Multiple sequence alignment - TraesCS1A01G292200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G292200 chr1A 100.000 7196 0 0 1 7196 487742649 487735454 0.000000e+00 13289
1 TraesCS1A01G292200 chr1A 94.624 279 15 0 2262 2540 427397516 427397794 3.990000e-117 433
2 TraesCS1A01G292200 chr1A 94.265 279 16 0 2262 2540 529312360 529312638 1.860000e-115 427
3 TraesCS1A01G292200 chr1A 87.023 262 29 5 1 258 463406663 463406923 2.540000e-74 291
4 TraesCS1A01G292200 chr1B 94.349 4760 170 34 563 5264 522061774 522057056 0.000000e+00 7208
5 TraesCS1A01G292200 chr1B 93.047 1697 67 15 5380 7036 522056875 522055190 0.000000e+00 2433
6 TraesCS1A01G292200 chr1D 93.710 4801 191 45 522 5264 388651763 388647016 0.000000e+00 7090
7 TraesCS1A01G292200 chr1D 91.649 1880 91 24 5358 7194 388647017 388645161 0.000000e+00 2542
8 TraesCS1A01G292200 chr1D 91.810 464 35 2 2078 2540 84009546 84010007 1.690000e-180 643
9 TraesCS1A01G292200 chr1D 84.337 249 37 2 1 247 448648319 448648567 7.210000e-60 243
10 TraesCS1A01G292200 chr1D 93.578 109 5 2 5259 5367 433922775 433922669 2.080000e-35 161
11 TraesCS1A01G292200 chr5D 93.948 694 36 3 1851 2540 54190774 54190083 0.000000e+00 1044
12 TraesCS1A01G292200 chr3A 88.369 748 69 12 954 1696 599860934 599861668 0.000000e+00 883
13 TraesCS1A01G292200 chr3A 93.333 300 18 1 1851 2150 433767772 433767475 6.630000e-120 442
14 TraesCS1A01G292200 chr3A 94.424 269 15 0 248 516 1768915 1769183 1.440000e-111 414
15 TraesCS1A01G292200 chr3A 76.715 481 91 15 5708 6180 599866331 599866798 1.550000e-61 248
16 TraesCS1A01G292200 chr3A 85.263 190 26 2 4831 5020 599864611 599864798 2.050000e-45 195
17 TraesCS1A01G292200 chr3D 86.430 759 61 23 954 1701 457018659 457019386 0.000000e+00 793
18 TraesCS1A01G292200 chr3D 85.849 212 29 1 1 211 448979047 448979258 2.610000e-54 224
19 TraesCS1A01G292200 chr3B 90.586 563 51 2 1140 1701 603601710 603602271 0.000000e+00 745
20 TraesCS1A01G292200 chr3B 93.015 272 19 0 250 521 777193410 777193139 1.450000e-106 398
21 TraesCS1A01G292200 chr3B 90.164 122 10 2 4617 4737 603605237 603605357 2.690000e-34 158
22 TraesCS1A01G292200 chr3B 89.600 125 10 3 5260 5383 177503875 177503753 9.670000e-34 156
23 TraesCS1A01G292200 chr7D 91.870 492 37 2 1842 2332 85520221 85520710 0.000000e+00 684
24 TraesCS1A01G292200 chr7D 92.060 466 32 4 2078 2540 628448028 628448491 0.000000e+00 651
25 TraesCS1A01G292200 chr7D 90.798 489 39 3 1851 2335 621938198 621937712 0.000000e+00 649
26 TraesCS1A01G292200 chr6D 92.181 486 35 2 1851 2335 65146045 65146528 0.000000e+00 684
27 TraesCS1A01G292200 chrUn 91.152 486 40 2 1851 2335 31511883 31511400 0.000000e+00 656
28 TraesCS1A01G292200 chrUn 93.208 265 18 0 252 516 191261964 191262228 2.430000e-104 390
29 TraesCS1A01G292200 chr2D 90.213 470 37 5 2078 2540 397139147 397138680 7.990000e-169 604
30 TraesCS1A01G292200 chr2D 83.721 344 54 2 1228 1570 161376696 161376354 2.500000e-84 324
31 TraesCS1A01G292200 chr2D 96.000 100 4 0 5260 5359 593274342 593274243 5.780000e-36 163
32 TraesCS1A01G292200 chr2D 93.578 109 5 2 5260 5366 468096842 468096950 2.080000e-35 161
33 TraesCS1A01G292200 chr2D 93.519 108 6 1 5254 5360 640827121 640827014 7.470000e-35 159
34 TraesCS1A01G292200 chr2A 95.298 319 11 3 1851 2168 353868850 353869165 3.000000e-138 503
35 TraesCS1A01G292200 chr2A 93.258 267 18 0 250 516 752551198 752550932 1.880000e-105 394
36 TraesCS1A01G292200 chr2A 82.849 344 57 2 1228 1570 172217643 172217301 2.520000e-79 307
37 TraesCS1A01G292200 chr6A 93.750 272 17 0 250 521 182322930 182323201 6.720000e-110 409
38 TraesCS1A01G292200 chr6A 92.910 268 19 0 249 516 221455962 221456229 2.430000e-104 390
39 TraesCS1A01G292200 chr7A 93.585 265 17 0 252 516 730026821 730026557 5.230000e-106 396
40 TraesCS1A01G292200 chr7A 93.519 108 6 1 5263 5369 222500970 222500863 7.470000e-35 159
41 TraesCS1A01G292200 chr5A 93.585 265 17 0 252 516 227534225 227533961 5.230000e-106 396
42 TraesCS1A01G292200 chr5A 93.208 265 18 0 252 516 227436241 227435977 2.430000e-104 390
43 TraesCS1A01G292200 chr5A 89.286 252 25 2 1 250 67971656 67971405 1.510000e-81 315
44 TraesCS1A01G292200 chr5B 85.836 353 46 4 1220 1570 647944189 647943839 8.820000e-99 372
45 TraesCS1A01G292200 chr5B 83.465 254 40 2 1 252 400765791 400766044 1.210000e-57 235
46 TraesCS1A01G292200 chr2B 83.430 344 55 2 1228 1570 217793154 217792812 1.160000e-82 318
47 TraesCS1A01G292200 chr2B 86.111 252 33 2 1 250 774845310 774845059 3.310000e-68 270
48 TraesCS1A01G292200 chr2B 94.286 105 6 0 5255 5359 440223871 440223767 2.080000e-35 161
49 TraesCS1A01G292200 chr2B 92.661 109 8 0 5255 5363 656333087 656332979 2.690000e-34 158
50 TraesCS1A01G292200 chr4D 87.109 256 31 2 1 254 324449557 324449302 9.130000e-74 289
51 TraesCS1A01G292200 chr6B 82.692 260 42 3 1 257 674976546 674976805 2.020000e-55 228
52 TraesCS1A01G292200 chr7B 83.673 245 35 5 11 252 483799525 483799767 7.260000e-55 226
53 TraesCS1A01G292200 chr7B 96.970 99 3 0 5261 5359 217312261 217312359 4.470000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G292200 chr1A 487735454 487742649 7195 True 13289.0 13289 100.0000 1 7196 1 chr1A.!!$R1 7195
1 TraesCS1A01G292200 chr1B 522055190 522061774 6584 True 4820.5 7208 93.6980 563 7036 2 chr1B.!!$R1 6473
2 TraesCS1A01G292200 chr1D 388645161 388651763 6602 True 4816.0 7090 92.6795 522 7194 2 chr1D.!!$R2 6672
3 TraesCS1A01G292200 chr5D 54190083 54190774 691 True 1044.0 1044 93.9480 1851 2540 1 chr5D.!!$R1 689
4 TraesCS1A01G292200 chr3A 599860934 599866798 5864 False 442.0 883 83.4490 954 6180 3 chr3A.!!$F2 5226
5 TraesCS1A01G292200 chr3D 457018659 457019386 727 False 793.0 793 86.4300 954 1701 1 chr3D.!!$F2 747
6 TraesCS1A01G292200 chr3B 603601710 603605357 3647 False 451.5 745 90.3750 1140 4737 2 chr3B.!!$F1 3597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.038892 CATGCACAAAGGACACTGCC 60.039 55.000 0.00 0.00 0.00 4.85 F
253 254 0.105039 GCGGTGGAGATGGTCTAAGG 59.895 60.000 0.00 0.00 0.00 2.69 F
525 526 0.620700 ACTCCCATTAGAACCGGGCT 60.621 55.000 6.32 5.20 40.05 5.19 F
552 553 0.757188 ATCTCGCCAGATTCCTCCGT 60.757 55.000 0.00 0.00 35.67 4.69 F
822 834 1.000646 ACAGGTCTCGTCCCTCTCC 60.001 63.158 0.00 0.00 0.00 3.71 F
826 838 1.316706 GGTCTCGTCCCTCTCCACTG 61.317 65.000 0.00 0.00 0.00 3.66 F
1747 1795 2.133742 CTGGTCGCTGCACTTTTGGG 62.134 60.000 0.00 0.00 0.00 4.12 F
2822 3782 2.240612 CTTGCCGTTGCCGTAGCTTC 62.241 60.000 0.00 0.00 40.80 3.86 F
3844 4994 1.004080 CACTGGACCAGTCTGCCTG 60.004 63.158 24.76 8.62 43.43 4.85 F
4479 6343 1.066002 CTTACAATTGCGGGATGCCTG 59.934 52.381 5.05 0.00 45.60 4.85 F
5277 7218 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1659 1.633774 TGGCGAAGAGGAAGTTCTCT 58.366 50.000 2.25 1.27 45.22 3.10 R
2239 2959 8.127327 GTCAACTAACAGCTACGTATAGATGAA 58.873 37.037 10.40 0.00 45.94 2.57 R
2508 3239 5.438117 CGAGCATAGATTTACAGCACATTG 58.562 41.667 0.00 0.00 0.00 2.82 R
2548 3279 8.859090 TGTTTCATAACAGGAAATCAACAAGAT 58.141 29.630 0.00 0.00 39.29 2.40 R
2795 3755 2.688364 GGCAACGGCAAGATATAAGC 57.312 50.000 0.00 0.00 43.71 3.09 R
2908 3868 7.822658 TGGTAATAAGATGTGTTGCCTAAAAC 58.177 34.615 0.00 0.00 34.69 2.43 R
3040 4014 1.859080 CAGCGTCGTATAAGGAAAGGC 59.141 52.381 0.00 0.00 0.00 4.35 R
4467 6331 1.971167 GTTCAACAGGCATCCCGCA 60.971 57.895 0.00 0.00 45.17 5.69 R
5343 7284 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53 R
5344 7285 0.831307 ATTGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62 R
7108 10127 0.108585 TTTTTGAGCTCGCCAGACCT 59.891 50.000 9.64 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.110442 AGGAGAGAAGATGACAGGCG 58.890 55.000 0.00 0.00 0.00 5.52
20 21 0.103937 GGAGAGAAGATGACAGGCGG 59.896 60.000 0.00 0.00 0.00 6.13
21 22 0.103937 GAGAGAAGATGACAGGCGGG 59.896 60.000 0.00 0.00 0.00 6.13
22 23 1.522580 GAGAAGATGACAGGCGGGC 60.523 63.158 0.00 0.00 0.00 6.13
23 24 2.514824 GAAGATGACAGGCGGGCC 60.515 66.667 0.18 0.18 0.00 5.80
24 25 3.329542 GAAGATGACAGGCGGGCCA 62.330 63.158 12.97 0.00 38.92 5.36
25 26 3.335356 AAGATGACAGGCGGGCCAG 62.335 63.158 12.97 0.00 38.92 4.85
26 27 4.864334 GATGACAGGCGGGCCAGG 62.864 72.222 12.97 6.16 38.92 4.45
36 37 4.365111 GGGCCAGGGTCACATGCA 62.365 66.667 4.39 0.00 0.00 3.96
37 38 3.064324 GGCCAGGGTCACATGCAC 61.064 66.667 0.00 0.00 0.00 4.57
38 39 2.282391 GCCAGGGTCACATGCACA 60.282 61.111 0.00 0.00 0.00 4.57
39 40 1.902918 GCCAGGGTCACATGCACAA 60.903 57.895 0.00 0.00 0.00 3.33
40 41 1.462731 GCCAGGGTCACATGCACAAA 61.463 55.000 0.00 0.00 0.00 2.83
41 42 0.599558 CCAGGGTCACATGCACAAAG 59.400 55.000 0.00 0.00 0.00 2.77
42 43 0.599558 CAGGGTCACATGCACAAAGG 59.400 55.000 0.00 0.00 0.00 3.11
43 44 0.478072 AGGGTCACATGCACAAAGGA 59.522 50.000 0.00 0.00 0.00 3.36
44 45 0.598065 GGGTCACATGCACAAAGGAC 59.402 55.000 0.00 0.00 0.00 3.85
45 46 1.317613 GGTCACATGCACAAAGGACA 58.682 50.000 0.00 0.00 0.00 4.02
46 47 1.001378 GGTCACATGCACAAAGGACAC 60.001 52.381 0.00 0.00 0.00 3.67
47 48 1.949525 GTCACATGCACAAAGGACACT 59.050 47.619 0.00 0.00 0.00 3.55
48 49 1.948834 TCACATGCACAAAGGACACTG 59.051 47.619 0.00 0.00 0.00 3.66
49 50 0.670162 ACATGCACAAAGGACACTGC 59.330 50.000 0.00 0.00 0.00 4.40
50 51 0.038892 CATGCACAAAGGACACTGCC 60.039 55.000 0.00 0.00 0.00 4.85
51 52 1.518056 ATGCACAAAGGACACTGCCG 61.518 55.000 0.00 0.00 0.00 5.69
52 53 2.908073 GCACAAAGGACACTGCCGG 61.908 63.158 0.00 0.00 0.00 6.13
53 54 1.227823 CACAAAGGACACTGCCGGA 60.228 57.895 5.05 0.00 0.00 5.14
54 55 1.227853 ACAAAGGACACTGCCGGAC 60.228 57.895 5.05 0.00 0.00 4.79
55 56 2.030562 AAAGGACACTGCCGGACG 59.969 61.111 5.05 0.00 0.00 4.79
56 57 2.504274 AAAGGACACTGCCGGACGA 61.504 57.895 5.05 0.00 0.00 4.20
57 58 2.436087 AAAGGACACTGCCGGACGAG 62.436 60.000 5.05 0.00 0.00 4.18
58 59 4.436998 GGACACTGCCGGACGAGG 62.437 72.222 5.05 0.00 0.00 4.63
59 60 3.371063 GACACTGCCGGACGAGGA 61.371 66.667 5.05 0.00 0.00 3.71
60 61 3.628280 GACACTGCCGGACGAGGAC 62.628 68.421 5.05 0.00 0.00 3.85
61 62 4.778415 CACTGCCGGACGAGGACG 62.778 72.222 5.05 0.00 45.75 4.79
63 64 4.477975 CTGCCGGACGAGGACGAC 62.478 72.222 5.05 0.00 42.66 4.34
68 69 2.360852 GGACGAGGACGACCCAGA 60.361 66.667 0.00 0.00 45.39 3.86
69 70 1.975407 GGACGAGGACGACCCAGAA 60.975 63.158 0.00 0.00 45.39 3.02
70 71 1.530013 GGACGAGGACGACCCAGAAA 61.530 60.000 0.00 0.00 45.39 2.52
71 72 0.109226 GACGAGGACGACCCAGAAAG 60.109 60.000 0.00 0.00 42.66 2.62
72 73 1.446272 CGAGGACGACCCAGAAAGC 60.446 63.158 0.00 0.00 42.66 3.51
73 74 1.446272 GAGGACGACCCAGAAAGCG 60.446 63.158 0.00 0.00 37.41 4.68
74 75 2.156051 GAGGACGACCCAGAAAGCGT 62.156 60.000 0.00 0.00 39.99 5.07
75 76 3.857909 GACGACCCAGAAAGCGTC 58.142 61.111 0.00 0.00 44.83 5.19
76 77 1.737008 GACGACCCAGAAAGCGTCC 60.737 63.158 0.00 0.00 45.16 4.79
77 78 2.809601 CGACCCAGAAAGCGTCCG 60.810 66.667 0.00 0.00 0.00 4.79
78 79 3.119096 GACCCAGAAAGCGTCCGC 61.119 66.667 2.94 2.94 42.33 5.54
90 91 2.665185 GTCCGCTTGTGTCCGCTT 60.665 61.111 0.00 0.00 0.00 4.68
91 92 2.110213 TCCGCTTGTGTCCGCTTT 59.890 55.556 0.00 0.00 0.00 3.51
92 93 2.250939 TCCGCTTGTGTCCGCTTTG 61.251 57.895 0.00 0.00 0.00 2.77
93 94 2.252260 CGCTTGTGTCCGCTTTGG 59.748 61.111 0.00 0.00 40.09 3.28
102 103 1.963679 TCCGCTTTGGATGCAAACC 59.036 52.632 8.47 1.43 43.74 3.27
103 104 1.079888 CCGCTTTGGATGCAAACCC 60.080 57.895 8.47 2.26 42.00 4.11
104 105 1.664873 CGCTTTGGATGCAAACCCA 59.335 52.632 8.47 6.33 0.00 4.51
105 106 0.388907 CGCTTTGGATGCAAACCCAG 60.389 55.000 8.47 0.00 33.43 4.45
106 107 0.671472 GCTTTGGATGCAAACCCAGC 60.671 55.000 8.47 6.94 33.43 4.85
107 108 0.971386 CTTTGGATGCAAACCCAGCT 59.029 50.000 8.47 0.00 33.43 4.24
108 109 0.968405 TTTGGATGCAAACCCAGCTC 59.032 50.000 8.47 0.00 33.43 4.09
109 110 0.178967 TTGGATGCAAACCCAGCTCA 60.179 50.000 0.00 0.00 33.43 4.26
110 111 0.178967 TGGATGCAAACCCAGCTCAA 60.179 50.000 10.15 0.00 0.00 3.02
111 112 0.968405 GGATGCAAACCCAGCTCAAA 59.032 50.000 0.00 0.00 0.00 2.69
112 113 1.551883 GGATGCAAACCCAGCTCAAAT 59.448 47.619 0.00 0.00 0.00 2.32
113 114 2.027837 GGATGCAAACCCAGCTCAAATT 60.028 45.455 0.00 0.00 0.00 1.82
114 115 3.557686 GGATGCAAACCCAGCTCAAATTT 60.558 43.478 0.00 0.00 0.00 1.82
115 116 2.836262 TGCAAACCCAGCTCAAATTTG 58.164 42.857 12.15 12.15 34.17 2.32
116 117 2.433604 TGCAAACCCAGCTCAAATTTGA 59.566 40.909 19.45 19.45 33.08 2.69
129 130 4.002982 TCAAATTTGAGTCCACGATGAGG 58.997 43.478 16.91 0.00 32.50 3.86
130 131 3.703001 AATTTGAGTCCACGATGAGGT 57.297 42.857 0.00 0.00 0.00 3.85
131 132 2.455674 TTTGAGTCCACGATGAGGTG 57.544 50.000 0.00 0.00 37.66 4.00
137 138 2.184322 CACGATGAGGTGGGACGG 59.816 66.667 0.00 0.00 34.27 4.79
138 139 2.036731 ACGATGAGGTGGGACGGA 59.963 61.111 0.00 0.00 0.00 4.69
139 140 1.381327 ACGATGAGGTGGGACGGAT 60.381 57.895 0.00 0.00 0.00 4.18
140 141 0.106369 ACGATGAGGTGGGACGGATA 60.106 55.000 0.00 0.00 0.00 2.59
141 142 1.037493 CGATGAGGTGGGACGGATAA 58.963 55.000 0.00 0.00 0.00 1.75
142 143 1.000163 CGATGAGGTGGGACGGATAAG 60.000 57.143 0.00 0.00 0.00 1.73
143 144 2.317040 GATGAGGTGGGACGGATAAGA 58.683 52.381 0.00 0.00 0.00 2.10
144 145 2.241281 TGAGGTGGGACGGATAAGAA 57.759 50.000 0.00 0.00 0.00 2.52
145 146 2.542550 TGAGGTGGGACGGATAAGAAA 58.457 47.619 0.00 0.00 0.00 2.52
146 147 3.112263 TGAGGTGGGACGGATAAGAAAT 58.888 45.455 0.00 0.00 0.00 2.17
147 148 3.118408 TGAGGTGGGACGGATAAGAAATG 60.118 47.826 0.00 0.00 0.00 2.32
148 149 2.172717 AGGTGGGACGGATAAGAAATGG 59.827 50.000 0.00 0.00 0.00 3.16
149 150 2.171870 GGTGGGACGGATAAGAAATGGA 59.828 50.000 0.00 0.00 0.00 3.41
150 151 3.203716 GTGGGACGGATAAGAAATGGAC 58.796 50.000 0.00 0.00 0.00 4.02
151 152 3.112263 TGGGACGGATAAGAAATGGACT 58.888 45.455 0.00 0.00 0.00 3.85
152 153 3.521937 TGGGACGGATAAGAAATGGACTT 59.478 43.478 0.00 0.00 0.00 3.01
153 154 4.018779 TGGGACGGATAAGAAATGGACTTT 60.019 41.667 0.00 0.00 0.00 2.66
154 155 4.948004 GGGACGGATAAGAAATGGACTTTT 59.052 41.667 0.00 0.00 0.00 2.27
155 156 5.417894 GGGACGGATAAGAAATGGACTTTTT 59.582 40.000 0.00 0.00 0.00 1.94
172 173 0.241481 TTTTTACGGATGGGTTGCGC 59.759 50.000 0.00 0.00 43.91 6.09
173 174 1.913451 TTTTACGGATGGGTTGCGCG 61.913 55.000 0.00 0.00 43.91 6.86
174 175 3.592856 TTACGGATGGGTTGCGCGT 62.593 57.895 8.43 0.00 43.91 6.01
175 176 3.592856 TACGGATGGGTTGCGCGTT 62.593 57.895 8.43 0.00 43.91 4.84
176 177 4.459331 CGGATGGGTTGCGCGTTG 62.459 66.667 8.43 0.00 30.45 4.10
177 178 4.114997 GGATGGGTTGCGCGTTGG 62.115 66.667 8.43 0.00 0.00 3.77
178 179 4.114997 GATGGGTTGCGCGTTGGG 62.115 66.667 8.43 0.00 0.00 4.12
179 180 4.966787 ATGGGTTGCGCGTTGGGT 62.967 61.111 8.43 0.00 0.00 4.51
183 184 4.364409 GTTGCGCGTTGGGTCGTC 62.364 66.667 8.43 0.00 0.00 4.20
184 185 4.595538 TTGCGCGTTGGGTCGTCT 62.596 61.111 8.43 0.00 0.00 4.18
187 188 2.126071 CGCGTTGGGTCGTCTCAT 60.126 61.111 0.00 0.00 0.00 2.90
188 189 1.736645 CGCGTTGGGTCGTCTCATT 60.737 57.895 0.00 0.00 0.00 2.57
189 190 1.289109 CGCGTTGGGTCGTCTCATTT 61.289 55.000 0.00 0.00 0.00 2.32
190 191 0.165944 GCGTTGGGTCGTCTCATTTG 59.834 55.000 0.00 0.00 0.00 2.32
191 192 1.508632 CGTTGGGTCGTCTCATTTGT 58.491 50.000 0.00 0.00 0.00 2.83
192 193 2.679450 CGTTGGGTCGTCTCATTTGTA 58.321 47.619 0.00 0.00 0.00 2.41
193 194 2.410730 CGTTGGGTCGTCTCATTTGTAC 59.589 50.000 0.00 0.00 0.00 2.90
194 195 2.357327 TGGGTCGTCTCATTTGTACG 57.643 50.000 0.00 0.00 37.96 3.67
195 196 1.614903 TGGGTCGTCTCATTTGTACGT 59.385 47.619 0.00 0.00 37.83 3.57
196 197 2.036217 TGGGTCGTCTCATTTGTACGTT 59.964 45.455 0.00 0.00 37.83 3.99
197 198 3.062042 GGGTCGTCTCATTTGTACGTTT 58.938 45.455 0.00 0.00 37.83 3.60
198 199 4.236935 GGGTCGTCTCATTTGTACGTTTA 58.763 43.478 0.00 0.00 37.83 2.01
199 200 4.685628 GGGTCGTCTCATTTGTACGTTTAA 59.314 41.667 0.00 0.00 37.83 1.52
200 201 5.388786 GGGTCGTCTCATTTGTACGTTTAAC 60.389 44.000 0.00 0.00 37.83 2.01
201 202 5.403466 GGTCGTCTCATTTGTACGTTTAACT 59.597 40.000 0.00 0.00 37.83 2.24
202 203 6.399354 GGTCGTCTCATTTGTACGTTTAACTC 60.399 42.308 0.00 0.00 37.83 3.01
203 204 5.630680 TCGTCTCATTTGTACGTTTAACTCC 59.369 40.000 0.00 0.00 37.83 3.85
204 205 5.403166 CGTCTCATTTGTACGTTTAACTCCA 59.597 40.000 0.00 0.00 32.16 3.86
205 206 6.074195 CGTCTCATTTGTACGTTTAACTCCAA 60.074 38.462 0.00 0.00 32.16 3.53
206 207 7.517101 CGTCTCATTTGTACGTTTAACTCCAAA 60.517 37.037 0.00 6.29 32.16 3.28
207 208 7.585210 GTCTCATTTGTACGTTTAACTCCAAAC 59.415 37.037 0.00 0.00 35.49 2.93
228 229 3.734776 GGAGATAACCGAACGTTTTGG 57.265 47.619 16.39 16.39 40.28 3.28
229 230 2.417586 GGAGATAACCGAACGTTTTGGG 59.582 50.000 20.48 15.93 38.62 4.12
230 231 3.069289 GAGATAACCGAACGTTTTGGGT 58.931 45.455 20.48 17.64 45.23 4.51
231 232 3.069289 AGATAACCGAACGTTTTGGGTC 58.931 45.455 20.48 15.44 42.67 4.46
232 233 1.216122 TAACCGAACGTTTTGGGTCG 58.784 50.000 20.48 10.97 42.67 4.79
233 234 2.050639 AACCGAACGTTTTGGGTCGC 62.051 55.000 20.48 0.00 42.67 5.19
234 235 2.127906 CGAACGTTTTGGGTCGCG 60.128 61.111 0.46 0.00 0.00 5.87
235 236 2.426261 GAACGTTTTGGGTCGCGC 60.426 61.111 0.46 0.00 0.00 6.86
236 237 4.302172 AACGTTTTGGGTCGCGCG 62.302 61.111 26.76 26.76 0.00 6.86
239 240 4.676586 GTTTTGGGTCGCGCGGTG 62.677 66.667 31.69 1.17 0.00 4.94
249 250 4.148825 GCGCGGTGGAGATGGTCT 62.149 66.667 8.83 0.00 0.00 3.85
250 251 2.782222 GCGCGGTGGAGATGGTCTA 61.782 63.158 8.83 0.00 0.00 2.59
251 252 1.813859 CGCGGTGGAGATGGTCTAA 59.186 57.895 0.00 0.00 0.00 2.10
252 253 0.249073 CGCGGTGGAGATGGTCTAAG 60.249 60.000 0.00 0.00 0.00 2.18
253 254 0.105039 GCGGTGGAGATGGTCTAAGG 59.895 60.000 0.00 0.00 0.00 2.69
254 255 0.105039 CGGTGGAGATGGTCTAAGGC 59.895 60.000 0.00 0.00 0.00 4.35
255 256 1.501582 GGTGGAGATGGTCTAAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
256 257 1.139853 GGTGGAGATGGTCTAAGGCTG 59.860 57.143 0.00 0.00 0.00 4.85
257 258 1.834263 GTGGAGATGGTCTAAGGCTGT 59.166 52.381 0.00 0.00 0.00 4.40
258 259 2.237392 GTGGAGATGGTCTAAGGCTGTT 59.763 50.000 0.00 0.00 0.00 3.16
259 260 2.912956 TGGAGATGGTCTAAGGCTGTTT 59.087 45.455 0.00 0.00 0.00 2.83
260 261 3.274288 GGAGATGGTCTAAGGCTGTTTG 58.726 50.000 0.00 0.00 0.00 2.93
261 262 3.307762 GGAGATGGTCTAAGGCTGTTTGT 60.308 47.826 0.00 0.00 0.00 2.83
262 263 4.081087 GGAGATGGTCTAAGGCTGTTTGTA 60.081 45.833 0.00 0.00 0.00 2.41
263 264 5.488341 GAGATGGTCTAAGGCTGTTTGTAA 58.512 41.667 0.00 0.00 0.00 2.41
264 265 6.067217 AGATGGTCTAAGGCTGTTTGTAAT 57.933 37.500 0.00 0.00 0.00 1.89
265 266 5.882557 AGATGGTCTAAGGCTGTTTGTAATG 59.117 40.000 0.00 0.00 0.00 1.90
266 267 4.331968 TGGTCTAAGGCTGTTTGTAATGG 58.668 43.478 0.00 0.00 0.00 3.16
267 268 4.042311 TGGTCTAAGGCTGTTTGTAATGGA 59.958 41.667 0.00 0.00 0.00 3.41
268 269 5.193679 GGTCTAAGGCTGTTTGTAATGGAT 58.806 41.667 0.00 0.00 0.00 3.41
269 270 6.069905 TGGTCTAAGGCTGTTTGTAATGGATA 60.070 38.462 0.00 0.00 0.00 2.59
270 271 6.483640 GGTCTAAGGCTGTTTGTAATGGATAG 59.516 42.308 0.00 0.00 0.00 2.08
271 272 7.048512 GTCTAAGGCTGTTTGTAATGGATAGT 58.951 38.462 0.00 0.00 0.00 2.12
272 273 8.202137 GTCTAAGGCTGTTTGTAATGGATAGTA 58.798 37.037 0.00 0.00 0.00 1.82
273 274 8.934697 TCTAAGGCTGTTTGTAATGGATAGTAT 58.065 33.333 0.00 0.00 0.00 2.12
274 275 9.209175 CTAAGGCTGTTTGTAATGGATAGTATC 57.791 37.037 1.11 1.11 0.00 2.24
275 276 7.136822 AGGCTGTTTGTAATGGATAGTATCA 57.863 36.000 12.19 0.00 0.00 2.15
276 277 7.749666 AGGCTGTTTGTAATGGATAGTATCAT 58.250 34.615 12.19 1.61 0.00 2.45
277 278 8.880244 AGGCTGTTTGTAATGGATAGTATCATA 58.120 33.333 12.19 1.05 0.00 2.15
278 279 9.502091 GGCTGTTTGTAATGGATAGTATCATAA 57.498 33.333 12.19 0.00 0.00 1.90
308 309 8.777865 GTATCATGCATATGGTACTAATGTGT 57.222 34.615 0.00 0.00 44.14 3.72
309 310 7.677454 ATCATGCATATGGTACTAATGTGTG 57.323 36.000 0.00 0.00 34.97 3.82
310 311 6.825610 TCATGCATATGGTACTAATGTGTGA 58.174 36.000 0.00 1.68 34.97 3.58
311 312 7.452562 TCATGCATATGGTACTAATGTGTGAT 58.547 34.615 0.00 0.00 34.97 3.06
312 313 8.592809 TCATGCATATGGTACTAATGTGTGATA 58.407 33.333 0.00 0.00 34.97 2.15
313 314 8.659491 CATGCATATGGTACTAATGTGTGATAC 58.341 37.037 0.00 0.00 0.00 2.24
314 315 7.962441 TGCATATGGTACTAATGTGTGATACT 58.038 34.615 4.56 0.00 0.00 2.12
315 316 9.084533 TGCATATGGTACTAATGTGTGATACTA 57.915 33.333 4.56 0.00 0.00 1.82
316 317 9.355215 GCATATGGTACTAATGTGTGATACTAC 57.645 37.037 4.56 0.00 0.00 2.73
317 318 9.856488 CATATGGTACTAATGTGTGATACTACC 57.144 37.037 0.00 0.00 0.00 3.18
318 319 9.824216 ATATGGTACTAATGTGTGATACTACCT 57.176 33.333 0.00 0.00 30.42 3.08
319 320 7.578310 TGGTACTAATGTGTGATACTACCTC 57.422 40.000 0.00 0.00 30.42 3.85
320 321 6.548622 TGGTACTAATGTGTGATACTACCTCC 59.451 42.308 0.00 0.00 30.42 4.30
321 322 6.015603 GGTACTAATGTGTGATACTACCTCCC 60.016 46.154 0.00 0.00 0.00 4.30
322 323 5.778542 ACTAATGTGTGATACTACCTCCCT 58.221 41.667 0.00 0.00 0.00 4.20
323 324 6.919158 ACTAATGTGTGATACTACCTCCCTA 58.081 40.000 0.00 0.00 0.00 3.53
324 325 7.359849 ACTAATGTGTGATACTACCTCCCTAA 58.640 38.462 0.00 0.00 0.00 2.69
325 326 8.011290 ACTAATGTGTGATACTACCTCCCTAAT 58.989 37.037 0.00 0.00 0.00 1.73
326 327 9.529823 CTAATGTGTGATACTACCTCCCTAATA 57.470 37.037 0.00 0.00 0.00 0.98
327 328 7.778185 ATGTGTGATACTACCTCCCTAATAC 57.222 40.000 0.00 0.00 0.00 1.89
328 329 6.675565 TGTGTGATACTACCTCCCTAATACA 58.324 40.000 0.00 0.00 0.00 2.29
329 330 7.302948 TGTGTGATACTACCTCCCTAATACAT 58.697 38.462 0.00 0.00 0.00 2.29
330 331 8.450434 TGTGTGATACTACCTCCCTAATACATA 58.550 37.037 0.00 0.00 0.00 2.29
331 332 8.958506 GTGTGATACTACCTCCCTAATACATAG 58.041 40.741 0.00 0.00 0.00 2.23
332 333 8.676020 TGTGATACTACCTCCCTAATACATAGT 58.324 37.037 0.00 0.00 0.00 2.12
338 339 9.702253 ACTACCTCCCTAATACATAGTATCATG 57.298 37.037 0.00 0.00 0.00 3.07
339 340 9.702253 CTACCTCCCTAATACATAGTATCATGT 57.298 37.037 0.00 0.00 41.88 3.21
341 342 9.476928 ACCTCCCTAATACATAGTATCATGTAC 57.523 37.037 0.00 0.00 42.58 2.90
342 343 9.702253 CCTCCCTAATACATAGTATCATGTACT 57.298 37.037 11.17 11.17 42.58 2.73
374 375 9.608617 CATAGATGACTTTATTCATTGTCATGC 57.391 33.333 11.44 4.86 46.22 4.06
375 376 7.634671 AGATGACTTTATTCATTGTCATGCA 57.365 32.000 11.44 0.00 46.22 3.96
376 377 8.234136 AGATGACTTTATTCATTGTCATGCAT 57.766 30.769 11.44 0.00 46.22 3.96
377 378 8.135529 AGATGACTTTATTCATTGTCATGCATG 58.864 33.333 21.07 21.07 46.22 4.06
378 379 7.393841 TGACTTTATTCATTGTCATGCATGA 57.606 32.000 25.42 25.42 34.94 3.07
390 391 4.405116 TCATGCATGACACATAGTAGCA 57.595 40.909 25.42 0.00 37.13 3.49
391 392 4.964593 TCATGCATGACACATAGTAGCAT 58.035 39.130 25.42 0.00 41.24 3.79
392 393 5.370679 TCATGCATGACACATAGTAGCATT 58.629 37.500 25.42 0.00 39.67 3.56
393 394 5.237779 TCATGCATGACACATAGTAGCATTG 59.762 40.000 25.42 0.00 39.67 2.82
394 395 3.313249 TGCATGACACATAGTAGCATTGC 59.687 43.478 0.00 0.00 30.65 3.56
395 396 3.313249 GCATGACACATAGTAGCATTGCA 59.687 43.478 11.91 0.00 0.00 4.08
396 397 4.023450 GCATGACACATAGTAGCATTGCAT 60.023 41.667 11.91 0.00 0.00 3.96
397 398 5.506815 GCATGACACATAGTAGCATTGCATT 60.507 40.000 11.91 0.00 0.00 3.56
398 399 6.500910 CATGACACATAGTAGCATTGCATTT 58.499 36.000 11.91 0.00 0.00 2.32
399 400 7.641760 CATGACACATAGTAGCATTGCATTTA 58.358 34.615 11.91 0.17 0.00 1.40
400 401 7.806409 TGACACATAGTAGCATTGCATTTAT 57.194 32.000 11.91 2.57 0.00 1.40
401 402 8.224389 TGACACATAGTAGCATTGCATTTATT 57.776 30.769 11.91 0.00 0.00 1.40
402 403 9.336171 TGACACATAGTAGCATTGCATTTATTA 57.664 29.630 11.91 0.00 0.00 0.98
410 411 8.668353 AGTAGCATTGCATTTATTATGATACGG 58.332 33.333 11.91 0.00 41.95 4.02
411 412 7.452880 AGCATTGCATTTATTATGATACGGT 57.547 32.000 11.91 0.00 0.00 4.83
412 413 8.560355 AGCATTGCATTTATTATGATACGGTA 57.440 30.769 11.91 0.00 0.00 4.02
413 414 9.177608 AGCATTGCATTTATTATGATACGGTAT 57.822 29.630 11.91 0.00 0.00 2.73
414 415 9.438291 GCATTGCATTTATTATGATACGGTATC 57.562 33.333 18.97 18.97 35.74 2.24
438 439 8.727100 TCATTGTATGATACCCAACTATCTCT 57.273 34.615 0.00 0.00 33.59 3.10
439 440 9.159254 TCATTGTATGATACCCAACTATCTCTT 57.841 33.333 0.00 0.00 33.59 2.85
440 441 9.784531 CATTGTATGATACCCAACTATCTCTTT 57.215 33.333 0.00 0.00 0.00 2.52
442 443 8.783660 TGTATGATACCCAACTATCTCTTTCT 57.216 34.615 0.00 0.00 0.00 2.52
443 444 9.213777 TGTATGATACCCAACTATCTCTTTCTT 57.786 33.333 0.00 0.00 0.00 2.52
444 445 9.699703 GTATGATACCCAACTATCTCTTTCTTC 57.300 37.037 0.00 0.00 0.00 2.87
445 446 7.733773 TGATACCCAACTATCTCTTTCTTCA 57.266 36.000 0.00 0.00 0.00 3.02
446 447 8.324191 TGATACCCAACTATCTCTTTCTTCAT 57.676 34.615 0.00 0.00 0.00 2.57
447 448 8.772250 TGATACCCAACTATCTCTTTCTTCATT 58.228 33.333 0.00 0.00 0.00 2.57
448 449 9.620259 GATACCCAACTATCTCTTTCTTCATTT 57.380 33.333 0.00 0.00 0.00 2.32
451 452 9.981460 ACCCAACTATCTCTTTCTTCATTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
477 478 8.929260 TCTATATCACATCATCAAAATTGCCT 57.071 30.769 0.00 0.00 0.00 4.75
480 481 8.701908 ATATCACATCATCAAAATTGCCTACT 57.298 30.769 0.00 0.00 0.00 2.57
481 482 6.839124 TCACATCATCAAAATTGCCTACTT 57.161 33.333 0.00 0.00 0.00 2.24
482 483 7.936496 TCACATCATCAAAATTGCCTACTTA 57.064 32.000 0.00 0.00 0.00 2.24
483 484 8.347004 TCACATCATCAAAATTGCCTACTTAA 57.653 30.769 0.00 0.00 0.00 1.85
484 485 8.243426 TCACATCATCAAAATTGCCTACTTAAC 58.757 33.333 0.00 0.00 0.00 2.01
485 486 8.028354 CACATCATCAAAATTGCCTACTTAACA 58.972 33.333 0.00 0.00 0.00 2.41
486 487 8.752187 ACATCATCAAAATTGCCTACTTAACAT 58.248 29.630 0.00 0.00 0.00 2.71
487 488 9.027129 CATCATCAAAATTGCCTACTTAACATG 57.973 33.333 0.00 0.00 0.00 3.21
488 489 7.035004 TCATCAAAATTGCCTACTTAACATGC 58.965 34.615 0.00 0.00 0.00 4.06
489 490 6.338214 TCAAAATTGCCTACTTAACATGCA 57.662 33.333 0.00 0.00 0.00 3.96
490 491 6.934056 TCAAAATTGCCTACTTAACATGCAT 58.066 32.000 0.00 0.00 0.00 3.96
491 492 6.812656 TCAAAATTGCCTACTTAACATGCATG 59.187 34.615 25.09 25.09 0.00 4.06
492 493 6.528537 AAATTGCCTACTTAACATGCATGA 57.471 33.333 32.75 9.00 0.00 3.07
493 494 6.720112 AATTGCCTACTTAACATGCATGAT 57.280 33.333 32.75 23.52 0.00 2.45
494 495 7.822161 AATTGCCTACTTAACATGCATGATA 57.178 32.000 32.75 22.38 0.00 2.15
495 496 6.618287 TTGCCTACTTAACATGCATGATAC 57.382 37.500 32.75 12.46 0.00 2.24
496 497 5.928976 TGCCTACTTAACATGCATGATACT 58.071 37.500 32.75 14.60 0.00 2.12
497 498 7.061566 TGCCTACTTAACATGCATGATACTA 57.938 36.000 32.75 14.91 0.00 1.82
498 499 7.154656 TGCCTACTTAACATGCATGATACTAG 58.845 38.462 32.75 20.73 0.00 2.57
499 500 7.155328 GCCTACTTAACATGCATGATACTAGT 58.845 38.462 32.75 24.61 0.00 2.57
500 501 7.657761 GCCTACTTAACATGCATGATACTAGTT 59.342 37.037 32.75 16.47 0.00 2.24
510 511 9.526713 CATGCATGATACTAGTTATGATACTCC 57.473 37.037 22.59 0.00 0.00 3.85
511 512 8.067751 TGCATGATACTAGTTATGATACTCCC 57.932 38.462 0.00 0.00 0.00 4.30
512 513 7.673926 TGCATGATACTAGTTATGATACTCCCA 59.326 37.037 0.00 0.00 0.00 4.37
513 514 8.700051 GCATGATACTAGTTATGATACTCCCAT 58.300 37.037 0.00 0.00 0.00 4.00
520 521 9.091220 ACTAGTTATGATACTCCCATTAGAACC 57.909 37.037 0.00 0.00 0.00 3.62
521 522 6.994221 AGTTATGATACTCCCATTAGAACCG 58.006 40.000 0.00 0.00 0.00 4.44
522 523 4.891992 ATGATACTCCCATTAGAACCGG 57.108 45.455 0.00 0.00 0.00 5.28
523 524 2.969950 TGATACTCCCATTAGAACCGGG 59.030 50.000 6.32 0.00 41.76 5.73
524 525 1.125633 TACTCCCATTAGAACCGGGC 58.874 55.000 6.32 0.00 40.05 6.13
525 526 0.620700 ACTCCCATTAGAACCGGGCT 60.621 55.000 6.32 5.20 40.05 5.19
550 551 3.753294 TTTATCTCGCCAGATTCCTCC 57.247 47.619 0.00 0.00 40.18 4.30
552 553 0.757188 ATCTCGCCAGATTCCTCCGT 60.757 55.000 0.00 0.00 35.67 4.69
587 588 1.449726 GAAACAAAACCCCGGTCGCT 61.450 55.000 0.00 0.00 0.00 4.93
739 741 4.354943 CCCACCCCTGTCCTCCCT 62.355 72.222 0.00 0.00 0.00 4.20
740 742 2.689034 CCACCCCTGTCCTCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
742 744 2.876858 ACCCCTGTCCTCCCTCCT 60.877 66.667 0.00 0.00 0.00 3.69
822 834 1.000646 ACAGGTCTCGTCCCTCTCC 60.001 63.158 0.00 0.00 0.00 3.71
826 838 1.316706 GGTCTCGTCCCTCTCCACTG 61.317 65.000 0.00 0.00 0.00 3.66
839 851 2.828520 TCTCCACTGCTCCAAAGACTAG 59.171 50.000 0.00 0.00 0.00 2.57
850 862 2.492484 CCAAAGACTAGTACCGCTCTGT 59.508 50.000 0.00 0.00 0.00 3.41
870 883 4.228010 TGTCTCTCCTCTCTAGCTAGCTA 58.772 47.826 22.85 22.85 0.00 3.32
871 884 4.283467 TGTCTCTCCTCTCTAGCTAGCTAG 59.717 50.000 36.20 36.20 45.38 3.42
904 917 4.314440 TGTCCCTCGGCACAGCAC 62.314 66.667 0.00 0.00 0.00 4.40
905 918 4.314440 GTCCCTCGGCACAGCACA 62.314 66.667 0.00 0.00 0.00 4.57
906 919 4.314440 TCCCTCGGCACAGCACAC 62.314 66.667 0.00 0.00 0.00 3.82
907 920 4.624364 CCCTCGGCACAGCACACA 62.624 66.667 0.00 0.00 0.00 3.72
908 921 3.046087 CCTCGGCACAGCACACAG 61.046 66.667 0.00 0.00 0.00 3.66
909 922 3.720193 CTCGGCACAGCACACAGC 61.720 66.667 0.00 0.00 46.19 4.40
1611 1659 4.680237 CACCGCGACCTCAAGCCA 62.680 66.667 8.23 0.00 0.00 4.75
1747 1795 2.133742 CTGGTCGCTGCACTTTTGGG 62.134 60.000 0.00 0.00 0.00 4.12
1977 2032 7.751348 CGGTAGTATGTCTCTTGATATAGTTGC 59.249 40.741 0.00 0.00 33.74 4.17
2357 3086 6.566141 TGATCATGAAAAATATGCCACAGTG 58.434 36.000 0.00 0.00 0.00 3.66
2658 3614 3.008923 TGTCACTTGTCCTTCATGCCATA 59.991 43.478 0.00 0.00 0.00 2.74
2747 3707 7.672983 TTCAATCACTAAGAATTGACTCCAC 57.327 36.000 0.00 0.00 33.37 4.02
2795 3755 3.445805 ACCAAACAGTTGTAACTTGTGGG 59.554 43.478 16.45 13.97 37.08 4.61
2822 3782 2.240612 CTTGCCGTTGCCGTAGCTTC 62.241 60.000 0.00 0.00 40.80 3.86
2908 3868 5.539574 TGTTGATTATAGGCATCCCAAATGG 59.460 40.000 0.00 0.00 0.00 3.16
2930 3890 8.588290 ATGGTTTTAGGCAACACATCTTATTA 57.412 30.769 0.00 0.00 41.41 0.98
3037 4011 8.757982 AGATAAGCCATCTGAAAATGTGTAAT 57.242 30.769 0.00 0.00 42.69 1.89
3040 4014 5.957798 AGCCATCTGAAAATGTGTAATGTG 58.042 37.500 0.00 0.00 0.00 3.21
3169 4144 2.751166 ACTTTGCTATCTGTCGCACT 57.249 45.000 0.00 0.00 35.60 4.40
3797 4947 7.282901 CCCCTTTCATGTTCTGTTTTTCAATTT 59.717 33.333 0.00 0.00 0.00 1.82
3844 4994 1.004080 CACTGGACCAGTCTGCCTG 60.004 63.158 24.76 8.62 43.43 4.85
3981 5267 3.950395 CTCAGATCAATTTGAAGGACCCC 59.050 47.826 2.68 0.00 0.00 4.95
4085 5947 8.163408 TGGTAGCATATTATTGCCTTCTGTAAT 58.837 33.333 0.00 0.00 43.83 1.89
4251 6113 2.800629 GCATGAAACACAGTTGCAAGCT 60.801 45.455 10.02 0.00 35.39 3.74
4252 6114 2.565210 TGAAACACAGTTGCAAGCTG 57.435 45.000 20.47 20.47 39.67 4.24
4355 6217 6.343716 TGGACAGCATTATGTTGATTTTGT 57.656 33.333 15.62 0.00 32.65 2.83
4467 6331 8.409358 AGCTACATTTGTTCCTTCTTACAATT 57.591 30.769 0.00 0.00 34.52 2.32
4479 6343 1.066002 CTTACAATTGCGGGATGCCTG 59.934 52.381 5.05 0.00 45.60 4.85
4540 6407 9.698617 GTTATCCACACATTTAATCGACTTTAC 57.301 33.333 0.00 0.00 0.00 2.01
4546 6413 7.685304 CACACATTTAATCGACTTTACGTTACC 59.315 37.037 0.00 0.00 34.70 2.85
4748 6678 8.023021 AGAAGAGCTTTAAGGGTTTGAATTTT 57.977 30.769 0.00 0.00 0.00 1.82
4757 6687 4.447290 AGGGTTTGAATTTTGTTTTCCCG 58.553 39.130 0.00 0.00 37.63 5.14
4770 6701 7.626144 TTTGTTTTCCCGTTAATCGATTTTC 57.374 32.000 17.19 8.85 42.86 2.29
5082 7019 7.667575 AGATTAACTGAGCCTCTATCTTTGA 57.332 36.000 0.00 0.00 0.00 2.69
5105 7042 2.257353 AGTCCAAACTGAATGGCGC 58.743 52.632 0.00 0.00 37.88 6.53
5149 7089 8.237811 TGTCTGATACATAGTTCTATTGCTCA 57.762 34.615 0.00 0.00 31.43 4.26
5262 7203 4.251103 AGTTCTTGGGACCTTGAAAAGT 57.749 40.909 0.00 0.00 44.25 2.66
5263 7204 5.382664 AGTTCTTGGGACCTTGAAAAGTA 57.617 39.130 0.00 0.00 44.25 2.24
5264 7205 5.131067 AGTTCTTGGGACCTTGAAAAGTAC 58.869 41.667 0.00 0.00 44.25 2.73
5267 7208 3.782656 TGGGACCTTGAAAAGTACTCC 57.217 47.619 0.00 0.00 44.25 3.85
5269 7210 2.643304 GGGACCTTGAAAAGTACTCCCT 59.357 50.000 0.00 0.00 44.25 4.20
5270 7211 3.307550 GGGACCTTGAAAAGTACTCCCTC 60.308 52.174 0.00 0.00 44.25 4.30
5271 7212 3.307550 GGACCTTGAAAAGTACTCCCTCC 60.308 52.174 0.00 0.00 44.25 4.30
5273 7214 2.302157 CCTTGAAAAGTACTCCCTCCGT 59.698 50.000 0.00 0.00 44.25 4.69
5274 7215 3.244457 CCTTGAAAAGTACTCCCTCCGTT 60.244 47.826 0.00 0.00 44.25 4.44
5276 7217 2.301009 TGAAAAGTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
5277 7218 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
5278 7219 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
5279 7220 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5281 7222 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5282 7223 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5283 7224 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5284 7225 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5286 7227 2.093869 TCCCTCCGTTCCAAAATAGACG 60.094 50.000 0.00 0.00 35.44 4.18
5288 7229 2.928116 CCTCCGTTCCAAAATAGACGAC 59.072 50.000 0.00 0.00 37.69 4.34
5289 7230 2.928116 CTCCGTTCCAAAATAGACGACC 59.072 50.000 0.00 0.00 37.69 4.79
5291 7232 2.613474 CCGTTCCAAAATAGACGACCCA 60.613 50.000 0.00 0.00 37.69 4.51
5292 7233 3.068560 CGTTCCAAAATAGACGACCCAA 58.931 45.455 0.00 0.00 37.69 4.12
5293 7234 3.120442 CGTTCCAAAATAGACGACCCAAC 60.120 47.826 0.00 0.00 37.69 3.77
5294 7235 4.070009 GTTCCAAAATAGACGACCCAACT 58.930 43.478 0.00 0.00 0.00 3.16
5295 7236 4.360951 TCCAAAATAGACGACCCAACTT 57.639 40.909 0.00 0.00 0.00 2.66
5296 7237 4.721132 TCCAAAATAGACGACCCAACTTT 58.279 39.130 0.00 0.00 0.00 2.66
5298 7239 6.478129 TCCAAAATAGACGACCCAACTTTAT 58.522 36.000 0.00 0.00 0.00 1.40
5300 7241 7.550196 TCCAAAATAGACGACCCAACTTTATAC 59.450 37.037 0.00 0.00 0.00 1.47
5302 7243 9.590451 CAAAATAGACGACCCAACTTTATACTA 57.410 33.333 0.00 0.00 0.00 1.82
5304 7245 9.591792 AAATAGACGACCCAACTTTATACTAAC 57.408 33.333 0.00 0.00 0.00 2.34
5306 7247 7.237209 AGACGACCCAACTTTATACTAACTT 57.763 36.000 0.00 0.00 0.00 2.66
5308 7249 7.601508 AGACGACCCAACTTTATACTAACTTTG 59.398 37.037 0.00 0.00 0.00 2.77
5309 7250 7.219322 ACGACCCAACTTTATACTAACTTTGT 58.781 34.615 0.00 0.00 0.00 2.83
5310 7251 7.716560 ACGACCCAACTTTATACTAACTTTGTT 59.283 33.333 0.00 0.00 0.00 2.83
5311 7252 8.562052 CGACCCAACTTTATACTAACTTTGTTT 58.438 33.333 0.00 0.00 0.00 2.83
5349 7290 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5350 7291 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5351 7292 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5352 7293 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5353 7294 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5354 7295 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5407 7508 4.666512 ACCTGCACTTTCATTTCCAGTAT 58.333 39.130 0.00 0.00 0.00 2.12
5431 7532 7.297936 TGGACATTTCTGTTCTACTCACTTA 57.702 36.000 0.00 0.00 35.14 2.24
5489 7590 7.121168 CCTCATGGCTAACATTTTTCTGAAGTA 59.879 37.037 0.00 0.00 37.84 2.24
5615 7716 2.346803 ACCACTATTGCATGTGACGTC 58.653 47.619 9.11 9.11 36.38 4.34
5617 7718 2.741517 CCACTATTGCATGTGACGTCAA 59.258 45.455 21.95 11.23 36.38 3.18
5649 7750 9.533831 ACTTGAGAATTAAGTATTCCAAATGGT 57.466 29.630 0.00 0.00 43.08 3.55
5669 7782 4.571580 TGGTTTGACTTGTGTAGTTTACGG 59.428 41.667 0.00 0.00 37.17 4.02
5680 7793 5.821470 TGTGTAGTTTACGGGAACAAAATGA 59.179 36.000 6.05 0.00 31.94 2.57
5988 8964 2.820059 CTTTTGCCAAAAGGAGGGTC 57.180 50.000 19.87 0.00 43.19 4.46
5991 8967 0.178964 TTGCCAAAAGGAGGGTCCAG 60.179 55.000 0.00 0.00 39.61 3.86
6000 8976 0.985490 GGAGGGTCCAGCCTTCAGAT 60.985 60.000 0.00 0.00 44.43 2.90
6063 9039 3.261390 TGCAGGATGGCAAAATTAGCTTT 59.739 39.130 0.00 0.00 41.65 3.51
6216 9192 0.393537 ATCACAGGCTTGTAGCTGGC 60.394 55.000 0.00 0.00 41.99 4.85
6364 9341 0.599466 GTAGCTTTCCCGGTATCGCC 60.599 60.000 0.00 0.00 34.56 5.54
6497 9475 4.520492 CCTCAGATACACTTTGTTGGCTTT 59.480 41.667 0.00 0.00 0.00 3.51
6539 9517 7.563924 ACTGTATTGGTGGTTAAGAGCTAGATA 59.436 37.037 0.00 0.00 0.00 1.98
6540 9518 8.492415 TGTATTGGTGGTTAAGAGCTAGATAT 57.508 34.615 0.00 0.00 0.00 1.63
6541 9519 8.367911 TGTATTGGTGGTTAAGAGCTAGATATG 58.632 37.037 0.00 0.00 0.00 1.78
6542 9520 5.215252 TGGTGGTTAAGAGCTAGATATGC 57.785 43.478 0.00 0.00 0.00 3.14
6626 9607 1.299976 CGGGGGAAAGGGACAAGAG 59.700 63.158 0.00 0.00 0.00 2.85
6627 9608 1.691823 GGGGGAAAGGGACAAGAGG 59.308 63.158 0.00 0.00 0.00 3.69
6628 9609 1.691823 GGGGAAAGGGACAAGAGGG 59.308 63.158 0.00 0.00 0.00 4.30
6653 9634 1.470890 GCCATGTAGCCGCAACTTTTA 59.529 47.619 0.00 0.00 0.00 1.52
6694 9677 2.027561 TGCCGTTCTATTTGCAGTAGGT 60.028 45.455 7.97 0.00 0.00 3.08
6833 9816 1.808945 GAGTTTGCCTGGTCTCATGTG 59.191 52.381 0.00 0.00 0.00 3.21
6840 9823 1.808945 CCTGGTCTCATGTGCTTGTTC 59.191 52.381 0.00 0.00 0.00 3.18
6841 9824 1.462283 CTGGTCTCATGTGCTTGTTCG 59.538 52.381 0.00 0.00 0.00 3.95
6842 9825 1.202639 TGGTCTCATGTGCTTGTTCGT 60.203 47.619 0.00 0.00 0.00 3.85
6844 9827 1.195448 GTCTCATGTGCTTGTTCGTGG 59.805 52.381 0.00 0.00 0.00 4.94
6893 9906 2.368439 TGCTTCCGAAATCATTGGAGG 58.632 47.619 0.00 0.00 32.39 4.30
6968 9985 0.034337 TTCAGCTACCGCCGTTTTCT 59.966 50.000 0.00 0.00 36.60 2.52
6985 10002 5.551893 GTTTTCTAGCGGAGAAGAAAATCG 58.448 41.667 11.97 0.00 45.57 3.34
7019 10038 2.873170 TTGTTTAGACAGCGCATTCG 57.127 45.000 11.47 0.00 37.04 3.34
7052 10071 9.362151 TCATTCCAAAGTCCAAACTAATAAAGT 57.638 29.630 0.00 0.00 41.49 2.66
7106 10125 3.045634 CCAGTGGGGATGTAATAGGTGA 58.954 50.000 0.00 0.00 40.01 4.02
7107 10126 3.181454 CCAGTGGGGATGTAATAGGTGAC 60.181 52.174 0.00 0.00 40.01 3.67
7108 10127 3.454447 CAGTGGGGATGTAATAGGTGACA 59.546 47.826 0.00 0.00 0.00 3.58
7110 10129 3.045634 TGGGGATGTAATAGGTGACAGG 58.954 50.000 0.00 0.00 0.00 4.00
7111 10130 3.046374 GGGGATGTAATAGGTGACAGGT 58.954 50.000 0.00 0.00 0.00 4.00
7112 10131 3.071167 GGGGATGTAATAGGTGACAGGTC 59.929 52.174 0.00 0.00 0.00 3.85
7113 10132 3.967987 GGGATGTAATAGGTGACAGGTCT 59.032 47.826 0.65 0.00 0.00 3.85
7114 10133 4.202264 GGGATGTAATAGGTGACAGGTCTG 60.202 50.000 0.65 0.00 0.00 3.51
7115 10134 4.202264 GGATGTAATAGGTGACAGGTCTGG 60.202 50.000 2.87 0.00 34.19 3.86
7131 10150 0.386478 CTGGCGAGCTCAAAAACAGC 60.386 55.000 15.40 6.75 37.12 4.40
7132 10151 1.100463 TGGCGAGCTCAAAAACAGCA 61.100 50.000 15.40 0.00 39.56 4.41
7154 10173 6.723977 AGCATTCCCCAAACTTTAATCAGTTA 59.276 34.615 0.00 0.00 35.87 2.24
7155 10174 7.234577 AGCATTCCCCAAACTTTAATCAGTTAA 59.765 33.333 0.00 0.00 35.87 2.01
7156 10175 7.545615 GCATTCCCCAAACTTTAATCAGTTAAG 59.454 37.037 0.00 0.00 35.87 1.85
7157 10176 8.802267 CATTCCCCAAACTTTAATCAGTTAAGA 58.198 33.333 0.00 0.00 35.87 2.10
7158 10177 8.770010 TTCCCCAAACTTTAATCAGTTAAGAA 57.230 30.769 0.00 0.00 35.87 2.52
7186 10205 8.146412 AGAGATTTGAGCATAAATAATTTGCCC 58.854 33.333 0.00 0.00 37.07 5.36
7190 10209 6.543430 TGAGCATAAATAATTTGCCCAAGT 57.457 33.333 0.00 0.00 37.07 3.16
7194 10213 8.760980 AGCATAAATAATTTGCCCAAGTAGTA 57.239 30.769 0.00 0.00 37.07 1.82
7195 10214 8.850156 AGCATAAATAATTTGCCCAAGTAGTAG 58.150 33.333 0.00 0.00 37.07 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.110442 CGCCTGTCATCTTCTCTCCT 58.890 55.000 0.00 0.00 0.00 3.69
3 4 1.965754 GCCCGCCTGTCATCTTCTCT 61.966 60.000 0.00 0.00 0.00 3.10
4 5 1.522580 GCCCGCCTGTCATCTTCTC 60.523 63.158 0.00 0.00 0.00 2.87
5 6 2.586792 GCCCGCCTGTCATCTTCT 59.413 61.111 0.00 0.00 0.00 2.85
6 7 2.514824 GGCCCGCCTGTCATCTTC 60.515 66.667 0.00 0.00 0.00 2.87
7 8 3.329889 TGGCCCGCCTGTCATCTT 61.330 61.111 7.35 0.00 36.94 2.40
8 9 3.790437 CTGGCCCGCCTGTCATCT 61.790 66.667 7.35 0.00 36.94 2.90
9 10 4.864334 CCTGGCCCGCCTGTCATC 62.864 72.222 7.35 0.00 36.94 2.92
19 20 4.365111 TGCATGTGACCCTGGCCC 62.365 66.667 0.00 0.00 0.00 5.80
20 21 3.064324 GTGCATGTGACCCTGGCC 61.064 66.667 0.00 0.00 0.00 5.36
21 22 1.462731 TTTGTGCATGTGACCCTGGC 61.463 55.000 0.00 0.00 0.00 4.85
22 23 0.599558 CTTTGTGCATGTGACCCTGG 59.400 55.000 0.00 0.00 0.00 4.45
23 24 0.599558 CCTTTGTGCATGTGACCCTG 59.400 55.000 0.00 0.00 0.00 4.45
24 25 0.478072 TCCTTTGTGCATGTGACCCT 59.522 50.000 0.00 0.00 0.00 4.34
25 26 0.598065 GTCCTTTGTGCATGTGACCC 59.402 55.000 0.00 0.00 0.00 4.46
26 27 1.001378 GTGTCCTTTGTGCATGTGACC 60.001 52.381 0.00 0.00 0.00 4.02
27 28 1.949525 AGTGTCCTTTGTGCATGTGAC 59.050 47.619 0.00 0.00 0.00 3.67
28 29 1.948834 CAGTGTCCTTTGTGCATGTGA 59.051 47.619 0.00 0.00 0.00 3.58
29 30 1.601162 GCAGTGTCCTTTGTGCATGTG 60.601 52.381 0.00 0.00 35.91 3.21
30 31 0.670162 GCAGTGTCCTTTGTGCATGT 59.330 50.000 0.00 0.00 35.91 3.21
31 32 0.038892 GGCAGTGTCCTTTGTGCATG 60.039 55.000 0.00 0.00 37.68 4.06
32 33 1.518056 CGGCAGTGTCCTTTGTGCAT 61.518 55.000 0.00 0.00 37.68 3.96
33 34 2.186160 CGGCAGTGTCCTTTGTGCA 61.186 57.895 0.00 0.00 37.68 4.57
34 35 2.639286 CGGCAGTGTCCTTTGTGC 59.361 61.111 0.00 0.00 35.07 4.57
35 36 1.227823 TCCGGCAGTGTCCTTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
36 37 1.227853 GTCCGGCAGTGTCCTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
37 38 2.317609 CGTCCGGCAGTGTCCTTTG 61.318 63.158 0.00 0.00 0.00 2.77
38 39 2.030562 CGTCCGGCAGTGTCCTTT 59.969 61.111 0.00 0.00 0.00 3.11
39 40 2.915659 TCGTCCGGCAGTGTCCTT 60.916 61.111 0.00 0.00 0.00 3.36
40 41 3.374402 CTCGTCCGGCAGTGTCCT 61.374 66.667 0.00 0.00 0.00 3.85
41 42 4.436998 CCTCGTCCGGCAGTGTCC 62.437 72.222 0.00 0.00 0.00 4.02
42 43 3.371063 TCCTCGTCCGGCAGTGTC 61.371 66.667 0.00 0.00 0.00 3.67
43 44 3.681835 GTCCTCGTCCGGCAGTGT 61.682 66.667 0.00 0.00 0.00 3.55
44 45 4.778415 CGTCCTCGTCCGGCAGTG 62.778 72.222 0.00 0.00 0.00 3.66
46 47 4.477975 GTCGTCCTCGTCCGGCAG 62.478 72.222 0.00 0.00 38.33 4.85
50 51 3.812019 CTGGGTCGTCCTCGTCCG 61.812 72.222 0.00 0.00 43.88 4.79
51 52 1.530013 TTTCTGGGTCGTCCTCGTCC 61.530 60.000 0.00 0.00 42.66 4.79
52 53 0.109226 CTTTCTGGGTCGTCCTCGTC 60.109 60.000 0.00 0.00 38.33 4.20
53 54 1.965219 CTTTCTGGGTCGTCCTCGT 59.035 57.895 0.00 0.00 38.33 4.18
54 55 1.446272 GCTTTCTGGGTCGTCCTCG 60.446 63.158 0.00 0.00 36.20 4.63
55 56 1.446272 CGCTTTCTGGGTCGTCCTC 60.446 63.158 0.00 0.00 36.20 3.71
56 57 2.156051 GACGCTTTCTGGGTCGTCCT 62.156 60.000 0.00 0.00 46.13 3.85
57 58 1.737008 GACGCTTTCTGGGTCGTCC 60.737 63.158 2.61 0.00 46.13 4.79
58 59 3.857909 GACGCTTTCTGGGTCGTC 58.142 61.111 0.00 0.00 46.13 4.20
73 74 2.251642 AAAGCGGACACAAGCGGAC 61.252 57.895 0.00 0.00 38.61 4.79
74 75 2.110213 AAAGCGGACACAAGCGGA 59.890 55.556 0.00 0.00 38.61 5.54
75 76 2.252260 CAAAGCGGACACAAGCGG 59.748 61.111 0.00 0.00 38.61 5.52
76 77 2.250939 TCCAAAGCGGACACAAGCG 61.251 57.895 0.00 0.00 39.64 4.68
77 78 3.744559 TCCAAAGCGGACACAAGC 58.255 55.556 0.00 0.00 39.64 4.01
85 86 4.576993 GGTTTGCATCCAAAGCGG 57.423 55.556 0.00 0.00 45.81 5.52
88 89 0.971386 AGCTGGGTTTGCATCCAAAG 59.029 50.000 10.02 7.91 41.32 2.77
89 90 0.968405 GAGCTGGGTTTGCATCCAAA 59.032 50.000 0.00 0.00 38.56 3.28
90 91 0.178967 TGAGCTGGGTTTGCATCCAA 60.179 50.000 0.00 0.00 31.97 3.53
91 92 0.178967 TTGAGCTGGGTTTGCATCCA 60.179 50.000 0.00 7.16 0.00 3.41
92 93 0.968405 TTTGAGCTGGGTTTGCATCC 59.032 50.000 0.00 0.00 0.00 3.51
93 94 3.323751 AATTTGAGCTGGGTTTGCATC 57.676 42.857 0.00 0.00 0.00 3.91
94 95 3.071312 TCAAATTTGAGCTGGGTTTGCAT 59.929 39.130 16.91 0.00 32.50 3.96
95 96 2.433604 TCAAATTTGAGCTGGGTTTGCA 59.566 40.909 16.91 0.00 32.50 4.08
96 97 3.062042 CTCAAATTTGAGCTGGGTTTGC 58.938 45.455 29.90 0.00 46.97 3.68
107 108 4.002982 CCTCATCGTGGACTCAAATTTGA 58.997 43.478 19.45 19.45 35.57 2.69
108 109 3.753272 ACCTCATCGTGGACTCAAATTTG 59.247 43.478 12.15 12.15 0.00 2.32
109 110 3.753272 CACCTCATCGTGGACTCAAATTT 59.247 43.478 0.00 0.00 0.00 1.82
110 111 3.338249 CACCTCATCGTGGACTCAAATT 58.662 45.455 0.00 0.00 0.00 1.82
111 112 2.977914 CACCTCATCGTGGACTCAAAT 58.022 47.619 0.00 0.00 0.00 2.32
112 113 2.455674 CACCTCATCGTGGACTCAAA 57.544 50.000 0.00 0.00 0.00 2.69
120 121 1.676678 ATCCGTCCCACCTCATCGTG 61.677 60.000 0.00 0.00 0.00 4.35
121 122 0.106369 TATCCGTCCCACCTCATCGT 60.106 55.000 0.00 0.00 0.00 3.73
122 123 1.000163 CTTATCCGTCCCACCTCATCG 60.000 57.143 0.00 0.00 0.00 3.84
123 124 2.317040 TCTTATCCGTCCCACCTCATC 58.683 52.381 0.00 0.00 0.00 2.92
124 125 2.471815 TCTTATCCGTCCCACCTCAT 57.528 50.000 0.00 0.00 0.00 2.90
125 126 2.241281 TTCTTATCCGTCCCACCTCA 57.759 50.000 0.00 0.00 0.00 3.86
126 127 3.467803 CATTTCTTATCCGTCCCACCTC 58.532 50.000 0.00 0.00 0.00 3.85
127 128 2.172717 CCATTTCTTATCCGTCCCACCT 59.827 50.000 0.00 0.00 0.00 4.00
128 129 2.171870 TCCATTTCTTATCCGTCCCACC 59.828 50.000 0.00 0.00 0.00 4.61
129 130 3.118371 AGTCCATTTCTTATCCGTCCCAC 60.118 47.826 0.00 0.00 0.00 4.61
130 131 3.112263 AGTCCATTTCTTATCCGTCCCA 58.888 45.455 0.00 0.00 0.00 4.37
131 132 3.840124 AGTCCATTTCTTATCCGTCCC 57.160 47.619 0.00 0.00 0.00 4.46
132 133 6.510879 AAAAAGTCCATTTCTTATCCGTCC 57.489 37.500 0.00 0.00 0.00 4.79
153 154 0.241481 GCGCAACCCATCCGTAAAAA 59.759 50.000 0.30 0.00 0.00 1.94
154 155 1.877367 GCGCAACCCATCCGTAAAA 59.123 52.632 0.30 0.00 0.00 1.52
155 156 2.392181 CGCGCAACCCATCCGTAAA 61.392 57.895 8.75 0.00 0.00 2.01
156 157 2.816083 CGCGCAACCCATCCGTAA 60.816 61.111 8.75 0.00 0.00 3.18
157 158 3.592856 AACGCGCAACCCATCCGTA 62.593 57.895 5.73 0.00 0.00 4.02
159 160 4.459331 CAACGCGCAACCCATCCG 62.459 66.667 5.73 0.00 0.00 4.18
160 161 4.114997 CCAACGCGCAACCCATCC 62.115 66.667 5.73 0.00 0.00 3.51
161 162 4.114997 CCCAACGCGCAACCCATC 62.115 66.667 5.73 0.00 0.00 3.51
162 163 4.966787 ACCCAACGCGCAACCCAT 62.967 61.111 5.73 0.00 0.00 4.00
166 167 4.364409 GACGACCCAACGCGCAAC 62.364 66.667 5.73 0.00 36.70 4.17
167 168 4.595538 AGACGACCCAACGCGCAA 62.596 61.111 5.73 0.00 36.70 4.85
170 171 1.289109 AAATGAGACGACCCAACGCG 61.289 55.000 3.53 3.53 36.70 6.01
171 172 0.165944 CAAATGAGACGACCCAACGC 59.834 55.000 0.00 0.00 36.70 4.84
172 173 1.508632 ACAAATGAGACGACCCAACG 58.491 50.000 0.00 0.00 39.31 4.10
173 174 2.410730 CGTACAAATGAGACGACCCAAC 59.589 50.000 0.00 0.00 38.88 3.77
174 175 2.036217 ACGTACAAATGAGACGACCCAA 59.964 45.455 15.68 0.00 39.81 4.12
175 176 1.614903 ACGTACAAATGAGACGACCCA 59.385 47.619 15.68 0.00 39.81 4.51
176 177 2.358939 ACGTACAAATGAGACGACCC 57.641 50.000 15.68 0.00 39.81 4.46
177 178 5.403466 AGTTAAACGTACAAATGAGACGACC 59.597 40.000 15.68 0.00 39.81 4.79
178 179 6.399354 GGAGTTAAACGTACAAATGAGACGAC 60.399 42.308 15.68 6.77 39.81 4.34
179 180 5.630680 GGAGTTAAACGTACAAATGAGACGA 59.369 40.000 15.68 0.00 39.81 4.20
180 181 5.403166 TGGAGTTAAACGTACAAATGAGACG 59.597 40.000 9.79 9.79 42.22 4.18
181 182 6.774354 TGGAGTTAAACGTACAAATGAGAC 57.226 37.500 0.00 0.00 0.00 3.36
182 183 7.632721 GTTTGGAGTTAAACGTACAAATGAGA 58.367 34.615 0.00 0.00 31.67 3.27
183 184 7.831750 GTTTGGAGTTAAACGTACAAATGAG 57.168 36.000 0.00 0.00 31.67 2.90
208 209 2.417586 CCCAAAACGTTCGGTTATCTCC 59.582 50.000 0.00 0.00 38.08 3.71
209 210 3.069289 ACCCAAAACGTTCGGTTATCTC 58.931 45.455 0.00 0.00 38.08 2.75
210 211 3.069289 GACCCAAAACGTTCGGTTATCT 58.931 45.455 13.91 0.00 38.08 1.98
211 212 2.159801 CGACCCAAAACGTTCGGTTATC 60.160 50.000 13.91 8.58 38.08 1.75
212 213 1.799994 CGACCCAAAACGTTCGGTTAT 59.200 47.619 13.91 1.88 38.08 1.89
213 214 1.216122 CGACCCAAAACGTTCGGTTA 58.784 50.000 13.91 0.00 38.08 2.85
214 215 2.016171 CGACCCAAAACGTTCGGTT 58.984 52.632 13.91 1.81 41.76 4.44
215 216 2.536673 GCGACCCAAAACGTTCGGT 61.537 57.895 12.90 12.90 0.00 4.69
216 217 2.250190 GCGACCCAAAACGTTCGG 59.750 61.111 0.00 5.41 0.00 4.30
217 218 2.127906 CGCGACCCAAAACGTTCG 60.128 61.111 0.00 0.03 0.00 3.95
218 219 2.426261 GCGCGACCCAAAACGTTC 60.426 61.111 12.10 0.00 0.00 3.95
219 220 4.302172 CGCGCGACCCAAAACGTT 62.302 61.111 28.94 0.00 0.00 3.99
222 223 4.676586 CACCGCGCGACCCAAAAC 62.677 66.667 34.63 0.00 0.00 2.43
232 233 2.292794 TTAGACCATCTCCACCGCGC 62.293 60.000 0.00 0.00 0.00 6.86
233 234 0.249073 CTTAGACCATCTCCACCGCG 60.249 60.000 0.00 0.00 0.00 6.46
234 235 0.105039 CCTTAGACCATCTCCACCGC 59.895 60.000 0.00 0.00 0.00 5.68
235 236 0.105039 GCCTTAGACCATCTCCACCG 59.895 60.000 0.00 0.00 0.00 4.94
236 237 1.139853 CAGCCTTAGACCATCTCCACC 59.860 57.143 0.00 0.00 0.00 4.61
237 238 1.834263 ACAGCCTTAGACCATCTCCAC 59.166 52.381 0.00 0.00 0.00 4.02
238 239 2.254152 ACAGCCTTAGACCATCTCCA 57.746 50.000 0.00 0.00 0.00 3.86
239 240 3.274288 CAAACAGCCTTAGACCATCTCC 58.726 50.000 0.00 0.00 0.00 3.71
240 241 3.944087 ACAAACAGCCTTAGACCATCTC 58.056 45.455 0.00 0.00 0.00 2.75
241 242 5.499004 TTACAAACAGCCTTAGACCATCT 57.501 39.130 0.00 0.00 0.00 2.90
242 243 5.066505 CCATTACAAACAGCCTTAGACCATC 59.933 44.000 0.00 0.00 0.00 3.51
243 244 4.949856 CCATTACAAACAGCCTTAGACCAT 59.050 41.667 0.00 0.00 0.00 3.55
244 245 4.042311 TCCATTACAAACAGCCTTAGACCA 59.958 41.667 0.00 0.00 0.00 4.02
245 246 4.585879 TCCATTACAAACAGCCTTAGACC 58.414 43.478 0.00 0.00 0.00 3.85
246 247 7.048512 ACTATCCATTACAAACAGCCTTAGAC 58.951 38.462 0.00 0.00 0.00 2.59
247 248 7.195374 ACTATCCATTACAAACAGCCTTAGA 57.805 36.000 0.00 0.00 0.00 2.10
248 249 9.209175 GATACTATCCATTACAAACAGCCTTAG 57.791 37.037 0.00 0.00 0.00 2.18
249 250 8.710239 TGATACTATCCATTACAAACAGCCTTA 58.290 33.333 0.00 0.00 0.00 2.69
250 251 7.573710 TGATACTATCCATTACAAACAGCCTT 58.426 34.615 0.00 0.00 0.00 4.35
251 252 7.136822 TGATACTATCCATTACAAACAGCCT 57.863 36.000 0.00 0.00 0.00 4.58
252 253 7.986085 ATGATACTATCCATTACAAACAGCC 57.014 36.000 0.00 0.00 0.00 4.85
282 283 8.597167 ACACATTAGTACCATATGCATGATACT 58.403 33.333 10.16 13.05 42.99 2.12
283 284 8.659491 CACACATTAGTACCATATGCATGATAC 58.341 37.037 10.16 6.43 31.94 2.24
284 285 8.592809 TCACACATTAGTACCATATGCATGATA 58.407 33.333 10.16 0.00 33.67 2.15
285 286 7.452562 TCACACATTAGTACCATATGCATGAT 58.547 34.615 10.16 0.00 33.67 2.45
286 287 6.825610 TCACACATTAGTACCATATGCATGA 58.174 36.000 10.16 0.00 33.67 3.07
287 288 7.677454 ATCACACATTAGTACCATATGCATG 57.323 36.000 10.16 0.00 0.00 4.06
288 289 8.597167 AGTATCACACATTAGTACCATATGCAT 58.403 33.333 3.79 3.79 0.00 3.96
289 290 7.962441 AGTATCACACATTAGTACCATATGCA 58.038 34.615 0.00 0.00 0.00 3.96
290 291 9.355215 GTAGTATCACACATTAGTACCATATGC 57.645 37.037 0.00 0.00 0.00 3.14
291 292 9.856488 GGTAGTATCACACATTAGTACCATATG 57.144 37.037 8.44 0.00 41.24 1.78
292 293 9.824216 AGGTAGTATCACACATTAGTACCATAT 57.176 33.333 13.62 0.00 42.86 1.78
293 294 9.293404 GAGGTAGTATCACACATTAGTACCATA 57.707 37.037 13.62 0.00 42.86 2.74
294 295 7.232941 GGAGGTAGTATCACACATTAGTACCAT 59.767 40.741 13.62 2.89 42.86 3.55
295 296 6.548622 GGAGGTAGTATCACACATTAGTACCA 59.451 42.308 13.62 0.00 42.86 3.25
296 297 6.015603 GGGAGGTAGTATCACACATTAGTACC 60.016 46.154 6.04 6.04 41.63 3.34
297 298 6.776603 AGGGAGGTAGTATCACACATTAGTAC 59.223 42.308 0.00 0.00 0.00 2.73
298 299 6.919158 AGGGAGGTAGTATCACACATTAGTA 58.081 40.000 0.00 0.00 0.00 1.82
299 300 5.778542 AGGGAGGTAGTATCACACATTAGT 58.221 41.667 0.00 0.00 0.00 2.24
300 301 7.834881 TTAGGGAGGTAGTATCACACATTAG 57.165 40.000 0.00 0.00 0.00 1.73
301 302 9.305555 GTATTAGGGAGGTAGTATCACACATTA 57.694 37.037 0.00 0.00 0.00 1.90
302 303 7.787904 TGTATTAGGGAGGTAGTATCACACATT 59.212 37.037 0.00 0.00 0.00 2.71
303 304 7.302948 TGTATTAGGGAGGTAGTATCACACAT 58.697 38.462 0.00 0.00 0.00 3.21
304 305 6.675565 TGTATTAGGGAGGTAGTATCACACA 58.324 40.000 0.00 0.00 0.00 3.72
305 306 7.778185 ATGTATTAGGGAGGTAGTATCACAC 57.222 40.000 0.00 0.00 0.00 3.82
306 307 8.676020 ACTATGTATTAGGGAGGTAGTATCACA 58.324 37.037 0.00 0.00 31.68 3.58
312 313 9.702253 CATGATACTATGTATTAGGGAGGTAGT 57.298 37.037 0.00 0.00 31.68 2.73
313 314 9.702253 ACATGATACTATGTATTAGGGAGGTAG 57.298 37.037 0.00 0.00 39.40 3.18
315 316 9.476928 GTACATGATACTATGTATTAGGGAGGT 57.523 37.037 0.00 0.00 43.27 3.85
316 317 9.702253 AGTACATGATACTATGTATTAGGGAGG 57.298 37.037 0.00 0.00 43.27 4.30
348 349 9.608617 GCATGACAATGAATAAAGTCATCTATG 57.391 33.333 0.00 0.00 45.68 2.23
349 350 9.346005 TGCATGACAATGAATAAAGTCATCTAT 57.654 29.630 0.00 0.00 45.68 1.98
350 351 8.735692 TGCATGACAATGAATAAAGTCATCTA 57.264 30.769 0.00 0.00 45.68 1.98
351 352 7.634671 TGCATGACAATGAATAAAGTCATCT 57.365 32.000 0.00 0.00 45.68 2.90
352 353 8.132995 TCATGCATGACAATGAATAAAGTCATC 58.867 33.333 25.42 1.86 45.68 2.92
354 355 7.393841 TCATGCATGACAATGAATAAAGTCA 57.606 32.000 25.42 0.00 44.16 3.41
369 370 4.405116 TGCTACTATGTGTCATGCATGA 57.595 40.909 25.42 25.42 0.00 3.07
370 371 5.449304 CAATGCTACTATGTGTCATGCATG 58.551 41.667 21.07 21.07 38.86 4.06
371 372 4.023450 GCAATGCTACTATGTGTCATGCAT 60.023 41.667 0.00 0.00 39.78 3.96
372 373 3.313249 GCAATGCTACTATGTGTCATGCA 59.687 43.478 0.00 0.00 35.34 3.96
373 374 3.313249 TGCAATGCTACTATGTGTCATGC 59.687 43.478 6.82 0.00 0.00 4.06
374 375 5.684550 ATGCAATGCTACTATGTGTCATG 57.315 39.130 6.82 0.00 0.00 3.07
375 376 6.704289 AAATGCAATGCTACTATGTGTCAT 57.296 33.333 6.82 0.00 0.00 3.06
376 377 7.806409 ATAAATGCAATGCTACTATGTGTCA 57.194 32.000 6.82 0.00 0.00 3.58
384 385 8.668353 CCGTATCATAATAAATGCAATGCTACT 58.332 33.333 6.82 0.00 0.00 2.57
385 386 8.450964 ACCGTATCATAATAAATGCAATGCTAC 58.549 33.333 6.82 0.00 0.00 3.58
386 387 8.560355 ACCGTATCATAATAAATGCAATGCTA 57.440 30.769 6.82 0.00 0.00 3.49
387 388 7.452880 ACCGTATCATAATAAATGCAATGCT 57.547 32.000 6.82 0.00 0.00 3.79
388 389 9.438291 GATACCGTATCATAATAAATGCAATGC 57.562 33.333 12.83 0.00 35.28 3.56
413 414 8.727100 AGAGATAGTTGGGTATCATACAATGA 57.273 34.615 0.00 0.00 44.55 2.57
414 415 9.784531 AAAGAGATAGTTGGGTATCATACAATG 57.215 33.333 0.00 0.00 32.57 2.82
416 417 9.213777 AGAAAGAGATAGTTGGGTATCATACAA 57.786 33.333 0.00 0.00 32.57 2.41
417 418 8.783660 AGAAAGAGATAGTTGGGTATCATACA 57.216 34.615 0.00 0.00 32.57 2.29
418 419 9.699703 GAAGAAAGAGATAGTTGGGTATCATAC 57.300 37.037 0.00 0.00 32.57 2.39
419 420 9.434275 TGAAGAAAGAGATAGTTGGGTATCATA 57.566 33.333 0.00 0.00 32.57 2.15
420 421 8.324191 TGAAGAAAGAGATAGTTGGGTATCAT 57.676 34.615 0.00 0.00 32.57 2.45
421 422 7.733773 TGAAGAAAGAGATAGTTGGGTATCA 57.266 36.000 0.00 0.00 32.57 2.15
422 423 9.620259 AAATGAAGAAAGAGATAGTTGGGTATC 57.380 33.333 0.00 0.00 0.00 2.24
425 426 9.981460 ATTAAATGAAGAAAGAGATAGTTGGGT 57.019 29.630 0.00 0.00 0.00 4.51
451 452 9.358406 AGGCAATTTTGATGATGTGATATAGAA 57.642 29.630 0.00 0.00 0.00 2.10
452 453 8.929260 AGGCAATTTTGATGATGTGATATAGA 57.071 30.769 0.00 0.00 0.00 1.98
454 455 9.797642 AGTAGGCAATTTTGATGATGTGATATA 57.202 29.630 0.00 0.00 0.00 0.86
455 456 8.701908 AGTAGGCAATTTTGATGATGTGATAT 57.298 30.769 0.00 0.00 0.00 1.63
456 457 8.523915 AAGTAGGCAATTTTGATGATGTGATA 57.476 30.769 0.00 0.00 0.00 2.15
457 458 7.414222 AAGTAGGCAATTTTGATGATGTGAT 57.586 32.000 0.00 0.00 0.00 3.06
458 459 6.839124 AAGTAGGCAATTTTGATGATGTGA 57.161 33.333 0.00 0.00 0.00 3.58
459 460 8.028354 TGTTAAGTAGGCAATTTTGATGATGTG 58.972 33.333 0.00 0.00 0.00 3.21
460 461 8.121305 TGTTAAGTAGGCAATTTTGATGATGT 57.879 30.769 0.00 0.00 0.00 3.06
461 462 9.027129 CATGTTAAGTAGGCAATTTTGATGATG 57.973 33.333 0.00 0.00 0.00 3.07
462 463 7.707893 GCATGTTAAGTAGGCAATTTTGATGAT 59.292 33.333 0.00 0.00 0.00 2.45
463 464 7.035004 GCATGTTAAGTAGGCAATTTTGATGA 58.965 34.615 0.00 0.00 0.00 2.92
464 465 6.812656 TGCATGTTAAGTAGGCAATTTTGATG 59.187 34.615 0.00 0.00 0.00 3.07
465 466 6.934056 TGCATGTTAAGTAGGCAATTTTGAT 58.066 32.000 0.00 0.00 0.00 2.57
466 467 6.338214 TGCATGTTAAGTAGGCAATTTTGA 57.662 33.333 0.00 0.00 0.00 2.69
467 468 6.812656 TCATGCATGTTAAGTAGGCAATTTTG 59.187 34.615 25.43 0.00 38.08 2.44
468 469 6.934056 TCATGCATGTTAAGTAGGCAATTTT 58.066 32.000 25.43 0.00 38.08 1.82
469 470 6.528537 TCATGCATGTTAAGTAGGCAATTT 57.471 33.333 25.43 0.00 38.08 1.82
470 471 6.720112 ATCATGCATGTTAAGTAGGCAATT 57.280 33.333 25.43 0.00 38.08 2.32
471 472 7.000472 AGTATCATGCATGTTAAGTAGGCAAT 59.000 34.615 25.43 9.99 38.08 3.56
472 473 6.356556 AGTATCATGCATGTTAAGTAGGCAA 58.643 36.000 25.43 2.66 38.08 4.52
473 474 5.928976 AGTATCATGCATGTTAAGTAGGCA 58.071 37.500 25.43 3.20 39.03 4.75
474 475 7.155328 ACTAGTATCATGCATGTTAAGTAGGC 58.845 38.462 25.43 9.14 0.00 3.93
484 485 9.526713 GGAGTATCATAACTAGTATCATGCATG 57.473 37.037 21.07 21.07 36.25 4.06
485 486 8.700051 GGGAGTATCATAACTAGTATCATGCAT 58.300 37.037 0.00 0.00 36.25 3.96
486 487 7.673926 TGGGAGTATCATAACTAGTATCATGCA 59.326 37.037 0.00 0.00 36.25 3.96
487 488 8.067751 TGGGAGTATCATAACTAGTATCATGC 57.932 38.462 0.00 0.00 36.25 4.06
494 495 9.091220 GGTTCTAATGGGAGTATCATAACTAGT 57.909 37.037 0.00 0.00 36.25 2.57
495 496 8.244802 CGGTTCTAATGGGAGTATCATAACTAG 58.755 40.741 0.00 0.00 36.25 2.57
496 497 7.177921 CCGGTTCTAATGGGAGTATCATAACTA 59.822 40.741 0.00 0.00 36.25 2.24
497 498 6.014499 CCGGTTCTAATGGGAGTATCATAACT 60.014 42.308 0.00 0.00 36.25 2.24
498 499 6.164176 CCGGTTCTAATGGGAGTATCATAAC 58.836 44.000 0.00 0.00 36.25 1.89
499 500 5.247564 CCCGGTTCTAATGGGAGTATCATAA 59.752 44.000 0.00 0.00 46.41 1.90
500 501 4.775780 CCCGGTTCTAATGGGAGTATCATA 59.224 45.833 0.00 0.00 46.41 2.15
501 502 3.583086 CCCGGTTCTAATGGGAGTATCAT 59.417 47.826 0.00 0.00 46.41 2.45
502 503 2.969950 CCCGGTTCTAATGGGAGTATCA 59.030 50.000 0.00 0.00 46.41 2.15
503 504 2.289506 GCCCGGTTCTAATGGGAGTATC 60.290 54.545 0.00 0.00 46.41 2.24
504 505 1.697982 GCCCGGTTCTAATGGGAGTAT 59.302 52.381 0.00 0.00 46.41 2.12
505 506 1.125633 GCCCGGTTCTAATGGGAGTA 58.874 55.000 0.00 0.00 46.41 2.59
506 507 0.620700 AGCCCGGTTCTAATGGGAGT 60.621 55.000 0.00 0.00 46.41 3.85
507 508 0.179045 CAGCCCGGTTCTAATGGGAG 60.179 60.000 0.00 0.00 46.41 4.30
508 509 1.632018 CCAGCCCGGTTCTAATGGGA 61.632 60.000 0.00 0.00 46.41 4.37
509 510 1.152963 CCAGCCCGGTTCTAATGGG 60.153 63.158 0.00 0.00 46.22 4.00
510 511 4.559502 CCAGCCCGGTTCTAATGG 57.440 61.111 0.00 0.00 0.00 3.16
519 520 1.014352 CGAGATAAAAACCAGCCCGG 58.986 55.000 0.00 0.00 42.50 5.73
520 521 0.377203 GCGAGATAAAAACCAGCCCG 59.623 55.000 0.00 0.00 0.00 6.13
521 522 0.738975 GGCGAGATAAAAACCAGCCC 59.261 55.000 0.00 0.00 37.32 5.19
522 523 1.401905 CTGGCGAGATAAAAACCAGCC 59.598 52.381 0.00 0.00 41.31 4.85
523 524 2.356135 TCTGGCGAGATAAAAACCAGC 58.644 47.619 0.00 0.00 46.10 4.85
525 526 3.945285 GGAATCTGGCGAGATAAAAACCA 59.055 43.478 11.98 0.00 38.03 3.67
530 531 2.035961 CGGAGGAATCTGGCGAGATAAA 59.964 50.000 11.98 0.00 38.03 1.40
532 533 1.248486 CGGAGGAATCTGGCGAGATA 58.752 55.000 11.98 0.00 38.03 1.98
558 559 3.183776 TTTTGTTTCGACGGCCGGC 62.184 57.895 31.76 28.64 39.14 6.13
559 560 1.369568 GTTTTGTTTCGACGGCCGG 60.370 57.895 31.76 13.23 39.14 6.13
560 561 1.369568 GGTTTTGTTTCGACGGCCG 60.370 57.895 26.86 26.86 40.25 6.13
561 562 1.008194 GGGTTTTGTTTCGACGGCC 60.008 57.895 0.00 0.00 0.00 6.13
573 574 0.958876 GATTCAGCGACCGGGGTTTT 60.959 55.000 6.32 0.00 0.00 2.43
587 588 0.953471 CGGCAGTTTGACCGGATTCA 60.953 55.000 9.46 0.00 45.74 2.57
729 731 3.522731 CGCGAGGAGGGAGGACAG 61.523 72.222 0.00 0.00 34.27 3.51
822 834 3.673594 CGGTACTAGTCTTTGGAGCAGTG 60.674 52.174 0.00 0.00 0.00 3.66
826 838 1.477295 AGCGGTACTAGTCTTTGGAGC 59.523 52.381 0.00 0.00 0.00 4.70
839 851 1.018910 GAGGAGAGACAGAGCGGTAC 58.981 60.000 0.00 0.00 0.00 3.34
850 862 3.260884 GCTAGCTAGCTAGAGAGGAGAGA 59.739 52.174 42.59 14.48 46.56 3.10
873 886 0.689412 GGGACAGAGAAGAGAGGGGG 60.689 65.000 0.00 0.00 0.00 5.40
874 887 0.338120 AGGGACAGAGAAGAGAGGGG 59.662 60.000 0.00 0.00 0.00 4.79
875 888 1.775385 GAGGGACAGAGAAGAGAGGG 58.225 60.000 0.00 0.00 0.00 4.30
876 889 1.388547 CGAGGGACAGAGAAGAGAGG 58.611 60.000 0.00 0.00 0.00 3.69
880 893 1.076727 TGCCGAGGGACAGAGAAGA 59.923 57.895 0.00 0.00 0.00 2.87
904 917 0.743701 GAGATGGACTGGCTGCTGTG 60.744 60.000 0.00 0.00 0.00 3.66
905 918 0.908656 AGAGATGGACTGGCTGCTGT 60.909 55.000 0.00 0.00 0.00 4.40
906 919 0.179078 GAGAGATGGACTGGCTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
907 920 0.325484 AGAGAGATGGACTGGCTGCT 60.325 55.000 0.00 0.00 0.00 4.24
908 921 0.104671 GAGAGAGATGGACTGGCTGC 59.895 60.000 0.00 0.00 0.00 5.25
909 922 1.682854 GAGAGAGAGATGGACTGGCTG 59.317 57.143 0.00 0.00 0.00 4.85
910 923 1.570501 AGAGAGAGAGATGGACTGGCT 59.429 52.381 0.00 0.00 0.00 4.75
912 925 2.175499 AGGAGAGAGAGAGATGGACTGG 59.825 54.545 0.00 0.00 0.00 4.00
917 930 1.203050 GGGGAGGAGAGAGAGAGATGG 60.203 61.905 0.00 0.00 0.00 3.51
1223 1271 3.488090 GGTCCAGCGCGTACTTGC 61.488 66.667 8.43 0.00 0.00 4.01
1611 1659 1.633774 TGGCGAAGAGGAAGTTCTCT 58.366 50.000 2.25 1.27 45.22 3.10
2239 2959 8.127327 GTCAACTAACAGCTACGTATAGATGAA 58.873 37.037 10.40 0.00 45.94 2.57
2401 3130 7.870509 TTGAGTGAGAGCAAGCAATATAAAT 57.129 32.000 0.00 0.00 0.00 1.40
2508 3239 5.438117 CGAGCATAGATTTACAGCACATTG 58.562 41.667 0.00 0.00 0.00 2.82
2548 3279 8.859090 TGTTTCATAACAGGAAATCAACAAGAT 58.141 29.630 0.00 0.00 39.29 2.40
2586 3542 9.076596 CAATAAACTCAATAAGGTTAAAGCTGC 57.923 33.333 0.00 0.00 40.52 5.25
2658 3614 7.937394 ACAAAGACTAGGTGCTTGTAAGTATTT 59.063 33.333 0.00 0.00 33.27 1.40
2747 3707 8.849168 TGGCTCCATACATACATTAAAATCAAG 58.151 33.333 0.00 0.00 0.00 3.02
2795 3755 2.688364 GGCAACGGCAAGATATAAGC 57.312 50.000 0.00 0.00 43.71 3.09
2908 3868 7.822658 TGGTAATAAGATGTGTTGCCTAAAAC 58.177 34.615 0.00 0.00 34.69 2.43
3037 4011 2.883574 CGTCGTATAAGGAAAGGCACA 58.116 47.619 0.00 0.00 0.00 4.57
3040 4014 1.859080 CAGCGTCGTATAAGGAAAGGC 59.141 52.381 0.00 0.00 0.00 4.35
3169 4144 8.893563 ACATTTCACAGGGAATAATTAAAGGA 57.106 30.769 0.00 0.00 34.91 3.36
3209 4184 8.612233 TGTACGGTACAAAATGTTAAAACAAC 57.388 30.769 18.11 0.00 37.88 3.32
3797 4947 7.054491 TCTAGCTATCAGATTACACATTGCA 57.946 36.000 0.00 0.00 0.00 4.08
3851 5001 8.462016 ACTTATGTGCAAAAATGGAGAACTATC 58.538 33.333 0.00 0.00 0.00 2.08
3981 5267 5.995897 ACTTTTACTACAAGTGTTAGGCAGG 59.004 40.000 0.00 0.00 33.04 4.85
4085 5947 6.875726 GCATTGCTCAGTATATTACATCCAGA 59.124 38.462 0.16 0.00 0.00 3.86
4197 6059 3.617263 CGGTGTATCTCAAGTTTACAGCC 59.383 47.826 8.36 3.20 39.81 4.85
4251 6113 5.602561 ACACTCCATGTAATAGCCATCTACA 59.397 40.000 0.00 0.00 40.88 2.74
4252 6114 5.928839 CACACTCCATGTAATAGCCATCTAC 59.071 44.000 0.00 0.00 40.64 2.59
4450 6314 3.254657 CCCGCAATTGTAAGAAGGAACAA 59.745 43.478 7.40 0.00 39.73 2.83
4467 6331 1.971167 GTTCAACAGGCATCCCGCA 60.971 57.895 0.00 0.00 45.17 5.69
4546 6413 5.018695 ACTTAAGAAAAACGAGATGCACG 57.981 39.130 10.09 0.00 0.00 5.34
4748 6678 6.348704 GGAGAAAATCGATTAACGGGAAAACA 60.349 38.462 11.83 0.00 42.82 2.83
4757 6687 6.753107 TCAAAGGGGAGAAAATCGATTAAC 57.247 37.500 11.83 8.58 0.00 2.01
4770 6701 7.454380 AGAGAGATATTCAGTATCAAAGGGGAG 59.546 40.741 0.00 0.00 41.43 4.30
5149 7089 5.461032 TTTTACTGCATTTCCGGTTGATT 57.539 34.783 0.00 0.00 0.00 2.57
5262 7203 4.161001 GTCTATTTTGGAACGGAGGGAGTA 59.839 45.833 0.00 0.00 0.00 2.59
5263 7204 3.055312 GTCTATTTTGGAACGGAGGGAGT 60.055 47.826 0.00 0.00 0.00 3.85
5264 7205 3.532542 GTCTATTTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5267 7208 2.928116 GTCGTCTATTTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5269 7210 2.354003 GGGTCGTCTATTTTGGAACGGA 60.354 50.000 0.00 0.00 0.00 4.69
5270 7211 2.004733 GGGTCGTCTATTTTGGAACGG 58.995 52.381 0.00 0.00 0.00 4.44
5271 7212 2.690786 TGGGTCGTCTATTTTGGAACG 58.309 47.619 0.00 0.00 0.00 3.95
5273 7214 4.360951 AGTTGGGTCGTCTATTTTGGAA 57.639 40.909 0.00 0.00 0.00 3.53
5274 7215 4.360951 AAGTTGGGTCGTCTATTTTGGA 57.639 40.909 0.00 0.00 0.00 3.53
5276 7217 8.488651 AGTATAAAGTTGGGTCGTCTATTTTG 57.511 34.615 0.00 0.00 0.00 2.44
5278 7219 9.591792 GTTAGTATAAAGTTGGGTCGTCTATTT 57.408 33.333 0.00 0.00 0.00 1.40
5279 7220 8.975295 AGTTAGTATAAAGTTGGGTCGTCTATT 58.025 33.333 0.00 0.00 0.00 1.73
5281 7222 7.944729 AGTTAGTATAAAGTTGGGTCGTCTA 57.055 36.000 0.00 0.00 0.00 2.59
5282 7223 6.847421 AGTTAGTATAAAGTTGGGTCGTCT 57.153 37.500 0.00 0.00 0.00 4.18
5283 7224 7.386025 ACAAAGTTAGTATAAAGTTGGGTCGTC 59.614 37.037 0.00 0.00 0.00 4.20
5284 7225 7.219322 ACAAAGTTAGTATAAAGTTGGGTCGT 58.781 34.615 0.00 0.00 0.00 4.34
5323 7264 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
5324 7265 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5325 7266 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5326 7267 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5327 7268 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5329 7270 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5330 7271 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5331 7272 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5332 7273 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5333 7274 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5334 7275 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5335 7276 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5336 7277 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5337 7278 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5338 7279 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
5341 7282 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
5343 7284 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
5344 7285 0.831307 ATTGCTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
5346 7287 2.434702 CCTTATTGCTACTCCCTCCGTT 59.565 50.000 0.00 0.00 0.00 4.44
5347 7288 2.040178 CCTTATTGCTACTCCCTCCGT 58.960 52.381 0.00 0.00 0.00 4.69
5348 7289 1.344763 CCCTTATTGCTACTCCCTCCG 59.655 57.143 0.00 0.00 0.00 4.63
5349 7290 2.690840 TCCCTTATTGCTACTCCCTCC 58.309 52.381 0.00 0.00 0.00 4.30
5350 7291 6.435292 TTTATCCCTTATTGCTACTCCCTC 57.565 41.667 0.00 0.00 0.00 4.30
5351 7292 5.310857 CCTTTATCCCTTATTGCTACTCCCT 59.689 44.000 0.00 0.00 0.00 4.20
5352 7293 5.309806 TCCTTTATCCCTTATTGCTACTCCC 59.690 44.000 0.00 0.00 0.00 4.30
5353 7294 6.435292 TCCTTTATCCCTTATTGCTACTCC 57.565 41.667 0.00 0.00 0.00 3.85
5387 7488 4.701651 TCCATACTGGAAATGAAAGTGCAG 59.298 41.667 0.00 0.00 45.00 4.41
5407 7508 5.808366 AGTGAGTAGAACAGAAATGTCCA 57.192 39.130 0.00 0.00 0.00 4.02
5445 7546 4.348486 TGAGGCTCTAGAACTCATCTGTT 58.652 43.478 16.72 0.00 39.30 3.16
5617 7718 9.793259 TGGAATACTTAATTCTCAAGTTGACTT 57.207 29.630 0.08 0.00 43.14 3.01
5639 7740 5.654650 ACTACACAAGTCAAACCATTTGGAA 59.345 36.000 3.01 0.00 40.98 3.53
5649 7750 5.021033 TCCCGTAAACTACACAAGTCAAA 57.979 39.130 0.00 0.00 37.50 2.69
5669 7782 7.605410 ATGCAAATCTTCATCATTTTGTTCC 57.395 32.000 0.00 0.00 32.88 3.62
5716 7829 5.602978 CCTCTACCATTTGTATCCACCTAGT 59.397 44.000 0.00 0.00 0.00 2.57
5717 7830 5.839063 TCCTCTACCATTTGTATCCACCTAG 59.161 44.000 0.00 0.00 0.00 3.02
5988 8964 2.441001 AGGGATACAATCTGAAGGCTGG 59.559 50.000 0.00 0.00 39.74 4.85
5991 8967 3.471680 GTGAGGGATACAATCTGAAGGC 58.528 50.000 0.00 0.00 39.74 4.35
6063 9039 7.509141 TTTCATCATTGCTACAAACTCTTCA 57.491 32.000 0.00 0.00 0.00 3.02
6096 9072 3.579685 GAAGCCTTTCGCCAGTCC 58.420 61.111 0.00 0.00 38.78 3.85
6216 9192 2.432628 GTGACCGGGACAAGAGCG 60.433 66.667 6.32 0.00 0.00 5.03
6244 9220 2.777114 TCTATGCTTAGTGGGCCAATGA 59.223 45.455 18.22 7.66 0.00 2.57
6246 9222 2.158608 GGTCTATGCTTAGTGGGCCAAT 60.159 50.000 12.68 12.68 0.00 3.16
6376 9353 2.739704 ATCATTCGGTGCGTGCGTG 61.740 57.895 0.00 0.00 0.00 5.34
6377 9354 2.434185 ATCATTCGGTGCGTGCGT 60.434 55.556 0.00 0.00 0.00 5.24
6378 9355 2.021793 CATCATTCGGTGCGTGCG 59.978 61.111 0.00 0.00 0.00 5.34
6497 9475 6.273071 CAATACAGTACAGACGATTCCATCA 58.727 40.000 0.00 0.00 0.00 3.07
6653 9634 4.277515 CACACATAGGGCAGCACTATAT 57.722 45.455 17.22 2.64 30.34 0.86
6694 9677 2.234661 CCTCAGACAATCTGGTGCACTA 59.765 50.000 17.98 10.29 44.39 2.74
6717 9700 2.051614 CAGCAACACAGCAGCGTG 60.052 61.111 13.64 13.64 42.81 5.34
6833 9816 2.734670 GGTTTAAACCCACGAACAAGC 58.265 47.619 24.50 0.00 43.43 4.01
6893 9906 0.539438 TGGGAGGAATGCCACACAAC 60.539 55.000 0.00 0.00 35.09 3.32
6968 9985 5.068234 TCTTTCGATTTTCTTCTCCGCTA 57.932 39.130 0.00 0.00 0.00 4.26
6985 10002 5.907945 GTCTAAACAAACCGCTTTCTCTTTC 59.092 40.000 0.00 0.00 0.00 2.62
7019 10038 5.659440 TTGGACTTTGGAATGATAAAGCC 57.341 39.130 0.00 0.00 37.40 4.35
7052 10071 5.529800 GCCCGCCTTTAATATGTTCTCTAAA 59.470 40.000 0.00 0.00 0.00 1.85
7083 10102 3.046374 ACCTATTACATCCCCACTGGTC 58.954 50.000 0.00 0.00 34.77 4.02
7084 10103 2.777692 CACCTATTACATCCCCACTGGT 59.222 50.000 0.00 0.00 34.77 4.00
7085 10104 3.045634 TCACCTATTACATCCCCACTGG 58.954 50.000 0.00 0.00 0.00 4.00
7086 10105 3.454447 TGTCACCTATTACATCCCCACTG 59.546 47.826 0.00 0.00 0.00 3.66
7092 10111 4.202264 CCAGACCTGTCACCTATTACATCC 60.202 50.000 0.00 0.00 0.00 3.51
7106 10125 1.758440 TTTGAGCTCGCCAGACCTGT 61.758 55.000 9.64 0.00 0.00 4.00
7107 10126 0.603707 TTTTGAGCTCGCCAGACCTG 60.604 55.000 9.64 0.00 0.00 4.00
7108 10127 0.108585 TTTTTGAGCTCGCCAGACCT 59.891 50.000 9.64 0.00 0.00 3.85
7110 10129 0.944386 TGTTTTTGAGCTCGCCAGAC 59.056 50.000 9.64 4.80 0.00 3.51
7111 10130 1.229428 CTGTTTTTGAGCTCGCCAGA 58.771 50.000 9.64 0.00 0.00 3.86
7112 10131 0.386478 GCTGTTTTTGAGCTCGCCAG 60.386 55.000 9.64 10.72 33.37 4.85
7113 10132 1.100463 TGCTGTTTTTGAGCTCGCCA 61.100 50.000 9.64 0.07 37.35 5.69
7114 10133 0.242017 ATGCTGTTTTTGAGCTCGCC 59.758 50.000 9.64 0.00 37.35 5.54
7115 10134 1.981533 GAATGCTGTTTTTGAGCTCGC 59.018 47.619 9.64 4.87 37.35 5.03
7131 10150 8.802267 TCTTAACTGATTAAAGTTTGGGGAATG 58.198 33.333 0.00 0.00 40.77 2.67
7132 10151 8.950007 TCTTAACTGATTAAAGTTTGGGGAAT 57.050 30.769 0.00 0.00 40.77 3.01
7162 10181 7.794041 TGGGCAAATTATTTATGCTCAAATCT 58.206 30.769 2.06 0.00 46.85 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.