Multiple sequence alignment - TraesCS1A01G292900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G292900 chr1A 100.000 4450 0 0 1 4450 488207246 488202797 0.000000e+00 8218.0
1 TraesCS1A01G292900 chr1A 86.367 2626 248 49 1317 3887 488196340 488198910 0.000000e+00 2765.0
2 TraesCS1A01G292900 chr1A 87.237 807 67 12 1 802 488195119 488195894 0.000000e+00 887.0
3 TraesCS1A01G292900 chr1A 93.056 216 9 4 797 1010 488195926 488196137 1.200000e-80 311.0
4 TraesCS1A01G292900 chr1A 86.458 192 20 4 1084 1275 488196154 488196339 5.830000e-49 206.0
5 TraesCS1A01G292900 chr1A 89.130 92 9 1 4002 4093 488198997 488199087 3.640000e-21 113.0
6 TraesCS1A01G292900 chr1B 91.988 3420 182 32 1084 4448 522834333 522830951 0.000000e+00 4713.0
7 TraesCS1A01G292900 chr1B 85.063 1272 149 19 1941 3175 522769926 522771193 0.000000e+00 1258.0
8 TraesCS1A01G292900 chr1B 92.488 852 59 1 1084 1930 522767928 522768779 0.000000e+00 1214.0
9 TraesCS1A01G292900 chr1B 83.613 714 73 22 3190 3887 522829371 522830056 8.120000e-177 630.0
10 TraesCS1A01G292900 chr1B 85.132 491 40 15 303 783 522766897 522767364 5.210000e-129 472.0
11 TraesCS1A01G292900 chr1B 85.714 308 34 7 1 306 522764609 522764908 2.580000e-82 316.0
12 TraesCS1A01G292900 chr1B 89.954 219 13 4 797 1015 522767708 522767917 1.580000e-69 274.0
13 TraesCS1A01G292900 chr1B 92.523 107 7 1 4345 4450 522835126 522835020 7.710000e-33 152.0
14 TraesCS1A01G292900 chr1B 81.081 185 29 2 1072 1256 17610117 17610295 4.640000e-30 143.0
15 TraesCS1A01G292900 chr1B 90.426 94 8 1 4000 4093 522830136 522830228 6.040000e-24 122.0
16 TraesCS1A01G292900 chr1D 93.326 2832 132 26 1084 3907 389344447 389347229 0.000000e+00 4130.0
17 TraesCS1A01G292900 chr1D 90.068 2517 212 18 1065 3558 389806541 389809042 0.000000e+00 3229.0
18 TraesCS1A01G292900 chr1D 92.532 1888 105 17 2028 3907 389865415 389863556 0.000000e+00 2673.0
19 TraesCS1A01G292900 chr1D 87.493 1711 178 19 1874 3561 389355953 389354256 0.000000e+00 1941.0
20 TraesCS1A01G292900 chr1D 92.316 885 37 11 1117 2001 389866267 389865414 0.000000e+00 1229.0
21 TraesCS1A01G292900 chr1D 91.632 717 46 4 1084 1792 389356649 389355939 0.000000e+00 979.0
22 TraesCS1A01G292900 chr1D 90.424 637 50 9 1 631 389805582 389806213 0.000000e+00 828.0
23 TraesCS1A01G292900 chr1D 83.807 457 67 3 1040 1496 11757334 11757783 1.140000e-115 427.0
24 TraesCS1A01G292900 chr1D 90.868 219 15 4 797 1015 389356873 389356660 5.630000e-74 289.0
25 TraesCS1A01G292900 chr1D 93.939 165 7 2 799 963 389806336 389806497 3.440000e-61 246.0
26 TraesCS1A01G292900 chr1D 89.005 191 20 1 4261 4450 389343769 389343959 7.440000e-58 235.0
27 TraesCS1A01G292900 chr1D 96.341 82 0 3 3918 3997 389347214 389347294 1.000000e-26 132.0
28 TraesCS1A01G292900 chr1D 93.902 82 2 3 3918 3997 389863571 389863491 2.170000e-23 121.0
29 TraesCS1A01G292900 chr1D 89.247 93 4 2 716 802 389806211 389806303 1.310000e-20 111.0
30 TraesCS1A01G292900 chr3A 88.875 2355 230 18 1117 3451 730769443 730767101 0.000000e+00 2868.0
31 TraesCS1A01G292900 chr3A 96.721 61 2 0 727 787 730769894 730769834 7.870000e-18 102.0
32 TraesCS1A01G292900 chr6A 87.963 324 32 5 229 547 223567960 223568281 4.200000e-100 375.0
33 TraesCS1A01G292900 chr3B 85.926 270 32 6 281 547 8071915 8072181 2.620000e-72 283.0
34 TraesCS1A01G292900 chr3B 94.340 53 1 1 228 278 8071235 8071287 3.690000e-11 80.5
35 TraesCS1A01G292900 chr3D 81.928 332 46 12 228 547 431225828 431225499 7.340000e-68 268.0
36 TraesCS1A01G292900 chr3D 92.216 167 11 1 228 392 6675409 6675575 7.440000e-58 235.0
37 TraesCS1A01G292900 chr5A 88.119 101 8 2 229 325 138428028 138427928 2.810000e-22 117.0
38 TraesCS1A01G292900 chr5B 93.651 63 4 0 293 355 20028697 20028635 1.320000e-15 95.3
39 TraesCS1A01G292900 chr2D 97.143 35 1 0 11 45 314825021 314825055 4.810000e-05 60.2
40 TraesCS1A01G292900 chr7A 100.000 29 0 0 1015 1043 83029299 83029271 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G292900 chr1A 488202797 488207246 4449 True 8218.000000 8218 100.000000 1 4450 1 chr1A.!!$R1 4449
1 TraesCS1A01G292900 chr1A 488195119 488199087 3968 False 856.400000 2765 88.449600 1 4093 5 chr1A.!!$F1 4092
2 TraesCS1A01G292900 chr1B 522830951 522835126 4175 True 2432.500000 4713 92.255500 1084 4450 2 chr1B.!!$R1 3366
3 TraesCS1A01G292900 chr1B 522764609 522771193 6584 False 706.800000 1258 87.670200 1 3175 5 chr1B.!!$F2 3174
4 TraesCS1A01G292900 chr1B 522829371 522830228 857 False 376.000000 630 87.019500 3190 4093 2 chr1B.!!$F3 903
5 TraesCS1A01G292900 chr1D 389343769 389347294 3525 False 1499.000000 4130 92.890667 1084 4450 3 chr1D.!!$F2 3366
6 TraesCS1A01G292900 chr1D 389863491 389866267 2776 True 1341.000000 2673 92.916667 1117 3997 3 chr1D.!!$R2 2880
7 TraesCS1A01G292900 chr1D 389805582 389809042 3460 False 1103.500000 3229 90.919500 1 3558 4 chr1D.!!$F3 3557
8 TraesCS1A01G292900 chr1D 389354256 389356873 2617 True 1069.666667 1941 89.997667 797 3561 3 chr1D.!!$R1 2764
9 TraesCS1A01G292900 chr3A 730767101 730769894 2793 True 1485.000000 2868 92.798000 727 3451 2 chr3A.!!$R1 2724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 2486 0.178975 TTCGGAATTGCACCCAAGGT 60.179 50.0 0.00 0.0 35.62 3.50 F
1074 3413 0.251634 CTCCTCTTGGCTCCACCTTC 59.748 60.0 0.00 0.0 40.22 3.46 F
2706 6324 0.106519 CGGGGGCCTTTCAGATTCAT 60.107 55.0 0.84 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 4336 0.179006 TGTACATGGCCAAGTGTGCA 60.179 50.0 23.54 22.61 38.36 4.57 R
2842 6477 0.579156 GCTTCTCGTTCATGATCGGC 59.421 55.0 22.39 15.20 0.00 5.54 R
4022 7794 0.588252 CAGTTGTTTGGCTCCACTCG 59.412 55.0 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.947938 GATCCACCACGGCTCCATGG 62.948 65.000 4.97 4.97 42.13 3.66
89 90 1.098050 GACAAGGGCAAATCAGCGAT 58.902 50.000 0.00 0.00 34.64 4.58
111 112 2.029623 CCATTGATGGGAGGCAGAAAG 58.970 52.381 1.92 0.00 44.31 2.62
142 143 1.290134 GTTCCATTGGGAGGAGAGGT 58.710 55.000 2.09 0.00 46.01 3.85
143 144 1.210722 GTTCCATTGGGAGGAGAGGTC 59.789 57.143 2.09 0.00 46.01 3.85
157 158 3.070302 GGAGAGGTCTGTGTTCTCTGTTT 59.930 47.826 0.00 0.00 37.92 2.83
327 2321 2.815478 GTCCCAAGACTCAGATAAGCG 58.185 52.381 0.00 0.00 40.10 4.68
390 2384 6.438425 AGATTTGCTTCCCTACAACAATGAAT 59.562 34.615 0.00 0.00 0.00 2.57
420 2414 1.202359 GCTTGAAAACTCCAACGCCAA 60.202 47.619 0.00 0.00 0.00 4.52
432 2426 0.326264 AACGCCAAGAGAGGAGCATT 59.674 50.000 0.00 0.00 30.84 3.56
441 2435 5.065731 CCAAGAGAGGAGCATTTGTAATGAC 59.934 44.000 3.70 0.00 0.00 3.06
446 2440 2.017049 GAGCATTTGTAATGACCGGCT 58.983 47.619 0.00 0.00 0.00 5.52
447 2441 1.745087 AGCATTTGTAATGACCGGCTG 59.255 47.619 0.00 0.00 0.00 4.85
448 2442 1.472480 GCATTTGTAATGACCGGCTGT 59.528 47.619 0.00 0.00 0.00 4.40
449 2443 2.477863 GCATTTGTAATGACCGGCTGTC 60.478 50.000 0.00 1.70 44.72 3.51
483 2479 1.064060 CCTTCGGATTCGGAATTGCAC 59.936 52.381 4.47 0.00 36.95 4.57
490 2486 0.178975 TTCGGAATTGCACCCAAGGT 60.179 50.000 0.00 0.00 35.62 3.50
528 2529 6.745907 CGATTCGATGACAACTTTAGTGTAGA 59.254 38.462 0.00 0.00 0.00 2.59
623 2625 6.610075 ACATATCCTGCATTTGGTTTCTTT 57.390 33.333 0.00 0.00 0.00 2.52
641 2643 5.618056 TCTTTCACACATGCTCAGATTTC 57.382 39.130 0.00 0.00 0.00 2.17
648 2650 4.202398 ACACATGCTCAGATTTCCGGATAT 60.202 41.667 4.15 5.89 0.00 1.63
664 2666 3.057104 CGGATATGCTGGTTCGGTGTATA 60.057 47.826 0.00 0.00 0.00 1.47
665 2667 4.559906 CGGATATGCTGGTTCGGTGTATAA 60.560 45.833 0.00 0.00 0.00 0.98
666 2668 4.689345 GGATATGCTGGTTCGGTGTATAAC 59.311 45.833 0.00 0.00 0.00 1.89
667 2669 2.389962 TGCTGGTTCGGTGTATAACC 57.610 50.000 0.00 0.00 46.60 2.85
711 2713 9.712305 AACAGTCTACATGATTATATACAAGGC 57.288 33.333 0.00 0.00 0.00 4.35
712 2714 8.870116 ACAGTCTACATGATTATATACAAGGCA 58.130 33.333 0.00 0.00 0.00 4.75
838 3177 5.047235 AGCTTAACCACGGATGATATACCTC 60.047 44.000 0.00 0.00 0.00 3.85
839 3178 5.721232 CTTAACCACGGATGATATACCTCC 58.279 45.833 0.00 0.00 0.00 4.30
840 3179 3.254093 ACCACGGATGATATACCTCCA 57.746 47.619 0.00 0.00 33.77 3.86
844 3183 5.104277 ACCACGGATGATATACCTCCAAAAA 60.104 40.000 0.00 0.00 33.77 1.94
873 3212 9.256477 TCACGGATAGTATCAATTCAATAACAC 57.744 33.333 12.19 0.00 0.00 3.32
875 3214 8.208224 ACGGATAGTATCAATTCAATAACACCA 58.792 33.333 12.19 0.00 0.00 4.17
882 3221 7.599630 ATCAATTCAATAACACCATTGCAAC 57.400 32.000 0.00 0.00 36.13 4.17
883 3222 6.757237 TCAATTCAATAACACCATTGCAACT 58.243 32.000 0.00 0.00 36.13 3.16
884 3223 7.215789 TCAATTCAATAACACCATTGCAACTT 58.784 30.769 0.00 0.00 36.13 2.66
885 3224 7.714377 TCAATTCAATAACACCATTGCAACTTT 59.286 29.630 0.00 0.00 36.13 2.66
886 3225 8.344098 CAATTCAATAACACCATTGCAACTTTT 58.656 29.630 0.00 0.00 36.13 2.27
913 3252 9.562583 TTATTTACTTCCGTGTTTTAATGATGC 57.437 29.630 0.00 0.00 0.00 3.91
915 3254 7.908827 TTACTTCCGTGTTTTAATGATGCTA 57.091 32.000 0.00 0.00 0.00 3.49
917 3256 9.602568 TTACTTCCGTGTTTTAATGATGCTATA 57.397 29.630 0.00 0.00 0.00 1.31
919 3258 9.772973 ACTTCCGTGTTTTAATGATGCTATATA 57.227 29.630 0.00 0.00 0.00 0.86
923 3262 7.910162 CCGTGTTTTAATGATGCTATATATGGC 59.090 37.037 13.77 13.77 34.56 4.40
958 3297 3.519908 TTTTGAATCAAGAGCGACGTG 57.480 42.857 0.00 0.00 0.00 4.49
959 3298 1.428448 TTGAATCAAGAGCGACGTGG 58.572 50.000 0.00 0.00 0.00 4.94
962 3301 2.029739 TGAATCAAGAGCGACGTGGTTA 60.030 45.455 0.00 0.00 32.02 2.85
963 3302 2.961526 ATCAAGAGCGACGTGGTTAT 57.038 45.000 0.00 0.00 0.00 1.89
964 3303 2.736144 TCAAGAGCGACGTGGTTATT 57.264 45.000 0.00 0.00 0.00 1.40
965 3304 3.853831 TCAAGAGCGACGTGGTTATTA 57.146 42.857 0.00 0.00 0.00 0.98
966 3305 3.504863 TCAAGAGCGACGTGGTTATTAC 58.495 45.455 0.00 0.00 0.00 1.89
967 3306 2.573941 AGAGCGACGTGGTTATTACC 57.426 50.000 0.00 0.00 45.26 2.85
975 3314 2.968697 GGTTATTACCGCCGGCCG 60.969 66.667 23.46 21.04 34.01 6.13
986 3325 2.584143 CCGGCCGGACGACATTAC 60.584 66.667 41.82 0.00 37.50 1.89
987 3326 2.584143 CGGCCGGACGACATTACC 60.584 66.667 30.37 0.02 35.47 2.85
988 3327 2.202974 GGCCGGACGACATTACCC 60.203 66.667 5.05 0.00 0.00 3.69
991 3330 1.394266 GCCGGACGACATTACCCCTA 61.394 60.000 5.05 0.00 0.00 3.53
992 3331 0.386838 CCGGACGACATTACCCCTAC 59.613 60.000 0.00 0.00 0.00 3.18
993 3332 1.105457 CGGACGACATTACCCCTACA 58.895 55.000 0.00 0.00 0.00 2.74
995 3334 2.545113 CGGACGACATTACCCCTACATG 60.545 54.545 0.00 0.00 0.00 3.21
996 3335 2.433239 GGACGACATTACCCCTACATGT 59.567 50.000 2.69 2.69 33.72 3.21
997 3336 3.118519 GGACGACATTACCCCTACATGTT 60.119 47.826 2.30 0.00 31.10 2.71
998 3337 3.869065 ACGACATTACCCCTACATGTTG 58.131 45.455 2.30 0.84 38.03 3.33
999 3338 2.612212 CGACATTACCCCTACATGTTGC 59.388 50.000 2.30 0.00 31.10 4.17
1000 3339 2.949644 GACATTACCCCTACATGTTGCC 59.050 50.000 2.30 0.00 31.10 4.52
1001 3340 2.580783 ACATTACCCCTACATGTTGCCT 59.419 45.455 2.30 0.00 0.00 4.75
1002 3341 3.783642 ACATTACCCCTACATGTTGCCTA 59.216 43.478 2.30 0.00 0.00 3.93
1003 3342 4.415512 ACATTACCCCTACATGTTGCCTAT 59.584 41.667 2.30 0.00 0.00 2.57
1005 3344 6.274672 ACATTACCCCTACATGTTGCCTATAT 59.725 38.462 2.30 0.00 0.00 0.86
1006 3345 7.459763 ACATTACCCCTACATGTTGCCTATATA 59.540 37.037 2.30 0.00 0.00 0.86
1007 3346 7.875338 TTACCCCTACATGTTGCCTATATAA 57.125 36.000 2.30 0.00 0.00 0.98
1009 3348 5.186198 CCCCTACATGTTGCCTATATAAGC 58.814 45.833 2.30 0.00 0.00 3.09
1010 3349 5.186198 CCCTACATGTTGCCTATATAAGCC 58.814 45.833 2.30 0.00 0.00 4.35
1011 3350 5.280470 CCCTACATGTTGCCTATATAAGCCA 60.280 44.000 2.30 0.00 0.00 4.75
1012 3351 5.877012 CCTACATGTTGCCTATATAAGCCAG 59.123 44.000 2.30 0.00 0.00 4.85
1014 3353 3.140325 TGTTGCCTATATAAGCCAGCC 57.860 47.619 0.87 0.00 0.00 4.85
1015 3354 2.224769 TGTTGCCTATATAAGCCAGCCC 60.225 50.000 0.87 0.00 0.00 5.19
1016 3355 1.741028 TGCCTATATAAGCCAGCCCA 58.259 50.000 0.87 0.00 0.00 5.36
1017 3356 2.061848 TGCCTATATAAGCCAGCCCAA 58.938 47.619 0.87 0.00 0.00 4.12
1018 3357 2.649312 TGCCTATATAAGCCAGCCCAAT 59.351 45.455 0.87 0.00 0.00 3.16
1019 3358 3.849574 TGCCTATATAAGCCAGCCCAATA 59.150 43.478 0.87 0.00 0.00 1.90
1022 3361 5.532779 GCCTATATAAGCCAGCCCAATAATC 59.467 44.000 0.00 0.00 0.00 1.75
1023 3362 6.064717 CCTATATAAGCCAGCCCAATAATCC 58.935 44.000 0.00 0.00 0.00 3.01
1026 3365 2.959465 AGCCAGCCCAATAATCCTAC 57.041 50.000 0.00 0.00 0.00 3.18
1027 3366 2.135189 AGCCAGCCCAATAATCCTACA 58.865 47.619 0.00 0.00 0.00 2.74
1029 3368 3.084786 GCCAGCCCAATAATCCTACATC 58.915 50.000 0.00 0.00 0.00 3.06
1031 3370 4.019321 GCCAGCCCAATAATCCTACATCTA 60.019 45.833 0.00 0.00 0.00 1.98
1033 3372 5.171476 CAGCCCAATAATCCTACATCTACG 58.829 45.833 0.00 0.00 0.00 3.51
1034 3373 4.838986 AGCCCAATAATCCTACATCTACGT 59.161 41.667 0.00 0.00 0.00 3.57
1035 3374 6.014647 AGCCCAATAATCCTACATCTACGTA 58.985 40.000 0.00 0.00 0.00 3.57
1037 3376 7.015877 AGCCCAATAATCCTACATCTACGTAAA 59.984 37.037 0.00 0.00 0.00 2.01
1038 3377 7.117379 GCCCAATAATCCTACATCTACGTAAAC 59.883 40.741 0.00 0.00 0.00 2.01
1039 3378 8.145767 CCCAATAATCCTACATCTACGTAAACA 58.854 37.037 0.00 0.00 0.00 2.83
1040 3379 9.537192 CCAATAATCCTACATCTACGTAAACAA 57.463 33.333 0.00 0.00 0.00 2.83
1043 3382 5.002464 TCCTACATCTACGTAAACAAGCC 57.998 43.478 0.00 0.00 0.00 4.35
1044 3383 4.463539 TCCTACATCTACGTAAACAAGCCA 59.536 41.667 0.00 0.00 0.00 4.75
1045 3384 4.804139 CCTACATCTACGTAAACAAGCCAG 59.196 45.833 0.00 0.00 0.00 4.85
1046 3385 3.000727 ACATCTACGTAAACAAGCCAGC 58.999 45.455 0.00 0.00 0.00 4.85
1047 3386 2.088950 TCTACGTAAACAAGCCAGCC 57.911 50.000 0.00 0.00 0.00 4.85
1049 3388 1.732259 CTACGTAAACAAGCCAGCCTG 59.268 52.381 0.00 0.00 0.00 4.85
1051 3390 1.586541 GTAAACAAGCCAGCCTGCC 59.413 57.895 0.00 0.00 0.00 4.85
1052 3391 1.971167 TAAACAAGCCAGCCTGCCG 60.971 57.895 0.00 0.00 0.00 5.69
1070 3409 2.125350 CGCTCCTCTTGGCTCCAC 60.125 66.667 0.00 0.00 0.00 4.02
1071 3410 2.270527 GCTCCTCTTGGCTCCACC 59.729 66.667 0.00 0.00 39.84 4.61
1072 3411 2.297129 GCTCCTCTTGGCTCCACCT 61.297 63.158 0.00 0.00 40.22 4.00
1073 3412 1.846712 GCTCCTCTTGGCTCCACCTT 61.847 60.000 0.00 0.00 40.22 3.50
1074 3413 0.251634 CTCCTCTTGGCTCCACCTTC 59.748 60.000 0.00 0.00 40.22 3.46
1075 3414 1.078848 CCTCTTGGCTCCACCTTCG 60.079 63.158 0.00 0.00 40.22 3.79
1077 3416 2.177594 CTCTTGGCTCCACCTTCGCT 62.178 60.000 0.00 0.00 40.22 4.93
1079 3418 3.254024 TTGGCTCCACCTTCGCTCC 62.254 63.158 0.00 0.00 40.22 4.70
1081 3420 3.760035 GCTCCACCTTCGCTCCGA 61.760 66.667 0.00 0.00 0.00 4.55
1083 3422 1.066587 CTCCACCTTCGCTCCGATC 59.933 63.158 0.00 0.00 35.23 3.69
1084 3423 2.107141 CCACCTTCGCTCCGATCC 59.893 66.667 0.00 0.00 35.23 3.36
1085 3424 2.427245 CCACCTTCGCTCCGATCCT 61.427 63.158 0.00 0.00 35.23 3.24
1087 3426 2.333225 CCTTCGCTCCGATCCTCG 59.667 66.667 0.00 0.00 40.07 4.63
1152 3581 0.795085 GTAGCACTTGCACTCTGCTG 59.205 55.000 18.09 0.00 45.31 4.41
1160 3589 1.738099 GCACTCTGCTGGTGTACCG 60.738 63.158 11.71 0.00 40.96 4.02
1330 3785 4.111016 ATGGACGACGAAGCGCGA 62.111 61.111 12.10 0.00 44.57 5.87
1331 3786 4.753877 TGGACGACGAAGCGCGAG 62.754 66.667 12.10 0.00 44.57 5.03
1546 4006 1.985116 GGAGTTCCTCGGCCTGAGT 60.985 63.158 18.94 4.97 43.64 3.41
1597 4057 2.442236 ACGGCAAAGGGATCATCATT 57.558 45.000 0.00 0.00 0.00 2.57
1618 4078 1.144057 GGTGATCGACTCCGGCATT 59.856 57.895 0.00 0.00 36.24 3.56
1633 4093 2.586079 ATTGAGTCGCGCCATCCG 60.586 61.111 0.00 0.00 40.75 4.18
1834 4294 1.815003 CGCCAATGCCTCGTCATCA 60.815 57.895 0.00 0.00 0.00 3.07
2023 5619 1.751924 GGAGTACTGCTCGACAAGGAT 59.248 52.381 7.20 0.00 45.03 3.24
2250 5856 1.804326 CCAACTCGACCGCTTACCG 60.804 63.158 0.00 0.00 0.00 4.02
2378 5990 4.576053 CCCGCATCATCAAAAATCTCTACA 59.424 41.667 0.00 0.00 0.00 2.74
2395 6007 2.751436 AACAATGGCGCGGCTCAT 60.751 55.556 33.23 17.07 0.00 2.90
2706 6324 0.106519 CGGGGGCCTTTCAGATTCAT 60.107 55.000 0.84 0.00 0.00 2.57
2825 6460 1.899437 AATGACCACGGCCGATGAGT 61.899 55.000 35.90 22.21 0.00 3.41
2842 6477 1.157870 AGTTGGACAACGACGGCAAG 61.158 55.000 9.31 0.00 45.50 4.01
2863 6498 2.477825 CCGATCATGAACGAGAAGCAT 58.522 47.619 24.95 0.00 0.00 3.79
2942 6595 0.178958 CCCGGGGCTAGTCTATGACT 60.179 60.000 14.71 5.53 45.54 3.41
2979 6632 1.376166 CCGGGTACGTTTGCCATCA 60.376 57.895 0.00 0.00 38.78 3.07
2983 6636 2.094957 CGGGTACGTTTGCCATCATTTT 60.095 45.455 0.00 0.00 34.81 1.82
3127 6801 4.025401 GTGGTGCCGGCGAACAAG 62.025 66.667 23.90 0.00 0.00 3.16
3129 6803 2.975799 GGTGCCGGCGAACAAGAA 60.976 61.111 23.90 0.00 0.00 2.52
3135 6809 2.250939 CGGCGAACAAGAAGGTGCA 61.251 57.895 0.00 0.00 0.00 4.57
3350 7036 1.006102 CAAAGCCCACTCGTCGTCT 60.006 57.895 0.00 0.00 0.00 4.18
3460 7173 9.594478 TGCTTACACGATCAGAATAAAAGAATA 57.406 29.630 0.00 0.00 0.00 1.75
3650 7372 6.195060 GCAAACTGCACAAAAATGTCAAAATC 59.805 34.615 0.00 0.00 44.26 2.17
3651 7373 5.640218 ACTGCACAAAAATGTCAAAATCG 57.360 34.783 0.00 0.00 0.00 3.34
3653 7375 6.269315 ACTGCACAAAAATGTCAAAATCGTA 58.731 32.000 0.00 0.00 0.00 3.43
3832 7571 1.000607 TCGCTTACATCGCCCATCTAC 60.001 52.381 0.00 0.00 0.00 2.59
3852 7591 0.389817 GCAGCATGTCCGTACTGTCA 60.390 55.000 0.00 0.00 39.31 3.58
3871 7610 7.603651 ACTGTCATTAACTACGTGAGATTTCT 58.396 34.615 0.00 0.00 0.00 2.52
4022 7794 2.673368 CTGTTCTAAATCACGCAGTCCC 59.327 50.000 0.00 0.00 41.61 4.46
4056 7828 3.778265 ACAACTGTTTGGCCCTCAATAT 58.222 40.909 0.00 0.00 37.00 1.28
4093 7865 7.394359 AGCCATGTAATCACTACAATTGTTCTT 59.606 33.333 17.78 6.27 43.75 2.52
4169 7941 9.334947 TCATTGATTAAGGAAGCTAAAGATGAG 57.665 33.333 0.00 0.00 0.00 2.90
4254 8026 8.072567 GGATGATATTAGTGAAAACTGCACATC 58.927 37.037 0.00 0.00 38.70 3.06
4326 8098 4.408182 ACTGATACACAATACTCCCTGC 57.592 45.455 0.00 0.00 0.00 4.85
4424 8196 3.508793 GTGGAATGGCTATTGCATGCTAT 59.491 43.478 19.36 19.30 44.73 2.97
4430 8202 5.648178 TGGCTATTGCATGCTATAAATGG 57.352 39.130 20.33 12.71 41.91 3.16
4448 8220 1.271379 TGGCCTTCCGGAAAGAGAAAG 60.271 52.381 19.39 4.04 37.12 2.62
4449 8221 1.003233 GGCCTTCCGGAAAGAGAAAGA 59.997 52.381 19.39 0.00 37.12 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.544357 TGGTGGATCTCGACCCTTGT 60.544 55.000 8.65 0.00 43.12 3.16
93 94 1.772836 GCTTTCTGCCTCCCATCAAT 58.227 50.000 0.00 0.00 35.15 2.57
111 112 3.006677 TGGAACATGGGCCTAGGC 58.993 61.111 26.55 26.55 41.06 3.93
142 143 2.158813 GGGTGGAAACAGAGAACACAGA 60.159 50.000 0.00 0.00 44.46 3.41
143 144 2.158755 AGGGTGGAAACAGAGAACACAG 60.159 50.000 0.00 0.00 44.46 3.66
157 158 3.716353 ACACATGCATATCTTAGGGTGGA 59.284 43.478 0.00 0.00 0.00 4.02
327 2321 9.974750 GTCTAGCAAAACATTGTATTAGAGTTC 57.025 33.333 0.00 0.00 0.00 3.01
390 2384 7.302524 GTTGGAGTTTTCAAGCGTTGATTATA 58.697 34.615 2.09 0.00 39.84 0.98
420 2414 4.681781 CGGTCATTACAAATGCTCCTCTCT 60.682 45.833 9.93 0.00 0.00 3.10
446 2440 0.030501 AGGGATATTGGGTCGGGACA 60.031 55.000 0.75 0.00 0.00 4.02
447 2441 1.071857 GAAGGGATATTGGGTCGGGAC 59.928 57.143 0.00 0.00 0.00 4.46
448 2442 1.430992 GAAGGGATATTGGGTCGGGA 58.569 55.000 0.00 0.00 0.00 5.14
449 2443 0.034896 CGAAGGGATATTGGGTCGGG 59.965 60.000 0.00 0.00 0.00 5.14
483 2479 0.250513 GACAGTAGGAGCACCTTGGG 59.749 60.000 8.39 0.51 45.36 4.12
490 2486 0.738975 CGAATCGGACAGTAGGAGCA 59.261 55.000 0.00 0.00 0.00 4.26
528 2529 2.498167 GAATCCAGCGGCTAACATCAT 58.502 47.619 0.26 0.00 0.00 2.45
623 2625 2.349590 CGGAAATCTGAGCATGTGTGA 58.650 47.619 0.00 0.00 0.00 3.58
641 2643 0.880278 CACCGAACCAGCATATCCGG 60.880 60.000 0.00 0.00 42.30 5.14
648 2650 2.389962 GGTTATACACCGAACCAGCA 57.610 50.000 0.00 0.00 43.91 4.41
789 2791 1.073025 CCCCGCCATGCAGCTATTA 59.927 57.895 0.00 0.00 0.00 0.98
790 2792 2.072874 ATCCCCGCCATGCAGCTATT 62.073 55.000 0.00 0.00 0.00 1.73
791 2793 2.072874 AATCCCCGCCATGCAGCTAT 62.073 55.000 0.00 0.00 0.00 2.97
792 2794 2.283143 AAATCCCCGCCATGCAGCTA 62.283 55.000 0.00 0.00 0.00 3.32
793 2795 3.667217 AAATCCCCGCCATGCAGCT 62.667 57.895 0.00 0.00 0.00 4.24
794 2796 3.149648 AAATCCCCGCCATGCAGC 61.150 61.111 0.00 0.00 0.00 5.25
846 3185 9.996554 TGTTATTGAATTGATACTATCCGTGAT 57.003 29.630 0.00 0.00 0.00 3.06
847 3186 9.256477 GTGTTATTGAATTGATACTATCCGTGA 57.744 33.333 0.00 0.00 0.00 4.35
849 3188 8.208224 TGGTGTTATTGAATTGATACTATCCGT 58.792 33.333 0.00 0.00 0.00 4.69
854 3193 9.183368 TGCAATGGTGTTATTGAATTGATACTA 57.817 29.630 0.00 0.00 39.79 1.82
856 3195 8.594687 GTTGCAATGGTGTTATTGAATTGATAC 58.405 33.333 0.59 0.00 39.79 2.24
857 3196 8.530311 AGTTGCAATGGTGTTATTGAATTGATA 58.470 29.630 0.59 0.00 39.79 2.15
858 3197 7.388437 AGTTGCAATGGTGTTATTGAATTGAT 58.612 30.769 0.59 0.00 39.79 2.57
859 3198 6.757237 AGTTGCAATGGTGTTATTGAATTGA 58.243 32.000 0.59 0.00 39.79 2.57
860 3199 7.424227 AAGTTGCAATGGTGTTATTGAATTG 57.576 32.000 0.59 0.00 39.79 2.32
861 3200 8.449251 AAAAGTTGCAATGGTGTTATTGAATT 57.551 26.923 0.59 0.00 39.79 2.17
862 3201 8.449251 AAAAAGTTGCAATGGTGTTATTGAAT 57.551 26.923 0.59 0.00 39.79 2.57
863 3202 7.856145 AAAAAGTTGCAATGGTGTTATTGAA 57.144 28.000 0.59 0.00 39.79 2.69
896 3235 9.161629 CCATATATAGCATCATTAAAACACGGA 57.838 33.333 0.00 0.00 0.00 4.69
897 3236 7.910162 GCCATATATAGCATCATTAAAACACGG 59.090 37.037 0.00 0.00 0.00 4.94
937 3276 3.303725 CCACGTCGCTCTTGATTCAAAAA 60.304 43.478 0.01 0.00 0.00 1.94
938 3277 2.223144 CCACGTCGCTCTTGATTCAAAA 59.777 45.455 0.01 0.00 0.00 2.44
939 3278 1.798223 CCACGTCGCTCTTGATTCAAA 59.202 47.619 0.01 0.00 0.00 2.69
940 3279 1.270094 ACCACGTCGCTCTTGATTCAA 60.270 47.619 0.00 0.00 0.00 2.69
942 3281 1.429463 AACCACGTCGCTCTTGATTC 58.571 50.000 0.00 0.00 0.00 2.52
943 3282 2.736144 TAACCACGTCGCTCTTGATT 57.264 45.000 0.00 0.00 0.00 2.57
944 3283 2.961526 ATAACCACGTCGCTCTTGAT 57.038 45.000 0.00 0.00 0.00 2.57
945 3284 2.736144 AATAACCACGTCGCTCTTGA 57.264 45.000 0.00 0.00 0.00 3.02
946 3285 2.601763 GGTAATAACCACGTCGCTCTTG 59.398 50.000 0.00 0.00 45.98 3.02
947 3286 2.884827 GGTAATAACCACGTCGCTCTT 58.115 47.619 0.00 0.00 45.98 2.85
948 3287 2.573941 GGTAATAACCACGTCGCTCT 57.426 50.000 0.00 0.00 45.98 4.09
958 3297 2.968697 CGGCCGGCGGTAATAACC 60.969 66.667 28.82 17.57 42.95 2.85
959 3298 2.968697 CCGGCCGGCGGTAATAAC 60.969 66.667 34.96 9.28 0.00 1.89
968 3307 4.517815 TAATGTCGTCCGGCCGGC 62.518 66.667 39.89 30.64 34.68 6.13
969 3308 2.584143 GTAATGTCGTCCGGCCGG 60.584 66.667 39.13 39.13 0.00 6.13
970 3309 2.584143 GGTAATGTCGTCCGGCCG 60.584 66.667 21.04 21.04 0.00 6.13
971 3310 2.202974 GGGTAATGTCGTCCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
972 3311 1.394266 TAGGGGTAATGTCGTCCGGC 61.394 60.000 0.00 0.00 0.00 6.13
973 3312 0.386838 GTAGGGGTAATGTCGTCCGG 59.613 60.000 0.00 0.00 0.00 5.14
974 3313 1.105457 TGTAGGGGTAATGTCGTCCG 58.895 55.000 0.00 0.00 0.00 4.79
975 3314 2.433239 ACATGTAGGGGTAATGTCGTCC 59.567 50.000 0.00 0.00 28.38 4.79
976 3315 3.814005 ACATGTAGGGGTAATGTCGTC 57.186 47.619 0.00 0.00 28.38 4.20
977 3316 3.869065 CAACATGTAGGGGTAATGTCGT 58.131 45.455 0.00 0.00 33.48 4.34
978 3317 2.612212 GCAACATGTAGGGGTAATGTCG 59.388 50.000 0.00 0.00 33.48 4.35
980 3319 2.580783 AGGCAACATGTAGGGGTAATGT 59.419 45.455 0.00 0.00 36.10 2.71
981 3320 3.297134 AGGCAACATGTAGGGGTAATG 57.703 47.619 0.00 0.00 41.41 1.90
982 3321 6.970165 ATATAGGCAACATGTAGGGGTAAT 57.030 37.500 0.00 0.00 41.41 1.89
983 3322 7.528205 GCTTATATAGGCAACATGTAGGGGTAA 60.528 40.741 11.70 0.00 41.41 2.85
984 3323 6.070424 GCTTATATAGGCAACATGTAGGGGTA 60.070 42.308 11.70 0.00 41.41 3.69
986 3325 5.186198 GCTTATATAGGCAACATGTAGGGG 58.814 45.833 11.70 0.00 41.41 4.79
999 3338 6.064717 GGATTATTGGGCTGGCTTATATAGG 58.935 44.000 0.00 0.00 0.00 2.57
1000 3339 6.904626 AGGATTATTGGGCTGGCTTATATAG 58.095 40.000 0.00 0.00 0.00 1.31
1001 3340 6.908526 AGGATTATTGGGCTGGCTTATATA 57.091 37.500 0.00 0.00 0.00 0.86
1002 3341 5.803463 AGGATTATTGGGCTGGCTTATAT 57.197 39.130 0.00 0.00 0.00 0.86
1003 3342 5.550011 TGTAGGATTATTGGGCTGGCTTATA 59.450 40.000 0.00 0.00 0.00 0.98
1005 3344 3.719479 TGTAGGATTATTGGGCTGGCTTA 59.281 43.478 0.00 0.00 0.00 3.09
1006 3345 2.513738 TGTAGGATTATTGGGCTGGCTT 59.486 45.455 0.00 0.00 0.00 4.35
1007 3346 2.135189 TGTAGGATTATTGGGCTGGCT 58.865 47.619 0.00 0.00 0.00 4.75
1009 3348 4.647564 AGATGTAGGATTATTGGGCTGG 57.352 45.455 0.00 0.00 0.00 4.85
1010 3349 5.171476 CGTAGATGTAGGATTATTGGGCTG 58.829 45.833 0.00 0.00 0.00 4.85
1011 3350 4.838986 ACGTAGATGTAGGATTATTGGGCT 59.161 41.667 0.00 0.00 0.00 5.19
1012 3351 5.148651 ACGTAGATGTAGGATTATTGGGC 57.851 43.478 0.00 0.00 0.00 5.36
1014 3353 9.537192 TTGTTTACGTAGATGTAGGATTATTGG 57.463 33.333 0.00 0.00 0.00 3.16
1016 3355 9.257651 GCTTGTTTACGTAGATGTAGGATTATT 57.742 33.333 0.00 0.00 0.00 1.40
1017 3356 7.871463 GGCTTGTTTACGTAGATGTAGGATTAT 59.129 37.037 0.00 0.00 0.00 1.28
1018 3357 7.147863 TGGCTTGTTTACGTAGATGTAGGATTA 60.148 37.037 0.00 0.00 0.00 1.75
1019 3358 6.047231 GGCTTGTTTACGTAGATGTAGGATT 58.953 40.000 0.00 0.00 0.00 3.01
1022 3361 4.751060 TGGCTTGTTTACGTAGATGTAGG 58.249 43.478 0.00 0.00 0.00 3.18
1023 3362 4.267928 GCTGGCTTGTTTACGTAGATGTAG 59.732 45.833 0.00 0.00 0.00 2.74
1026 3365 2.351726 GGCTGGCTTGTTTACGTAGATG 59.648 50.000 0.00 0.00 0.00 2.90
1027 3366 2.236395 AGGCTGGCTTGTTTACGTAGAT 59.764 45.455 0.00 0.00 0.00 1.98
1029 3368 1.732259 CAGGCTGGCTTGTTTACGTAG 59.268 52.381 6.61 0.00 0.00 3.51
1031 3370 1.515521 GCAGGCTGGCTTGTTTACGT 61.516 55.000 17.64 0.00 0.00 3.57
1033 3372 1.586541 GGCAGGCTGGCTTGTTTAC 59.413 57.895 31.42 4.12 40.14 2.01
1034 3373 1.971167 CGGCAGGCTGGCTTGTTTA 60.971 57.895 34.08 0.00 41.25 2.01
1035 3374 3.297620 CGGCAGGCTGGCTTGTTT 61.298 61.111 34.08 0.00 41.25 2.83
1052 3391 4.087892 TGGAGCCAAGAGGAGCGC 62.088 66.667 0.00 0.00 36.89 5.92
1055 3394 0.251634 GAAGGTGGAGCCAAGAGGAG 59.748 60.000 0.00 0.00 40.61 3.69
1057 3396 1.078848 CGAAGGTGGAGCCAAGAGG 60.079 63.158 0.00 0.00 40.61 3.69
1058 3397 1.743252 GCGAAGGTGGAGCCAAGAG 60.743 63.158 0.00 0.00 40.61 2.85
1060 3399 1.743252 GAGCGAAGGTGGAGCCAAG 60.743 63.158 0.00 0.00 39.88 3.61
1064 3403 2.962697 GATCGGAGCGAAGGTGGAGC 62.963 65.000 0.00 0.00 39.99 4.70
1065 3404 1.066587 GATCGGAGCGAAGGTGGAG 59.933 63.158 0.00 0.00 39.99 3.86
1068 3407 1.066587 GAGGATCGGAGCGAAGGTG 59.933 63.158 0.00 0.00 39.99 4.00
1081 3420 2.532256 CGTCGACTACGCCGAGGAT 61.532 63.158 14.70 0.00 46.10 3.24
1152 3581 4.139234 GGAGGACGGCGGTACACC 62.139 72.222 13.24 8.41 30.13 4.16
1160 3589 2.363147 AGTGGAGAGGAGGACGGC 60.363 66.667 0.00 0.00 0.00 5.68
1195 3624 2.202837 GATGGGTCGCCGGTGTAC 60.203 66.667 16.01 11.59 0.00 2.90
1330 3785 2.363925 GACCGGTACCAGCCCTCT 60.364 66.667 7.34 0.00 0.00 3.69
1331 3786 3.468140 GGACCGGTACCAGCCCTC 61.468 72.222 7.34 0.00 0.00 4.30
1394 3849 2.166664 GGAAGATGGTCTTGTACGAGCT 59.833 50.000 5.12 0.00 36.73 4.09
1395 3850 2.094182 TGGAAGATGGTCTTGTACGAGC 60.094 50.000 5.12 0.00 36.73 5.03
1546 4006 2.047655 CACAAGCCGGCGTCCTTA 60.048 61.111 23.20 0.00 0.00 2.69
1597 4057 2.758327 CCGGAGTCGATCACCCCA 60.758 66.667 0.00 0.00 39.00 4.96
1618 4078 4.492160 GACGGATGGCGCGACTCA 62.492 66.667 15.80 6.60 0.00 3.41
1752 4212 1.521450 GGTCTCGTCGTCAGGGTTGA 61.521 60.000 0.00 0.00 0.00 3.18
1876 4336 0.179006 TGTACATGGCCAAGTGTGCA 60.179 50.000 23.54 22.61 38.36 4.57
2010 5606 1.511850 CACAACATCCTTGTCGAGCA 58.488 50.000 0.00 0.00 34.06 4.26
2102 5702 2.355444 TGTCGTTGTTGACAGTAGACGA 59.645 45.455 5.07 5.07 43.62 4.20
2229 5835 3.636313 TAAGCGGTCGAGTTGGGCG 62.636 63.158 0.00 0.00 0.00 6.13
2250 5856 2.762875 CGGGGTAGTGGAGGGGTC 60.763 72.222 0.00 0.00 0.00 4.46
2378 5990 2.751436 ATGAGCCGCGCCATTGTT 60.751 55.556 0.00 0.00 0.00 2.83
2395 6007 1.212751 CTGACCGATCAGCACGACA 59.787 57.895 0.00 0.00 45.83 4.35
2674 6292 2.360980 CCCCGGTCTGGACTCTCT 59.639 66.667 0.00 0.00 42.00 3.10
2706 6324 3.445687 CCATCGACGTCCCGGACA 61.446 66.667 17.87 0.00 32.09 4.02
2825 6460 2.539338 GCTTGCCGTCGTTGTCCAA 61.539 57.895 0.00 0.00 0.00 3.53
2842 6477 0.579156 GCTTCTCGTTCATGATCGGC 59.421 55.000 22.39 15.20 0.00 5.54
2917 6569 4.371417 ACTAGCCCCGGGTCGACA 62.371 66.667 21.85 0.00 0.00 4.35
2932 6585 4.017958 TCTCTGACCTCCAAGTCATAGACT 60.018 45.833 5.86 0.00 45.39 3.24
2942 6595 1.174783 GCGTAGTCTCTGACCTCCAA 58.825 55.000 0.00 0.00 32.18 3.53
2979 6632 3.004946 GCCTGGCCCTGGCAAAAT 61.005 61.111 25.30 0.00 45.75 1.82
2998 6651 1.922220 GTCGTCGTCGTCGTCATCG 60.922 63.158 11.41 4.14 38.33 3.84
2999 6652 1.922220 CGTCGTCGTCGTCGTCATC 60.922 63.158 12.51 1.74 41.73 2.92
3000 6653 2.095282 CGTCGTCGTCGTCGTCAT 59.905 61.111 12.51 0.00 41.73 3.06
3001 6654 3.029735 TCGTCGTCGTCGTCGTCA 61.030 61.111 18.44 1.12 45.27 4.35
3198 6884 1.749258 GAGAAATCCACCCCCACGC 60.749 63.158 0.00 0.00 0.00 5.34
3350 7036 2.279584 TTCCGCTCACGAACGCAA 60.280 55.556 0.00 0.00 43.93 4.85
3650 7372 4.315803 ACTGTTCATTCCCAAAGTCTACG 58.684 43.478 0.00 0.00 0.00 3.51
3651 7373 5.763204 TGAACTGTTCATTCCCAAAGTCTAC 59.237 40.000 18.69 0.00 34.08 2.59
3653 7375 4.792068 TGAACTGTTCATTCCCAAAGTCT 58.208 39.130 18.69 0.00 34.08 3.24
3708 7432 8.129840 GCCCAGAGATATAATGTACGTACATAG 58.870 40.741 34.77 17.96 45.55 2.23
3715 7454 7.436376 CACATATGCCCAGAGATATAATGTACG 59.564 40.741 1.58 0.00 0.00 3.67
3783 7522 2.230130 ATGGAGGCCGAATTTTGGAA 57.770 45.000 6.88 0.00 0.00 3.53
3832 7571 1.413767 GACAGTACGGACATGCTGCG 61.414 60.000 0.00 7.44 35.88 5.18
3852 7591 6.986817 CCCATCAGAAATCTCACGTAGTTAAT 59.013 38.462 0.00 0.00 41.61 1.40
3871 7610 2.265367 TGCAAACTCCTAGACCCATCA 58.735 47.619 0.00 0.00 0.00 3.07
4022 7794 0.588252 CAGTTGTTTGGCTCCACTCG 59.412 55.000 0.00 0.00 0.00 4.18
4093 7865 9.618890 AAAGAAATACTCATATAAGCAGAAGCA 57.381 29.630 0.00 0.00 45.49 3.91
4146 7918 9.167311 GTTCTCATCTTTAGCTTCCTTAATCAA 57.833 33.333 0.00 0.00 0.00 2.57
4169 7941 2.418368 TACCCATGGATGTGCAGTTC 57.582 50.000 15.22 0.00 0.00 3.01
4254 8026 4.310022 TTCAACTAACCCTTACCCATGG 57.690 45.455 4.14 4.14 0.00 3.66
4326 8098 1.202687 TCCCTAAGATGATTGCCAGCG 60.203 52.381 0.00 0.00 36.05 5.18
4399 8171 2.057137 TGCAATAGCCATTCCACTCC 57.943 50.000 0.00 0.00 41.13 3.85
4401 8173 1.684983 GCATGCAATAGCCATTCCACT 59.315 47.619 14.21 0.00 41.13 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.