 9.712305 AATATAAATAGGATGACTTTGTCCGAG 57.288 33.333 0.00 0.00 39.54 4.63
6842 9559 7.093945 CCCAGTAGTGCTAATTGTTTGGTTAAT 60.094 37.037 0.00 0.00 0.00 1.40
6844 9561 5.708230 CCCAGTAGTGCTAATTGTTTGGTTA 59.292 40.000 0.00 0.00 0.00 2.85
6845 9562 4.522789 CCCAGTAGTGCTAATTGTTTGGTT 59.477 41.667 0.00 0.00 0.00 3.67
6846 9563 4.079253 CCCAGTAGTGCTAATTGTTTGGT 58.921 43.478 0.00 0.00 0.00 3.67
6847 9564 3.119495 GCCCAGTAGTGCTAATTGTTTGG 60.119 47.826 0.00 0.00 0.00 3.28
6852 9569 2.092968 TCTGGCCCAGTAGTGCTAATTG 60.093 50.000 11.27 0.00 32.61 2.32
6855 9572 0.902531 GTCTGGCCCAGTAGTGCTAA 59.097 55.000 11.27 0.00 32.61 3.09
6856 9573 0.252057 TGTCTGGCCCAGTAGTGCTA 60.252 55.000 11.27 0.00 32.61 3.49
6857 9574 0.911525 ATGTCTGGCCCAGTAGTGCT 60.912 55.000 11.27 0.00 32.61 4.40
6858 9575 0.830648 TATGTCTGGCCCAGTAGTGC 59.169 55.000 11.27 0.00 32.61 4.40
6859 9576 3.627395 TTTATGTCTGGCCCAGTAGTG 57.373 47.619 11.27 0.00 32.61 2.74
6860 9577 4.862641 ATTTTATGTCTGGCCCAGTAGT 57.137 40.909 11.27 0.26 32.61 2.73
6861 9578 4.202050 GCAATTTTATGTCTGGCCCAGTAG 60.202 45.833 11.27 0.00 32.61 2.57
6862 9579 3.699038 GCAATTTTATGTCTGGCCCAGTA 59.301 43.478 11.27 1.53 32.61 2.74
6864 9581 2.762327 AGCAATTTTATGTCTGGCCCAG 59.238 45.455 3.69 3.69 0.00 4.45
6866 9583 3.026694 AGAGCAATTTTATGTCTGGCCC 58.973 45.455 0.00 0.00 0.00 5.80
6867 9584 3.950395 AGAGAGCAATTTTATGTCTGGCC 59.050 43.478 0.00 0.00 0.00 5.36
6868 9585 4.880696 AGAGAGAGCAATTTTATGTCTGGC 59.119 41.667 0.00 0.00 0.00 4.85
6869 9586 5.220815 GCAGAGAGAGCAATTTTATGTCTGG 60.221 44.000 9.27 0.00 31.51 3.86
6870 9587 5.353400 TGCAGAGAGAGCAATTTTATGTCTG 59.647 40.000 4.86 4.86 39.39 3.51
6872 9589 5.808042 TGCAGAGAGAGCAATTTTATGTC 57.192 39.130 0.00 0.00 39.39 3.06
6882 9599 1.233019 GCTTGTTTGCAGAGAGAGCA 58.767 50.000 6.37 0.00 40.85 4.26
6883 9600 0.520847 GGCTTGTTTGCAGAGAGAGC 59.479 55.000 0.00 0.00 34.04 4.09
6884 9601 1.888215 TGGCTTGTTTGCAGAGAGAG 58.112 50.000 0.00 0.00 34.04 3.20
6885 9602 2.346766 TTGGCTTGTTTGCAGAGAGA 57.653 45.000 0.00 0.00 34.04 3.10
6886 9603 3.441496 TTTTGGCTTGTTTGCAGAGAG 57.559 42.857 0.00 0.00 34.04 3.20
6887 9604 3.883830 TTTTTGGCTTGTTTGCAGAGA 57.116 38.095 0.00 0.00 34.04 3.10
6889 9606 3.870419 GTCATTTTTGGCTTGTTTGCAGA 59.130 39.130 0.00 0.00 34.04 4.26
6893 9610 4.035441 CCCAAGTCATTTTTGGCTTGTTTG 59.965 41.667 16.48 4.47 46.66 2.93
6894 9611 4.080638 TCCCAAGTCATTTTTGGCTTGTTT 60.081 37.500 16.48 0.00 46.66 2.83
6895 9612 3.454082 TCCCAAGTCATTTTTGGCTTGTT 59.546 39.130 16.48 0.00 46.66 2.83
6896 9613 3.037549 TCCCAAGTCATTTTTGGCTTGT 58.962 40.909 16.48 0.00 46.66 3.16
6898 9615 2.035832 CGTCCCAAGTCATTTTTGGCTT 59.964 45.455 0.00 0.00 43.00 4.35
6899 9616 1.613437 CGTCCCAAGTCATTTTTGGCT 59.387 47.619 0.00 0.00 43.00 4.75
6901 9618 4.519540 ATTCGTCCCAAGTCATTTTTGG 57.480 40.909 0.00 0.00 43.77 3.28
6902 9619 4.923281 GGAATTCGTCCCAAGTCATTTTTG 59.077 41.667 0.00 0.00 41.10 2.44
6903 9620 5.134202 GGAATTCGTCCCAAGTCATTTTT 57.866 39.130 0.00 0.00 41.10 1.94
6904 9621 4.783764 GGAATTCGTCCCAAGTCATTTT 57.216 40.909 0.00 0.00 41.10 1.82
6916 9633 5.057149 AGGCATTGTATGTAGGAATTCGTC 58.943 41.667 3.47 0.00 0.00 4.20
6917 9634 5.036117 AGGCATTGTATGTAGGAATTCGT 57.964 39.130 5.87 5.87 0.00 3.85
6918 9635 6.366332 GTCTAGGCATTGTATGTAGGAATTCG 59.634 42.308 0.00 0.00 0.00 3.34
6919 9636 7.217200 TGTCTAGGCATTGTATGTAGGAATTC 58.783 38.462 0.00 0.00 0.00 2.17
6920 9637 7.136822 TGTCTAGGCATTGTATGTAGGAATT 57.863 36.000 0.00 0.00 0.00 2.17
6921 9638 6.747414 TGTCTAGGCATTGTATGTAGGAAT 57.253 37.500 0.00 0.00 0.00 3.01
6923 9640 7.124298 GGATATGTCTAGGCATTGTATGTAGGA 59.876 40.741 16.36 0.00 0.00 2.94
6924 9641 7.124901 AGGATATGTCTAGGCATTGTATGTAGG 59.875 40.741 16.36 0.00 0.00 3.18
6925 9642 7.978414 CAGGATATGTCTAGGCATTGTATGTAG 59.022 40.741 16.36 0.00 0.00 2.74
6926 9643 7.579531 GCAGGATATGTCTAGGCATTGTATGTA 60.580 40.741 16.36 0.00 0.00 2.29
6927 9644 6.705302 CAGGATATGTCTAGGCATTGTATGT 58.295 40.000 16.36 0.00 0.00 2.29
6928 9645 5.583854 GCAGGATATGTCTAGGCATTGTATG 59.416 44.000 16.36 10.88 0.00 2.39
6929 9646 5.249163 TGCAGGATATGTCTAGGCATTGTAT 59.751 40.000 16.36 2.63 0.00 2.29
6930 9647 4.592778 TGCAGGATATGTCTAGGCATTGTA 59.407 41.667 16.36 4.24 0.00 2.41
6931 9648 3.392285 TGCAGGATATGTCTAGGCATTGT 59.608 43.478 16.36 4.83 0.00 2.71
6932 9649 3.750130 GTGCAGGATATGTCTAGGCATTG 59.250 47.826 16.36 8.74 31.29 2.82
6933 9650 3.649981 AGTGCAGGATATGTCTAGGCATT 59.350 43.478 16.36 3.41 31.29 3.56
6934 9651 3.246301 AGTGCAGGATATGTCTAGGCAT 58.754 45.455 15.39 15.39 31.29 4.40
6935 9652 2.682594 AGTGCAGGATATGTCTAGGCA 58.317 47.619 0.00 0.00 0.00 4.75
6936 9653 3.760580 AAGTGCAGGATATGTCTAGGC 57.239 47.619 0.00 0.00 0.00 3.93
6938 9655 8.458052 CAGAGTATAAGTGCAGGATATGTCTAG 58.542 40.741 0.00 0.00 0.00 2.43
6939 9656 7.094162 GCAGAGTATAAGTGCAGGATATGTCTA 60.094 40.741 0.00 0.00 37.16 2.59
6940 9657 6.295011 GCAGAGTATAAGTGCAGGATATGTCT 60.295 42.308 0.00 0.00 37.16 3.41
6941 9658 5.866633 GCAGAGTATAAGTGCAGGATATGTC 59.133 44.000 0.00 0.00 37.16 3.06
6942 9659 5.305386 TGCAGAGTATAAGTGCAGGATATGT 59.695 40.000 0.00 0.00 42.20 2.29
6943 9660 5.787380 TGCAGAGTATAAGTGCAGGATATG 58.213 41.667 0.00 0.00 42.20 1.78
6950 9667 5.071653 TCCCATATTGCAGAGTATAAGTGCA 59.928 40.000 1.70 1.70 45.30 4.57
6951 9668 5.551233 TCCCATATTGCAGAGTATAAGTGC 58.449 41.667 0.00 0.00 37.73 4.40
6952 9669 6.763355 ACTCCCATATTGCAGAGTATAAGTG 58.237 40.000 2.44 0.00 37.81 3.16
6953 9670 8.492415 TTACTCCCATATTGCAGAGTATAAGT 57.508 34.615 10.88 4.00 40.51 2.24
6954 9671 8.807118 TCTTACTCCCATATTGCAGAGTATAAG 58.193 37.037 10.88 8.95 40.51 1.73
6955 9672 8.721133 TCTTACTCCCATATTGCAGAGTATAA 57.279 34.615 10.88 0.98 40.51 0.98
6957 9674 7.805083 ATCTTACTCCCATATTGCAGAGTAT 57.195 36.000 10.88 0.00 40.51 2.12
6958 9675 7.728532 TGTATCTTACTCCCATATTGCAGAGTA 59.271 37.037 7.05 7.05 40.07 2.59
6959 9676 6.554982 TGTATCTTACTCCCATATTGCAGAGT 59.445 38.462 8.81 8.81 42.13 3.24
6961 9678 6.554982 AGTGTATCTTACTCCCATATTGCAGA 59.445 38.462 0.00 0.00 0.00 4.26
6962 9679 6.648310 CAGTGTATCTTACTCCCATATTGCAG 59.352 42.308 0.00 0.00 0.00 4.41
6971 11559 3.906720 TTGGCAGTGTATCTTACTCCC 57.093 47.619 0.00 0.00 0.00 4.30
7091 11689 4.157656 CCAGAAGTTTCAGGTTGACAACAA 59.842 41.667 19.58 3.23 0.00 2.83
7196 11802 4.559153 ACAACTTAATGGAAATGCACAGC 58.441 39.130 0.00 0.00 0.00 4.40
7327 11956 2.981784 TGCCTAGCCCAATAGTGATGAT 59.018 45.455 0.00 0.00 0.00 2.45
7329 11958 2.936919 TGCCTAGCCCAATAGTGATG 57.063 50.000 0.00 0.00 0.00 3.07
7331 11960 5.381184 TTTTATGCCTAGCCCAATAGTGA 57.619 39.130 0.00 0.00 0.00 3.41
7343 11972 8.066789 TGCTTACAGAGAGCAATTTTATGCCTA 61.067 37.037 0.00 0.00 46.35 3.93
7363 11992 6.877322 TCCCAAGTTATTACTGTCTTGCTTAC 59.123 38.462 0.00 0.00 36.82 2.34
7487 12466 2.260869 CCGTGTTGTCCTTGCCTGG 61.261 63.158 0.00 0.00 0.00 4.45
7496 12514 1.940613 AGTCTTGCTTTCCGTGTTGTC 59.059 47.619 0.00 0.00 0.00 3.18
7497 12515 1.940613 GAGTCTTGCTTTCCGTGTTGT 59.059 47.619 0.00 0.00 0.00 3.32
7498 12516 2.032549 CAGAGTCTTGCTTTCCGTGTTG 60.033 50.000 0.00 0.00 0.00 3.33
7499 12517 2.213499 CAGAGTCTTGCTTTCCGTGTT 58.787 47.619 0.00 0.00 0.00 3.32
7500 12518 1.541233 CCAGAGTCTTGCTTTCCGTGT 60.541 52.381 0.00 0.00 0.00 4.49
7501 12519 1.151668 CCAGAGTCTTGCTTTCCGTG 58.848 55.000 0.00 0.00 0.00 4.94
7502 12520 0.603975 GCCAGAGTCTTGCTTTCCGT 60.604 55.000 8.92 0.00 0.00 4.69
7503 12521 1.301677 GGCCAGAGTCTTGCTTTCCG 61.302 60.000 15.24 0.00 0.00 4.30
7504 12522 1.301677 CGGCCAGAGTCTTGCTTTCC 61.302 60.000 15.24 0.00 0.00 3.13
7505 12523 1.301677 CCGGCCAGAGTCTTGCTTTC 61.302 60.000 15.24 0.00 0.00 2.62
7506 12524 1.302832 CCGGCCAGAGTCTTGCTTT 60.303 57.895 15.24 0.00 0.00 3.51
7507 12525 2.348998 CCGGCCAGAGTCTTGCTT 59.651 61.111 15.24 0.00 0.00 3.91
7508 12526 2.925170 ACCGGCCAGAGTCTTGCT 60.925 61.111 15.24 0.00 0.00 3.91
7509 12527 2.743928 CACCGGCCAGAGTCTTGC 60.744 66.667 7.68 7.68 0.00 4.01
7510 12528 0.951040 GAACACCGGCCAGAGTCTTG 60.951 60.000 0.00 0.00 0.00 3.02
7511 12529 1.122019 AGAACACCGGCCAGAGTCTT 61.122 55.000 0.00 0.00 0.00 3.01
7512 12530 0.251653 TAGAACACCGGCCAGAGTCT 60.252 55.000 0.00 0.50 0.00 3.24
7513 12531 0.173708 CTAGAACACCGGCCAGAGTC 59.826 60.000 0.00 0.00 0.00 3.36
7514 12532 0.542232 ACTAGAACACCGGCCAGAGT 60.542 55.000 0.00 0.00 0.00 3.24
7515 12533 0.608640 AACTAGAACACCGGCCAGAG 59.391 55.000 0.00 0.00 0.00 3.35
7516 12534 0.606604 GAACTAGAACACCGGCCAGA 59.393 55.000 0.00 0.00 0.00 3.86
7517 12535 0.736325 CGAACTAGAACACCGGCCAG 60.736 60.000 0.00 0.00 0.00 4.85
7522 12540 3.278367 TCTGAACGAACTAGAACACCG 57.722 47.619 0.00 0.00 0.00 4.94
7524 12542 6.523893 GTGTCTATCTGAACGAACTAGAACAC 59.476 42.308 0.00 0.00 0.00 3.32
7572 12590 4.561735 GAGATACACTGACTGGTAGCTC 57.438 50.000 0.00 0.00 43.21 4.09
7575 12593 3.634448 CCCAGAGATACACTGACTGGTAG 59.366 52.174 0.00 0.00 44.33 3.18
7730 13965 5.238214 GGATTGCTGGCTAGATTAGTTCAAG 59.762 44.000 0.00 0.00 0.00 3.02
7731 13966 5.104360 AGGATTGCTGGCTAGATTAGTTCAA 60.104 40.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.