Multiple sequence alignment - TraesCS1A01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G292100 chr1A 100.000 7119 0 0 1 7119 487735154 487728036 0.000000e+00 13147.0
1 TraesCS1A01G292100 chr1A 100.000 118 0 0 7375 7492 487727780 487727663 1.270000e-52 219.0
2 TraesCS1A01G292100 chr1D 92.149 4802 164 67 7 4715 388644913 388640232 0.000000e+00 6582.0
3 TraesCS1A01G292100 chr1D 95.819 1770 39 9 4877 6621 388640233 388638474 0.000000e+00 2826.0
4 TraesCS1A01G292100 chr1D 94.314 510 22 5 6614 7119 388638402 388637896 0.000000e+00 774.0
5 TraesCS1A01G292100 chr1D 94.643 168 9 0 4711 4878 9218205 9218372 2.070000e-65 261.0
6 TraesCS1A01G292100 chr1D 93.605 172 11 0 4707 4878 8796604 8796433 2.680000e-64 257.0
7 TraesCS1A01G292100 chr1D 92.179 179 14 0 4708 4886 458805547 458805369 3.470000e-63 254.0
8 TraesCS1A01G292100 chr1D 96.610 118 4 0 7375 7492 388637870 388637753 5.930000e-46 196.0
9 TraesCS1A01G292100 chr1D 100.000 29 0 0 1836 1864 569232 569260 4.000000e-03 54.7
10 TraesCS1A01G292100 chr1B 90.985 3472 162 59 7 3404 522016850 522013456 0.000000e+00 4538.0
11 TraesCS1A01G292100 chr1B 96.261 1765 38 10 4877 6621 522012078 522010322 0.000000e+00 2868.0
12 TraesCS1A01G292100 chr1B 94.489 1361 28 11 3398 4715 522013433 522012077 0.000000e+00 2054.0
13 TraesCS1A01G292100 chr1B 91.346 520 30 8 6614 7119 522010251 522009733 0.000000e+00 697.0
14 TraesCS1A01G292100 chr1B 97.479 119 2 1 7375 7492 522009704 522009586 1.270000e-47 202.0
15 TraesCS1A01G292100 chr7D 95.808 167 7 0 4712 4878 312574126 312574292 3.450000e-68 270.0
16 TraesCS1A01G292100 chr7D 95.266 169 8 0 4713 4881 23497759 23497591 1.240000e-67 268.0
17 TraesCS1A01G292100 chr7D 92.179 179 14 0 4714 4892 525720964 525721142 3.470000e-63 254.0
18 TraesCS1A01G292100 chr7D 84.404 109 15 2 5884 5991 155141113 155141006 1.030000e-18 106.0
19 TraesCS1A01G292100 chr7A 94.118 170 10 0 4709 4878 643187059 643186890 7.460000e-65 259.0
20 TraesCS1A01G292100 chr7A 97.826 46 1 0 4454 4499 77709537 77709492 6.230000e-11 80.5
21 TraesCS1A01G292100 chr5D 94.083 169 10 0 4710 4878 42949556 42949724 2.680000e-64 257.0
22 TraesCS1A01G292100 chr5D 83.333 162 15 3 5831 5981 69103534 69103374 1.010000e-28 139.0
23 TraesCS1A01G292100 chr6A 93.605 172 10 1 4713 4883 33259861 33260032 9.650000e-64 255.0
24 TraesCS1A01G292100 chr6A 95.652 46 2 0 4453 4498 226275660 226275705 2.900000e-09 75.0
25 TraesCS1A01G292100 chr5B 90.476 105 8 2 5887 5989 74996115 74996011 3.650000e-28 137.0
26 TraesCS1A01G292100 chr5B 84.404 109 15 2 5884 5991 40593108 40593001 1.030000e-18 106.0
27 TraesCS1A01G292100 chr5A 88.571 105 8 3 5889 5989 59707982 59707878 2.840000e-24 124.0
28 TraesCS1A01G292100 chr5A 90.476 63 4 2 4454 4515 659340044 659339983 1.730000e-11 82.4
29 TraesCS1A01G292100 chr5A 90.476 63 4 2 4454 4515 709195651 709195712 1.730000e-11 82.4
30 TraesCS1A01G292100 chr2A 81.208 149 24 4 5839 5985 471252609 471252755 4.750000e-22 117.0
31 TraesCS1A01G292100 chr2A 95.652 46 2 0 4453 4498 699526830 699526785 2.900000e-09 75.0
32 TraesCS1A01G292100 chrUn 85.577 104 14 1 5889 5991 85738098 85738201 2.860000e-19 108.0
33 TraesCS1A01G292100 chr2D 95.745 47 2 0 4455 4501 220563232 220563186 8.060000e-10 76.8
34 TraesCS1A01G292100 chr4B 95.745 47 1 1 4452 4498 418517475 418517430 2.900000e-09 75.0
35 TraesCS1A01G292100 chr4A 100.000 28 0 0 1836 1863 555346729 555346756 1.400000e-02 52.8
36 TraesCS1A01G292100 chr2B 100.000 28 0 0 1840 1867 770027771 770027798 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G292100 chr1A 487727663 487735154 7491 True 6683.0 13147 100.000 1 7492 2 chr1A.!!$R1 7491
1 TraesCS1A01G292100 chr1D 388637753 388644913 7160 True 2594.5 6582 94.723 7 7492 4 chr1D.!!$R3 7485
2 TraesCS1A01G292100 chr1B 522009586 522016850 7264 True 2071.8 4538 94.112 7 7492 5 chr1B.!!$R1 7485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 354 0.168128 CTTCGATCGCACAAAACCCC 59.832 55.000 11.09 0.0 0.00 4.95 F
1654 1760 0.318699 GCTTCTGTTTCCGTTTGGCC 60.319 55.000 0.00 0.0 34.14 5.36 F
2215 2321 0.107752 GCTGGAGAAGGAGCTTCAGG 60.108 60.000 0.00 0.0 41.06 3.86 F
2394 2507 1.148157 CTAGCACCGGATTGTCGCAG 61.148 60.000 9.46 0.0 0.00 5.18 F
2400 2513 1.480954 ACCGGATTGTCGCAGTTCTAT 59.519 47.619 9.46 0.0 0.00 1.98 F
2505 2618 1.811965 TGGTTGATCCAGATTTGCGTG 59.188 47.619 0.00 0.0 41.93 5.34 F
3723 3908 2.096248 TGTTGCGGTTCTTTTGTTCCT 58.904 42.857 0.00 0.0 0.00 3.36 F
4649 4856 0.987294 ACCAGAGCATTAGCACACCT 59.013 50.000 0.00 0.0 45.49 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2095 0.321653 ACTCCCGACCATTCTTGTGC 60.322 55.000 0.00 0.0 0.00 4.57 R
3285 3398 1.650314 GCCAACGGTTTGTATCCCCG 61.650 60.000 0.00 0.0 46.93 5.73 R
4096 4284 3.644884 ACTTCACCAGAGTACAGTTCG 57.355 47.619 0.00 0.0 0.00 3.95 R
4369 4557 2.102588 GTGAAGGGCGGAAGAGCTATAA 59.897 50.000 0.00 0.0 37.29 0.98 R
4523 4730 5.700832 TGTGCAATGTTACTAGAAGGTTCTG 59.299 40.000 0.00 0.0 38.19 3.02 R
4577 4784 8.864069 ATTCTAGACACATTATCTTCAGTTCG 57.136 34.615 0.00 0.0 0.00 3.95 R
4862 5069 1.343789 GCTATTACTCCCTCCGTTCCC 59.656 57.143 0.00 0.0 0.00 3.97 R
6621 6853 1.133025 CCTGCGCCTATTGAAACTTGG 59.867 52.381 4.18 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.321016 CAGCACGAACGCAATCTTTG 58.679 50.000 0.00 0.00 0.00 2.77
62 63 4.282703 TCTTTGCCTTTTACGAGGTAGAGT 59.717 41.667 0.00 0.00 39.11 3.24
63 64 5.477984 TCTTTGCCTTTTACGAGGTAGAGTA 59.522 40.000 0.00 0.00 39.11 2.59
64 65 4.708726 TGCCTTTTACGAGGTAGAGTAC 57.291 45.455 0.00 0.00 39.11 2.73
65 66 4.338879 TGCCTTTTACGAGGTAGAGTACT 58.661 43.478 0.00 0.00 39.11 2.73
103 104 7.423199 CACTTTTCTCTTGTTTTTACCCTACC 58.577 38.462 0.00 0.00 0.00 3.18
118 119 3.158676 CCCTACCATACTCCTAGTCAGC 58.841 54.545 0.00 0.00 0.00 4.26
128 130 1.517832 CTAGTCAGCCCCCGAACTG 59.482 63.158 0.00 0.00 35.15 3.16
198 200 3.630101 GCCTAATCCGACGAGACTAAAG 58.370 50.000 0.00 0.00 0.00 1.85
232 235 3.056891 CGCCATGTTTTTCAGGTGGTAAT 60.057 43.478 0.00 0.00 31.02 1.89
233 236 4.156922 CGCCATGTTTTTCAGGTGGTAATA 59.843 41.667 0.00 0.00 31.02 0.98
234 237 5.336055 CGCCATGTTTTTCAGGTGGTAATAA 60.336 40.000 0.00 0.00 31.02 1.40
252 256 4.749245 ATAAACAAACAAGTCGCAGAGG 57.251 40.909 0.00 0.00 36.95 3.69
253 257 2.325583 AACAAACAAGTCGCAGAGGA 57.674 45.000 0.00 0.00 36.95 3.71
255 259 2.851195 ACAAACAAGTCGCAGAGGATT 58.149 42.857 0.00 0.00 36.95 3.01
256 260 3.214328 ACAAACAAGTCGCAGAGGATTT 58.786 40.909 0.00 0.00 36.95 2.17
257 261 3.003689 ACAAACAAGTCGCAGAGGATTTG 59.996 43.478 0.00 0.00 38.95 2.32
259 263 2.851195 ACAAGTCGCAGAGGATTTGTT 58.149 42.857 0.00 0.00 42.08 2.83
260 264 2.808543 ACAAGTCGCAGAGGATTTGTTC 59.191 45.455 0.00 0.00 42.08 3.18
261 265 2.807967 CAAGTCGCAGAGGATTTGTTCA 59.192 45.455 0.00 0.00 36.95 3.18
262 266 3.340814 AGTCGCAGAGGATTTGTTCAT 57.659 42.857 0.00 0.00 36.95 2.57
263 267 3.265791 AGTCGCAGAGGATTTGTTCATC 58.734 45.455 0.00 0.00 36.95 2.92
264 268 2.352960 GTCGCAGAGGATTTGTTCATCC 59.647 50.000 0.00 0.00 43.04 3.51
265 269 2.027285 TCGCAGAGGATTTGTTCATCCA 60.027 45.455 2.62 0.00 44.93 3.41
266 270 2.947652 CGCAGAGGATTTGTTCATCCAT 59.052 45.455 2.62 0.00 44.93 3.41
267 271 3.003068 CGCAGAGGATTTGTTCATCCATC 59.997 47.826 2.62 0.00 44.93 3.51
268 272 3.317430 GCAGAGGATTTGTTCATCCATCC 59.683 47.826 2.62 0.00 44.93 3.51
269 273 4.529897 CAGAGGATTTGTTCATCCATCCA 58.470 43.478 2.62 0.00 44.93 3.41
270 274 5.138276 CAGAGGATTTGTTCATCCATCCAT 58.862 41.667 2.62 0.00 44.93 3.41
271 275 5.241064 CAGAGGATTTGTTCATCCATCCATC 59.759 44.000 2.62 0.00 44.93 3.51
272 276 4.477249 AGGATTTGTTCATCCATCCATCC 58.523 43.478 2.62 0.00 44.93 3.51
273 277 4.079038 AGGATTTGTTCATCCATCCATCCA 60.079 41.667 2.62 0.00 44.93 3.41
276 280 4.801521 TTGTTCATCCATCCATCCATCT 57.198 40.909 0.00 0.00 0.00 2.90
282 286 2.780414 TCCATCCATCCATCTTCCAGT 58.220 47.619 0.00 0.00 0.00 4.00
284 288 2.488528 CCATCCATCCATCTTCCAGTGG 60.489 54.545 1.40 1.40 36.82 4.00
300 304 1.152943 TGGCCCGTTTTGCACTGTA 60.153 52.632 0.00 0.00 0.00 2.74
301 305 1.169661 TGGCCCGTTTTGCACTGTAG 61.170 55.000 0.00 0.00 0.00 2.74
302 306 1.081442 GCCCGTTTTGCACTGTAGC 60.081 57.895 0.00 0.00 0.00 3.58
303 307 1.791103 GCCCGTTTTGCACTGTAGCA 61.791 55.000 0.00 1.65 43.99 3.49
331 354 0.168128 CTTCGATCGCACAAAACCCC 59.832 55.000 11.09 0.00 0.00 4.95
366 390 1.585521 CTGTAGCCCGTAACGCTCG 60.586 63.158 0.00 0.00 37.79 5.03
402 426 4.517285 AGTCCAGAACATCACGCAATTAT 58.483 39.130 0.00 0.00 0.00 1.28
403 427 4.333649 AGTCCAGAACATCACGCAATTATG 59.666 41.667 0.00 0.00 0.00 1.90
442 466 6.065976 TCATTGATCCATTCAGTAACCAGT 57.934 37.500 0.00 0.00 35.27 4.00
445 469 4.832248 TGATCCATTCAGTAACCAGTCAC 58.168 43.478 0.00 0.00 0.00 3.67
454 478 2.037251 AGTAACCAGTCACTGCACGATT 59.963 45.455 0.00 0.00 0.00 3.34
652 706 4.152964 CTGGCAGCAGCGCTAGGA 62.153 66.667 10.99 0.00 43.41 2.94
692 760 2.050714 GTGTCCGTCACGAGCGAA 60.051 61.111 0.00 0.00 37.31 4.70
694 762 2.255881 TGTCCGTCACGAGCGAAGA 61.256 57.895 0.00 0.00 0.00 2.87
695 763 1.081641 GTCCGTCACGAGCGAAGAA 60.082 57.895 0.00 0.00 0.00 2.52
696 764 1.066114 GTCCGTCACGAGCGAAGAAG 61.066 60.000 0.00 0.00 0.00 2.85
810 897 3.161450 GGATCGCAGGCCACCCTA 61.161 66.667 5.01 0.00 40.33 3.53
811 898 2.520536 GGATCGCAGGCCACCCTAT 61.521 63.158 5.01 0.00 40.33 2.57
812 899 1.004440 GATCGCAGGCCACCCTATC 60.004 63.158 5.01 0.00 40.33 2.08
813 900 1.758440 GATCGCAGGCCACCCTATCA 61.758 60.000 5.01 0.00 40.33 2.15
814 901 1.130054 ATCGCAGGCCACCCTATCAT 61.130 55.000 5.01 0.00 40.33 2.45
815 902 1.302033 CGCAGGCCACCCTATCATC 60.302 63.158 5.01 0.00 40.33 2.92
816 903 1.073897 GCAGGCCACCCTATCATCC 59.926 63.158 5.01 0.00 40.33 3.51
817 904 1.422161 GCAGGCCACCCTATCATCCT 61.422 60.000 5.01 0.00 40.33 3.24
818 905 0.399454 CAGGCCACCCTATCATCCTG 59.601 60.000 5.01 0.00 40.33 3.86
819 906 1.073897 GGCCACCCTATCATCCTGC 59.926 63.158 0.00 0.00 0.00 4.85
820 907 1.073897 GCCACCCTATCATCCTGCC 59.926 63.158 0.00 0.00 0.00 4.85
821 908 1.372683 CCACCCTATCATCCTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
822 909 1.302033 CACCCTATCATCCTGCCGC 60.302 63.158 0.00 0.00 0.00 6.53
823 910 2.047844 CCCTATCATCCTGCCGCG 60.048 66.667 0.00 0.00 0.00 6.46
824 911 2.740055 CCTATCATCCTGCCGCGC 60.740 66.667 0.00 0.00 0.00 6.86
1089 1180 3.549150 CTCGCCTCGCTTCGCTTG 61.549 66.667 0.00 0.00 0.00 4.01
1093 1184 2.743928 CCTCGCTTCGCTTGGCTT 60.744 61.111 0.00 0.00 0.00 4.35
1321 1412 1.525535 GTCTCGGCGCCTCCTACTA 60.526 63.158 26.68 0.00 0.00 1.82
1453 1544 3.470645 ACGCAGTCCACTAGTTTTTCT 57.529 42.857 0.00 0.00 29.74 2.52
1454 1545 3.805207 ACGCAGTCCACTAGTTTTTCTT 58.195 40.909 0.00 0.00 29.74 2.52
1462 1553 4.909088 TCCACTAGTTTTTCTTCCCCAGTA 59.091 41.667 0.00 0.00 0.00 2.74
1473 1564 1.748732 TCCCCAGTATGTTGAACCCA 58.251 50.000 0.00 0.00 0.00 4.51
1532 1627 0.664767 GGCGTGTGACTGACTGACTC 60.665 60.000 0.00 0.00 0.00 3.36
1533 1628 0.999228 GCGTGTGACTGACTGACTCG 60.999 60.000 0.00 0.00 0.00 4.18
1568 1667 4.331166 TCCGCGCGTCAACGAGAA 62.331 61.111 29.95 0.00 41.67 2.87
1654 1760 0.318699 GCTTCTGTTTCCGTTTGGCC 60.319 55.000 0.00 0.00 34.14 5.36
1799 1905 0.608582 AACTGGCTCTACGACGACCT 60.609 55.000 0.00 0.00 0.00 3.85
1954 2060 1.852942 CAATGCAGAGGCGTATACGT 58.147 50.000 25.04 7.63 45.35 3.57
1955 2061 1.787155 CAATGCAGAGGCGTATACGTC 59.213 52.381 21.91 21.91 45.35 4.34
1971 2077 3.872603 TCACCGCCCTGCAGTTGT 61.873 61.111 13.81 0.79 0.00 3.32
1989 2095 2.331893 TTGCCACGGCGAAATGGAG 61.332 57.895 16.62 0.00 45.51 3.86
2012 2118 1.200020 CAAGAATGGTCGGGAGTTTGC 59.800 52.381 0.00 0.00 0.00 3.68
2215 2321 0.107752 GCTGGAGAAGGAGCTTCAGG 60.108 60.000 0.00 0.00 41.06 3.86
2285 2391 3.053395 TGCTTCTGCCCTCTTCCATATTT 60.053 43.478 0.00 0.00 38.71 1.40
2297 2403 7.104939 CCTCTTCCATATTTCTCAGGATCATC 58.895 42.308 0.00 0.00 0.00 2.92
2300 2406 5.802465 TCCATATTTCTCAGGATCATCTGC 58.198 41.667 0.00 0.00 34.91 4.26
2347 2460 3.589988 ACGATTCACTCTGTGATTGGAC 58.410 45.455 1.05 0.00 42.40 4.02
2349 2462 4.462834 ACGATTCACTCTGTGATTGGACTA 59.537 41.667 1.05 0.00 42.40 2.59
2383 2496 9.477484 AAGAGATTATATTTTGTACTAGCACCG 57.523 33.333 0.00 0.00 0.00 4.94
2386 2499 8.594550 AGATTATATTTTGTACTAGCACCGGAT 58.405 33.333 9.46 0.00 0.00 4.18
2394 2507 1.148157 CTAGCACCGGATTGTCGCAG 61.148 60.000 9.46 0.00 0.00 5.18
2400 2513 1.480954 ACCGGATTGTCGCAGTTCTAT 59.519 47.619 9.46 0.00 0.00 1.98
2403 2516 3.736252 CCGGATTGTCGCAGTTCTATAAG 59.264 47.826 0.00 0.00 0.00 1.73
2505 2618 1.811965 TGGTTGATCCAGATTTGCGTG 59.188 47.619 0.00 0.00 41.93 5.34
2540 2653 5.356751 TCCAAAATTCGTTGTCCTCATATGG 59.643 40.000 2.13 0.00 0.00 2.74
2638 2751 7.444487 AGGTTTAACCATGACTTCAGAGTAAAC 59.556 37.037 17.10 0.00 41.95 2.01
2808 2921 6.588756 ACAAATGTTCAAAATGCTGCTCATAG 59.411 34.615 0.00 0.00 34.33 2.23
2882 2995 9.690913 TTCATCAAGAATATGAGGAATTTGAGT 57.309 29.630 0.78 0.00 43.01 3.41
2991 3104 3.326006 TGCTCATGTGATAGGATTCTCCC 59.674 47.826 0.00 0.00 37.19 4.30
3348 3461 9.897744 CTTACAATGAAGAGTCAAATTGCTTTA 57.102 29.630 10.62 0.00 37.30 1.85
3418 3561 5.979517 GCTGTTCATTGGCCTGTTAAATATC 59.020 40.000 3.32 0.00 0.00 1.63
3448 3592 5.842327 CAGCATTCTTTTTCATTTTTGACGC 59.158 36.000 0.00 0.00 0.00 5.19
3498 3642 7.815840 TCAACAGGAACATCTTTTCATTGTA 57.184 32.000 0.00 0.00 29.65 2.41
3534 3678 5.760253 ACGGGCAAATCTATATGAGTTTCAG 59.240 40.000 0.00 0.00 29.76 3.02
3723 3908 2.096248 TGTTGCGGTTCTTTTGTTCCT 58.904 42.857 0.00 0.00 0.00 3.36
3731 3918 5.452777 CGGTTCTTTTGTTCCTCATTTCTC 58.547 41.667 0.00 0.00 0.00 2.87
4096 4284 4.246458 GGTCTCTTGGATGTATATTCGCC 58.754 47.826 0.00 0.00 0.00 5.54
4368 4556 4.304110 CAAGTCTGCAACATGCTTGAATT 58.696 39.130 6.60 5.16 45.31 2.17
4369 4557 4.595762 AGTCTGCAACATGCTTGAATTT 57.404 36.364 6.60 0.00 45.31 1.82
4523 4730 4.010349 AGGGAGTACAATGTAAGCAAAGC 58.990 43.478 0.00 0.00 0.00 3.51
4577 4784 5.869888 CAGAACTACCTGTTTGATCTGGTAC 59.130 44.000 0.00 0.00 39.30 3.34
4644 4851 7.895759 AGAAAAATAAAACCAGAGCATTAGCA 58.104 30.769 0.00 0.00 45.49 3.49
4649 4856 0.987294 ACCAGAGCATTAGCACACCT 59.013 50.000 0.00 0.00 45.49 4.00
4688 4895 6.127338 TGAGGAGTTAATGTGATGTCTGGTAG 60.127 42.308 0.00 0.00 0.00 3.18
4705 4912 7.147897 TGTCTGGTAGTGGTAGAATTACATCTG 60.148 40.741 0.00 0.00 0.00 2.90
4714 4921 8.851145 GTGGTAGAATTACATCTGTCTGATCTA 58.149 37.037 0.00 0.00 32.05 1.98
4715 4922 8.851145 TGGTAGAATTACATCTGTCTGATCTAC 58.149 37.037 12.40 12.40 32.05 2.59
4716 4923 9.073475 GGTAGAATTACATCTGTCTGATCTACT 57.927 37.037 16.46 0.00 32.05 2.57
4718 4925 8.177119 AGAATTACATCTGTCTGATCTACTCC 57.823 38.462 0.00 0.00 32.05 3.85
4719 4926 6.909550 ATTACATCTGTCTGATCTACTCCC 57.090 41.667 0.00 0.00 32.05 4.30
4720 4927 4.534647 ACATCTGTCTGATCTACTCCCT 57.465 45.455 0.00 0.00 32.05 4.20
4721 4928 4.469657 ACATCTGTCTGATCTACTCCCTC 58.530 47.826 0.00 0.00 32.05 4.30
4722 4929 3.586470 TCTGTCTGATCTACTCCCTCC 57.414 52.381 0.00 0.00 0.00 4.30
4723 4930 2.158740 TCTGTCTGATCTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
4724 4931 1.564818 TGTCTGATCTACTCCCTCCGT 59.435 52.381 0.00 0.00 0.00 4.69
4725 4932 2.025226 TGTCTGATCTACTCCCTCCGTT 60.025 50.000 0.00 0.00 0.00 4.44
4726 4933 2.619646 GTCTGATCTACTCCCTCCGTTC 59.380 54.545 0.00 0.00 0.00 3.95
4727 4934 1.957877 CTGATCTACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
4728 4935 1.569548 TGATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
4729 4936 2.781757 TGATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
4730 4937 3.203710 TGATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
4731 4938 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4732 4939 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4733 4940 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4734 4941 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4735 4942 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
4736 4943 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
4737 4944 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4738 4945 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4739 4946 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4740 4947 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4741 4948 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4742 4949 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4743 4950 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4744 4951 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4773 4980 8.925161 AATTTCAAATGGATTACAACATACGG 57.075 30.769 0.00 0.00 0.00 4.02
4774 4981 7.689446 TTTCAAATGGATTACAACATACGGA 57.311 32.000 0.00 0.00 0.00 4.69
4775 4982 7.873719 TTCAAATGGATTACAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
4776 4983 7.258022 TCAAATGGATTACAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
4777 4984 5.689383 AATGGATTACAACATACGGATGC 57.311 39.130 7.78 0.00 36.43 3.91
4778 4985 4.143986 TGGATTACAACATACGGATGCA 57.856 40.909 7.78 0.00 36.43 3.96
4779 4986 4.713553 TGGATTACAACATACGGATGCAT 58.286 39.130 7.78 0.00 36.43 3.96
4780 4987 4.514816 TGGATTACAACATACGGATGCATG 59.485 41.667 7.78 9.99 36.43 4.06
4781 4988 4.515191 GGATTACAACATACGGATGCATGT 59.485 41.667 19.89 19.89 38.92 3.21
4782 4989 5.699001 GGATTACAACATACGGATGCATGTA 59.301 40.000 18.21 18.21 37.51 2.29
4783 4990 6.128553 GGATTACAACATACGGATGCATGTAG 60.129 42.308 20.11 0.00 38.69 2.74
4784 4991 4.400529 ACAACATACGGATGCATGTAGA 57.599 40.909 15.89 0.00 35.66 2.59
4785 4992 4.119862 ACAACATACGGATGCATGTAGAC 58.880 43.478 15.89 0.00 35.66 2.59
4786 4993 4.119136 CAACATACGGATGCATGTAGACA 58.881 43.478 7.78 0.00 36.43 3.41
4787 4994 4.607293 ACATACGGATGCATGTAGACAT 57.393 40.909 7.78 0.00 36.43 3.06
4788 4995 5.722021 ACATACGGATGCATGTAGACATA 57.278 39.130 7.78 0.00 36.43 2.29
4789 4996 5.714047 ACATACGGATGCATGTAGACATAG 58.286 41.667 7.78 0.00 36.43 2.23
4790 4997 5.243954 ACATACGGATGCATGTAGACATAGT 59.756 40.000 7.78 0.00 36.43 2.12
4791 4998 4.672587 ACGGATGCATGTAGACATAGTT 57.327 40.909 2.46 0.00 34.26 2.24
4792 4999 5.023533 ACGGATGCATGTAGACATAGTTT 57.976 39.130 2.46 0.00 34.26 2.66
4793 5000 6.156748 ACGGATGCATGTAGACATAGTTTA 57.843 37.500 2.46 0.00 34.26 2.01
4794 5001 6.216569 ACGGATGCATGTAGACATAGTTTAG 58.783 40.000 2.46 0.00 34.26 1.85
4795 5002 6.040504 ACGGATGCATGTAGACATAGTTTAGA 59.959 38.462 2.46 0.00 34.26 2.10
4796 5003 6.584184 CGGATGCATGTAGACATAGTTTAGAG 59.416 42.308 2.46 0.00 34.26 2.43
4797 5004 7.437748 GGATGCATGTAGACATAGTTTAGAGT 58.562 38.462 2.46 0.00 34.26 3.24
4798 5005 7.383572 GGATGCATGTAGACATAGTTTAGAGTG 59.616 40.741 2.46 0.00 34.26 3.51
4799 5006 7.170393 TGCATGTAGACATAGTTTAGAGTGT 57.830 36.000 0.00 0.00 34.26 3.55
4800 5007 8.288689 TGCATGTAGACATAGTTTAGAGTGTA 57.711 34.615 0.00 0.00 34.26 2.90
4801 5008 8.406297 TGCATGTAGACATAGTTTAGAGTGTAG 58.594 37.037 0.00 0.00 34.26 2.74
4802 5009 8.622157 GCATGTAGACATAGTTTAGAGTGTAGA 58.378 37.037 0.00 0.00 34.26 2.59
4818 5025 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4819 5026 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4820 5027 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4821 5028 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4822 5029 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4823 5030 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4824 5031 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4825 5032 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4826 5033 4.323417 TCACTCATTTTGCTCCGTATGTT 58.677 39.130 0.00 0.00 0.00 2.71
4827 5034 4.154015 TCACTCATTTTGCTCCGTATGTTG 59.846 41.667 0.00 0.00 0.00 3.33
4828 5035 4.072131 ACTCATTTTGCTCCGTATGTTGT 58.928 39.130 0.00 0.00 0.00 3.32
4829 5036 4.154195 ACTCATTTTGCTCCGTATGTTGTC 59.846 41.667 0.00 0.00 0.00 3.18
4830 5037 4.068599 TCATTTTGCTCCGTATGTTGTCA 58.931 39.130 0.00 0.00 0.00 3.58
4831 5038 3.889196 TTTTGCTCCGTATGTTGTCAC 57.111 42.857 0.00 0.00 0.00 3.67
4832 5039 2.831685 TTGCTCCGTATGTTGTCACT 57.168 45.000 0.00 0.00 0.00 3.41
4833 5040 2.831685 TGCTCCGTATGTTGTCACTT 57.168 45.000 0.00 0.00 0.00 3.16
4834 5041 3.945981 TGCTCCGTATGTTGTCACTTA 57.054 42.857 0.00 0.00 0.00 2.24
4835 5042 4.465632 TGCTCCGTATGTTGTCACTTAT 57.534 40.909 0.00 0.00 0.00 1.73
4836 5043 4.827692 TGCTCCGTATGTTGTCACTTATT 58.172 39.130 0.00 0.00 0.00 1.40
4837 5044 4.629634 TGCTCCGTATGTTGTCACTTATTG 59.370 41.667 0.00 0.00 0.00 1.90
4838 5045 4.868171 GCTCCGTATGTTGTCACTTATTGA 59.132 41.667 0.00 0.00 0.00 2.57
4839 5046 5.350365 GCTCCGTATGTTGTCACTTATTGAA 59.650 40.000 0.00 0.00 35.39 2.69
4840 5047 6.128391 GCTCCGTATGTTGTCACTTATTGAAA 60.128 38.462 0.00 0.00 35.39 2.69
4841 5048 7.414098 GCTCCGTATGTTGTCACTTATTGAAAT 60.414 37.037 0.00 0.00 35.39 2.17
4842 5049 7.970384 TCCGTATGTTGTCACTTATTGAAATC 58.030 34.615 0.00 0.00 35.39 2.17
4843 5050 7.822334 TCCGTATGTTGTCACTTATTGAAATCT 59.178 33.333 0.00 0.00 35.39 2.40
4844 5051 8.116753 CCGTATGTTGTCACTTATTGAAATCTC 58.883 37.037 0.00 0.00 35.39 2.75
4845 5052 8.873830 CGTATGTTGTCACTTATTGAAATCTCT 58.126 33.333 0.00 0.00 35.39 3.10
4868 5075 9.250624 CTCTAAAGAGACTTATATTTGGGAACG 57.749 37.037 0.38 0.00 44.74 3.95
4869 5076 8.202137 TCTAAAGAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
4870 5077 6.555463 AAGAGACTTATATTTGGGAACGGA 57.445 37.500 0.00 0.00 0.00 4.69
4871 5078 6.163135 AGAGACTTATATTTGGGAACGGAG 57.837 41.667 0.00 0.00 0.00 4.63
4872 5079 5.070580 AGAGACTTATATTTGGGAACGGAGG 59.929 44.000 0.00 0.00 0.00 4.30
4873 5080 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
4874 5081 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
4875 5082 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
4876 5083 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4902 5109 8.614469 AATAGCCATGTTCTTCTATTTCTAGC 57.386 34.615 0.00 0.00 30.12 3.42
4957 5164 4.583871 ACAGGTGCTCTTTCCTAATGAAG 58.416 43.478 0.00 0.00 33.63 3.02
5220 5427 6.154363 ACCTTTTTCCAGTCTTTGTTTGATGA 59.846 34.615 0.00 0.00 0.00 2.92
5230 5437 2.967459 TGTTTGATGACGATGTGCAC 57.033 45.000 10.75 10.75 0.00 4.57
5290 5497 7.920682 CACTTAAGTTGAAGCAAAATTAGGTGT 59.079 33.333 5.07 4.07 34.33 4.16
5553 5761 7.757624 GTCAACAACTGAAATACTTTCCACAAA 59.242 33.333 0.00 0.00 38.90 2.83
5691 5917 7.730784 TGGTTGGTTTTTATTCTTTGGGATCTA 59.269 33.333 0.00 0.00 0.00 1.98
5798 6024 5.649831 ACTGCAAAGATCTTTCCATAAGGAC 59.350 40.000 17.91 3.18 45.73 3.85
6285 6511 0.526211 GGGACATTTTCGCAGTTCCC 59.474 55.000 0.00 0.00 37.14 3.97
6287 6513 0.168128 GACATTTTCGCAGTTCCCCG 59.832 55.000 0.00 0.00 0.00 5.73
6289 6515 0.958382 CATTTTCGCAGTTCCCCGGA 60.958 55.000 0.73 0.00 0.00 5.14
6349 6576 2.675844 GGGTTTTTGTTTGTGTGCCTTC 59.324 45.455 0.00 0.00 0.00 3.46
6405 6632 5.636903 AGGTGAATACATACCTGCTCATT 57.363 39.130 0.00 0.00 45.30 2.57
6461 6688 2.271800 CTGGCGTTTACTCTGATGGAC 58.728 52.381 0.00 0.00 0.00 4.02
6558 6790 3.471680 CCCTATCTTTAGCACTGGAAGC 58.528 50.000 0.00 0.00 37.60 3.86
6572 6804 2.892852 CTGGAAGCTTGTTTGGATTGGA 59.107 45.455 2.10 0.00 0.00 3.53
6591 6823 3.007940 TGGAGGTATGTGTGTCTTTGGAG 59.992 47.826 0.00 0.00 0.00 3.86
6613 6845 7.039784 TGGAGGGTTTTGATATTCAGTTCAAAG 60.040 37.037 0.00 0.00 41.42 2.77
6797 7108 9.989869 GTTCTGCAATAAATTAGAAGTTACTCC 57.010 33.333 0.00 0.00 30.51 3.85
6799 7110 9.733556 TCTGCAATAAATTAGAAGTTACTCCAA 57.266 29.630 0.00 0.00 0.00 3.53
6817 7128 4.000988 TCCAAGTAAAAGCGGAATGAGAC 58.999 43.478 0.00 0.00 0.00 3.36
6845 7156 2.622064 ACTTCACCAAGCGACTTTCT 57.378 45.000 0.00 0.00 32.09 2.52
6868 7181 5.627499 TCAGCAACCAAAAAGTGCTATAG 57.373 39.130 0.00 0.00 34.16 1.31
6871 7184 6.434028 TCAGCAACCAAAAAGTGCTATAGAAT 59.566 34.615 3.21 0.00 34.16 2.40
6907 7220 2.644299 TGATGAAGAACCCTGACCATGT 59.356 45.455 0.00 0.00 0.00 3.21
7034 7351 4.826274 AAATGTCTGCCAGAGCTTAGTA 57.174 40.909 0.00 0.00 40.80 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.546972 TTGTACGCTTAATGATTGTGTTCA 57.453 33.333 0.00 0.00 0.00 3.18
1 2 6.853872 TGTTTGTACGCTTAATGATTGTGTTC 59.146 34.615 0.00 0.00 0.00 3.18
2 3 6.730175 TGTTTGTACGCTTAATGATTGTGTT 58.270 32.000 0.00 0.00 0.00 3.32
3 4 6.307031 TGTTTGTACGCTTAATGATTGTGT 57.693 33.333 0.00 0.00 0.00 3.72
4 5 5.283717 GCTGTTTGTACGCTTAATGATTGTG 59.716 40.000 0.00 0.00 0.00 3.33
5 6 5.049060 TGCTGTTTGTACGCTTAATGATTGT 60.049 36.000 0.00 0.00 0.00 2.71
44 45 4.979943 AGTACTCTACCTCGTAAAAGGC 57.020 45.455 0.00 0.00 40.34 4.35
63 64 9.833917 AAGAGAAAAGTGCTTAAAGTTAGTAGT 57.166 29.630 0.00 0.00 0.00 2.73
65 66 9.609346 ACAAGAGAAAAGTGCTTAAAGTTAGTA 57.391 29.630 0.00 0.00 0.00 1.82
87 88 6.718294 AGGAGTATGGTAGGGTAAAAACAAG 58.282 40.000 0.00 0.00 0.00 3.16
103 104 1.343069 GGGGGCTGACTAGGAGTATG 58.657 60.000 0.00 0.00 0.00 2.39
118 119 2.438434 GTCATGGCAGTTCGGGGG 60.438 66.667 0.00 0.00 0.00 5.40
128 130 0.107459 GGAGACCTCCTTGTCATGGC 60.107 60.000 8.76 0.00 46.16 4.40
183 185 4.615452 GCTTCTTTCTTTAGTCTCGTCGGA 60.615 45.833 0.00 0.00 0.00 4.55
185 187 3.298499 CGCTTCTTTCTTTAGTCTCGTCG 59.702 47.826 0.00 0.00 0.00 5.12
198 200 3.134127 ATGGCGGGCGCTTCTTTC 61.134 61.111 7.64 0.00 41.60 2.62
232 235 3.799366 TCCTCTGCGACTTGTTTGTTTA 58.201 40.909 0.00 0.00 0.00 2.01
233 236 2.639065 TCCTCTGCGACTTGTTTGTTT 58.361 42.857 0.00 0.00 0.00 2.83
234 237 2.325583 TCCTCTGCGACTTGTTTGTT 57.674 45.000 0.00 0.00 0.00 2.83
252 256 5.773680 AGATGGATGGATGGATGAACAAATC 59.226 40.000 0.00 0.00 0.00 2.17
253 257 5.712752 AGATGGATGGATGGATGAACAAAT 58.287 37.500 0.00 0.00 0.00 2.32
255 259 4.801521 AGATGGATGGATGGATGAACAA 57.198 40.909 0.00 0.00 0.00 2.83
256 260 4.446745 GGAAGATGGATGGATGGATGAACA 60.447 45.833 0.00 0.00 0.00 3.18
257 261 4.077822 GGAAGATGGATGGATGGATGAAC 58.922 47.826 0.00 0.00 0.00 3.18
259 263 3.329277 TGGAAGATGGATGGATGGATGA 58.671 45.455 0.00 0.00 0.00 2.92
260 264 3.074094 ACTGGAAGATGGATGGATGGATG 59.926 47.826 0.00 0.00 37.43 3.51
261 265 3.074094 CACTGGAAGATGGATGGATGGAT 59.926 47.826 0.00 0.00 37.43 3.41
262 266 2.440627 CACTGGAAGATGGATGGATGGA 59.559 50.000 0.00 0.00 37.43 3.41
263 267 2.488528 CCACTGGAAGATGGATGGATGG 60.489 54.545 0.00 0.00 37.32 3.51
264 268 2.860009 CCACTGGAAGATGGATGGATG 58.140 52.381 0.00 0.00 37.32 3.51
265 269 1.144503 GCCACTGGAAGATGGATGGAT 59.855 52.381 0.00 0.00 37.32 3.41
266 270 0.548031 GCCACTGGAAGATGGATGGA 59.452 55.000 0.00 0.00 37.32 3.41
267 271 0.466922 GGCCACTGGAAGATGGATGG 60.467 60.000 0.00 0.00 37.32 3.51
268 272 0.466922 GGGCCACTGGAAGATGGATG 60.467 60.000 4.39 0.00 37.32 3.51
269 273 1.925888 GGGCCACTGGAAGATGGAT 59.074 57.895 4.39 0.00 37.32 3.41
270 274 2.669133 CGGGCCACTGGAAGATGGA 61.669 63.158 4.39 0.00 37.32 3.41
271 275 2.124570 CGGGCCACTGGAAGATGG 60.125 66.667 4.39 0.00 37.92 3.51
272 276 0.609131 AAACGGGCCACTGGAAGATG 60.609 55.000 4.39 0.00 37.43 2.90
273 277 0.112412 AAAACGGGCCACTGGAAGAT 59.888 50.000 4.39 0.00 37.43 2.40
276 280 2.494530 GCAAAACGGGCCACTGGAA 61.495 57.895 4.39 0.00 0.00 3.53
282 286 1.152943 TACAGTGCAAAACGGGCCA 60.153 52.632 4.39 0.00 0.00 5.36
284 288 1.081442 GCTACAGTGCAAAACGGGC 60.081 57.895 0.00 0.00 0.00 6.13
300 304 3.436704 TGCGATCGAAGAAAGAAAATGCT 59.563 39.130 21.57 0.00 43.58 3.79
301 305 3.539954 GTGCGATCGAAGAAAGAAAATGC 59.460 43.478 21.57 0.00 43.58 3.56
302 306 4.711721 TGTGCGATCGAAGAAAGAAAATG 58.288 39.130 21.57 0.00 43.58 2.32
303 307 5.356882 TTGTGCGATCGAAGAAAGAAAAT 57.643 34.783 21.57 0.00 43.58 1.82
366 390 2.897969 TCTGGACTCTGGTTTGGTAGAC 59.102 50.000 0.00 0.00 0.00 2.59
403 427 1.377366 ATGAGTGATGCTGCTGCTGC 61.377 55.000 22.51 22.51 40.48 5.25
404 428 1.095600 AATGAGTGATGCTGCTGCTG 58.904 50.000 17.00 0.77 40.48 4.41
418 442 6.118170 ACTGGTTACTGAATGGATCAATGAG 58.882 40.000 0.00 0.00 37.67 2.90
639 693 0.104855 TACCATTCCTAGCGCTGCTG 59.895 55.000 22.90 10.07 40.10 4.41
640 694 0.390860 CTACCATTCCTAGCGCTGCT 59.609 55.000 22.90 8.09 43.41 4.24
641 695 0.389391 TCTACCATTCCTAGCGCTGC 59.611 55.000 22.90 0.00 0.00 5.25
643 697 1.542030 CGATCTACCATTCCTAGCGCT 59.458 52.381 17.26 17.26 0.00 5.92
645 699 1.402984 GCCGATCTACCATTCCTAGCG 60.403 57.143 0.00 0.00 0.00 4.26
646 700 1.066787 GGCCGATCTACCATTCCTAGC 60.067 57.143 0.00 0.00 0.00 3.42
647 701 1.202582 CGGCCGATCTACCATTCCTAG 59.797 57.143 24.07 0.00 0.00 3.02
648 702 1.202964 TCGGCCGATCTACCATTCCTA 60.203 52.381 27.28 0.00 0.00 2.94
649 703 0.469331 TCGGCCGATCTACCATTCCT 60.469 55.000 27.28 0.00 0.00 3.36
650 704 0.608640 ATCGGCCGATCTACCATTCC 59.391 55.000 34.60 0.00 0.00 3.01
691 759 1.142748 CGGATCCTCTGCGCTTCTT 59.857 57.895 9.73 0.00 0.00 2.52
692 760 2.790791 CCGGATCCTCTGCGCTTCT 61.791 63.158 9.73 0.00 37.38 2.85
694 762 2.093537 GATCCGGATCCTCTGCGCTT 62.094 60.000 30.80 0.00 37.38 4.68
695 763 2.522923 ATCCGGATCCTCTGCGCT 60.523 61.111 12.38 0.00 37.38 5.92
696 764 2.048690 GATCCGGATCCTCTGCGC 60.049 66.667 30.80 0.00 37.38 6.09
763 837 0.818040 GAGCGGGGCCGTCATTATTT 60.818 55.000 0.00 0.00 42.09 1.40
805 892 2.872388 CGCGGCAGGATGATAGGGT 61.872 63.158 0.00 0.00 39.69 4.34
806 893 2.047844 CGCGGCAGGATGATAGGG 60.048 66.667 0.00 0.00 39.69 3.53
807 894 2.740055 GCGCGGCAGGATGATAGG 60.740 66.667 8.83 0.00 39.69 2.57
808 895 3.108289 CGCGCGGCAGGATGATAG 61.108 66.667 24.84 0.00 39.69 2.08
1089 1180 2.275380 ACGGCCACCATTTGAAGCC 61.275 57.895 2.24 0.00 40.33 4.35
1090 1181 1.080569 CACGGCCACCATTTGAAGC 60.081 57.895 2.24 0.00 0.00 3.86
1091 1182 1.586028 CCACGGCCACCATTTGAAG 59.414 57.895 2.24 0.00 0.00 3.02
1092 1183 2.569354 GCCACGGCCACCATTTGAA 61.569 57.895 2.24 0.00 34.56 2.69
1093 1184 2.988684 GCCACGGCCACCATTTGA 60.989 61.111 2.24 0.00 34.56 2.69
1304 1395 1.525535 GTAGTAGGAGGCGCCGAGA 60.526 63.158 23.20 4.85 43.43 4.04
1452 1543 2.041081 TGGGTTCAACATACTGGGGAAG 59.959 50.000 0.00 0.00 0.00 3.46
1453 1544 2.066592 TGGGTTCAACATACTGGGGAA 58.933 47.619 0.00 0.00 0.00 3.97
1454 1545 1.353022 GTGGGTTCAACATACTGGGGA 59.647 52.381 0.00 0.00 0.00 4.81
1522 1617 2.085262 CACAGCGCGAGTCAGTCAG 61.085 63.158 12.10 0.00 0.00 3.51
1532 1627 0.593518 AGATCGAGATTCACAGCGCG 60.594 55.000 0.00 0.00 0.00 6.86
1533 1628 1.127701 GAGATCGAGATTCACAGCGC 58.872 55.000 0.00 0.00 0.00 5.92
1568 1667 1.328680 CGAGCTTGAAGCATATGCGTT 59.671 47.619 21.57 15.58 45.56 4.84
1608 1714 7.308435 ACAAAATTCGGATCAGAATTCAGAAC 58.692 34.615 26.99 3.85 46.55 3.01
1609 1715 7.452880 ACAAAATTCGGATCAGAATTCAGAA 57.547 32.000 26.99 0.29 46.55 3.02
1610 1716 6.183360 CGACAAAATTCGGATCAGAATTCAGA 60.183 38.462 26.99 5.51 46.55 3.27
1611 1717 5.961843 CGACAAAATTCGGATCAGAATTCAG 59.038 40.000 26.99 23.46 46.55 3.02
1612 1718 5.673568 GCGACAAAATTCGGATCAGAATTCA 60.674 40.000 26.99 1.21 46.55 2.57
1613 1719 4.730521 GCGACAAAATTCGGATCAGAATTC 59.269 41.667 26.99 16.99 46.55 2.17
1654 1760 1.002366 CCTGATCTCCAAGCGAAACG 58.998 55.000 0.00 0.00 0.00 3.60
1799 1905 4.373116 GCTCGCGGTGGAACAGGA 62.373 66.667 6.13 0.00 41.80 3.86
1848 1954 3.685214 CTTGTCCTCCTCGTCGCCG 62.685 68.421 0.00 0.00 0.00 6.46
1849 1955 2.156051 AACTTGTCCTCCTCGTCGCC 62.156 60.000 0.00 0.00 0.00 5.54
1850 1956 0.733223 GAACTTGTCCTCCTCGTCGC 60.733 60.000 0.00 0.00 0.00 5.19
1851 1957 0.596577 TGAACTTGTCCTCCTCGTCG 59.403 55.000 0.00 0.00 0.00 5.12
1852 1958 2.996621 CAATGAACTTGTCCTCCTCGTC 59.003 50.000 0.00 0.00 0.00 4.20
1933 2039 1.869754 CGTATACGCCTCTGCATTGCT 60.870 52.381 13.08 0.00 37.32 3.91
1971 2077 2.281831 TCCATTTCGCCGTGGCAA 60.282 55.556 12.06 0.00 42.06 4.52
1980 2086 2.489329 ACCATTCTTGTGCTCCATTTCG 59.511 45.455 0.00 0.00 0.00 3.46
1989 2095 0.321653 ACTCCCGACCATTCTTGTGC 60.322 55.000 0.00 0.00 0.00 4.57
2012 2118 0.539051 AGCAGACCAAGAATCCCTCG 59.461 55.000 0.00 0.00 0.00 4.63
2215 2321 1.269998 AGACAAGTACGGACTGAGCAC 59.730 52.381 0.00 0.00 35.52 4.40
2285 2391 2.405559 ACATGGCAGATGATCCTGAGA 58.594 47.619 0.00 0.00 36.29 3.27
2297 2403 3.281341 TGTTAAAGCGAAACATGGCAG 57.719 42.857 0.00 0.00 32.07 4.85
2383 2496 6.073548 CCAATCTTATAGAACTGCGACAATCC 60.074 42.308 0.00 0.00 0.00 3.01
2386 2499 5.730550 ACCAATCTTATAGAACTGCGACAA 58.269 37.500 0.00 0.00 0.00 3.18
2400 2513 9.990360 TCGTAATTCAAGCATATACCAATCTTA 57.010 29.630 0.00 0.00 0.00 2.10
2403 2516 8.015658 GGTTCGTAATTCAAGCATATACCAATC 58.984 37.037 0.00 0.00 0.00 2.67
2456 2569 4.940046 ACTACATCAGATCAACCAGCAAAG 59.060 41.667 0.00 0.00 0.00 2.77
2505 2618 6.201997 ACAACGAATTTTGGAATTACAAAGGC 59.798 34.615 15.28 8.47 40.97 4.35
2562 2675 5.639506 CAGAATGGAACCAACTAGTACACAG 59.360 44.000 0.00 0.00 0.00 3.66
2808 2921 3.242248 CGTTTTCGGACCTTCATCGATAC 59.758 47.826 0.00 0.00 39.94 2.24
2882 2995 2.373836 TCTTCCGGTGGAAAATCCTCAA 59.626 45.455 0.00 0.00 41.54 3.02
2991 3104 2.037136 CCTCAAAGCCAGTCCTGCG 61.037 63.158 0.00 0.00 0.00 5.18
3279 3392 2.750948 CGGTTTGTATCCCCGTATCAG 58.249 52.381 0.00 0.00 37.00 2.90
3285 3398 1.650314 GCCAACGGTTTGTATCCCCG 61.650 60.000 0.00 0.00 46.93 5.73
3418 3561 7.443259 AAAATGAAAAAGAATGCTGGGATTG 57.557 32.000 0.00 0.00 0.00 2.67
3498 3642 3.899395 GCCCGTAGCAATTCGGTT 58.101 55.556 3.00 0.00 44.51 4.44
3528 3672 6.107343 GGACTCCTGGTTATACTTCTGAAAC 58.893 44.000 0.00 0.00 0.00 2.78
3534 3678 4.710375 TCACTGGACTCCTGGTTATACTTC 59.290 45.833 6.89 0.00 0.00 3.01
3652 3797 8.870879 GTCAGAAGATACACAATAAGGTTACAC 58.129 37.037 0.00 0.00 0.00 2.90
3723 3908 7.376435 TCGCAAAAATATCACAGAGAAATGA 57.624 32.000 0.00 0.00 0.00 2.57
3731 3918 5.122239 TCCAGACTTCGCAAAAATATCACAG 59.878 40.000 0.00 0.00 0.00 3.66
4096 4284 3.644884 ACTTCACCAGAGTACAGTTCG 57.355 47.619 0.00 0.00 0.00 3.95
4136 4324 7.554118 TGCAAACCAAACAGAAATGGAAATTTA 59.446 29.630 0.00 0.00 39.12 1.40
4368 4556 2.769663 TGAAGGGCGGAAGAGCTATAAA 59.230 45.455 0.00 0.00 37.29 1.40
4369 4557 2.102588 GTGAAGGGCGGAAGAGCTATAA 59.897 50.000 0.00 0.00 37.29 0.98
4523 4730 5.700832 TGTGCAATGTTACTAGAAGGTTCTG 59.299 40.000 0.00 0.00 38.19 3.02
4577 4784 8.864069 ATTCTAGACACATTATCTTCAGTTCG 57.136 34.615 0.00 0.00 0.00 3.95
4644 4851 4.202367 CCTCAACTTTACTCTGGAAGGTGT 60.202 45.833 1.61 0.00 40.56 4.16
4649 4856 5.888982 AACTCCTCAACTTTACTCTGGAA 57.111 39.130 0.00 0.00 0.00 3.53
4688 4895 7.721402 AGATCAGACAGATGTAATTCTACCAC 58.279 38.462 0.00 0.00 37.00 4.16
4705 4912 2.351706 ACGGAGGGAGTAGATCAGAC 57.648 55.000 0.00 0.00 0.00 3.51
4714 4921 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4715 4922 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4716 4923 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4717 4924 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4718 4925 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4747 4954 9.364989 CCGTATGTTGTAATCCATTTGAAATTT 57.635 29.630 0.00 0.00 0.00 1.82
4748 4955 8.744652 TCCGTATGTTGTAATCCATTTGAAATT 58.255 29.630 0.00 0.00 0.00 1.82
4749 4956 8.287439 TCCGTATGTTGTAATCCATTTGAAAT 57.713 30.769 0.00 0.00 0.00 2.17
4750 4957 7.689446 TCCGTATGTTGTAATCCATTTGAAA 57.311 32.000 0.00 0.00 0.00 2.69
4751 4958 7.680827 GCATCCGTATGTTGTAATCCATTTGAA 60.681 37.037 0.00 0.00 35.38 2.69
4752 4959 6.238621 GCATCCGTATGTTGTAATCCATTTGA 60.239 38.462 0.00 0.00 35.38 2.69
4753 4960 5.914635 GCATCCGTATGTTGTAATCCATTTG 59.085 40.000 0.00 0.00 35.38 2.32
4754 4961 5.592282 TGCATCCGTATGTTGTAATCCATTT 59.408 36.000 0.00 0.00 35.38 2.32
4755 4962 5.129634 TGCATCCGTATGTTGTAATCCATT 58.870 37.500 0.00 0.00 35.38 3.16
4756 4963 4.713553 TGCATCCGTATGTTGTAATCCAT 58.286 39.130 0.00 0.00 35.38 3.41
4757 4964 4.143986 TGCATCCGTATGTTGTAATCCA 57.856 40.909 0.00 0.00 35.38 3.41
4758 4965 4.515191 ACATGCATCCGTATGTTGTAATCC 59.485 41.667 0.00 0.00 44.98 3.01
4759 4966 5.673337 ACATGCATCCGTATGTTGTAATC 57.327 39.130 0.00 0.00 44.98 1.75
4760 4967 6.423905 GTCTACATGCATCCGTATGTTGTAAT 59.576 38.462 0.00 0.00 44.98 1.89
4761 4968 5.751509 GTCTACATGCATCCGTATGTTGTAA 59.248 40.000 0.00 0.00 44.98 2.41
4762 4969 5.163499 TGTCTACATGCATCCGTATGTTGTA 60.163 40.000 0.00 0.00 44.98 2.41
4763 4970 4.119862 GTCTACATGCATCCGTATGTTGT 58.880 43.478 0.00 0.00 44.98 3.32
4764 4971 4.119136 TGTCTACATGCATCCGTATGTTG 58.881 43.478 0.00 0.85 44.98 3.33
4765 4972 4.400529 TGTCTACATGCATCCGTATGTT 57.599 40.909 0.00 0.00 44.98 2.71
4767 4974 5.714047 ACTATGTCTACATGCATCCGTATG 58.286 41.667 0.00 0.00 40.73 2.39
4768 4975 5.984695 ACTATGTCTACATGCATCCGTAT 57.015 39.130 0.00 0.00 37.15 3.06
4769 4976 5.784578 AACTATGTCTACATGCATCCGTA 57.215 39.130 0.00 0.00 37.15 4.02
4770 4977 4.672587 AACTATGTCTACATGCATCCGT 57.327 40.909 0.00 0.00 37.15 4.69
4771 4978 6.447162 TCTAAACTATGTCTACATGCATCCG 58.553 40.000 0.00 0.00 37.15 4.18
4772 4979 7.383572 CACTCTAAACTATGTCTACATGCATCC 59.616 40.741 0.00 0.00 37.15 3.51
4773 4980 7.923344 ACACTCTAAACTATGTCTACATGCATC 59.077 37.037 0.00 0.00 37.15 3.91
4774 4981 7.786030 ACACTCTAAACTATGTCTACATGCAT 58.214 34.615 5.85 0.00 37.15 3.96
4775 4982 7.170393 ACACTCTAAACTATGTCTACATGCA 57.830 36.000 5.85 0.00 37.15 3.96
4776 4983 8.622157 TCTACACTCTAAACTATGTCTACATGC 58.378 37.037 5.85 0.00 37.15 4.06
4782 4989 9.469097 AGTGAATCTACACTCTAAACTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
4796 5003 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4797 5004 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4798 5005 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4799 5006 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4800 5007 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4801 5008 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4802 5009 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4803 5010 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4804 5011 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4805 5012 4.083324 ACAACATACGGAGCAAAATGAGTG 60.083 41.667 0.00 0.00 0.00 3.51
4806 5013 4.072131 ACAACATACGGAGCAAAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
4807 5014 4.154015 TGACAACATACGGAGCAAAATGAG 59.846 41.667 0.00 0.00 0.00 2.90
4808 5015 4.068599 TGACAACATACGGAGCAAAATGA 58.931 39.130 0.00 0.00 0.00 2.57
4809 5016 4.083324 AGTGACAACATACGGAGCAAAATG 60.083 41.667 0.00 0.00 0.00 2.32
4810 5017 4.072131 AGTGACAACATACGGAGCAAAAT 58.928 39.130 0.00 0.00 0.00 1.82
4811 5018 3.472652 AGTGACAACATACGGAGCAAAA 58.527 40.909 0.00 0.00 0.00 2.44
4812 5019 3.120321 AGTGACAACATACGGAGCAAA 57.880 42.857 0.00 0.00 0.00 3.68
4813 5020 2.831685 AGTGACAACATACGGAGCAA 57.168 45.000 0.00 0.00 0.00 3.91
4814 5021 2.831685 AAGTGACAACATACGGAGCA 57.168 45.000 0.00 0.00 0.00 4.26
4815 5022 4.868171 TCAATAAGTGACAACATACGGAGC 59.132 41.667 0.00 0.00 0.00 4.70
4816 5023 6.961359 TTCAATAAGTGACAACATACGGAG 57.039 37.500 0.00 0.00 35.39 4.63
4817 5024 7.822334 AGATTTCAATAAGTGACAACATACGGA 59.178 33.333 0.00 0.00 35.39 4.69
4818 5025 7.974675 AGATTTCAATAAGTGACAACATACGG 58.025 34.615 0.00 0.00 35.39 4.02
4819 5026 8.873830 AGAGATTTCAATAAGTGACAACATACG 58.126 33.333 0.00 0.00 35.39 3.06
4842 5049 9.250624 CGTTCCCAAATATAAGTCTCTTTAGAG 57.749 37.037 0.15 0.15 43.36 2.43
4843 5050 8.202137 CCGTTCCCAAATATAAGTCTCTTTAGA 58.798 37.037 0.00 0.00 0.00 2.10
4844 5051 8.202137 TCCGTTCCCAAATATAAGTCTCTTTAG 58.798 37.037 0.00 0.00 0.00 1.85
4845 5052 8.081517 TCCGTTCCCAAATATAAGTCTCTTTA 57.918 34.615 0.00 0.00 0.00 1.85
4846 5053 6.954232 TCCGTTCCCAAATATAAGTCTCTTT 58.046 36.000 0.00 0.00 0.00 2.52
4847 5054 6.408206 CCTCCGTTCCCAAATATAAGTCTCTT 60.408 42.308 0.00 0.00 0.00 2.85
4848 5055 5.070580 CCTCCGTTCCCAAATATAAGTCTCT 59.929 44.000 0.00 0.00 0.00 3.10
4849 5056 5.298347 CCTCCGTTCCCAAATATAAGTCTC 58.702 45.833 0.00 0.00 0.00 3.36
4850 5057 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
4851 5058 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
4852 5059 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
4853 5060 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4854 5061 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4855 5062 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4856 5063 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4857 5064 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4858 5065 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
4859 5066 1.732117 TTACTCCCTCCGTTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
4860 5067 1.961133 ATTACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
4861 5068 2.674420 CTATTACTCCCTCCGTTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
4862 5069 1.343789 GCTATTACTCCCTCCGTTCCC 59.656 57.143 0.00 0.00 0.00 3.97
4863 5070 1.343789 GGCTATTACTCCCTCCGTTCC 59.656 57.143 0.00 0.00 0.00 3.62
4864 5071 2.037144 TGGCTATTACTCCCTCCGTTC 58.963 52.381 0.00 0.00 0.00 3.95
4865 5072 2.170012 TGGCTATTACTCCCTCCGTT 57.830 50.000 0.00 0.00 0.00 4.44
4866 5073 1.971357 CATGGCTATTACTCCCTCCGT 59.029 52.381 0.00 0.00 0.00 4.69
4867 5074 1.971357 ACATGGCTATTACTCCCTCCG 59.029 52.381 0.00 0.00 0.00 4.63
4868 5075 3.648545 AGAACATGGCTATTACTCCCTCC 59.351 47.826 0.00 0.00 0.00 4.30
4869 5076 4.965200 AGAACATGGCTATTACTCCCTC 57.035 45.455 0.00 0.00 0.00 4.30
4870 5077 4.971924 AGAAGAACATGGCTATTACTCCCT 59.028 41.667 0.00 0.00 0.00 4.20
4871 5078 5.297569 AGAAGAACATGGCTATTACTCCC 57.702 43.478 0.00 0.00 0.00 4.30
4872 5079 8.910351 AAATAGAAGAACATGGCTATTACTCC 57.090 34.615 0.00 0.00 33.68 3.85
4873 5080 9.771534 AGAAATAGAAGAACATGGCTATTACTC 57.228 33.333 0.00 0.00 33.68 2.59
4876 5083 9.712305 GCTAGAAATAGAAGAACATGGCTATTA 57.288 33.333 0.00 0.00 33.68 0.98
4902 5109 2.948979 AGCATCCTCAGTCTCTACTTCG 59.051 50.000 0.00 0.00 31.97 3.79
5192 5399 6.434652 TCAAACAAAGACTGGAAAAAGGTACA 59.565 34.615 0.00 0.00 0.00 2.90
5193 5400 6.859017 TCAAACAAAGACTGGAAAAAGGTAC 58.141 36.000 0.00 0.00 0.00 3.34
5194 5401 7.340743 TCATCAAACAAAGACTGGAAAAAGGTA 59.659 33.333 0.00 0.00 0.00 3.08
5195 5402 5.993748 TCAAACAAAGACTGGAAAAAGGT 57.006 34.783 0.00 0.00 0.00 3.50
5196 5403 6.476706 GTCATCAAACAAAGACTGGAAAAAGG 59.523 38.462 0.00 0.00 0.00 3.11
5220 5427 4.616953 TCATATTATGTCGTGCACATCGT 58.383 39.130 18.64 12.32 42.62 3.73
5290 5497 7.130681 ACCCAAGGATTACAATGAAAAACAA 57.869 32.000 0.00 0.00 0.00 2.83
5576 5784 4.162131 ACAGAAGGCAACAGTTTTTCCAAT 59.838 37.500 0.00 0.00 41.41 3.16
5691 5917 3.521727 ACTCAATGTACCTGAGGGAACT 58.478 45.455 20.36 2.95 43.88 3.01
5798 6024 2.983229 AGTGCCATAGAACAGCTGAAG 58.017 47.619 23.35 2.90 0.00 3.02
5852 6078 2.159179 TCACCTAGAGCATAGGCACA 57.841 50.000 13.45 0.00 44.61 4.57
6120 6346 1.961793 TCAACAAACTTGGAGTCGGG 58.038 50.000 0.00 0.00 0.00 5.14
6285 6511 2.279741 ACATGTCGTTTCATGATCCGG 58.720 47.619 18.65 0.00 45.41 5.14
6308 6535 4.122046 CCCAGTTGCAAAAGGAAGAAAAG 58.878 43.478 17.57 0.00 0.00 2.27
6405 6632 9.177608 CAGGAACCTTTTCTCATATTTACATGA 57.822 33.333 0.00 0.00 33.88 3.07
6558 6790 4.766891 ACACATACCTCCAATCCAAACAAG 59.233 41.667 0.00 0.00 0.00 3.16
6572 6804 2.305927 CCCTCCAAAGACACACATACCT 59.694 50.000 0.00 0.00 0.00 3.08
6591 6823 8.141268 TCAACTTTGAACTGAATATCAAAACCC 58.859 33.333 2.99 0.00 42.96 4.11
6613 6845 5.572896 CGCCTATTGAAACTTGGAATTCAAC 59.427 40.000 7.93 0.00 45.34 3.18
6621 6853 1.133025 CCTGCGCCTATTGAAACTTGG 59.867 52.381 4.18 0.00 0.00 3.61
6688 6999 1.133823 TGCTTCTGCCCAGTCTTTCAA 60.134 47.619 0.00 0.00 38.71 2.69
6739 7050 3.589641 TGTCTGTAAACCTTCCCCTGTA 58.410 45.455 0.00 0.00 0.00 2.74
6745 7056 5.003804 ACATCACATGTCTGTAAACCTTCC 58.996 41.667 8.48 0.00 39.92 3.46
6797 7108 3.725010 GCGTCTCATTCCGCTTTTACTTG 60.725 47.826 0.00 0.00 46.08 3.16
6799 7110 2.000447 GCGTCTCATTCCGCTTTTACT 59.000 47.619 0.00 0.00 46.08 2.24
6817 7128 2.584791 GCTTGGTGAAGTTACAATGCG 58.415 47.619 0.00 0.00 0.00 4.73
6845 7156 4.935352 ATAGCACTTTTTGGTTGCTGAA 57.065 36.364 5.58 0.00 37.13 3.02
6877 7190 7.122650 GGTCAGGGTTCTTCATCAATGATTAAA 59.877 37.037 0.00 0.00 36.56 1.52
6885 7198 3.074390 ACATGGTCAGGGTTCTTCATCAA 59.926 43.478 0.00 0.00 0.00 2.57
6891 7204 2.365293 GCAAAACATGGTCAGGGTTCTT 59.635 45.455 0.00 0.00 0.00 2.52
6907 7220 3.202829 ACGAGGGAGTAAACTGCAAAA 57.797 42.857 3.97 0.00 35.89 2.44
7016 7332 4.278310 TGTATACTAAGCTCTGGCAGACA 58.722 43.478 14.43 3.56 41.70 3.41
7030 7347 6.016192 CCCGCAGAGAAGAAAGATGTATACTA 60.016 42.308 4.17 0.00 0.00 1.82
7031 7348 5.221342 CCCGCAGAGAAGAAAGATGTATACT 60.221 44.000 4.17 0.00 0.00 2.12
7034 7351 3.742640 GCCCGCAGAGAAGAAAGATGTAT 60.743 47.826 0.00 0.00 0.00 2.29
7465 7790 2.362077 GTTTCACATGCCAGAGTGGTTT 59.638 45.455 0.00 0.00 40.46 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.