Multiple sequence alignment - TraesCS1A01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G291500 chr1A 100.000 2496 0 0 1 2496 487567690 487570185 0.000000e+00 4610.0
1 TraesCS1A01G291500 chr1A 92.832 558 38 2 807 1362 490418084 490418641 0.000000e+00 808.0
2 TraesCS1A01G291500 chr1A 90.747 562 45 6 805 1362 490759833 490760391 0.000000e+00 743.0
3 TraesCS1A01G291500 chr1A 90.681 558 42 10 813 1366 62794710 62794159 0.000000e+00 734.0
4 TraesCS1A01G291500 chr1A 88.333 600 53 11 775 1362 487604290 487604884 0.000000e+00 704.0
5 TraesCS1A01G291500 chr1A 100.000 31 0 0 2267 2297 115565774 115565744 9.640000e-05 58.4
6 TraesCS1A01G291500 chr1A 94.595 37 0 2 2261 2297 435389819 435389853 3.470000e-04 56.5
7 TraesCS1A01G291500 chr1B 87.125 1468 120 33 581 2025 521351980 521353401 0.000000e+00 1600.0
8 TraesCS1A01G291500 chr1B 90.528 739 50 10 959 1686 521740738 521741467 0.000000e+00 959.0
9 TraesCS1A01G291500 chr1B 94.474 561 27 3 2 559 30451356 30451915 0.000000e+00 861.0
10 TraesCS1A01G291500 chr1B 83.028 601 59 16 2 572 554208190 554207603 2.870000e-139 505.0
11 TraesCS1A01G291500 chr1B 83.206 393 21 21 1889 2269 521741718 521742077 4.010000e-83 318.0
12 TraesCS1A01G291500 chr1B 91.176 170 15 0 2297 2466 521354103 521354272 5.370000e-57 231.0
13 TraesCS1A01G291500 chr1B 89.571 163 10 5 2335 2496 521742501 521742657 1.510000e-47 200.0
14 TraesCS1A01G291500 chr1B 93.023 43 0 3 2265 2307 682099568 682099529 2.680000e-05 60.2
15 TraesCS1A01G291500 chr1B 97.059 34 1 0 2259 2292 543741417 543741450 9.640000e-05 58.4
16 TraesCS1A01G291500 chr1D 92.105 1140 76 6 552 1686 388024127 388025257 0.000000e+00 1594.0
17 TraesCS1A01G291500 chr1D 90.334 569 46 9 804 1368 63682310 63681747 0.000000e+00 737.0
18 TraesCS1A01G291500 chr1D 79.644 393 21 26 1889 2268 388025508 388025854 6.950000e-56 228.0
19 TraesCS1A01G291500 chr1D 79.137 278 24 18 2092 2367 388025681 388025926 7.140000e-36 161.0
20 TraesCS1A01G291500 chr1D 94.186 86 5 0 2404 2489 388025925 388026010 5.600000e-27 132.0
21 TraesCS1A01G291500 chr1D 96.970 33 1 0 2260 2292 75817773 75817805 3.470000e-04 56.5
22 TraesCS1A01G291500 chr1D 100.000 28 0 0 2265 2292 58438785 58438812 4.000000e-03 52.8
23 TraesCS1A01G291500 chr1D 96.875 32 0 1 2261 2292 114661302 114661272 4.000000e-03 52.8
24 TraesCS1A01G291500 chr1D 100.000 28 0 0 2265 2292 450582896 450582923 4.000000e-03 52.8
25 TraesCS1A01G291500 chr2B 95.699 558 23 1 3 559 258781326 258781883 0.000000e+00 896.0
26 TraesCS1A01G291500 chr2B 92.321 560 39 3 4 559 732502938 732503497 0.000000e+00 793.0
27 TraesCS1A01G291500 chr2B 97.143 35 0 1 2263 2297 514214622 514214589 9.640000e-05 58.4
28 TraesCS1A01G291500 chr3A 95.144 556 25 2 6 559 184600961 184600406 0.000000e+00 876.0
29 TraesCS1A01G291500 chr3A 84.314 102 11 4 261 358 27468238 27468138 7.350000e-16 95.3
30 TraesCS1A01G291500 chr3D 93.537 557 35 1 2 557 585562133 585562689 0.000000e+00 828.0
31 TraesCS1A01G291500 chr3D 85.362 567 49 16 4 537 604526777 604526212 7.800000e-155 556.0
32 TraesCS1A01G291500 chr3D 96.875 32 0 1 2261 2292 582047501 582047531 4.000000e-03 52.8
33 TraesCS1A01G291500 chr6B 91.754 570 39 7 804 1368 679983654 679983088 0.000000e+00 785.0
34 TraesCS1A01G291500 chr6B 83.305 587 68 11 2 560 373887201 373886617 4.760000e-142 514.0
35 TraesCS1A01G291500 chr6B 97.143 35 0 1 2263 2297 551188309 551188276 9.640000e-05 58.4
36 TraesCS1A01G291500 chr6B 97.143 35 0 1 2263 2297 551343702 551343669 9.640000e-05 58.4
37 TraesCS1A01G291500 chr6B 97.143 35 0 1 2263 2297 551443327 551443294 9.640000e-05 58.4
38 TraesCS1A01G291500 chr6B 97.143 35 0 1 2263 2297 551589806 551589773 9.640000e-05 58.4
39 TraesCS1A01G291500 chr6B 97.143 35 0 1 2263 2297 551665790 551665757 9.640000e-05 58.4
40 TraesCS1A01G291500 chr6B 97.059 34 1 0 2259 2292 632954300 632954267 9.640000e-05 58.4
41 TraesCS1A01G291500 chr7B 85.179 587 52 6 2 555 676803630 676804214 1.000000e-158 569.0
42 TraesCS1A01G291500 chr7B 85.009 587 55 4 2 555 7098230 7098816 1.300000e-157 566.0
43 TraesCS1A01G291500 chr7B 97.059 34 0 1 2264 2297 57504372 57504404 3.470000e-04 56.5
44 TraesCS1A01G291500 chr6D 93.175 337 21 2 5 339 3224602 3224266 6.200000e-136 494.0
45 TraesCS1A01G291500 chr6D 96.970 33 1 0 2260 2292 121809826 121809858 3.470000e-04 56.5
46 TraesCS1A01G291500 chr2A 95.215 209 10 0 351 559 385842105 385842313 5.150000e-87 331.0
47 TraesCS1A01G291500 chr5A 97.297 37 1 0 523 559 548800474 548800510 2.070000e-06 63.9
48 TraesCS1A01G291500 chr5A 97.059 34 0 1 2264 2297 394748076 394748044 3.470000e-04 56.5
49 TraesCS1A01G291500 chr7A 97.143 35 0 1 2263 2297 260895094 260895061 9.640000e-05 58.4
50 TraesCS1A01G291500 chr3B 97.143 35 0 1 2263 2297 790348130 790348163 9.640000e-05 58.4
51 TraesCS1A01G291500 chr4B 100.000 30 0 0 2263 2292 132165924 132165895 3.470000e-04 56.5
52 TraesCS1A01G291500 chr4B 96.970 33 0 1 2265 2297 663466682 663466651 1.000000e-03 54.7
53 TraesCS1A01G291500 chr6A 94.118 34 2 0 2259 2292 4415620 4415653 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G291500 chr1A 487567690 487570185 2495 False 4610.000000 4610 100.000000 1 2496 1 chr1A.!!$F2 2495
1 TraesCS1A01G291500 chr1A 490418084 490418641 557 False 808.000000 808 92.832000 807 1362 1 chr1A.!!$F4 555
2 TraesCS1A01G291500 chr1A 490759833 490760391 558 False 743.000000 743 90.747000 805 1362 1 chr1A.!!$F5 557
3 TraesCS1A01G291500 chr1A 62794159 62794710 551 True 734.000000 734 90.681000 813 1366 1 chr1A.!!$R1 553
4 TraesCS1A01G291500 chr1A 487604290 487604884 594 False 704.000000 704 88.333000 775 1362 1 chr1A.!!$F3 587
5 TraesCS1A01G291500 chr1B 521351980 521354272 2292 False 915.500000 1600 89.150500 581 2466 2 chr1B.!!$F3 1885
6 TraesCS1A01G291500 chr1B 30451356 30451915 559 False 861.000000 861 94.474000 2 559 1 chr1B.!!$F1 557
7 TraesCS1A01G291500 chr1B 554207603 554208190 587 True 505.000000 505 83.028000 2 572 1 chr1B.!!$R1 570
8 TraesCS1A01G291500 chr1B 521740738 521742657 1919 False 492.333333 959 87.768333 959 2496 3 chr1B.!!$F4 1537
9 TraesCS1A01G291500 chr1D 63681747 63682310 563 True 737.000000 737 90.334000 804 1368 1 chr1D.!!$R1 564
10 TraesCS1A01G291500 chr1D 388024127 388026010 1883 False 528.750000 1594 86.268000 552 2489 4 chr1D.!!$F4 1937
11 TraesCS1A01G291500 chr2B 258781326 258781883 557 False 896.000000 896 95.699000 3 559 1 chr2B.!!$F1 556
12 TraesCS1A01G291500 chr2B 732502938 732503497 559 False 793.000000 793 92.321000 4 559 1 chr2B.!!$F2 555
13 TraesCS1A01G291500 chr3A 184600406 184600961 555 True 876.000000 876 95.144000 6 559 1 chr3A.!!$R2 553
14 TraesCS1A01G291500 chr3D 585562133 585562689 556 False 828.000000 828 93.537000 2 557 1 chr3D.!!$F2 555
15 TraesCS1A01G291500 chr3D 604526212 604526777 565 True 556.000000 556 85.362000 4 537 1 chr3D.!!$R1 533
16 TraesCS1A01G291500 chr6B 679983088 679983654 566 True 785.000000 785 91.754000 804 1368 1 chr6B.!!$R8 564
17 TraesCS1A01G291500 chr6B 373886617 373887201 584 True 514.000000 514 83.305000 2 560 1 chr6B.!!$R1 558
18 TraesCS1A01G291500 chr7B 676803630 676804214 584 False 569.000000 569 85.179000 2 555 1 chr7B.!!$F3 553
19 TraesCS1A01G291500 chr7B 7098230 7098816 586 False 566.000000 566 85.009000 2 555 1 chr7B.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.173708 GCGGTACTCTCACTCCCTTG 59.826 60.0 0.00 0.00 0.00 3.61 F
882 960 0.309922 GGATCGCGATCTCAACCGTA 59.690 55.0 39.13 3.46 37.92 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1462 0.035439 ATCGGAATTTGCACGGAGGT 60.035 50.0 0.0 0.0 0.0 3.85 R
1699 1864 0.105224 TCGCAGACCCGTTCAAGAAA 59.895 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.412343 GTTTCCTTTTTGCAGGCTCCA 59.588 47.619 0.00 0.00 33.35 3.86
49 50 0.173708 GCGGTACTCTCACTCCCTTG 59.826 60.000 0.00 0.00 0.00 3.61
58 59 1.347707 CTCACTCCCTTGGTGTTGCTA 59.652 52.381 0.00 0.00 36.25 3.49
84 85 4.142093 GGTGAAAACTTGATCCATGGGATG 60.142 45.833 13.02 1.59 43.27 3.51
85 86 3.448301 TGAAAACTTGATCCATGGGATGC 59.552 43.478 13.02 0.00 43.27 3.91
349 413 6.404403 GCTTTATAATATAAAGCGGGGAAGGC 60.404 42.308 30.20 13.86 46.31 4.35
391 455 3.951663 TGTGTCGTGGAGAGATAGAGAA 58.048 45.455 0.00 0.00 0.00 2.87
407 471 8.602472 AGATAGAGAAGGCTAGAAAGAAAGAA 57.398 34.615 0.00 0.00 0.00 2.52
447 515 5.133221 AGAGAAGGTTAGAGAGAGAGATGC 58.867 45.833 0.00 0.00 0.00 3.91
459 527 4.088634 GAGAGAGATGCAGGGTGATAGAT 58.911 47.826 0.00 0.00 0.00 1.98
486 554 4.935808 GTGGGAAACGAGAGACAAATATGT 59.064 41.667 0.00 0.00 44.25 2.29
509 577 8.744568 TGTAATGTATTCATAGGTGCAATTGA 57.255 30.769 10.34 0.00 33.49 2.57
519 587 7.988737 TCATAGGTGCAATTGAATTAGAACAG 58.011 34.615 10.34 0.00 0.00 3.16
598 666 2.556144 AGAACCGAAGTTTGGGTACC 57.444 50.000 13.97 2.17 43.58 3.34
637 705 4.450757 TCACGTTCAATATCACCAGTTGTG 59.549 41.667 0.00 0.00 46.88 3.33
701 770 4.445052 TCACAGCAAAATTTGAATTCGCAG 59.555 37.500 10.26 7.28 32.29 5.18
724 797 3.335579 ACATAAAGGAGGAAACGCAGAC 58.664 45.455 0.00 0.00 0.00 3.51
823 900 2.045926 GCCACTCCAGCAATCGGT 60.046 61.111 0.00 0.00 0.00 4.69
842 919 3.083349 CCTCCCGCCAGGTCATCA 61.083 66.667 0.00 0.00 36.75 3.07
882 960 0.309922 GGATCGCGATCTCAACCGTA 59.690 55.000 39.13 3.46 37.92 4.02
893 971 1.548719 CTCAACCGTACACTCCATCCA 59.451 52.381 0.00 0.00 0.00 3.41
910 988 0.953471 CCACATCGAACGGCAGGAAA 60.953 55.000 0.00 0.00 0.00 3.13
1267 1367 1.511305 CGTCACCTACACCGAGCAT 59.489 57.895 0.00 0.00 0.00 3.79
1362 1462 2.829003 CGGCTAGGCTCGTCCTCA 60.829 66.667 15.11 0.00 43.20 3.86
1386 1486 0.798009 CGTGCAAATTCCGATGTGCC 60.798 55.000 0.00 0.00 44.45 5.01
1392 1492 2.554032 CAAATTCCGATGTGCCTATCCC 59.446 50.000 0.00 0.00 0.00 3.85
1402 1502 4.256180 CCTATCCCCCTGTGCGCC 62.256 72.222 4.18 0.00 0.00 6.53
1417 1517 2.102553 GCCGTAGTCTCGCTGTCC 59.897 66.667 0.00 0.00 0.00 4.02
1438 1538 6.205464 TGTCCAGAAAACTTAGCTGAAATGAG 59.795 38.462 0.00 0.00 0.00 2.90
1554 1665 3.296322 ACGCAAATATTGTGGTTGTGG 57.704 42.857 8.34 0.00 45.14 4.17
1555 1666 2.625790 ACGCAAATATTGTGGTTGTGGT 59.374 40.909 8.34 0.00 45.14 4.16
1556 1667 3.068873 ACGCAAATATTGTGGTTGTGGTT 59.931 39.130 8.34 0.00 45.14 3.67
1557 1668 4.054671 CGCAAATATTGTGGTTGTGGTTT 58.945 39.130 0.00 0.00 37.51 3.27
1558 1669 4.509600 CGCAAATATTGTGGTTGTGGTTTT 59.490 37.500 0.00 0.00 37.51 2.43
1559 1670 5.557893 CGCAAATATTGTGGTTGTGGTTTTG 60.558 40.000 0.00 0.00 37.51 2.44
1560 1671 5.746539 CAAATATTGTGGTTGTGGTTTTGC 58.253 37.500 0.00 0.00 0.00 3.68
1602 1716 1.064803 GTTGCAATTGTGGTGTGTCGA 59.935 47.619 0.59 0.00 0.00 4.20
1616 1730 4.304110 GTGTGTCGATTGTTCCTTCTGTA 58.696 43.478 0.00 0.00 0.00 2.74
1618 1732 3.368236 GTGTCGATTGTTCCTTCTGTAGC 59.632 47.826 0.00 0.00 0.00 3.58
1626 1740 2.586258 TCCTTCTGTAGCGCAAGATC 57.414 50.000 11.47 0.00 43.02 2.75
1644 1758 6.344500 CAAGATCTGGTTGCTAGTACTGAAT 58.656 40.000 5.39 0.00 0.00 2.57
1681 1795 3.686241 TCCAGAATTCAGTCTGCATTTCG 59.314 43.478 8.44 0.00 43.18 3.46
1699 1864 3.627395 TCGGACATTGTAGATTTGCCT 57.373 42.857 0.00 0.00 0.00 4.75
1726 1929 2.338984 GGGTCTGCGACGTGAACT 59.661 61.111 0.00 0.00 32.65 3.01
1759 1970 2.065512 TGAATCATGTGGTTCGTGTCG 58.934 47.619 1.93 0.00 34.87 4.35
1783 1994 0.533951 CCAGGAAAGGCCATTTGCTC 59.466 55.000 15.37 0.00 45.51 4.26
1790 2001 4.442052 GGAAAGGCCATTTGCTCTATTTCC 60.442 45.833 5.01 7.81 39.10 3.13
1791 2002 3.386932 AGGCCATTTGCTCTATTTCCA 57.613 42.857 5.01 0.00 40.92 3.53
1792 2003 3.711863 AGGCCATTTGCTCTATTTCCAA 58.288 40.909 5.01 0.00 40.92 3.53
1794 2005 4.081476 AGGCCATTTGCTCTATTTCCAAAC 60.081 41.667 5.01 0.00 40.92 2.93
1797 2008 5.521372 GCCATTTGCTCTATTTCCAAACATC 59.479 40.000 0.00 0.00 36.87 3.06
1816 2034 6.409524 ACATCACTGTGGAAATGTTTTCAT 57.590 33.333 8.11 0.00 36.76 2.57
1840 2062 9.917129 CATTGGATGAAATATTAGCAGCAATAA 57.083 29.630 0.00 0.00 0.00 1.40
1852 2074 7.650834 TTAGCAGCAATAACATTTTCAAACC 57.349 32.000 0.00 0.00 0.00 3.27
1853 2075 5.857268 AGCAGCAATAACATTTTCAAACCT 58.143 33.333 0.00 0.00 0.00 3.50
1854 2076 6.991938 AGCAGCAATAACATTTTCAAACCTA 58.008 32.000 0.00 0.00 0.00 3.08
1855 2077 7.092716 AGCAGCAATAACATTTTCAAACCTAG 58.907 34.615 0.00 0.00 0.00 3.02
1856 2078 6.311200 GCAGCAATAACATTTTCAAACCTAGG 59.689 38.462 7.41 7.41 0.00 3.02
1858 2080 8.087750 CAGCAATAACATTTTCAAACCTAGGAA 58.912 33.333 17.98 0.00 0.00 3.36
1861 2083 9.191995 CAATAACATTTTCAAACCTAGGAACAC 57.808 33.333 17.98 0.00 0.00 3.32
1862 2084 8.706322 ATAACATTTTCAAACCTAGGAACACT 57.294 30.769 17.98 0.00 0.00 3.55
1863 2085 7.418337 AACATTTTCAAACCTAGGAACACTT 57.582 32.000 17.98 0.00 0.00 3.16
1864 2086 7.039313 ACATTTTCAAACCTAGGAACACTTC 57.961 36.000 17.98 0.00 0.00 3.01
1865 2087 6.605594 ACATTTTCAAACCTAGGAACACTTCA 59.394 34.615 17.98 0.00 0.00 3.02
1866 2088 7.287696 ACATTTTCAAACCTAGGAACACTTCAT 59.712 33.333 17.98 0.00 0.00 2.57
1867 2089 6.877611 TTTCAAACCTAGGAACACTTCATC 57.122 37.500 17.98 0.00 0.00 2.92
1868 2090 5.825593 TCAAACCTAGGAACACTTCATCT 57.174 39.130 17.98 0.00 0.00 2.90
1869 2091 6.187727 TCAAACCTAGGAACACTTCATCTT 57.812 37.500 17.98 0.00 0.00 2.40
1870 2092 5.997746 TCAAACCTAGGAACACTTCATCTTG 59.002 40.000 17.98 0.00 0.00 3.02
1871 2093 4.559862 ACCTAGGAACACTTCATCTTGG 57.440 45.455 17.98 0.00 0.00 3.61
1872 2094 3.910627 ACCTAGGAACACTTCATCTTGGT 59.089 43.478 17.98 0.00 0.00 3.67
1873 2095 4.351111 ACCTAGGAACACTTCATCTTGGTT 59.649 41.667 17.98 0.00 0.00 3.67
1874 2096 5.163088 ACCTAGGAACACTTCATCTTGGTTT 60.163 40.000 17.98 0.00 0.00 3.27
1875 2097 5.770162 CCTAGGAACACTTCATCTTGGTTTT 59.230 40.000 1.05 0.00 0.00 2.43
1876 2098 5.774498 AGGAACACTTCATCTTGGTTTTC 57.226 39.130 0.00 0.00 0.00 2.29
1877 2099 4.275936 AGGAACACTTCATCTTGGTTTTCG 59.724 41.667 0.00 0.00 0.00 3.46
1878 2100 4.036380 GGAACACTTCATCTTGGTTTTCGT 59.964 41.667 0.00 0.00 0.00 3.85
1879 2101 5.449999 GGAACACTTCATCTTGGTTTTCGTT 60.450 40.000 0.00 0.00 0.00 3.85
1880 2102 4.920376 ACACTTCATCTTGGTTTTCGTTG 58.080 39.130 0.00 0.00 0.00 4.10
1881 2103 4.202010 ACACTTCATCTTGGTTTTCGTTGG 60.202 41.667 0.00 0.00 0.00 3.77
1882 2104 4.036262 CACTTCATCTTGGTTTTCGTTGGA 59.964 41.667 0.00 0.00 0.00 3.53
1883 2105 4.036380 ACTTCATCTTGGTTTTCGTTGGAC 59.964 41.667 0.00 0.00 0.00 4.02
1884 2106 2.546368 TCATCTTGGTTTTCGTTGGACG 59.454 45.455 0.00 0.00 44.19 4.79
1885 2107 2.027003 TCTTGGTTTTCGTTGGACGT 57.973 45.000 0.00 0.00 43.14 4.34
1886 2108 2.358015 TCTTGGTTTTCGTTGGACGTT 58.642 42.857 0.00 0.00 43.14 3.99
1887 2109 3.529533 TCTTGGTTTTCGTTGGACGTTA 58.470 40.909 0.00 0.00 43.14 3.18
1888 2110 3.937706 TCTTGGTTTTCGTTGGACGTTAA 59.062 39.130 0.00 0.00 43.14 2.01
1889 2111 3.948196 TGGTTTTCGTTGGACGTTAAG 57.052 42.857 0.00 0.00 43.14 1.85
1890 2112 2.031930 TGGTTTTCGTTGGACGTTAAGC 59.968 45.455 0.00 6.50 43.14 3.09
1915 2137 7.875041 GCATACCACTGTGATGTTCTAGAATAT 59.125 37.037 13.95 13.95 0.00 1.28
1923 2145 9.462174 CTGTGATGTTCTAGAATATGAGAGTTC 57.538 37.037 18.32 4.90 0.00 3.01
1926 2148 8.971073 TGATGTTCTAGAATATGAGAGTTCACA 58.029 33.333 18.32 3.71 35.83 3.58
1955 2177 2.292828 AACCTGGGAACATCAGTTGG 57.707 50.000 0.00 0.00 41.51 3.77
1967 2195 3.436704 ACATCAGTTGGTTACTTGATGCG 59.563 43.478 11.91 0.00 41.27 4.73
1974 2202 3.403968 TGGTTACTTGATGCGCTTACAA 58.596 40.909 9.73 11.26 0.00 2.41
2034 2268 8.832521 CATTAGCAGGTTTATTTCCGTGTATAA 58.167 33.333 0.00 0.00 0.00 0.98
2067 2305 0.254178 CATGAGGGGAGGTGTCAAGG 59.746 60.000 0.00 0.00 0.00 3.61
2068 2306 0.916358 ATGAGGGGAGGTGTCAAGGG 60.916 60.000 0.00 0.00 0.00 3.95
2069 2307 1.229529 GAGGGGAGGTGTCAAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
2070 2308 0.840722 GAGGGGAGGTGTCAAGGGAA 60.841 60.000 0.00 0.00 0.00 3.97
2071 2309 1.134438 AGGGGAGGTGTCAAGGGAAC 61.134 60.000 0.00 0.00 0.00 3.62
2074 2312 0.765510 GGAGGTGTCAAGGGAACAGT 59.234 55.000 0.00 0.00 0.00 3.55
2075 2313 1.543429 GGAGGTGTCAAGGGAACAGTG 60.543 57.143 0.00 0.00 0.00 3.66
2077 2315 1.843851 AGGTGTCAAGGGAACAGTGAA 59.156 47.619 0.00 0.00 0.00 3.18
2078 2316 2.443255 AGGTGTCAAGGGAACAGTGAAT 59.557 45.455 0.00 0.00 0.00 2.57
2080 2318 4.104102 AGGTGTCAAGGGAACAGTGAATAA 59.896 41.667 0.00 0.00 0.00 1.40
2082 2320 4.215613 GTGTCAAGGGAACAGTGAATAACC 59.784 45.833 0.00 0.00 0.00 2.85
2083 2321 4.104102 TGTCAAGGGAACAGTGAATAACCT 59.896 41.667 0.00 0.00 0.00 3.50
2106 2819 0.166814 GCGAGCAATGACCTGTGAAC 59.833 55.000 0.00 0.00 0.00 3.18
2108 2821 0.798776 GAGCAATGACCTGTGAACCG 59.201 55.000 0.00 0.00 0.00 4.44
2121 2834 5.109903 CCTGTGAACCGTAGAATCCTAAAG 58.890 45.833 0.00 0.00 0.00 1.85
2126 2839 6.530887 GTGAACCGTAGAATCCTAAAGAAGTC 59.469 42.308 0.00 0.00 0.00 3.01
2158 2871 1.753073 GCAATGGAAATGGGAGGACTG 59.247 52.381 0.00 0.00 0.00 3.51
2163 2876 1.065126 GGAAATGGGAGGACTGGTGAG 60.065 57.143 0.00 0.00 0.00 3.51
2213 2928 5.241506 TCTTCAGATGTCCAAAATGGTTCAC 59.758 40.000 0.00 0.00 39.03 3.18
2257 2972 3.669251 AGTCTGTGCTTAGAAGACACC 57.331 47.619 11.00 1.61 42.28 4.16
2268 2983 7.701501 GTGCTTAGAAGACACCTTACATAGTAC 59.298 40.741 0.00 0.00 31.62 2.73
2269 2984 7.614583 TGCTTAGAAGACACCTTACATAGTACT 59.385 37.037 0.00 0.00 31.62 2.73
2270 2985 8.130469 GCTTAGAAGACACCTTACATAGTACTC 58.870 40.741 0.00 0.00 31.62 2.59
2271 2986 8.517062 TTAGAAGACACCTTACATAGTACTCC 57.483 38.462 0.00 0.00 31.62 3.85
2272 2987 5.892686 AGAAGACACCTTACATAGTACTCCC 59.107 44.000 0.00 0.00 31.62 4.30
2273 2988 5.469210 AGACACCTTACATAGTACTCCCT 57.531 43.478 0.00 0.00 0.00 4.20
2274 2989 5.447757 AGACACCTTACATAGTACTCCCTC 58.552 45.833 0.00 0.00 0.00 4.30
2275 2990 4.544683 ACACCTTACATAGTACTCCCTCC 58.455 47.826 0.00 0.00 0.00 4.30
2276 2991 3.568853 CACCTTACATAGTACTCCCTCCG 59.431 52.174 0.00 0.00 0.00 4.63
2277 2992 3.203934 ACCTTACATAGTACTCCCTCCGT 59.796 47.826 0.00 0.00 0.00 4.69
2278 2993 3.819902 CCTTACATAGTACTCCCTCCGTC 59.180 52.174 0.00 0.00 0.00 4.79
2279 2994 4.446023 CCTTACATAGTACTCCCTCCGTCT 60.446 50.000 0.00 0.00 0.00 4.18
2280 2995 3.211718 ACATAGTACTCCCTCCGTCTC 57.788 52.381 0.00 0.00 0.00 3.36
2281 2996 2.508716 ACATAGTACTCCCTCCGTCTCA 59.491 50.000 0.00 0.00 0.00 3.27
2282 2997 3.138653 ACATAGTACTCCCTCCGTCTCAT 59.861 47.826 0.00 0.00 0.00 2.90
2283 2998 4.350225 ACATAGTACTCCCTCCGTCTCATA 59.650 45.833 0.00 0.00 0.00 2.15
2284 2999 3.947612 AGTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2285 3000 4.456662 AGTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2286 3001 4.145807 AGTACTCCCTCCGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
2287 3002 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
2288 3003 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
2289 3004 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
2290 3005 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
2291 3006 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
2292 3007 5.205821 TCCCTCCGTCTCATAATGTAAGAA 58.794 41.667 0.00 0.00 0.00 2.52
2293 3008 5.068723 TCCCTCCGTCTCATAATGTAAGAAC 59.931 44.000 0.00 0.00 0.00 3.01
2294 3009 4.976731 CCTCCGTCTCATAATGTAAGAACG 59.023 45.833 0.00 0.00 0.00 3.95
2295 3010 5.450137 CCTCCGTCTCATAATGTAAGAACGT 60.450 44.000 0.00 0.00 0.00 3.99
2352 3455 6.037610 CAGCAAGTATAGGAAGTTGGATTGAC 59.962 42.308 0.00 0.00 31.63 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.045131 GGAGTGAGAGTACCGCGGT 61.045 63.158 36.01 36.01 0.00 5.68
49 50 2.890945 AGTTTTCACCCATAGCAACACC 59.109 45.455 0.00 0.00 0.00 4.16
58 59 3.770933 CCATGGATCAAGTTTTCACCCAT 59.229 43.478 5.56 0.00 33.61 4.00
85 86 4.944372 GGATAGCCGCCACCGTCG 62.944 72.222 0.00 0.00 0.00 5.12
349 413 4.705023 ACAATCCCCTAATGACGAAAAAGG 59.295 41.667 0.00 0.00 0.00 3.11
391 455 5.234466 TGCTTCTTCTTTCTTTCTAGCCT 57.766 39.130 0.00 0.00 0.00 4.58
407 471 5.511202 CCTTCTCTTTCTCACTCTTGCTTCT 60.511 44.000 0.00 0.00 0.00 2.85
447 515 5.630415 TTCCCACTTTATCTATCACCCTG 57.370 43.478 0.00 0.00 0.00 4.45
459 527 4.675976 TTGTCTCTCGTTTCCCACTTTA 57.324 40.909 0.00 0.00 0.00 1.85
509 577 6.002082 ACGGGCTTTTTAGTCTGTTCTAATT 58.998 36.000 0.00 0.00 26.74 1.40
598 666 3.935450 ACGTGAGTTGTGAACAATTTCG 58.065 40.909 0.00 7.24 46.40 3.46
701 770 4.000988 TCTGCGTTTCCTCCTTTATGTTC 58.999 43.478 0.00 0.00 0.00 3.18
760 836 2.488153 AGCTCGAACAAATTTAGGGTGC 59.512 45.455 0.00 0.00 0.00 5.01
770 846 3.353836 GGCGCCAGCTCGAACAAA 61.354 61.111 24.80 0.00 44.37 2.83
773 849 4.742201 TGAGGCGCCAGCTCGAAC 62.742 66.667 31.54 9.33 44.37 3.95
842 919 2.423446 GGAGAGATGCCGCGGATT 59.577 61.111 33.48 15.81 0.00 3.01
870 948 3.491104 GGATGGAGTGTACGGTTGAGATC 60.491 52.174 0.00 0.00 0.00 2.75
882 960 1.404181 CGTTCGATGTGGATGGAGTGT 60.404 52.381 0.00 0.00 0.00 3.55
893 971 0.872388 GTTTTCCTGCCGTTCGATGT 59.128 50.000 0.00 0.00 0.00 3.06
910 988 3.003763 GAGGTGGGAGGAGGCGTT 61.004 66.667 0.00 0.00 0.00 4.84
1362 1462 0.035439 ATCGGAATTTGCACGGAGGT 60.035 50.000 0.00 0.00 0.00 3.85
1386 1486 4.609018 CGGCGCACAGGGGGATAG 62.609 72.222 10.83 0.00 0.00 2.08
1392 1492 3.701604 GAGACTACGGCGCACAGGG 62.702 68.421 10.83 0.00 0.00 4.45
1402 1502 0.803117 TTCTGGACAGCGAGACTACG 59.197 55.000 0.00 0.00 0.00 3.51
1404 1504 2.891580 AGTTTTCTGGACAGCGAGACTA 59.108 45.455 0.00 0.00 0.00 2.59
1417 1517 7.080724 GGAACTCATTTCAGCTAAGTTTTCTG 58.919 38.462 0.00 0.00 35.70 3.02
1438 1538 1.947456 GCGGAGATAAACATGGGGAAC 59.053 52.381 0.00 0.00 0.00 3.62
1554 1665 5.556947 GCAGCAGTAAAAATCACAGCAAAAC 60.557 40.000 0.00 0.00 31.42 2.43
1555 1666 4.507388 GCAGCAGTAAAAATCACAGCAAAA 59.493 37.500 0.00 0.00 31.42 2.44
1556 1667 4.050553 GCAGCAGTAAAAATCACAGCAAA 58.949 39.130 0.00 0.00 31.42 3.68
1557 1668 3.641648 GCAGCAGTAAAAATCACAGCAA 58.358 40.909 0.00 0.00 31.42 3.91
1558 1669 2.350676 CGCAGCAGTAAAAATCACAGCA 60.351 45.455 0.00 0.00 31.42 4.41
1559 1670 2.245096 CGCAGCAGTAAAAATCACAGC 58.755 47.619 0.00 0.00 0.00 4.40
1602 1716 2.472695 TGCGCTACAGAAGGAACAAT 57.527 45.000 9.73 0.00 0.00 2.71
1616 1730 3.583383 GCAACCAGATCTTGCGCT 58.417 55.556 9.73 0.00 35.04 5.92
1626 1740 6.631016 TCTGTAATTCAGTACTAGCAACCAG 58.369 40.000 0.00 0.00 43.97 4.00
1644 1758 6.764085 TGAATTCTGGAAACTTCGTTCTGTAA 59.236 34.615 7.05 0.00 0.00 2.41
1656 1770 5.382618 AATGCAGACTGAATTCTGGAAAC 57.617 39.130 15.76 4.54 45.80 2.78
1665 1779 3.057969 TGTCCGAAATGCAGACTGAAT 57.942 42.857 6.65 0.00 0.00 2.57
1681 1795 5.904362 AGAAAGGCAAATCTACAATGTCC 57.096 39.130 0.00 0.00 0.00 4.02
1699 1864 0.105224 TCGCAGACCCGTTCAAGAAA 59.895 50.000 0.00 0.00 0.00 2.52
1759 1970 2.231716 AATGGCCTTTCCTGGTTACC 57.768 50.000 3.32 0.00 35.26 2.85
1783 1994 6.573664 TTCCACAGTGATGTTTGGAAATAG 57.426 37.500 9.16 0.00 43.61 1.73
1790 2001 6.534436 TGAAAACATTTCCACAGTGATGTTTG 59.466 34.615 22.94 9.51 46.30 2.93
1792 2003 6.219417 TGAAAACATTTCCACAGTGATGTT 57.781 33.333 11.55 11.55 42.66 2.71
1794 2005 6.146510 CCAATGAAAACATTTCCACAGTGATG 59.853 38.462 0.62 0.37 0.00 3.07
1797 2008 5.599732 TCCAATGAAAACATTTCCACAGTG 58.400 37.500 0.00 0.00 0.00 3.66
1816 2034 8.911965 TGTTATTGCTGCTAATATTTCATCCAA 58.088 29.630 0.00 0.93 0.00 3.53
1826 2048 9.364989 GGTTTGAAAATGTTATTGCTGCTAATA 57.635 29.630 0.00 1.10 0.00 0.98
1840 2062 6.605594 TGAAGTGTTCCTAGGTTTGAAAATGT 59.394 34.615 9.08 0.00 0.00 2.71
1846 2068 5.825593 AGATGAAGTGTTCCTAGGTTTGA 57.174 39.130 9.08 0.00 0.00 2.69
1847 2069 5.182001 CCAAGATGAAGTGTTCCTAGGTTTG 59.818 44.000 9.08 0.00 0.00 2.93
1848 2070 5.163088 ACCAAGATGAAGTGTTCCTAGGTTT 60.163 40.000 9.08 0.00 0.00 3.27
1850 2072 3.910627 ACCAAGATGAAGTGTTCCTAGGT 59.089 43.478 9.08 0.00 0.00 3.08
1852 2074 6.347725 CGAAAACCAAGATGAAGTGTTCCTAG 60.348 42.308 0.00 0.00 0.00 3.02
1853 2075 5.468746 CGAAAACCAAGATGAAGTGTTCCTA 59.531 40.000 0.00 0.00 0.00 2.94
1854 2076 4.275936 CGAAAACCAAGATGAAGTGTTCCT 59.724 41.667 0.00 0.00 0.00 3.36
1855 2077 4.036380 ACGAAAACCAAGATGAAGTGTTCC 59.964 41.667 0.00 0.00 0.00 3.62
1856 2078 5.169836 ACGAAAACCAAGATGAAGTGTTC 57.830 39.130 0.00 0.00 0.00 3.18
1858 2080 4.202010 CCAACGAAAACCAAGATGAAGTGT 60.202 41.667 0.00 0.00 0.00 3.55
1861 2083 4.537015 GTCCAACGAAAACCAAGATGAAG 58.463 43.478 0.00 0.00 0.00 3.02
1862 2084 3.002862 CGTCCAACGAAAACCAAGATGAA 59.997 43.478 0.00 0.00 46.05 2.57
1863 2085 2.546368 CGTCCAACGAAAACCAAGATGA 59.454 45.455 0.00 0.00 46.05 2.92
1864 2086 2.289547 ACGTCCAACGAAAACCAAGATG 59.710 45.455 6.48 0.00 46.05 2.90
1865 2087 2.567985 ACGTCCAACGAAAACCAAGAT 58.432 42.857 6.48 0.00 46.05 2.40
1866 2088 2.027003 ACGTCCAACGAAAACCAAGA 57.973 45.000 6.48 0.00 46.05 3.02
1867 2089 2.836479 AACGTCCAACGAAAACCAAG 57.164 45.000 6.48 0.00 46.05 3.61
1868 2090 3.487209 GCTTAACGTCCAACGAAAACCAA 60.487 43.478 6.48 0.00 46.05 3.67
1869 2091 2.031930 GCTTAACGTCCAACGAAAACCA 59.968 45.455 6.48 0.00 46.05 3.67
1870 2092 2.031930 TGCTTAACGTCCAACGAAAACC 59.968 45.455 6.48 0.00 46.05 3.27
1871 2093 3.322230 TGCTTAACGTCCAACGAAAAC 57.678 42.857 6.48 0.00 46.05 2.43
1872 2094 4.083908 GGTATGCTTAACGTCCAACGAAAA 60.084 41.667 6.48 0.00 46.05 2.29
1873 2095 3.432933 GGTATGCTTAACGTCCAACGAAA 59.567 43.478 6.48 0.00 46.05 3.46
1874 2096 2.995258 GGTATGCTTAACGTCCAACGAA 59.005 45.455 6.48 0.00 46.05 3.85
1875 2097 2.029200 TGGTATGCTTAACGTCCAACGA 60.029 45.455 6.48 0.00 46.05 3.85
1877 2099 3.124636 CAGTGGTATGCTTAACGTCCAAC 59.875 47.826 0.00 0.00 0.00 3.77
1878 2100 3.244284 ACAGTGGTATGCTTAACGTCCAA 60.244 43.478 0.00 0.00 0.00 3.53
1879 2101 2.300723 ACAGTGGTATGCTTAACGTCCA 59.699 45.455 0.00 0.00 0.00 4.02
1880 2102 2.671396 CACAGTGGTATGCTTAACGTCC 59.329 50.000 0.00 0.00 0.00 4.79
1881 2103 3.581755 TCACAGTGGTATGCTTAACGTC 58.418 45.455 0.00 0.00 0.00 4.34
1882 2104 3.671008 TCACAGTGGTATGCTTAACGT 57.329 42.857 0.00 0.00 0.00 3.99
1883 2105 3.932710 ACATCACAGTGGTATGCTTAACG 59.067 43.478 0.00 0.00 0.00 3.18
1884 2106 5.643777 AGAACATCACAGTGGTATGCTTAAC 59.356 40.000 0.00 0.00 0.00 2.01
1885 2107 5.804639 AGAACATCACAGTGGTATGCTTAA 58.195 37.500 0.00 0.00 0.00 1.85
1886 2108 5.420725 AGAACATCACAGTGGTATGCTTA 57.579 39.130 0.00 0.00 0.00 3.09
1887 2109 4.292186 AGAACATCACAGTGGTATGCTT 57.708 40.909 0.00 0.00 0.00 3.91
1888 2110 3.988976 AGAACATCACAGTGGTATGCT 57.011 42.857 0.00 0.00 0.00 3.79
1889 2111 5.011090 TCTAGAACATCACAGTGGTATGC 57.989 43.478 0.00 0.00 0.00 3.14
1890 2112 9.201127 CATATTCTAGAACATCACAGTGGTATG 57.799 37.037 7.48 3.93 0.00 2.39
1915 2137 5.702670 GGTTTGAAGATGATGTGAACTCTCA 59.297 40.000 0.00 0.00 0.00 3.27
1923 2145 3.689347 TCCCAGGTTTGAAGATGATGTG 58.311 45.455 0.00 0.00 0.00 3.21
1926 2148 4.387026 TGTTCCCAGGTTTGAAGATGAT 57.613 40.909 0.00 0.00 0.00 2.45
1955 2177 4.084013 ACTGTTGTAAGCGCATCAAGTAAC 60.084 41.667 11.47 6.07 0.00 2.50
1967 2195 3.186613 GGCTCTAACACACTGTTGTAAGC 59.813 47.826 0.00 4.39 41.30 3.09
1974 2202 2.234908 GGATCTGGCTCTAACACACTGT 59.765 50.000 0.00 0.00 0.00 3.55
2034 2268 5.092968 TCCCCTCATGGTTGAAAAATCATT 58.907 37.500 0.00 0.00 0.00 2.57
2047 2285 0.254178 CTTGACACCTCCCCTCATGG 59.746 60.000 0.00 0.00 0.00 3.66
2067 2305 3.617263 CGCTACAGGTTATTCACTGTTCC 59.383 47.826 2.44 0.00 45.03 3.62
2068 2306 4.491676 TCGCTACAGGTTATTCACTGTTC 58.508 43.478 2.44 0.00 45.03 3.18
2069 2307 4.495422 CTCGCTACAGGTTATTCACTGTT 58.505 43.478 2.44 0.00 45.03 3.16
2071 2309 2.860735 GCTCGCTACAGGTTATTCACTG 59.139 50.000 0.00 0.00 40.48 3.66
2074 2312 3.603158 TTGCTCGCTACAGGTTATTCA 57.397 42.857 0.00 0.00 0.00 2.57
2075 2313 4.025647 GTCATTGCTCGCTACAGGTTATTC 60.026 45.833 0.00 0.00 0.00 1.75
2077 2315 3.458189 GTCATTGCTCGCTACAGGTTAT 58.542 45.455 0.00 0.00 0.00 1.89
2078 2316 2.418197 GGTCATTGCTCGCTACAGGTTA 60.418 50.000 0.00 0.00 0.00 2.85
2080 2318 0.108138 GGTCATTGCTCGCTACAGGT 60.108 55.000 0.00 0.00 0.00 4.00
2082 2320 1.284657 CAGGTCATTGCTCGCTACAG 58.715 55.000 0.00 0.00 0.00 2.74
2083 2321 0.608130 ACAGGTCATTGCTCGCTACA 59.392 50.000 0.00 0.00 0.00 2.74
2106 2819 6.631962 AGTTGACTTCTTTAGGATTCTACGG 58.368 40.000 0.00 0.00 0.00 4.02
2108 2821 7.612677 TGGAGTTGACTTCTTTAGGATTCTAC 58.387 38.462 0.00 0.00 0.00 2.59
2121 2834 4.154918 CCATTGCTTACTGGAGTTGACTTC 59.845 45.833 0.00 0.00 34.24 3.01
2126 2839 5.404946 CATTTCCATTGCTTACTGGAGTTG 58.595 41.667 0.00 0.00 42.32 3.16
2158 2871 1.966451 CTTGACCCAACGCCTCACC 60.966 63.158 0.00 0.00 0.00 4.02
2163 2876 0.818040 AGAACACTTGACCCAACGCC 60.818 55.000 0.00 0.00 0.00 5.68
2198 2913 5.452078 TCTTCATGTGAACCATTTTGGAC 57.548 39.130 0.00 0.00 40.96 4.02
2213 2928 4.526262 AGATCGGAGGGAGTATTCTTCATG 59.474 45.833 0.00 0.00 0.00 3.07
2257 2972 4.716794 AGACGGAGGGAGTACTATGTAAG 58.283 47.826 0.00 0.00 0.00 2.34
2268 2983 4.827835 TCTTACATTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
2269 2984 4.800023 TCTTACATTATGAGACGGAGGGA 58.200 43.478 0.00 0.00 0.00 4.20
2270 2985 5.290386 GTTCTTACATTATGAGACGGAGGG 58.710 45.833 0.00 0.00 0.00 4.30
2271 2986 4.976731 CGTTCTTACATTATGAGACGGAGG 59.023 45.833 0.00 0.00 0.00 4.30
2272 2987 5.579718 ACGTTCTTACATTATGAGACGGAG 58.420 41.667 0.00 0.00 0.00 4.63
2273 2988 5.571784 ACGTTCTTACATTATGAGACGGA 57.428 39.130 0.00 0.00 0.00 4.69
2274 2989 6.748658 TGTAACGTTCTTACATTATGAGACGG 59.251 38.462 2.82 0.00 30.68 4.79
2275 2990 7.730067 TGTAACGTTCTTACATTATGAGACG 57.270 36.000 2.82 4.47 30.68 4.18
2285 3000 9.820229 GAATGATTGATTTGTAACGTTCTTACA 57.180 29.630 2.82 0.07 33.51 2.41
2288 3003 7.538678 GCAGAATGATTGATTTGTAACGTTCTT 59.461 33.333 2.82 0.00 39.69 2.52
2289 3004 7.023575 GCAGAATGATTGATTTGTAACGTTCT 58.976 34.615 2.82 0.00 39.69 3.01
2290 3005 6.801377 TGCAGAATGATTGATTTGTAACGTTC 59.199 34.615 2.82 0.00 39.69 3.95
2291 3006 6.676950 TGCAGAATGATTGATTTGTAACGTT 58.323 32.000 5.88 5.88 39.69 3.99
2292 3007 6.149308 TCTGCAGAATGATTGATTTGTAACGT 59.851 34.615 15.67 0.00 39.69 3.99
2293 3008 6.545508 TCTGCAGAATGATTGATTTGTAACG 58.454 36.000 15.67 0.00 39.69 3.18
2294 3009 7.809331 TGTTCTGCAGAATGATTGATTTGTAAC 59.191 33.333 30.65 13.81 39.69 2.50
2295 3010 7.884257 TGTTCTGCAGAATGATTGATTTGTAA 58.116 30.769 30.65 0.65 39.69 2.41
2324 3039 3.375299 CCAACTTCCTATACTTGCTGCAC 59.625 47.826 0.00 0.00 0.00 4.57
2352 3455 2.186076 GTCACTAATTCGCTCTGGACG 58.814 52.381 0.00 0.00 0.00 4.79
2446 3550 0.821517 TTATCGTCGCCCTCACACAT 59.178 50.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.