Multiple sequence alignment - TraesCS1A01G291300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G291300 chr1A 100.000 3207 0 0 1 3207 487466423 487469629 0.000000e+00 5923
1 TraesCS1A01G291300 chr1A 96.631 1662 43 10 163 1812 58020292 58021952 0.000000e+00 2747
2 TraesCS1A01G291300 chr1A 96.038 1666 53 10 159 1812 58028552 58026888 0.000000e+00 2699
3 TraesCS1A01G291300 chr1A 94.055 1026 34 11 1806 2806 58023460 58024483 0.000000e+00 1531
4 TraesCS1A01G291300 chr1A 95.481 863 26 6 1806 2657 58025380 58024520 0.000000e+00 1365
5 TraesCS1A01G291300 chr5B 98.513 2690 39 1 163 2852 491655614 491652926 0.000000e+00 4745
6 TraesCS1A01G291300 chr7B 96.388 1661 47 10 164 1812 581349075 581347416 0.000000e+00 2723
7 TraesCS1A01G291300 chr7B 94.873 1658 78 7 159 1812 297143263 297141609 0.000000e+00 2584
8 TraesCS1A01G291300 chr7B 95.681 1065 30 8 1812 2862 297119825 297118763 0.000000e+00 1698
9 TraesCS1A01G291300 chr7B 94.222 1073 35 12 1806 2853 581345912 581344842 0.000000e+00 1613
10 TraesCS1A01G291300 chr7A 96.560 1599 42 10 226 1812 694026777 694028374 0.000000e+00 2636
11 TraesCS1A01G291300 chr7A 95.307 1662 53 10 163 1812 706439629 706441277 0.000000e+00 2614
12 TraesCS1A01G291300 chr7A 94.590 1072 31 12 1806 2852 694029882 694030951 0.000000e+00 1633
13 TraesCS1A01G291300 chr7A 94.403 1072 33 12 1806 2852 706442783 706443852 0.000000e+00 1622
14 TraesCS1A01G291300 chr3B 95.247 1662 51 11 163 1812 607813803 607815448 0.000000e+00 2606
15 TraesCS1A01G291300 chr3B 95.951 1062 27 9 1806 2853 821051718 821052777 0.000000e+00 1709
16 TraesCS1A01G291300 chr3B 94.678 1071 30 12 1806 2851 607816956 607818024 0.000000e+00 1637
17 TraesCS1A01G291300 chrUn 94.562 1655 74 8 161 1812 94949713 94948072 0.000000e+00 2543
18 TraesCS1A01G291300 chrUn 96.224 980 29 4 1806 2779 94939817 94938840 0.000000e+00 1598
19 TraesCS1A01G291300 chr1B 92.131 1652 121 9 164 1812 499022207 499020562 0.000000e+00 2322
20 TraesCS1A01G291300 chr1B 91.586 309 14 6 2900 3207 521002504 521002801 1.780000e-112 416
21 TraesCS1A01G291300 chr1B 94.904 157 6 2 7 161 521002333 521002489 8.890000e-61 244
22 TraesCS1A01G291300 chr1D 92.857 308 15 3 2900 3207 387898452 387898752 1.060000e-119 440
23 TraesCS1A01G291300 chr1D 97.484 159 3 1 1 158 387898276 387898434 1.470000e-68 270
24 TraesCS1A01G291300 chr4D 89.456 294 17 5 2573 2852 366217973 366218266 3.040000e-95 359


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G291300 chr1A 487466423 487469629 3206 False 5923.0 5923 100.0000 1 3207 1 chr1A.!!$F1 3206
1 TraesCS1A01G291300 chr1A 58020292 58024483 4191 False 2139.0 2747 95.3430 163 2806 2 chr1A.!!$F2 2643
2 TraesCS1A01G291300 chr1A 58024520 58028552 4032 True 2032.0 2699 95.7595 159 2657 2 chr1A.!!$R1 2498
3 TraesCS1A01G291300 chr5B 491652926 491655614 2688 True 4745.0 4745 98.5130 163 2852 1 chr5B.!!$R1 2689
4 TraesCS1A01G291300 chr7B 297141609 297143263 1654 True 2584.0 2584 94.8730 159 1812 1 chr7B.!!$R2 1653
5 TraesCS1A01G291300 chr7B 581344842 581349075 4233 True 2168.0 2723 95.3050 164 2853 2 chr7B.!!$R3 2689
6 TraesCS1A01G291300 chr7B 297118763 297119825 1062 True 1698.0 1698 95.6810 1812 2862 1 chr7B.!!$R1 1050
7 TraesCS1A01G291300 chr7A 694026777 694030951 4174 False 2134.5 2636 95.5750 226 2852 2 chr7A.!!$F1 2626
8 TraesCS1A01G291300 chr7A 706439629 706443852 4223 False 2118.0 2614 94.8550 163 2852 2 chr7A.!!$F2 2689
9 TraesCS1A01G291300 chr3B 607813803 607818024 4221 False 2121.5 2606 94.9625 163 2851 2 chr3B.!!$F2 2688
10 TraesCS1A01G291300 chr3B 821051718 821052777 1059 False 1709.0 1709 95.9510 1806 2853 1 chr3B.!!$F1 1047
11 TraesCS1A01G291300 chrUn 94948072 94949713 1641 True 2543.0 2543 94.5620 161 1812 1 chrUn.!!$R2 1651
12 TraesCS1A01G291300 chrUn 94938840 94939817 977 True 1598.0 1598 96.2240 1806 2779 1 chrUn.!!$R1 973
13 TraesCS1A01G291300 chr1B 499020562 499022207 1645 True 2322.0 2322 92.1310 164 1812 1 chr1B.!!$R1 1648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.038067 GCGGCCCGTTTTGGTTTTAT 60.038 50.0 4.45 0.0 35.15 1.40 F
142 143 0.318762 TTTGGTTTTATGCACCCGGC 59.681 50.0 0.00 0.0 45.13 6.13 F
1872 4941 0.955905 GTTGGTAAGAAGCGCCCAAA 59.044 50.0 13.99 0.0 38.61 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 4990 0.756294 TTTCTTCAGCGGACTCCACA 59.244 50.0 0.00 0.0 0.00 4.17 R
1983 5052 1.145900 TTGGGGCATTGGAGGAGGAA 61.146 55.0 0.00 0.0 0.00 3.36 R
2956 6059 0.029834 GCATCATGGTTCATGCGTCC 59.970 55.0 1.77 0.0 41.18 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.807895 CGCGTCCGTTACCACCAG 60.808 66.667 0.00 0.00 0.00 4.00
88 89 2.341176 GCGTCCGTTACCACCAGT 59.659 61.111 0.00 0.00 0.00 4.00
89 90 1.301165 GCGTCCGTTACCACCAGTT 60.301 57.895 0.00 0.00 0.00 3.16
90 91 0.038343 GCGTCCGTTACCACCAGTTA 60.038 55.000 0.00 0.00 0.00 2.24
91 92 1.701704 CGTCCGTTACCACCAGTTAC 58.298 55.000 0.00 0.00 0.00 2.50
92 93 1.669795 CGTCCGTTACCACCAGTTACC 60.670 57.143 0.00 0.00 0.00 2.85
93 94 1.344114 GTCCGTTACCACCAGTTACCA 59.656 52.381 0.00 0.00 0.00 3.25
94 95 2.027837 GTCCGTTACCACCAGTTACCAT 60.028 50.000 0.00 0.00 0.00 3.55
95 96 2.638855 TCCGTTACCACCAGTTACCATT 59.361 45.455 0.00 0.00 0.00 3.16
96 97 3.837146 TCCGTTACCACCAGTTACCATTA 59.163 43.478 0.00 0.00 0.00 1.90
97 98 4.470664 TCCGTTACCACCAGTTACCATTAT 59.529 41.667 0.00 0.00 0.00 1.28
98 99 4.812626 CCGTTACCACCAGTTACCATTATC 59.187 45.833 0.00 0.00 0.00 1.75
99 100 4.812626 CGTTACCACCAGTTACCATTATCC 59.187 45.833 0.00 0.00 0.00 2.59
100 101 3.945640 ACCACCAGTTACCATTATCCC 57.054 47.619 0.00 0.00 0.00 3.85
101 102 2.512476 ACCACCAGTTACCATTATCCCC 59.488 50.000 0.00 0.00 0.00 4.81
102 103 2.486548 CCACCAGTTACCATTATCCCCG 60.487 54.545 0.00 0.00 0.00 5.73
103 104 1.772453 ACCAGTTACCATTATCCCCGG 59.228 52.381 0.00 0.00 0.00 5.73
104 105 1.544759 CCAGTTACCATTATCCCCGGC 60.545 57.143 0.00 0.00 0.00 6.13
105 106 1.142060 CAGTTACCATTATCCCCGGCA 59.858 52.381 0.00 0.00 0.00 5.69
106 107 2.062636 AGTTACCATTATCCCCGGCAT 58.937 47.619 0.00 0.00 0.00 4.40
107 108 3.008594 CAGTTACCATTATCCCCGGCATA 59.991 47.826 0.00 0.00 0.00 3.14
108 109 3.850173 AGTTACCATTATCCCCGGCATAT 59.150 43.478 0.00 0.00 0.00 1.78
109 110 4.291249 AGTTACCATTATCCCCGGCATATT 59.709 41.667 0.00 0.00 0.00 1.28
110 111 3.825908 ACCATTATCCCCGGCATATTT 57.174 42.857 0.00 0.00 0.00 1.40
111 112 3.697166 ACCATTATCCCCGGCATATTTC 58.303 45.455 0.00 0.00 0.00 2.17
112 113 3.333680 ACCATTATCCCCGGCATATTTCT 59.666 43.478 0.00 0.00 0.00 2.52
113 114 3.696051 CCATTATCCCCGGCATATTTCTG 59.304 47.826 0.00 0.00 0.00 3.02
114 115 3.433306 TTATCCCCGGCATATTTCTGG 57.567 47.619 0.00 0.00 0.00 3.86
115 116 0.251341 ATCCCCGGCATATTTCTGGC 60.251 55.000 0.00 0.00 38.28 4.85
119 120 3.042560 GGCATATTTCTGGCGGCC 58.957 61.111 13.32 13.32 31.58 6.13
120 121 2.564721 GGCATATTTCTGGCGGCCC 61.565 63.158 17.97 0.00 35.42 5.80
121 122 2.908073 GCATATTTCTGGCGGCCCG 61.908 63.158 17.97 10.84 0.00 6.13
122 123 1.525995 CATATTTCTGGCGGCCCGT 60.526 57.895 17.97 0.00 0.00 5.28
123 124 1.101049 CATATTTCTGGCGGCCCGTT 61.101 55.000 17.97 2.80 0.00 4.44
124 125 0.395173 ATATTTCTGGCGGCCCGTTT 60.395 50.000 17.97 2.45 0.00 3.60
125 126 0.609681 TATTTCTGGCGGCCCGTTTT 60.610 50.000 17.97 1.19 0.00 2.43
126 127 2.153547 ATTTCTGGCGGCCCGTTTTG 62.154 55.000 17.97 0.00 0.00 2.44
130 131 3.918977 GGCGGCCCGTTTTGGTTT 61.919 61.111 8.12 0.00 35.15 3.27
131 132 2.107343 GCGGCCCGTTTTGGTTTT 59.893 55.556 4.45 0.00 35.15 2.43
132 133 1.363080 GCGGCCCGTTTTGGTTTTA 59.637 52.632 4.45 0.00 35.15 1.52
133 134 0.038067 GCGGCCCGTTTTGGTTTTAT 60.038 50.000 4.45 0.00 35.15 1.40
134 135 1.704070 CGGCCCGTTTTGGTTTTATG 58.296 50.000 0.00 0.00 35.15 1.90
135 136 1.434555 GGCCCGTTTTGGTTTTATGC 58.565 50.000 0.00 0.00 35.15 3.14
136 137 1.270358 GGCCCGTTTTGGTTTTATGCA 60.270 47.619 0.00 0.00 35.15 3.96
137 138 1.795872 GCCCGTTTTGGTTTTATGCAC 59.204 47.619 0.00 0.00 35.15 4.57
138 139 2.409012 CCCGTTTTGGTTTTATGCACC 58.591 47.619 0.00 0.00 35.15 5.01
139 140 2.409012 CCGTTTTGGTTTTATGCACCC 58.591 47.619 0.00 0.00 32.71 4.61
140 141 2.055100 CGTTTTGGTTTTATGCACCCG 58.945 47.619 0.00 0.00 32.71 5.28
141 142 2.409012 GTTTTGGTTTTATGCACCCGG 58.591 47.619 0.00 0.00 32.71 5.73
142 143 0.318762 TTTGGTTTTATGCACCCGGC 59.681 50.000 0.00 0.00 45.13 6.13
155 156 4.335647 CCGGCAGCACCAAGGAGT 62.336 66.667 0.00 0.00 39.03 3.85
156 157 2.662596 CGGCAGCACCAAGGAGTA 59.337 61.111 0.00 0.00 39.03 2.59
157 158 1.741770 CGGCAGCACCAAGGAGTAC 60.742 63.158 0.00 0.00 39.03 2.73
158 159 1.374947 GGCAGCACCAAGGAGTACA 59.625 57.895 0.00 0.00 38.86 2.90
159 160 0.955919 GGCAGCACCAAGGAGTACAC 60.956 60.000 0.00 0.00 38.86 2.90
220 221 3.965539 GATGAGGCGTGCCACAGCT 62.966 63.158 17.42 1.98 39.40 4.24
372 373 4.976996 GCAAAAATCCCCGCGAAA 57.023 50.000 8.23 0.00 0.00 3.46
794 807 1.531149 GTTGCATGCTTGTACGAGTGT 59.469 47.619 20.33 0.00 0.00 3.55
1313 1341 5.010820 GTGGTCTACTGGTAGATACATTCCC 59.989 48.000 12.72 8.46 43.32 3.97
1435 1463 7.005709 ACTGTTAGTAGGTACTTCAATGCTT 57.994 36.000 0.00 0.00 41.75 3.91
1685 1713 1.046204 TGTGCCAATCCACATGCAAA 58.954 45.000 0.00 0.00 40.55 3.68
1690 1718 3.768215 TGCCAATCCACATGCAAAATAGA 59.232 39.130 0.00 0.00 0.00 1.98
1872 4941 0.955905 GTTGGTAAGAAGCGCCCAAA 59.044 50.000 13.99 0.00 38.61 3.28
1921 4990 4.490743 CACCAAAAACCAAGAGTCGTTTT 58.509 39.130 2.60 2.60 42.46 2.43
2145 5214 3.738830 ATGCAGTGCAAGTGACAAAAT 57.261 38.095 23.90 0.00 43.62 1.82
2319 5393 1.674817 GCTACGGCTACTGCTTTTGGA 60.675 52.381 0.00 0.00 39.59 3.53
2662 5764 1.688197 CTGTGGCAGGAAACCAAACAT 59.312 47.619 0.00 0.00 39.39 2.71
2719 5822 1.135257 TCCAAACACACGCCACAAAAG 60.135 47.619 0.00 0.00 0.00 2.27
2855 5958 1.698506 CAACCAAACAGCCCCTTACA 58.301 50.000 0.00 0.00 0.00 2.41
2858 5961 2.059490 ACCAAACAGCCCCTTACACTA 58.941 47.619 0.00 0.00 0.00 2.74
2859 5962 2.224695 ACCAAACAGCCCCTTACACTAC 60.225 50.000 0.00 0.00 0.00 2.73
2860 5963 2.039879 CCAAACAGCCCCTTACACTACT 59.960 50.000 0.00 0.00 0.00 2.57
2861 5964 3.262405 CCAAACAGCCCCTTACACTACTA 59.738 47.826 0.00 0.00 0.00 1.82
2862 5965 4.251268 CAAACAGCCCCTTACACTACTAC 58.749 47.826 0.00 0.00 0.00 2.73
2863 5966 3.469750 ACAGCCCCTTACACTACTACT 57.530 47.619 0.00 0.00 0.00 2.57
2864 5967 3.097614 ACAGCCCCTTACACTACTACTG 58.902 50.000 0.00 0.00 0.00 2.74
2865 5968 2.431057 CAGCCCCTTACACTACTACTGG 59.569 54.545 0.00 0.00 0.00 4.00
2866 5969 1.138464 GCCCCTTACACTACTACTGGC 59.862 57.143 0.00 0.00 0.00 4.85
2867 5970 1.761198 CCCCTTACACTACTACTGGCC 59.239 57.143 0.00 0.00 0.00 5.36
2868 5971 2.463752 CCCTTACACTACTACTGGCCA 58.536 52.381 4.71 4.71 0.00 5.36
2869 5972 2.431057 CCCTTACACTACTACTGGCCAG 59.569 54.545 31.60 31.60 0.00 4.85
2870 5973 2.431057 CCTTACACTACTACTGGCCAGG 59.569 54.545 35.42 21.48 0.00 4.45
2871 5974 1.481871 TACACTACTACTGGCCAGGC 58.518 55.000 35.42 1.26 0.00 4.85
2872 5975 0.252284 ACACTACTACTGGCCAGGCT 60.252 55.000 35.42 19.06 0.00 4.58
2873 5976 1.006758 ACACTACTACTGGCCAGGCTA 59.993 52.381 35.42 19.16 0.00 3.93
2874 5977 1.409427 CACTACTACTGGCCAGGCTAC 59.591 57.143 35.42 0.00 0.00 3.58
2875 5978 1.006758 ACTACTACTGGCCAGGCTACA 59.993 52.381 35.42 15.72 0.00 2.74
2876 5979 1.409427 CTACTACTGGCCAGGCTACAC 59.591 57.143 35.42 0.00 0.00 2.90
2877 5980 0.252284 ACTACTGGCCAGGCTACACT 60.252 55.000 35.42 15.99 0.00 3.55
2878 5981 0.905357 CTACTGGCCAGGCTACACTT 59.095 55.000 35.42 15.23 0.00 3.16
2879 5982 2.108168 CTACTGGCCAGGCTACACTTA 58.892 52.381 35.42 15.55 0.00 2.24
2880 5983 0.613777 ACTGGCCAGGCTACACTTAC 59.386 55.000 35.42 0.00 0.00 2.34
2881 5984 0.107654 CTGGCCAGGCTACACTTACC 60.108 60.000 26.14 0.00 0.00 2.85
2882 5985 0.546747 TGGCCAGGCTACACTTACCT 60.547 55.000 12.43 0.00 0.00 3.08
2883 5986 0.178301 GGCCAGGCTACACTTACCTC 59.822 60.000 12.43 0.00 0.00 3.85
2884 5987 1.196012 GCCAGGCTACACTTACCTCT 58.804 55.000 3.29 0.00 0.00 3.69
2885 5988 1.137282 GCCAGGCTACACTTACCTCTC 59.863 57.143 3.29 0.00 0.00 3.20
2886 5989 2.741145 CCAGGCTACACTTACCTCTCT 58.259 52.381 0.00 0.00 0.00 3.10
2887 5990 3.100671 CCAGGCTACACTTACCTCTCTT 58.899 50.000 0.00 0.00 0.00 2.85
2888 5991 3.515901 CCAGGCTACACTTACCTCTCTTT 59.484 47.826 0.00 0.00 0.00 2.52
2889 5992 4.710375 CCAGGCTACACTTACCTCTCTTTA 59.290 45.833 0.00 0.00 0.00 1.85
2890 5993 5.187186 CCAGGCTACACTTACCTCTCTTTAA 59.813 44.000 0.00 0.00 0.00 1.52
2891 5994 6.127026 CCAGGCTACACTTACCTCTCTTTAAT 60.127 42.308 0.00 0.00 0.00 1.40
2892 5995 7.069578 CCAGGCTACACTTACCTCTCTTTAATA 59.930 40.741 0.00 0.00 0.00 0.98
2893 5996 8.475639 CAGGCTACACTTACCTCTCTTTAATAA 58.524 37.037 0.00 0.00 0.00 1.40
2894 5997 9.214962 AGGCTACACTTACCTCTCTTTAATAAT 57.785 33.333 0.00 0.00 0.00 1.28
2895 5998 9.833917 GGCTACACTTACCTCTCTTTAATAATT 57.166 33.333 0.00 0.00 0.00 1.40
2948 6051 2.759839 AAAAAGGAAAAGGACCGGGA 57.240 45.000 6.32 0.00 0.00 5.14
2949 6052 2.287977 AAAAGGAAAAGGACCGGGAG 57.712 50.000 6.32 0.00 0.00 4.30
2950 6053 0.251209 AAAGGAAAAGGACCGGGAGC 60.251 55.000 6.32 0.00 0.00 4.70
2951 6054 1.423794 AAGGAAAAGGACCGGGAGCA 61.424 55.000 6.32 0.00 0.00 4.26
2952 6055 1.377333 GGAAAAGGACCGGGAGCAG 60.377 63.158 6.32 0.00 0.00 4.24
2953 6056 1.377333 GAAAAGGACCGGGAGCAGG 60.377 63.158 6.32 0.00 0.00 4.85
2954 6057 1.838073 GAAAAGGACCGGGAGCAGGA 61.838 60.000 6.32 0.00 0.00 3.86
2955 6058 2.125766 AAAAGGACCGGGAGCAGGAC 62.126 60.000 6.32 0.00 0.00 3.85
2963 6066 4.148825 GGAGCAGGACGGACGCAT 62.149 66.667 0.00 0.00 0.00 4.73
2964 6067 2.887568 GAGCAGGACGGACGCATG 60.888 66.667 0.00 0.00 0.00 4.06
2965 6068 3.356639 GAGCAGGACGGACGCATGA 62.357 63.158 0.00 0.00 0.00 3.07
2966 6069 2.434185 GCAGGACGGACGCATGAA 60.434 61.111 0.00 0.00 0.00 2.57
2967 6070 2.740714 GCAGGACGGACGCATGAAC 61.741 63.158 0.00 0.00 0.00 3.18
2968 6071 2.100631 CAGGACGGACGCATGAACC 61.101 63.158 0.00 0.00 0.00 3.62
2969 6072 2.047655 GGACGGACGCATGAACCA 60.048 61.111 0.00 0.00 0.00 3.67
2970 6073 1.449601 GGACGGACGCATGAACCAT 60.450 57.895 0.00 0.00 0.00 3.55
2971 6074 1.705337 GGACGGACGCATGAACCATG 61.705 60.000 0.00 2.77 43.91 3.66
2972 6075 0.739462 GACGGACGCATGAACCATGA 60.739 55.000 10.77 0.00 43.81 3.07
2973 6076 0.107703 ACGGACGCATGAACCATGAT 60.108 50.000 10.77 0.00 43.81 2.45
2974 6077 0.305617 CGGACGCATGAACCATGATG 59.694 55.000 10.77 4.95 43.81 3.07
2975 6078 0.029834 GGACGCATGAACCATGATGC 59.970 55.000 10.77 6.96 43.81 3.91
2976 6079 1.019673 GACGCATGAACCATGATGCT 58.980 50.000 13.39 3.24 43.81 3.79
2977 6080 1.402968 GACGCATGAACCATGATGCTT 59.597 47.619 13.39 5.83 43.81 3.91
2978 6081 1.402968 ACGCATGAACCATGATGCTTC 59.597 47.619 13.39 0.00 43.81 3.86
2979 6082 1.674441 CGCATGAACCATGATGCTTCT 59.326 47.619 13.39 0.00 43.81 2.85
2980 6083 2.286831 CGCATGAACCATGATGCTTCTC 60.287 50.000 13.39 0.00 43.81 2.87
2981 6084 2.286831 GCATGAACCATGATGCTTCTCG 60.287 50.000 10.77 0.00 43.81 4.04
2982 6085 3.200483 CATGAACCATGATGCTTCTCGA 58.800 45.455 0.00 0.00 43.81 4.04
2983 6086 2.621338 TGAACCATGATGCTTCTCGAC 58.379 47.619 0.00 0.00 0.00 4.20
2984 6087 2.234661 TGAACCATGATGCTTCTCGACT 59.765 45.455 0.00 0.00 0.00 4.18
2985 6088 2.593346 ACCATGATGCTTCTCGACTC 57.407 50.000 0.00 0.00 0.00 3.36
2986 6089 1.202348 ACCATGATGCTTCTCGACTCG 60.202 52.381 0.00 0.00 0.00 4.18
2987 6090 1.485397 CATGATGCTTCTCGACTCGG 58.515 55.000 0.00 0.00 0.00 4.63
2988 6091 0.249238 ATGATGCTTCTCGACTCGGC 60.249 55.000 0.00 0.00 0.00 5.54
2989 6092 1.590259 GATGCTTCTCGACTCGGCC 60.590 63.158 0.00 0.00 0.00 6.13
2990 6093 3.417275 ATGCTTCTCGACTCGGCCG 62.417 63.158 22.12 22.12 0.00 6.13
2991 6094 4.856607 GCTTCTCGACTCGGCCGG 62.857 72.222 27.83 18.67 0.00 6.13
2992 6095 3.441290 CTTCTCGACTCGGCCGGT 61.441 66.667 27.83 22.07 0.00 5.28
2993 6096 3.685214 CTTCTCGACTCGGCCGGTG 62.685 68.421 27.83 20.71 0.00 4.94
3003 6106 3.443045 GGCCGGTGCTGATTGGTG 61.443 66.667 1.90 0.00 37.74 4.17
3004 6107 4.120331 GCCGGTGCTGATTGGTGC 62.120 66.667 1.90 0.00 33.53 5.01
3005 6108 3.803082 CCGGTGCTGATTGGTGCG 61.803 66.667 0.00 0.00 0.00 5.34
3006 6109 3.803082 CGGTGCTGATTGGTGCGG 61.803 66.667 0.00 0.00 0.00 5.69
3007 6110 4.120331 GGTGCTGATTGGTGCGGC 62.120 66.667 0.00 0.00 38.13 6.53
3008 6111 4.120331 GTGCTGATTGGTGCGGCC 62.120 66.667 0.00 0.00 36.82 6.13
3016 6119 4.927782 TGGTGCGGCCAGTGACAC 62.928 66.667 2.24 0.00 43.61 3.67
3022 6125 4.660938 GGCCAGTGACACCCACCC 62.661 72.222 0.00 0.00 46.87 4.61
3023 6126 3.884774 GCCAGTGACACCCACCCA 61.885 66.667 0.84 0.00 46.87 4.51
3024 6127 2.431683 CCAGTGACACCCACCCAG 59.568 66.667 0.84 0.00 46.87 4.45
3025 6128 2.281761 CAGTGACACCCACCCAGC 60.282 66.667 0.84 0.00 46.87 4.85
3026 6129 2.448542 AGTGACACCCACCCAGCT 60.449 61.111 0.84 0.00 46.87 4.24
3027 6130 2.032681 GTGACACCCACCCAGCTC 59.967 66.667 0.00 0.00 39.86 4.09
3028 6131 3.249189 TGACACCCACCCAGCTCC 61.249 66.667 0.00 0.00 0.00 4.70
3029 6132 4.394712 GACACCCACCCAGCTCCG 62.395 72.222 0.00 0.00 0.00 4.63
3038 6141 4.093952 CCAGCTCCGCGCAAAGTG 62.094 66.667 8.75 5.11 42.61 3.16
3039 6142 3.349006 CAGCTCCGCGCAAAGTGT 61.349 61.111 8.75 0.00 42.61 3.55
3040 6143 2.591715 AGCTCCGCGCAAAGTGTT 60.592 55.556 8.75 0.00 42.61 3.32
3041 6144 2.186826 AGCTCCGCGCAAAGTGTTT 61.187 52.632 8.75 0.00 42.61 2.83
3042 6145 2.010817 GCTCCGCGCAAAGTGTTTG 61.011 57.895 8.75 0.00 43.44 2.93
3043 6146 1.355210 CTCCGCGCAAAGTGTTTGT 59.645 52.632 8.75 0.00 42.56 2.83
3049 6152 1.267365 CGCAAAGTGTTTGTGTGTGG 58.733 50.000 5.04 0.00 44.04 4.17
3050 6153 0.998669 GCAAAGTGTTTGTGTGTGGC 59.001 50.000 1.62 0.00 42.56 5.01
3051 6154 1.404047 GCAAAGTGTTTGTGTGTGGCT 60.404 47.619 1.62 0.00 42.56 4.75
3052 6155 2.261345 CAAAGTGTTTGTGTGTGGCTG 58.739 47.619 0.00 0.00 35.94 4.85
3053 6156 0.817013 AAGTGTTTGTGTGTGGCTGG 59.183 50.000 0.00 0.00 0.00 4.85
3054 6157 0.034574 AGTGTTTGTGTGTGGCTGGA 60.035 50.000 0.00 0.00 0.00 3.86
3055 6158 1.032014 GTGTTTGTGTGTGGCTGGAT 58.968 50.000 0.00 0.00 0.00 3.41
3056 6159 1.031235 TGTTTGTGTGTGGCTGGATG 58.969 50.000 0.00 0.00 0.00 3.51
3057 6160 1.317613 GTTTGTGTGTGGCTGGATGA 58.682 50.000 0.00 0.00 0.00 2.92
3058 6161 1.680735 GTTTGTGTGTGGCTGGATGAA 59.319 47.619 0.00 0.00 0.00 2.57
3059 6162 1.317613 TTGTGTGTGGCTGGATGAAC 58.682 50.000 0.00 0.00 0.00 3.18
3060 6163 0.537143 TGTGTGTGGCTGGATGAACC 60.537 55.000 0.00 0.00 39.54 3.62
3061 6164 1.074775 TGTGTGGCTGGATGAACCC 59.925 57.895 0.00 0.00 38.00 4.11
3062 6165 1.380302 GTGTGGCTGGATGAACCCT 59.620 57.895 0.00 0.00 38.00 4.34
3063 6166 0.678048 GTGTGGCTGGATGAACCCTC 60.678 60.000 0.00 0.00 38.00 4.30
3064 6167 1.077429 GTGGCTGGATGAACCCTCC 60.077 63.158 0.00 0.00 38.00 4.30
3065 6168 1.229951 TGGCTGGATGAACCCTCCT 60.230 57.895 0.00 0.00 38.00 3.69
3066 6169 1.225704 GGCTGGATGAACCCTCCTG 59.774 63.158 0.00 0.00 38.00 3.86
3067 6170 1.452833 GCTGGATGAACCCTCCTGC 60.453 63.158 5.62 5.62 46.18 4.85
3068 6171 2.305095 CTGGATGAACCCTCCTGCT 58.695 57.895 0.00 0.00 38.00 4.24
3069 6172 1.500474 CTGGATGAACCCTCCTGCTA 58.500 55.000 0.00 0.00 38.00 3.49
3070 6173 1.139853 CTGGATGAACCCTCCTGCTAC 59.860 57.143 0.00 0.00 38.00 3.58
3071 6174 1.273838 TGGATGAACCCTCCTGCTACT 60.274 52.381 0.00 0.00 38.00 2.57
3072 6175 1.414550 GGATGAACCCTCCTGCTACTC 59.585 57.143 0.00 0.00 0.00 2.59
3073 6176 1.414550 GATGAACCCTCCTGCTACTCC 59.585 57.143 0.00 0.00 0.00 3.85
3074 6177 0.116342 TGAACCCTCCTGCTACTCCA 59.884 55.000 0.00 0.00 0.00 3.86
3075 6178 0.537653 GAACCCTCCTGCTACTCCAC 59.462 60.000 0.00 0.00 0.00 4.02
3076 6179 0.117340 AACCCTCCTGCTACTCCACT 59.883 55.000 0.00 0.00 0.00 4.00
3077 6180 0.616111 ACCCTCCTGCTACTCCACTG 60.616 60.000 0.00 0.00 0.00 3.66
3078 6181 1.519719 CCTCCTGCTACTCCACTGC 59.480 63.158 0.00 0.00 0.00 4.40
3079 6182 1.260538 CCTCCTGCTACTCCACTGCA 61.261 60.000 0.00 0.00 35.30 4.41
3082 6185 2.665000 TGCTACTCCACTGCAGGC 59.335 61.111 19.93 10.28 32.55 4.85
3083 6186 2.216331 TGCTACTCCACTGCAGGCA 61.216 57.895 19.93 12.97 32.55 4.75
3108 6211 3.683937 GGCAGTGCCGGCAAACAT 61.684 61.111 34.66 15.19 39.62 2.71
3109 6212 2.126346 GCAGTGCCGGCAAACATC 60.126 61.111 34.66 19.16 0.00 3.06
3110 6213 2.918345 GCAGTGCCGGCAAACATCA 61.918 57.895 34.66 2.53 0.00 3.07
3111 6214 1.885157 CAGTGCCGGCAAACATCAT 59.115 52.632 34.66 8.34 0.00 2.45
3112 6215 0.457166 CAGTGCCGGCAAACATCATG 60.457 55.000 34.66 16.70 0.00 3.07
3113 6216 1.806758 GTGCCGGCAAACATCATGC 60.807 57.895 34.66 11.96 43.08 4.06
3114 6217 1.978080 TGCCGGCAAACATCATGCT 60.978 52.632 30.74 0.00 43.34 3.79
3115 6218 0.679321 TGCCGGCAAACATCATGCTA 60.679 50.000 30.74 0.00 43.34 3.49
3116 6219 0.455410 GCCGGCAAACATCATGCTAA 59.545 50.000 24.80 0.00 43.34 3.09
3117 6220 1.135141 GCCGGCAAACATCATGCTAAA 60.135 47.619 24.80 0.00 43.34 1.85
3118 6221 2.673610 GCCGGCAAACATCATGCTAAAA 60.674 45.455 24.80 0.00 43.34 1.52
3119 6222 3.583806 CCGGCAAACATCATGCTAAAAA 58.416 40.909 0.00 0.00 43.34 1.94
3140 6243 6.541111 AAAAACTCTACCTAACTCGCAAAG 57.459 37.500 0.00 0.00 0.00 2.77
3141 6244 3.233684 ACTCTACCTAACTCGCAAAGC 57.766 47.619 0.00 0.00 0.00 3.51
3142 6245 2.094130 ACTCTACCTAACTCGCAAAGCC 60.094 50.000 0.00 0.00 0.00 4.35
3143 6246 1.206371 TCTACCTAACTCGCAAAGCCC 59.794 52.381 0.00 0.00 0.00 5.19
3144 6247 0.978151 TACCTAACTCGCAAAGCCCA 59.022 50.000 0.00 0.00 0.00 5.36
3145 6248 0.109723 ACCTAACTCGCAAAGCCCAA 59.890 50.000 0.00 0.00 0.00 4.12
3146 6249 0.804989 CCTAACTCGCAAAGCCCAAG 59.195 55.000 0.00 0.00 0.00 3.61
3147 6250 0.169009 CTAACTCGCAAAGCCCAAGC 59.831 55.000 0.00 0.00 40.32 4.01
3148 6251 1.241315 TAACTCGCAAAGCCCAAGCC 61.241 55.000 0.00 0.00 41.25 4.35
3149 6252 2.985282 CTCGCAAAGCCCAAGCCA 60.985 61.111 0.00 0.00 41.25 4.75
3150 6253 2.985282 TCGCAAAGCCCAAGCCAG 60.985 61.111 0.00 0.00 41.25 4.85
3151 6254 3.297620 CGCAAAGCCCAAGCCAGT 61.298 61.111 0.00 0.00 41.25 4.00
3152 6255 2.341176 GCAAAGCCCAAGCCAGTG 59.659 61.111 0.00 0.00 41.25 3.66
3153 6256 2.202395 GCAAAGCCCAAGCCAGTGA 61.202 57.895 0.00 0.00 41.25 3.41
3154 6257 1.962144 CAAAGCCCAAGCCAGTGAG 59.038 57.895 0.00 0.00 41.25 3.51
3155 6258 1.228675 AAAGCCCAAGCCAGTGAGG 60.229 57.895 0.00 0.00 41.25 3.86
3156 6259 1.719063 AAAGCCCAAGCCAGTGAGGA 61.719 55.000 0.00 0.00 41.22 3.71
3157 6260 1.719063 AAGCCCAAGCCAGTGAGGAA 61.719 55.000 0.00 0.00 41.22 3.36
3158 6261 1.000396 GCCCAAGCCAGTGAGGAAT 60.000 57.895 0.00 0.00 41.22 3.01
3159 6262 1.318158 GCCCAAGCCAGTGAGGAATG 61.318 60.000 0.00 0.00 41.22 2.67
3160 6263 0.329261 CCCAAGCCAGTGAGGAATGA 59.671 55.000 0.00 0.00 41.22 2.57
3161 6264 1.457346 CCAAGCCAGTGAGGAATGAC 58.543 55.000 0.00 0.00 41.22 3.06
3162 6265 1.271543 CCAAGCCAGTGAGGAATGACA 60.272 52.381 0.00 0.00 41.22 3.58
3163 6266 1.808945 CAAGCCAGTGAGGAATGACAC 59.191 52.381 0.00 0.00 41.22 3.67
3164 6267 1.059098 AGCCAGTGAGGAATGACACA 58.941 50.000 0.00 0.00 41.22 3.72
3165 6268 1.160137 GCCAGTGAGGAATGACACAC 58.840 55.000 0.00 0.00 41.22 3.82
3166 6269 1.543208 GCCAGTGAGGAATGACACACA 60.543 52.381 0.00 0.00 41.22 3.72
3167 6270 2.849942 CCAGTGAGGAATGACACACAA 58.150 47.619 0.00 0.00 41.22 3.33
3168 6271 2.810274 CCAGTGAGGAATGACACACAAG 59.190 50.000 0.00 0.00 41.22 3.16
3169 6272 2.225019 CAGTGAGGAATGACACACAAGC 59.775 50.000 0.00 0.00 39.18 4.01
3170 6273 1.537202 GTGAGGAATGACACACAAGCC 59.463 52.381 0.00 0.00 37.05 4.35
3171 6274 1.142667 TGAGGAATGACACACAAGCCA 59.857 47.619 0.00 0.00 0.00 4.75
3172 6275 1.537202 GAGGAATGACACACAAGCCAC 59.463 52.381 0.00 0.00 0.00 5.01
3173 6276 1.133823 AGGAATGACACACAAGCCACA 60.134 47.619 0.00 0.00 0.00 4.17
3174 6277 1.888512 GGAATGACACACAAGCCACAT 59.111 47.619 0.00 0.00 0.00 3.21
3175 6278 2.352030 GGAATGACACACAAGCCACATG 60.352 50.000 0.00 0.00 0.00 3.21
3176 6279 0.599558 ATGACACACAAGCCACATGC 59.400 50.000 0.00 0.00 41.71 4.06
3188 6291 3.205784 GCCACATGCTATCTCTTTCCT 57.794 47.619 0.00 0.00 36.87 3.36
3189 6292 3.549794 GCCACATGCTATCTCTTTCCTT 58.450 45.455 0.00 0.00 36.87 3.36
3190 6293 3.950395 GCCACATGCTATCTCTTTCCTTT 59.050 43.478 0.00 0.00 36.87 3.11
3191 6294 4.400567 GCCACATGCTATCTCTTTCCTTTT 59.599 41.667 0.00 0.00 36.87 2.27
3192 6295 5.449725 GCCACATGCTATCTCTTTCCTTTTC 60.450 44.000 0.00 0.00 36.87 2.29
3193 6296 5.067023 CCACATGCTATCTCTTTCCTTTTCC 59.933 44.000 0.00 0.00 0.00 3.13
3194 6297 5.067023 CACATGCTATCTCTTTCCTTTTCCC 59.933 44.000 0.00 0.00 0.00 3.97
3195 6298 5.044550 ACATGCTATCTCTTTCCTTTTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
3196 6299 5.520748 TGCTATCTCTTTCCTTTTCCCTT 57.479 39.130 0.00 0.00 0.00 3.95
3197 6300 5.892348 TGCTATCTCTTTCCTTTTCCCTTT 58.108 37.500 0.00 0.00 0.00 3.11
3198 6301 6.314917 TGCTATCTCTTTCCTTTTCCCTTTT 58.685 36.000 0.00 0.00 0.00 2.27
3199 6302 6.434340 TGCTATCTCTTTCCTTTTCCCTTTTC 59.566 38.462 0.00 0.00 0.00 2.29
3200 6303 6.661377 GCTATCTCTTTCCTTTTCCCTTTTCT 59.339 38.462 0.00 0.00 0.00 2.52
3201 6304 7.177568 GCTATCTCTTTCCTTTTCCCTTTTCTT 59.822 37.037 0.00 0.00 0.00 2.52
3202 6305 7.921041 ATCTCTTTCCTTTTCCCTTTTCTTT 57.079 32.000 0.00 0.00 0.00 2.52
3203 6306 7.733773 TCTCTTTCCTTTTCCCTTTTCTTTT 57.266 32.000 0.00 0.00 0.00 2.27
3204 6307 8.146053 TCTCTTTCCTTTTCCCTTTTCTTTTT 57.854 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.807895 CTGGTGGTAACGGACGCG 60.808 66.667 3.53 3.53 42.51 6.01
71 72 0.038343 TAACTGGTGGTAACGGACGC 60.038 55.000 0.00 0.00 42.51 5.19
72 73 1.669795 GGTAACTGGTGGTAACGGACG 60.670 57.143 0.00 0.00 42.51 4.79
73 74 1.344114 TGGTAACTGGTGGTAACGGAC 59.656 52.381 0.00 0.00 36.89 4.79
74 75 1.714541 TGGTAACTGGTGGTAACGGA 58.285 50.000 0.00 0.00 36.89 4.69
75 76 2.773993 ATGGTAACTGGTGGTAACGG 57.226 50.000 0.00 0.00 36.89 4.44
76 77 4.812626 GGATAATGGTAACTGGTGGTAACG 59.187 45.833 0.00 0.00 36.89 3.18
77 78 5.128205 GGGATAATGGTAACTGGTGGTAAC 58.872 45.833 0.00 0.00 37.61 2.50
78 79 4.166531 GGGGATAATGGTAACTGGTGGTAA 59.833 45.833 0.00 0.00 37.61 2.85
79 80 3.717913 GGGGATAATGGTAACTGGTGGTA 59.282 47.826 0.00 0.00 37.61 3.25
80 81 2.512476 GGGGATAATGGTAACTGGTGGT 59.488 50.000 0.00 0.00 37.61 4.16
81 82 2.486548 CGGGGATAATGGTAACTGGTGG 60.487 54.545 0.00 0.00 37.61 4.61
82 83 2.486548 CCGGGGATAATGGTAACTGGTG 60.487 54.545 0.00 0.00 37.61 4.17
83 84 1.772453 CCGGGGATAATGGTAACTGGT 59.228 52.381 0.00 0.00 37.61 4.00
84 85 1.544759 GCCGGGGATAATGGTAACTGG 60.545 57.143 2.18 0.00 37.61 4.00
85 86 1.142060 TGCCGGGGATAATGGTAACTG 59.858 52.381 2.18 0.00 37.61 3.16
86 87 1.513858 TGCCGGGGATAATGGTAACT 58.486 50.000 2.18 0.00 37.61 2.24
87 88 2.579410 ATGCCGGGGATAATGGTAAC 57.421 50.000 2.18 0.00 0.00 2.50
88 89 4.938575 AATATGCCGGGGATAATGGTAA 57.061 40.909 12.50 0.00 0.00 2.85
89 90 4.538490 AGAAATATGCCGGGGATAATGGTA 59.462 41.667 12.50 0.00 0.00 3.25
90 91 3.333680 AGAAATATGCCGGGGATAATGGT 59.666 43.478 12.50 0.00 0.00 3.55
91 92 3.696051 CAGAAATATGCCGGGGATAATGG 59.304 47.826 12.50 0.00 0.00 3.16
92 93 3.696051 CCAGAAATATGCCGGGGATAATG 59.304 47.826 12.50 8.85 0.00 1.90
93 94 3.877735 GCCAGAAATATGCCGGGGATAAT 60.878 47.826 12.50 0.89 0.00 1.28
94 95 2.554344 GCCAGAAATATGCCGGGGATAA 60.554 50.000 12.50 0.00 0.00 1.75
95 96 1.004277 GCCAGAAATATGCCGGGGATA 59.996 52.381 10.86 10.86 0.00 2.59
96 97 0.251341 GCCAGAAATATGCCGGGGAT 60.251 55.000 6.23 6.23 0.00 3.85
97 98 1.150536 GCCAGAAATATGCCGGGGA 59.849 57.895 2.18 0.00 0.00 4.81
98 99 2.260869 CGCCAGAAATATGCCGGGG 61.261 63.158 2.18 0.00 0.00 5.73
99 100 2.260869 CCGCCAGAAATATGCCGGG 61.261 63.158 2.18 0.00 0.00 5.73
100 101 2.908073 GCCGCCAGAAATATGCCGG 61.908 63.158 0.00 0.00 0.00 6.13
101 102 2.639286 GCCGCCAGAAATATGCCG 59.361 61.111 0.00 0.00 0.00 5.69
102 103 2.564721 GGGCCGCCAGAAATATGCC 61.565 63.158 12.58 0.00 38.16 4.40
103 104 2.908073 CGGGCCGCCAGAAATATGC 61.908 63.158 15.42 0.00 0.00 3.14
104 105 1.101049 AACGGGCCGCCAGAAATATG 61.101 55.000 28.71 0.00 0.00 1.78
105 106 0.395173 AAACGGGCCGCCAGAAATAT 60.395 50.000 28.71 0.00 0.00 1.28
106 107 0.609681 AAAACGGGCCGCCAGAAATA 60.610 50.000 28.71 0.00 0.00 1.40
107 108 1.906333 AAAACGGGCCGCCAGAAAT 60.906 52.632 28.71 0.15 0.00 2.17
108 109 2.519780 AAAACGGGCCGCCAGAAA 60.520 55.556 28.71 0.00 0.00 2.52
109 110 3.291383 CAAAACGGGCCGCCAGAA 61.291 61.111 28.71 0.00 0.00 3.02
113 114 2.085042 TAAAACCAAAACGGGCCGCC 62.085 55.000 28.71 0.00 40.22 6.13
114 115 0.038067 ATAAAACCAAAACGGGCCGC 60.038 50.000 28.71 0.00 40.22 6.53
115 116 1.704070 CATAAAACCAAAACGGGCCG 58.296 50.000 27.06 27.06 40.22 6.13
116 117 1.270358 TGCATAAAACCAAAACGGGCC 60.270 47.619 0.00 0.00 40.22 5.80
117 118 1.795872 GTGCATAAAACCAAAACGGGC 59.204 47.619 0.00 0.00 40.22 6.13
118 119 2.409012 GGTGCATAAAACCAAAACGGG 58.591 47.619 0.00 0.00 40.22 5.28
119 120 2.409012 GGGTGCATAAAACCAAAACGG 58.591 47.619 0.00 0.00 39.65 4.44
120 121 2.055100 CGGGTGCATAAAACCAAAACG 58.945 47.619 0.00 0.00 39.65 3.60
121 122 2.409012 CCGGGTGCATAAAACCAAAAC 58.591 47.619 0.00 0.00 39.65 2.43
122 123 1.270358 GCCGGGTGCATAAAACCAAAA 60.270 47.619 2.18 0.00 39.65 2.44
123 124 0.318762 GCCGGGTGCATAAAACCAAA 59.681 50.000 2.18 0.00 39.65 3.28
124 125 1.968310 GCCGGGTGCATAAAACCAA 59.032 52.632 2.18 0.00 39.65 3.67
125 126 3.688086 GCCGGGTGCATAAAACCA 58.312 55.556 2.18 0.00 39.65 3.67
138 139 2.954684 TACTCCTTGGTGCTGCCGG 61.955 63.158 0.00 0.00 41.21 6.13
139 140 1.741770 GTACTCCTTGGTGCTGCCG 60.742 63.158 0.00 0.00 41.21 5.69
140 141 0.955919 GTGTACTCCTTGGTGCTGCC 60.956 60.000 0.00 0.00 37.90 4.85
141 142 0.035458 AGTGTACTCCTTGGTGCTGC 59.965 55.000 0.00 0.00 0.00 5.25
142 143 2.550830 AAGTGTACTCCTTGGTGCTG 57.449 50.000 0.00 0.00 0.00 4.41
143 144 2.567615 CCTAAGTGTACTCCTTGGTGCT 59.432 50.000 8.16 0.00 0.00 4.40
144 145 2.354805 CCCTAAGTGTACTCCTTGGTGC 60.355 54.545 8.16 0.00 0.00 5.01
145 146 2.236395 CCCCTAAGTGTACTCCTTGGTG 59.764 54.545 8.16 0.00 0.00 4.17
146 147 2.547990 CCCCTAAGTGTACTCCTTGGT 58.452 52.381 8.16 0.00 0.00 3.67
147 148 1.209747 GCCCCTAAGTGTACTCCTTGG 59.790 57.143 8.16 5.72 0.00 3.61
148 149 2.093447 CAGCCCCTAAGTGTACTCCTTG 60.093 54.545 8.16 0.93 0.00 3.61
149 150 2.188817 CAGCCCCTAAGTGTACTCCTT 58.811 52.381 0.00 0.00 0.00 3.36
150 151 1.078989 ACAGCCCCTAAGTGTACTCCT 59.921 52.381 0.00 0.00 0.00 3.69
151 152 1.569653 ACAGCCCCTAAGTGTACTCC 58.430 55.000 0.00 0.00 0.00 3.85
152 153 3.335579 CAAACAGCCCCTAAGTGTACTC 58.664 50.000 0.00 0.00 0.00 2.59
153 154 2.039879 CCAAACAGCCCCTAAGTGTACT 59.960 50.000 0.00 0.00 0.00 2.73
154 155 2.039348 TCCAAACAGCCCCTAAGTGTAC 59.961 50.000 0.00 0.00 0.00 2.90
155 156 2.340731 TCCAAACAGCCCCTAAGTGTA 58.659 47.619 0.00 0.00 0.00 2.90
156 157 1.145571 TCCAAACAGCCCCTAAGTGT 58.854 50.000 0.00 0.00 0.00 3.55
157 158 2.369394 GATCCAAACAGCCCCTAAGTG 58.631 52.381 0.00 0.00 0.00 3.16
158 159 1.285078 GGATCCAAACAGCCCCTAAGT 59.715 52.381 6.95 0.00 0.00 2.24
159 160 1.410224 GGGATCCAAACAGCCCCTAAG 60.410 57.143 15.23 0.00 34.39 2.18
220 221 0.037590 ACCAAACGCATGCCTAAGGA 59.962 50.000 13.15 0.00 0.00 3.36
372 373 4.003648 CAGGAAAGCGGTGACTTTTATCT 58.996 43.478 0.00 0.00 39.93 1.98
636 649 4.792068 TCCCACAAATCACAGAAGAAAGT 58.208 39.130 0.00 0.00 0.00 2.66
996 1023 7.293073 AGCATAATGTTCTTTGGTCCATCTAT 58.707 34.615 0.00 0.00 0.00 1.98
1313 1341 2.037772 ACTTGCTCCTCCACAGTTACAG 59.962 50.000 0.00 0.00 0.00 2.74
1435 1463 3.330701 AGGAGACACAGGGCATCTAAAAA 59.669 43.478 0.00 0.00 0.00 1.94
1685 1713 8.640033 AAGGACTTTCTACCCCTAAATCTATT 57.360 34.615 0.00 0.00 0.00 1.73
1690 1718 5.044328 GGGAAAGGACTTTCTACCCCTAAAT 60.044 44.000 20.46 0.00 46.01 1.40
1872 4941 2.625282 AGTAGGTGACCTGCTACCTT 57.375 50.000 21.04 0.00 44.49 3.50
1921 4990 0.756294 TTTCTTCAGCGGACTCCACA 59.244 50.000 0.00 0.00 0.00 4.17
1983 5052 1.145900 TTGGGGCATTGGAGGAGGAA 61.146 55.000 0.00 0.00 0.00 3.36
2145 5214 5.619625 CTTGCAAACCCAAGTTTCAAAAA 57.380 34.783 0.00 0.00 44.47 1.94
2662 5764 5.918608 TGTTTGGCAAAAAGTTATGGCTTA 58.081 33.333 15.29 3.00 42.17 3.09
2719 5822 2.354805 CCTTAGGTTAGGTGTGGCAGAC 60.355 54.545 6.17 6.17 0.00 3.51
2855 5958 1.006758 TGTAGCCTGGCCAGTAGTAGT 59.993 52.381 30.63 10.93 0.00 2.73
2858 5961 0.252284 AGTGTAGCCTGGCCAGTAGT 60.252 55.000 30.63 16.89 0.00 2.73
2859 5962 0.905357 AAGTGTAGCCTGGCCAGTAG 59.095 55.000 30.63 17.77 0.00 2.57
2860 5963 1.829222 GTAAGTGTAGCCTGGCCAGTA 59.171 52.381 30.63 15.28 0.00 2.74
2861 5964 0.613777 GTAAGTGTAGCCTGGCCAGT 59.386 55.000 30.63 16.39 0.00 4.00
2862 5965 0.107654 GGTAAGTGTAGCCTGGCCAG 60.108 60.000 26.87 26.87 0.00 4.85
2863 5966 0.546747 AGGTAAGTGTAGCCTGGCCA 60.547 55.000 16.57 4.71 0.00 5.36
2864 5967 0.178301 GAGGTAAGTGTAGCCTGGCC 59.822 60.000 16.57 0.00 31.89 5.36
2865 5968 1.137282 GAGAGGTAAGTGTAGCCTGGC 59.863 57.143 11.65 11.65 31.89 4.85
2866 5969 2.741145 AGAGAGGTAAGTGTAGCCTGG 58.259 52.381 0.00 0.00 31.89 4.45
2867 5970 4.810191 AAAGAGAGGTAAGTGTAGCCTG 57.190 45.455 0.00 0.00 31.89 4.85
2868 5971 8.605325 TTATTAAAGAGAGGTAAGTGTAGCCT 57.395 34.615 0.00 0.00 34.93 4.58
2869 5972 9.833917 AATTATTAAAGAGAGGTAAGTGTAGCC 57.166 33.333 0.00 0.00 0.00 3.93
2929 6032 2.594131 CTCCCGGTCCTTTTCCTTTTT 58.406 47.619 0.00 0.00 0.00 1.94
2930 6033 1.822062 GCTCCCGGTCCTTTTCCTTTT 60.822 52.381 0.00 0.00 0.00 2.27
2931 6034 0.251209 GCTCCCGGTCCTTTTCCTTT 60.251 55.000 0.00 0.00 0.00 3.11
2932 6035 1.379146 GCTCCCGGTCCTTTTCCTT 59.621 57.895 0.00 0.00 0.00 3.36
2933 6036 1.842381 CTGCTCCCGGTCCTTTTCCT 61.842 60.000 0.00 0.00 0.00 3.36
2934 6037 1.377333 CTGCTCCCGGTCCTTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
2935 6038 1.377333 CCTGCTCCCGGTCCTTTTC 60.377 63.158 0.00 0.00 0.00 2.29
2936 6039 1.846124 TCCTGCTCCCGGTCCTTTT 60.846 57.895 0.00 0.00 0.00 2.27
2937 6040 2.203938 TCCTGCTCCCGGTCCTTT 60.204 61.111 0.00 0.00 0.00 3.11
2938 6041 3.003763 GTCCTGCTCCCGGTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
2946 6049 4.148825 ATGCGTCCGTCCTGCTCC 62.149 66.667 0.00 0.00 0.00 4.70
2947 6050 2.835701 TTCATGCGTCCGTCCTGCTC 62.836 60.000 0.00 0.00 0.00 4.26
2948 6051 2.942796 TTCATGCGTCCGTCCTGCT 61.943 57.895 0.00 0.00 0.00 4.24
2949 6052 2.434185 TTCATGCGTCCGTCCTGC 60.434 61.111 0.00 0.00 0.00 4.85
2950 6053 2.100631 GGTTCATGCGTCCGTCCTG 61.101 63.158 0.00 0.00 0.00 3.86
2951 6054 1.899437 ATGGTTCATGCGTCCGTCCT 61.899 55.000 0.00 0.00 0.00 3.85
2952 6055 1.449601 ATGGTTCATGCGTCCGTCC 60.450 57.895 0.00 0.00 0.00 4.79
2953 6056 0.739462 TCATGGTTCATGCGTCCGTC 60.739 55.000 3.23 0.00 41.18 4.79
2954 6057 0.107703 ATCATGGTTCATGCGTCCGT 60.108 50.000 3.23 0.00 41.18 4.69
2955 6058 0.305617 CATCATGGTTCATGCGTCCG 59.694 55.000 3.23 0.00 41.18 4.79
2956 6059 0.029834 GCATCATGGTTCATGCGTCC 59.970 55.000 1.77 0.00 41.18 4.79
2957 6060 3.539253 GCATCATGGTTCATGCGTC 57.461 52.632 1.77 0.00 41.18 5.19
2965 6068 2.736719 CGAGTCGAGAAGCATCATGGTT 60.737 50.000 6.73 0.48 41.25 3.67
2966 6069 1.202348 CGAGTCGAGAAGCATCATGGT 60.202 52.381 6.73 0.00 0.00 3.55
2967 6070 1.485397 CGAGTCGAGAAGCATCATGG 58.515 55.000 6.73 0.00 0.00 3.66
2968 6071 1.485397 CCGAGTCGAGAAGCATCATG 58.515 55.000 15.64 0.00 0.00 3.07
2969 6072 0.249238 GCCGAGTCGAGAAGCATCAT 60.249 55.000 15.64 0.00 0.00 2.45
2970 6073 1.139734 GCCGAGTCGAGAAGCATCA 59.860 57.895 15.64 0.00 0.00 3.07
2971 6074 1.590259 GGCCGAGTCGAGAAGCATC 60.590 63.158 15.64 0.00 0.00 3.91
2972 6075 2.496817 GGCCGAGTCGAGAAGCAT 59.503 61.111 15.64 0.00 0.00 3.79
2973 6076 4.116328 CGGCCGAGTCGAGAAGCA 62.116 66.667 24.07 0.00 29.41 3.91
2974 6077 4.856607 CCGGCCGAGTCGAGAAGC 62.857 72.222 30.73 8.61 29.41 3.86
2975 6078 3.441290 ACCGGCCGAGTCGAGAAG 61.441 66.667 30.73 8.96 29.41 2.85
2976 6079 3.744719 CACCGGCCGAGTCGAGAA 61.745 66.667 30.73 0.00 29.41 2.87
2981 6084 3.665675 AATCAGCACCGGCCGAGTC 62.666 63.158 30.73 14.67 42.56 3.36
2982 6085 3.706373 AATCAGCACCGGCCGAGT 61.706 61.111 30.73 20.44 42.56 4.18
2983 6086 3.197790 CAATCAGCACCGGCCGAG 61.198 66.667 30.73 20.26 42.56 4.63
2984 6087 4.776322 CCAATCAGCACCGGCCGA 62.776 66.667 30.73 5.29 42.56 5.54
2986 6089 3.443045 CACCAATCAGCACCGGCC 61.443 66.667 0.00 0.00 42.56 6.13
2987 6090 4.120331 GCACCAATCAGCACCGGC 62.120 66.667 0.00 0.00 41.61 6.13
2988 6091 3.803082 CGCACCAATCAGCACCGG 61.803 66.667 0.00 0.00 0.00 5.28
2989 6092 3.803082 CCGCACCAATCAGCACCG 61.803 66.667 0.00 0.00 0.00 4.94
2990 6093 4.120331 GCCGCACCAATCAGCACC 62.120 66.667 0.00 0.00 0.00 5.01
2991 6094 4.120331 GGCCGCACCAATCAGCAC 62.120 66.667 0.00 0.00 38.86 4.40
3005 6108 4.660938 GGGTGGGTGTCACTGGCC 62.661 72.222 2.35 0.00 45.38 5.36
3006 6109 3.850098 CTGGGTGGGTGTCACTGGC 62.850 68.421 2.35 0.00 45.38 4.85
3007 6110 2.431683 CTGGGTGGGTGTCACTGG 59.568 66.667 2.35 0.00 45.38 4.00
3008 6111 2.281761 GCTGGGTGGGTGTCACTG 60.282 66.667 2.35 0.00 45.38 3.66
3009 6112 2.448542 AGCTGGGTGGGTGTCACT 60.449 61.111 2.35 0.00 45.38 3.41
3010 6113 2.032681 GAGCTGGGTGGGTGTCAC 59.967 66.667 0.00 0.00 45.34 3.67
3011 6114 3.249189 GGAGCTGGGTGGGTGTCA 61.249 66.667 0.00 0.00 0.00 3.58
3012 6115 4.394712 CGGAGCTGGGTGGGTGTC 62.395 72.222 0.00 0.00 0.00 3.67
3024 6127 2.662091 ACAAACACTTTGCGCGGAGC 62.662 55.000 8.83 0.00 46.66 4.70
3025 6128 0.929824 CACAAACACTTTGCGCGGAG 60.930 55.000 8.83 5.50 44.39 4.63
3026 6129 1.063327 CACAAACACTTTGCGCGGA 59.937 52.632 8.83 0.00 44.39 5.54
3027 6130 1.226547 ACACAAACACTTTGCGCGG 60.227 52.632 8.83 0.00 44.39 6.46
3028 6131 0.796491 ACACACAAACACTTTGCGCG 60.796 50.000 0.00 0.00 44.39 6.86
3029 6132 0.639756 CACACACAAACACTTTGCGC 59.360 50.000 0.00 0.00 44.39 6.09
3030 6133 1.267365 CCACACACAAACACTTTGCG 58.733 50.000 0.00 0.00 44.39 4.85
3031 6134 0.998669 GCCACACACAAACACTTTGC 59.001 50.000 0.00 0.00 44.39 3.68
3032 6135 2.261345 CAGCCACACACAAACACTTTG 58.739 47.619 0.00 0.00 45.95 2.77
3033 6136 1.204467 CCAGCCACACACAAACACTTT 59.796 47.619 0.00 0.00 0.00 2.66
3034 6137 0.817013 CCAGCCACACACAAACACTT 59.183 50.000 0.00 0.00 0.00 3.16
3035 6138 0.034574 TCCAGCCACACACAAACACT 60.035 50.000 0.00 0.00 0.00 3.55
3036 6139 1.032014 ATCCAGCCACACACAAACAC 58.968 50.000 0.00 0.00 0.00 3.32
3037 6140 1.031235 CATCCAGCCACACACAAACA 58.969 50.000 0.00 0.00 0.00 2.83
3038 6141 1.317613 TCATCCAGCCACACACAAAC 58.682 50.000 0.00 0.00 0.00 2.93
3039 6142 1.680735 GTTCATCCAGCCACACACAAA 59.319 47.619 0.00 0.00 0.00 2.83
3040 6143 1.317613 GTTCATCCAGCCACACACAA 58.682 50.000 0.00 0.00 0.00 3.33
3041 6144 0.537143 GGTTCATCCAGCCACACACA 60.537 55.000 0.00 0.00 35.97 3.72
3042 6145 1.244019 GGGTTCATCCAGCCACACAC 61.244 60.000 0.00 0.00 38.11 3.82
3043 6146 1.074775 GGGTTCATCCAGCCACACA 59.925 57.895 0.00 0.00 38.11 3.72
3044 6147 0.678048 GAGGGTTCATCCAGCCACAC 60.678 60.000 0.00 0.00 36.72 3.82
3045 6148 1.685224 GAGGGTTCATCCAGCCACA 59.315 57.895 0.00 0.00 36.72 4.17
3046 6149 1.077429 GGAGGGTTCATCCAGCCAC 60.077 63.158 0.00 0.00 36.72 5.01
3047 6150 1.229951 AGGAGGGTTCATCCAGCCA 60.230 57.895 1.44 0.00 39.47 4.75
3048 6151 1.225704 CAGGAGGGTTCATCCAGCC 59.774 63.158 1.44 0.00 39.47 4.85
3049 6152 1.452833 GCAGGAGGGTTCATCCAGC 60.453 63.158 0.69 0.69 41.37 4.85
3050 6153 1.139853 GTAGCAGGAGGGTTCATCCAG 59.860 57.143 1.44 0.00 39.47 3.86
3051 6154 1.204146 GTAGCAGGAGGGTTCATCCA 58.796 55.000 1.44 0.00 39.47 3.41
3052 6155 1.414550 GAGTAGCAGGAGGGTTCATCC 59.585 57.143 0.00 0.00 37.07 3.51
3053 6156 1.414550 GGAGTAGCAGGAGGGTTCATC 59.585 57.143 0.00 0.00 0.00 2.92
3054 6157 1.273838 TGGAGTAGCAGGAGGGTTCAT 60.274 52.381 0.00 0.00 0.00 2.57
3055 6158 0.116342 TGGAGTAGCAGGAGGGTTCA 59.884 55.000 0.00 0.00 0.00 3.18
3056 6159 0.537653 GTGGAGTAGCAGGAGGGTTC 59.462 60.000 0.00 0.00 0.00 3.62
3057 6160 0.117340 AGTGGAGTAGCAGGAGGGTT 59.883 55.000 0.00 0.00 0.00 4.11
3058 6161 0.616111 CAGTGGAGTAGCAGGAGGGT 60.616 60.000 0.00 0.00 0.00 4.34
3059 6162 1.965754 GCAGTGGAGTAGCAGGAGGG 61.966 65.000 0.00 0.00 0.00 4.30
3060 6163 1.260538 TGCAGTGGAGTAGCAGGAGG 61.261 60.000 0.00 0.00 33.75 4.30
3061 6164 2.280835 TGCAGTGGAGTAGCAGGAG 58.719 57.895 0.00 0.00 33.75 3.69
3062 6165 4.539235 TGCAGTGGAGTAGCAGGA 57.461 55.556 0.00 0.00 33.75 3.86
3065 6168 2.176314 CTGCCTGCAGTGGAGTAGCA 62.176 60.000 13.81 12.38 39.10 3.49
3066 6169 1.449246 CTGCCTGCAGTGGAGTAGC 60.449 63.158 13.81 8.31 39.10 3.58
3067 6170 4.928398 CTGCCTGCAGTGGAGTAG 57.072 61.111 13.81 4.97 39.10 2.57
3091 6194 3.631487 GATGTTTGCCGGCACTGCC 62.631 63.158 32.95 17.45 46.75 4.85
3092 6195 2.126346 GATGTTTGCCGGCACTGC 60.126 61.111 32.95 22.05 39.63 4.40
3093 6196 0.457166 CATGATGTTTGCCGGCACTG 60.457 55.000 32.95 13.76 0.00 3.66
3094 6197 1.885157 CATGATGTTTGCCGGCACT 59.115 52.632 32.95 14.65 0.00 4.40
3095 6198 1.806758 GCATGATGTTTGCCGGCAC 60.807 57.895 32.95 20.33 33.95 5.01
3096 6199 0.679321 TAGCATGATGTTTGCCGGCA 60.679 50.000 29.03 29.03 41.06 5.69
3097 6200 0.455410 TTAGCATGATGTTTGCCGGC 59.545 50.000 22.73 22.73 41.06 6.13
3098 6201 2.937469 TTTAGCATGATGTTTGCCGG 57.063 45.000 0.00 0.00 41.06 6.13
3117 6220 5.049612 GCTTTGCGAGTTAGGTAGAGTTTTT 60.050 40.000 0.00 0.00 0.00 1.94
3118 6221 4.451435 GCTTTGCGAGTTAGGTAGAGTTTT 59.549 41.667 0.00 0.00 0.00 2.43
3119 6222 3.995048 GCTTTGCGAGTTAGGTAGAGTTT 59.005 43.478 0.00 0.00 0.00 2.66
3120 6223 3.586892 GCTTTGCGAGTTAGGTAGAGTT 58.413 45.455 0.00 0.00 0.00 3.01
3121 6224 2.094130 GGCTTTGCGAGTTAGGTAGAGT 60.094 50.000 0.00 0.00 0.00 3.24
3122 6225 2.541556 GGCTTTGCGAGTTAGGTAGAG 58.458 52.381 0.00 0.00 0.00 2.43
3123 6226 1.206371 GGGCTTTGCGAGTTAGGTAGA 59.794 52.381 0.00 0.00 0.00 2.59
3124 6227 1.066430 TGGGCTTTGCGAGTTAGGTAG 60.066 52.381 0.00 0.00 0.00 3.18
3125 6228 0.978151 TGGGCTTTGCGAGTTAGGTA 59.022 50.000 0.00 0.00 0.00 3.08
3126 6229 0.109723 TTGGGCTTTGCGAGTTAGGT 59.890 50.000 0.00 0.00 0.00 3.08
3127 6230 0.804989 CTTGGGCTTTGCGAGTTAGG 59.195 55.000 0.00 0.00 0.00 2.69
3128 6231 0.169009 GCTTGGGCTTTGCGAGTTAG 59.831 55.000 0.00 0.00 35.22 2.34
3129 6232 1.241315 GGCTTGGGCTTTGCGAGTTA 61.241 55.000 0.00 0.00 38.73 2.24
3130 6233 2.564721 GGCTTGGGCTTTGCGAGTT 61.565 57.895 0.00 0.00 38.73 3.01
3131 6234 2.985847 GGCTTGGGCTTTGCGAGT 60.986 61.111 0.00 0.00 38.73 4.18
3132 6235 2.985282 TGGCTTGGGCTTTGCGAG 60.985 61.111 0.00 0.00 38.73 5.03
3133 6236 2.985282 CTGGCTTGGGCTTTGCGA 60.985 61.111 0.00 0.00 38.73 5.10
3134 6237 3.297620 ACTGGCTTGGGCTTTGCG 61.298 61.111 0.00 0.00 38.73 4.85
3135 6238 2.151049 CTCACTGGCTTGGGCTTTGC 62.151 60.000 0.00 0.00 38.73 3.68
3136 6239 1.530013 CCTCACTGGCTTGGGCTTTG 61.530 60.000 0.00 0.00 38.73 2.77
3137 6240 1.228675 CCTCACTGGCTTGGGCTTT 60.229 57.895 0.00 0.00 38.73 3.51
3138 6241 1.719063 TTCCTCACTGGCTTGGGCTT 61.719 55.000 0.00 0.00 38.73 4.35
3139 6242 1.504275 ATTCCTCACTGGCTTGGGCT 61.504 55.000 0.00 0.00 38.73 5.19
3140 6243 1.000396 ATTCCTCACTGGCTTGGGC 60.000 57.895 0.00 0.00 35.26 5.36
3141 6244 0.329261 TCATTCCTCACTGGCTTGGG 59.671 55.000 0.00 0.00 35.26 4.12
3142 6245 1.271543 TGTCATTCCTCACTGGCTTGG 60.272 52.381 0.00 0.00 35.26 3.61
3143 6246 1.808945 GTGTCATTCCTCACTGGCTTG 59.191 52.381 0.00 0.00 35.26 4.01
3144 6247 1.421268 TGTGTCATTCCTCACTGGCTT 59.579 47.619 0.00 0.00 35.82 4.35
3145 6248 1.059098 TGTGTCATTCCTCACTGGCT 58.941 50.000 0.00 0.00 35.82 4.75
3146 6249 1.160137 GTGTGTCATTCCTCACTGGC 58.840 55.000 0.00 0.00 35.82 4.85
3147 6250 2.549064 TGTGTGTCATTCCTCACTGG 57.451 50.000 0.00 0.00 35.82 4.00
3148 6251 2.225019 GCTTGTGTGTCATTCCTCACTG 59.775 50.000 0.00 0.00 35.82 3.66
3149 6252 2.498167 GCTTGTGTGTCATTCCTCACT 58.502 47.619 0.00 0.00 35.82 3.41
3150 6253 1.537202 GGCTTGTGTGTCATTCCTCAC 59.463 52.381 0.00 0.00 35.43 3.51
3151 6254 1.142667 TGGCTTGTGTGTCATTCCTCA 59.857 47.619 0.00 0.00 0.00 3.86
3152 6255 1.537202 GTGGCTTGTGTGTCATTCCTC 59.463 52.381 0.00 0.00 0.00 3.71
3153 6256 1.133823 TGTGGCTTGTGTGTCATTCCT 60.134 47.619 0.00 0.00 0.00 3.36
3154 6257 1.317613 TGTGGCTTGTGTGTCATTCC 58.682 50.000 0.00 0.00 0.00 3.01
3155 6258 2.923605 GCATGTGGCTTGTGTGTCATTC 60.924 50.000 0.00 0.00 40.25 2.67
3156 6259 1.000060 GCATGTGGCTTGTGTGTCATT 60.000 47.619 0.00 0.00 40.25 2.57
3157 6260 0.599558 GCATGTGGCTTGTGTGTCAT 59.400 50.000 0.00 0.00 40.25 3.06
3158 6261 2.032170 GCATGTGGCTTGTGTGTCA 58.968 52.632 0.00 0.00 40.25 3.58
3159 6262 4.950744 GCATGTGGCTTGTGTGTC 57.049 55.556 0.00 0.00 40.25 3.67
3168 6271 3.205784 AGGAAAGAGATAGCATGTGGC 57.794 47.619 0.00 0.00 45.30 5.01
3169 6272 5.067023 GGAAAAGGAAAGAGATAGCATGTGG 59.933 44.000 0.00 0.00 0.00 4.17
3170 6273 5.067023 GGGAAAAGGAAAGAGATAGCATGTG 59.933 44.000 0.00 0.00 0.00 3.21
3171 6274 5.044550 AGGGAAAAGGAAAGAGATAGCATGT 60.045 40.000 0.00 0.00 0.00 3.21
3172 6275 5.444176 AGGGAAAAGGAAAGAGATAGCATG 58.556 41.667 0.00 0.00 0.00 4.06
3173 6276 5.723860 AGGGAAAAGGAAAGAGATAGCAT 57.276 39.130 0.00 0.00 0.00 3.79
3174 6277 5.520748 AAGGGAAAAGGAAAGAGATAGCA 57.479 39.130 0.00 0.00 0.00 3.49
3175 6278 6.661377 AGAAAAGGGAAAAGGAAAGAGATAGC 59.339 38.462 0.00 0.00 0.00 2.97
3176 6279 8.642935 AAGAAAAGGGAAAAGGAAAGAGATAG 57.357 34.615 0.00 0.00 0.00 2.08
3177 6280 9.434275 AAAAGAAAAGGGAAAAGGAAAGAGATA 57.566 29.630 0.00 0.00 0.00 1.98
3178 6281 7.921041 AAAGAAAAGGGAAAAGGAAAGAGAT 57.079 32.000 0.00 0.00 0.00 2.75
3179 6282 7.733773 AAAAGAAAAGGGAAAAGGAAAGAGA 57.266 32.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.