Multiple sequence alignment - TraesCS1A01G291000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G291000 chr1A 100.000 4609 0 0 1 4609 487315148 487310540 0.000000e+00 8512.0
1 TraesCS1A01G291000 chr1B 96.291 3909 116 8 715 4609 520900861 520896968 0.000000e+00 6388.0
2 TraesCS1A01G291000 chr1B 93.377 151 10 0 352 502 520901600 520901450 1.670000e-54 224.0
3 TraesCS1A01G291000 chr1D 95.439 4012 109 25 568 4563 387555113 387551160 0.000000e+00 6327.0
4 TraesCS1A01G291000 chr1D 92.908 141 10 0 354 494 387556631 387556491 6.040000e-49 206.0
5 TraesCS1A01G291000 chrUn 86.875 160 14 5 86 241 63257769 63257925 6.130000e-39 172.0
6 TraesCS1A01G291000 chr2D 86.709 158 16 3 87 241 616647049 616646894 2.210000e-38 171.0
7 TraesCS1A01G291000 chr2D 85.057 87 13 0 1 87 82233186 82233100 6.350000e-14 89.8
8 TraesCS1A01G291000 chr2D 83.908 87 14 0 1 87 189538645 189538731 2.960000e-12 84.2
9 TraesCS1A01G291000 chr7D 86.250 160 16 4 87 241 628543015 628543173 7.930000e-38 169.0
10 TraesCS1A01G291000 chr7D 86.076 158 18 2 87 241 626207645 626207801 2.850000e-37 167.0
11 TraesCS1A01G291000 chr5B 79.752 242 42 5 87 325 476251336 476251099 7.930000e-38 169.0
12 TraesCS1A01G291000 chr5B 87.356 87 11 0 1 87 306464166 306464252 2.930000e-17 100.0
13 TraesCS1A01G291000 chr5B 87.654 81 7 3 8 87 301193205 301193283 1.770000e-14 91.6
14 TraesCS1A01G291000 chr5B 85.227 88 10 3 1 87 301191652 301191737 2.280000e-13 87.9
15 TraesCS1A01G291000 chr5D 86.164 159 17 3 86 241 345078087 345078243 2.850000e-37 167.0
16 TraesCS1A01G291000 chr2A 85.714 161 17 4 86 241 706223898 706223739 1.030000e-36 165.0
17 TraesCS1A01G291000 chr6D 85.276 163 19 3 84 241 147646750 147646588 3.690000e-36 163.0
18 TraesCS1A01G291000 chr4B 84.848 165 19 4 87 248 47625724 47625885 1.330000e-35 161.0
19 TraesCS1A01G291000 chr3D 87.356 87 11 0 1 87 491989647 491989561 2.930000e-17 100.0
20 TraesCS1A01G291000 chr4A 85.393 89 8 4 1 88 458232343 458232259 2.280000e-13 87.9
21 TraesCS1A01G291000 chr4A 85.227 88 8 4 1 87 458516279 458516196 8.220000e-13 86.1
22 TraesCS1A01G291000 chr3B 83.908 87 14 0 1 87 391653756 391653670 2.960000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G291000 chr1A 487310540 487315148 4608 True 8512.0 8512 100.0000 1 4609 1 chr1A.!!$R1 4608
1 TraesCS1A01G291000 chr1B 520896968 520901600 4632 True 3306.0 6388 94.8340 352 4609 2 chr1B.!!$R1 4257
2 TraesCS1A01G291000 chr1D 387551160 387556631 5471 True 3266.5 6327 94.1735 354 4563 2 chr1D.!!$R1 4209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.036732 CATGCCCACTATACCGCCAT 59.963 55.0 0.00 0.00 0.00 4.40 F
30 31 0.243907 CCACTATACCGCCATCCTCG 59.756 60.0 0.00 0.00 0.00 4.63 F
169 170 0.247655 CGCGATGAATTCAACGGTGG 60.248 55.0 31.05 11.32 41.52 4.61 F
1601 2974 0.179000 GAGTCGGCTCCCACATGAAT 59.821 55.0 5.50 0.00 35.76 2.57 F
2052 3425 0.321564 TGGTGGCGATTCTGTTCAGG 60.322 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 2719 0.097325 GCTCGCTAGATATCCGGTCG 59.903 60.0 0.00 0.0 0.00 4.79 R
1601 2974 0.984230 CTTCCAGTGCCCTGTCCTTA 59.016 55.0 0.00 0.0 36.95 2.69 R
2052 3425 0.533032 AGGTCAAGCTTAGCCTCGTC 59.467 55.0 13.45 0.0 0.00 4.20 R
3032 4405 0.518636 CCTGTGCATCGGTCAACTTG 59.481 55.0 0.00 0.0 0.00 3.16 R
4011 5384 0.394192 TGCTGAACAGACCACCAGAG 59.606 55.0 5.97 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.325870 CATACACATGCCCACTATACCG 58.674 50.000 0.00 0.00 0.00 4.02
22 23 0.179056 ACACATGCCCACTATACCGC 60.179 55.000 0.00 0.00 0.00 5.68
23 24 0.884704 CACATGCCCACTATACCGCC 60.885 60.000 0.00 0.00 0.00 6.13
24 25 1.341913 ACATGCCCACTATACCGCCA 61.342 55.000 0.00 0.00 0.00 5.69
25 26 0.036732 CATGCCCACTATACCGCCAT 59.963 55.000 0.00 0.00 0.00 4.40
26 27 0.324943 ATGCCCACTATACCGCCATC 59.675 55.000 0.00 0.00 0.00 3.51
27 28 1.003718 GCCCACTATACCGCCATCC 60.004 63.158 0.00 0.00 0.00 3.51
28 29 1.481056 GCCCACTATACCGCCATCCT 61.481 60.000 0.00 0.00 0.00 3.24
29 30 0.608640 CCCACTATACCGCCATCCTC 59.391 60.000 0.00 0.00 0.00 3.71
30 31 0.243907 CCACTATACCGCCATCCTCG 59.756 60.000 0.00 0.00 0.00 4.63
31 32 0.959553 CACTATACCGCCATCCTCGT 59.040 55.000 0.00 0.00 0.00 4.18
32 33 1.340248 CACTATACCGCCATCCTCGTT 59.660 52.381 0.00 0.00 0.00 3.85
33 34 2.555325 CACTATACCGCCATCCTCGTTA 59.445 50.000 0.00 0.00 0.00 3.18
34 35 3.192844 CACTATACCGCCATCCTCGTTAT 59.807 47.826 0.00 0.00 0.00 1.89
35 36 3.442977 ACTATACCGCCATCCTCGTTATC 59.557 47.826 0.00 0.00 0.00 1.75
36 37 0.594602 TACCGCCATCCTCGTTATCG 59.405 55.000 0.00 0.00 38.55 2.92
37 38 1.372997 CCGCCATCCTCGTTATCGG 60.373 63.158 0.00 0.00 37.69 4.18
38 39 1.362717 CGCCATCCTCGTTATCGGT 59.637 57.895 0.00 0.00 37.69 4.69
39 40 0.249322 CGCCATCCTCGTTATCGGTT 60.249 55.000 0.00 0.00 37.69 4.44
40 41 1.805120 CGCCATCCTCGTTATCGGTTT 60.805 52.381 0.00 0.00 37.69 3.27
41 42 2.285977 GCCATCCTCGTTATCGGTTTT 58.714 47.619 0.00 0.00 37.69 2.43
42 43 2.031683 GCCATCCTCGTTATCGGTTTTG 59.968 50.000 0.00 0.00 37.69 2.44
43 44 3.267483 CCATCCTCGTTATCGGTTTTGT 58.733 45.455 0.00 0.00 37.69 2.83
44 45 3.687698 CCATCCTCGTTATCGGTTTTGTT 59.312 43.478 0.00 0.00 37.69 2.83
45 46 4.201783 CCATCCTCGTTATCGGTTTTGTTC 60.202 45.833 0.00 0.00 37.69 3.18
46 47 4.261578 TCCTCGTTATCGGTTTTGTTCT 57.738 40.909 0.00 0.00 37.69 3.01
47 48 4.634199 TCCTCGTTATCGGTTTTGTTCTT 58.366 39.130 0.00 0.00 37.69 2.52
48 49 4.687483 TCCTCGTTATCGGTTTTGTTCTTC 59.313 41.667 0.00 0.00 37.69 2.87
49 50 4.689345 CCTCGTTATCGGTTTTGTTCTTCT 59.311 41.667 0.00 0.00 37.69 2.85
50 51 5.178809 CCTCGTTATCGGTTTTGTTCTTCTT 59.821 40.000 0.00 0.00 37.69 2.52
51 52 6.293244 CCTCGTTATCGGTTTTGTTCTTCTTT 60.293 38.462 0.00 0.00 37.69 2.52
52 53 6.652245 TCGTTATCGGTTTTGTTCTTCTTTC 58.348 36.000 0.00 0.00 37.69 2.62
53 54 6.480981 TCGTTATCGGTTTTGTTCTTCTTTCT 59.519 34.615 0.00 0.00 37.69 2.52
54 55 6.790825 CGTTATCGGTTTTGTTCTTCTTTCTC 59.209 38.462 0.00 0.00 0.00 2.87
55 56 7.517734 CGTTATCGGTTTTGTTCTTCTTTCTCA 60.518 37.037 0.00 0.00 0.00 3.27
56 57 6.884280 ATCGGTTTTGTTCTTCTTTCTCAT 57.116 33.333 0.00 0.00 0.00 2.90
57 58 6.693315 TCGGTTTTGTTCTTCTTTCTCATT 57.307 33.333 0.00 0.00 0.00 2.57
58 59 7.795482 TCGGTTTTGTTCTTCTTTCTCATTA 57.205 32.000 0.00 0.00 0.00 1.90
59 60 8.215926 TCGGTTTTGTTCTTCTTTCTCATTAA 57.784 30.769 0.00 0.00 0.00 1.40
60 61 8.679100 TCGGTTTTGTTCTTCTTTCTCATTAAA 58.321 29.630 0.00 0.00 0.00 1.52
61 62 9.463443 CGGTTTTGTTCTTCTTTCTCATTAAAT 57.537 29.630 0.00 0.00 0.00 1.40
67 68 9.663904 TGTTCTTCTTTCTCATTAAATTGTTCG 57.336 29.630 0.00 0.00 0.00 3.95
68 69 9.878599 GTTCTTCTTTCTCATTAAATTGTTCGA 57.121 29.630 0.00 0.00 0.00 3.71
70 71 8.230486 TCTTCTTTCTCATTAAATTGTTCGAGC 58.770 33.333 0.00 0.00 0.00 5.03
71 72 7.433708 TCTTTCTCATTAAATTGTTCGAGCA 57.566 32.000 0.00 0.00 0.00 4.26
72 73 8.044060 TCTTTCTCATTAAATTGTTCGAGCAT 57.956 30.769 1.75 0.00 0.00 3.79
73 74 8.177663 TCTTTCTCATTAAATTGTTCGAGCATC 58.822 33.333 1.75 0.00 0.00 3.91
74 75 6.363577 TCTCATTAAATTGTTCGAGCATCC 57.636 37.500 1.75 0.00 0.00 3.51
75 76 6.115446 TCTCATTAAATTGTTCGAGCATCCT 58.885 36.000 1.75 0.00 0.00 3.24
76 77 6.599244 TCTCATTAAATTGTTCGAGCATCCTT 59.401 34.615 1.75 0.00 0.00 3.36
77 78 6.554419 TCATTAAATTGTTCGAGCATCCTTG 58.446 36.000 1.75 0.00 0.00 3.61
78 79 5.957842 TTAAATTGTTCGAGCATCCTTGT 57.042 34.783 1.75 0.00 0.00 3.16
79 80 3.837213 AATTGTTCGAGCATCCTTGTG 57.163 42.857 1.75 0.00 0.00 3.33
80 81 2.542020 TTGTTCGAGCATCCTTGTGA 57.458 45.000 1.75 0.00 0.00 3.58
81 82 1.795768 TGTTCGAGCATCCTTGTGAC 58.204 50.000 0.00 0.00 0.00 3.67
82 83 0.716108 GTTCGAGCATCCTTGTGACG 59.284 55.000 0.00 0.00 0.00 4.35
83 84 0.317160 TTCGAGCATCCTTGTGACGT 59.683 50.000 0.00 0.00 0.00 4.34
84 85 1.170442 TCGAGCATCCTTGTGACGTA 58.830 50.000 0.00 0.00 0.00 3.57
85 86 1.132453 TCGAGCATCCTTGTGACGTAG 59.868 52.381 0.00 0.00 0.00 3.51
111 112 6.448053 TTTTCAGTGAAGAATAGTTCGTCG 57.552 37.500 5.56 0.00 40.41 5.12
112 113 5.366829 TTCAGTGAAGAATAGTTCGTCGA 57.633 39.130 0.08 0.00 40.41 4.20
113 114 5.366829 TCAGTGAAGAATAGTTCGTCGAA 57.633 39.130 2.90 2.90 40.41 3.71
114 115 5.950883 TCAGTGAAGAATAGTTCGTCGAAT 58.049 37.500 11.45 3.33 40.41 3.34
115 116 6.028368 TCAGTGAAGAATAGTTCGTCGAATC 58.972 40.000 11.45 4.60 40.41 2.52
116 117 5.230306 CAGTGAAGAATAGTTCGTCGAATCC 59.770 44.000 11.45 0.00 40.41 3.01
117 118 5.125739 AGTGAAGAATAGTTCGTCGAATCCT 59.874 40.000 11.45 7.12 40.41 3.24
118 119 6.318144 AGTGAAGAATAGTTCGTCGAATCCTA 59.682 38.462 11.45 9.15 40.41 2.94
119 120 7.013464 AGTGAAGAATAGTTCGTCGAATCCTAT 59.987 37.037 11.45 10.99 40.41 2.57
120 121 7.324135 GTGAAGAATAGTTCGTCGAATCCTATC 59.676 40.741 11.45 6.77 40.41 2.08
121 122 6.879276 AGAATAGTTCGTCGAATCCTATCA 57.121 37.500 11.45 0.00 34.02 2.15
122 123 7.273320 AGAATAGTTCGTCGAATCCTATCAA 57.727 36.000 11.45 0.00 34.02 2.57
123 124 7.140048 AGAATAGTTCGTCGAATCCTATCAAC 58.860 38.462 11.45 9.12 34.02 3.18
124 125 4.713824 AGTTCGTCGAATCCTATCAACA 57.286 40.909 11.45 0.00 0.00 3.33
125 126 4.421948 AGTTCGTCGAATCCTATCAACAC 58.578 43.478 11.45 0.00 0.00 3.32
126 127 4.082408 AGTTCGTCGAATCCTATCAACACA 60.082 41.667 11.45 0.00 0.00 3.72
127 128 4.443913 TCGTCGAATCCTATCAACACAA 57.556 40.909 0.00 0.00 0.00 3.33
128 129 4.421058 TCGTCGAATCCTATCAACACAAG 58.579 43.478 0.00 0.00 0.00 3.16
129 130 4.157105 TCGTCGAATCCTATCAACACAAGA 59.843 41.667 0.00 0.00 0.00 3.02
130 131 5.043903 CGTCGAATCCTATCAACACAAGAT 58.956 41.667 0.00 0.00 0.00 2.40
131 132 5.174035 CGTCGAATCCTATCAACACAAGATC 59.826 44.000 0.00 0.00 0.00 2.75
132 133 6.276847 GTCGAATCCTATCAACACAAGATCT 58.723 40.000 0.00 0.00 0.00 2.75
133 134 7.426410 GTCGAATCCTATCAACACAAGATCTA 58.574 38.462 0.00 0.00 0.00 1.98
134 135 7.593273 GTCGAATCCTATCAACACAAGATCTAG 59.407 40.741 0.00 0.00 0.00 2.43
135 136 7.285629 TCGAATCCTATCAACACAAGATCTAGT 59.714 37.037 0.00 0.00 0.00 2.57
136 137 7.923344 CGAATCCTATCAACACAAGATCTAGTT 59.077 37.037 0.00 0.00 0.00 2.24
137 138 9.606631 GAATCCTATCAACACAAGATCTAGTTT 57.393 33.333 0.00 0.00 0.00 2.66
138 139 9.965902 AATCCTATCAACACAAGATCTAGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
139 140 8.777865 TCCTATCAACACAAGATCTAGTTTTG 57.222 34.615 0.00 0.00 0.00 2.44
140 141 8.593679 TCCTATCAACACAAGATCTAGTTTTGA 58.406 33.333 0.00 4.04 38.38 2.69
141 142 9.219603 CCTATCAACACAAGATCTAGTTTTGAA 57.780 33.333 11.60 4.26 37.78 2.69
143 144 8.908786 ATCAACACAAGATCTAGTTTTGAAGA 57.091 30.769 11.60 5.16 37.78 2.87
144 145 8.908786 TCAACACAAGATCTAGTTTTGAAGAT 57.091 30.769 0.00 0.00 33.12 2.40
145 146 8.993121 TCAACACAAGATCTAGTTTTGAAGATC 58.007 33.333 0.00 4.52 33.12 2.75
146 147 8.997323 CAACACAAGATCTAGTTTTGAAGATCT 58.003 33.333 8.65 8.65 46.41 2.75
147 148 8.770438 ACACAAGATCTAGTTTTGAAGATCTC 57.230 34.615 13.60 0.00 44.48 2.75
148 149 7.543868 ACACAAGATCTAGTTTTGAAGATCTCG 59.456 37.037 13.60 6.95 44.48 4.04
149 150 7.757173 CACAAGATCTAGTTTTGAAGATCTCGA 59.243 37.037 13.60 0.00 44.48 4.04
150 151 7.757624 ACAAGATCTAGTTTTGAAGATCTCGAC 59.242 37.037 13.60 0.00 44.48 4.20
151 152 6.491394 AGATCTAGTTTTGAAGATCTCGACG 58.509 40.000 8.65 0.00 42.45 5.12
152 153 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
153 154 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
154 155 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
155 156 2.561733 TTTGAAGATCTCGACGCGAT 57.438 45.000 15.93 0.00 34.61 4.58
156 157 1.827578 TTGAAGATCTCGACGCGATG 58.172 50.000 15.93 4.17 34.61 3.84
157 158 1.014352 TGAAGATCTCGACGCGATGA 58.986 50.000 15.93 9.21 34.61 2.92
158 159 1.400494 TGAAGATCTCGACGCGATGAA 59.600 47.619 15.93 1.63 34.61 2.57
159 160 2.033424 TGAAGATCTCGACGCGATGAAT 59.967 45.455 15.93 6.44 34.61 2.57
160 161 2.783828 AGATCTCGACGCGATGAATT 57.216 45.000 15.93 0.00 34.61 2.17
161 162 2.656085 AGATCTCGACGCGATGAATTC 58.344 47.619 15.93 9.26 34.61 2.17
162 163 2.033424 AGATCTCGACGCGATGAATTCA 59.967 45.455 15.93 11.26 34.61 2.57
163 164 2.271821 TCTCGACGCGATGAATTCAA 57.728 45.000 15.93 0.00 34.61 2.69
164 165 1.917955 TCTCGACGCGATGAATTCAAC 59.082 47.619 15.93 9.07 34.61 3.18
165 166 0.638242 TCGACGCGATGAATTCAACG 59.362 50.000 27.79 27.79 43.60 4.10
166 167 0.314259 CGACGCGATGAATTCAACGG 60.314 55.000 31.05 24.16 41.52 4.44
167 168 0.719465 GACGCGATGAATTCAACGGT 59.281 50.000 31.05 26.45 41.52 4.83
168 169 0.442310 ACGCGATGAATTCAACGGTG 59.558 50.000 31.05 22.13 41.52 4.94
169 170 0.247655 CGCGATGAATTCAACGGTGG 60.248 55.000 31.05 11.32 41.52 4.61
170 171 1.083489 GCGATGAATTCAACGGTGGA 58.917 50.000 31.05 0.00 41.52 4.02
171 172 1.466950 GCGATGAATTCAACGGTGGAA 59.533 47.619 31.05 0.00 41.52 3.53
172 173 2.095466 GCGATGAATTCAACGGTGGAAA 60.095 45.455 31.05 0.00 41.52 3.13
173 174 3.488489 CGATGAATTCAACGGTGGAAAC 58.512 45.455 25.38 1.02 38.28 2.78
174 175 3.488489 GATGAATTCAACGGTGGAAACG 58.512 45.455 13.09 0.00 37.36 3.60
175 176 1.604755 TGAATTCAACGGTGGAAACGG 59.395 47.619 5.45 0.00 35.23 4.44
176 177 1.605232 GAATTCAACGGTGGAAACGGT 59.395 47.619 0.00 0.00 35.23 4.83
177 178 1.682740 ATTCAACGGTGGAAACGGTT 58.317 45.000 0.00 0.00 34.23 4.44
178 179 1.015868 TTCAACGGTGGAAACGGTTC 58.984 50.000 4.08 4.08 32.10 3.62
179 180 1.152989 TCAACGGTGGAAACGGTTCG 61.153 55.000 7.19 0.00 34.28 3.95
180 181 1.143620 AACGGTGGAAACGGTTCGA 59.856 52.632 7.19 0.00 34.28 3.71
181 182 0.877213 AACGGTGGAAACGGTTCGAG 60.877 55.000 7.19 0.82 34.28 4.04
182 183 1.007038 CGGTGGAAACGGTTCGAGA 60.007 57.895 7.19 0.00 34.28 4.04
183 184 0.389426 CGGTGGAAACGGTTCGAGAT 60.389 55.000 7.19 0.00 34.28 2.75
184 185 1.804601 GGTGGAAACGGTTCGAGATT 58.195 50.000 7.19 0.00 34.28 2.40
185 186 2.148768 GGTGGAAACGGTTCGAGATTT 58.851 47.619 7.19 0.00 34.28 2.17
186 187 2.095919 GGTGGAAACGGTTCGAGATTTG 60.096 50.000 7.19 0.00 34.28 2.32
187 188 2.095919 GTGGAAACGGTTCGAGATTTGG 60.096 50.000 7.19 0.00 34.28 3.28
188 189 2.224329 TGGAAACGGTTCGAGATTTGGA 60.224 45.455 7.19 0.00 34.28 3.53
189 190 2.159037 GGAAACGGTTCGAGATTTGGAC 59.841 50.000 7.19 0.00 34.28 4.02
190 191 1.425412 AACGGTTCGAGATTTGGACG 58.575 50.000 0.00 0.00 0.00 4.79
191 192 0.599558 ACGGTTCGAGATTTGGACGA 59.400 50.000 0.00 0.00 0.00 4.20
192 193 1.000060 ACGGTTCGAGATTTGGACGAA 60.000 47.619 0.00 0.00 42.29 3.85
195 196 1.705256 TTCGAGATTTGGACGAACGG 58.295 50.000 0.00 0.00 40.26 4.44
196 197 0.599558 TCGAGATTTGGACGAACGGT 59.400 50.000 0.00 0.00 33.20 4.83
197 198 1.000060 TCGAGATTTGGACGAACGGTT 60.000 47.619 0.00 0.00 33.20 4.44
198 199 1.796459 CGAGATTTGGACGAACGGTTT 59.204 47.619 0.00 0.00 0.00 3.27
199 200 2.222445 CGAGATTTGGACGAACGGTTTT 59.778 45.455 0.00 0.00 0.00 2.43
200 201 3.551551 GAGATTTGGACGAACGGTTTTG 58.448 45.455 0.00 0.00 0.00 2.44
201 202 3.207778 AGATTTGGACGAACGGTTTTGA 58.792 40.909 0.00 0.00 0.00 2.69
202 203 3.818773 AGATTTGGACGAACGGTTTTGAT 59.181 39.130 0.00 0.00 0.00 2.57
203 204 4.998672 AGATTTGGACGAACGGTTTTGATA 59.001 37.500 0.00 0.00 0.00 2.15
204 205 5.470777 AGATTTGGACGAACGGTTTTGATAA 59.529 36.000 0.00 0.00 0.00 1.75
205 206 5.496133 TTTGGACGAACGGTTTTGATAAA 57.504 34.783 0.00 0.00 0.00 1.40
206 207 5.496133 TTGGACGAACGGTTTTGATAAAA 57.504 34.783 0.00 0.00 0.00 1.52
237 238 8.648557 TGAATAAACGAATCTATGAGAACAGG 57.351 34.615 0.00 0.00 0.00 4.00
238 239 8.474831 TGAATAAACGAATCTATGAGAACAGGA 58.525 33.333 0.00 0.00 0.00 3.86
239 240 9.314321 GAATAAACGAATCTATGAGAACAGGAA 57.686 33.333 0.00 0.00 0.00 3.36
240 241 9.667107 AATAAACGAATCTATGAGAACAGGAAA 57.333 29.630 0.00 0.00 0.00 3.13
241 242 7.602517 AAACGAATCTATGAGAACAGGAAAG 57.397 36.000 0.00 0.00 0.00 2.62
242 243 6.531503 ACGAATCTATGAGAACAGGAAAGA 57.468 37.500 0.00 0.00 0.00 2.52
243 244 6.936279 ACGAATCTATGAGAACAGGAAAGAA 58.064 36.000 0.00 0.00 0.00 2.52
244 245 7.386851 ACGAATCTATGAGAACAGGAAAGAAA 58.613 34.615 0.00 0.00 0.00 2.52
245 246 7.878127 ACGAATCTATGAGAACAGGAAAGAAAA 59.122 33.333 0.00 0.00 0.00 2.29
246 247 8.887717 CGAATCTATGAGAACAGGAAAGAAAAT 58.112 33.333 0.00 0.00 0.00 1.82
252 253 6.970484 TGAGAACAGGAAAGAAAATTAGTGC 58.030 36.000 0.00 0.00 0.00 4.40
253 254 6.002062 AGAACAGGAAAGAAAATTAGTGCG 57.998 37.500 0.00 0.00 0.00 5.34
254 255 4.160736 ACAGGAAAGAAAATTAGTGCGC 57.839 40.909 0.00 0.00 0.00 6.09
255 256 3.821033 ACAGGAAAGAAAATTAGTGCGCT 59.179 39.130 9.73 4.58 0.00 5.92
256 257 5.001232 ACAGGAAAGAAAATTAGTGCGCTA 58.999 37.500 9.73 1.99 0.00 4.26
257 258 5.106673 ACAGGAAAGAAAATTAGTGCGCTAC 60.107 40.000 9.73 5.32 0.00 3.58
258 259 5.122396 CAGGAAAGAAAATTAGTGCGCTACT 59.878 40.000 9.73 13.16 43.56 2.57
259 260 5.705905 AGGAAAGAAAATTAGTGCGCTACTT 59.294 36.000 9.73 5.19 40.89 2.24
260 261 5.795441 GGAAAGAAAATTAGTGCGCTACTTG 59.205 40.000 9.73 0.00 40.89 3.16
261 262 4.946784 AGAAAATTAGTGCGCTACTTGG 57.053 40.909 9.73 0.00 40.89 3.61
262 263 3.127030 AGAAAATTAGTGCGCTACTTGGC 59.873 43.478 9.73 4.36 40.89 4.52
277 278 4.785453 GGCGCAACCAGGGGAGAG 62.785 72.222 10.83 0.00 38.86 3.20
278 279 3.706373 GCGCAACCAGGGGAGAGA 61.706 66.667 0.30 0.00 0.00 3.10
279 280 2.266055 CGCAACCAGGGGAGAGAC 59.734 66.667 0.00 0.00 0.00 3.36
280 281 2.266055 GCAACCAGGGGAGAGACG 59.734 66.667 0.00 0.00 0.00 4.18
281 282 2.982130 CAACCAGGGGAGAGACGG 59.018 66.667 0.00 0.00 0.00 4.79
282 283 1.609501 CAACCAGGGGAGAGACGGA 60.610 63.158 0.00 0.00 0.00 4.69
283 284 1.157751 AACCAGGGGAGAGACGGAA 59.842 57.895 0.00 0.00 0.00 4.30
284 285 0.905337 AACCAGGGGAGAGACGGAAG 60.905 60.000 0.00 0.00 0.00 3.46
297 298 2.457366 ACGGAAGTGACCTTTGCTAG 57.543 50.000 0.00 0.00 46.97 3.42
298 299 1.079503 CGGAAGTGACCTTTGCTAGC 58.920 55.000 8.10 8.10 0.00 3.42
299 300 1.608025 CGGAAGTGACCTTTGCTAGCA 60.608 52.381 14.93 14.93 0.00 3.49
300 301 2.079925 GGAAGTGACCTTTGCTAGCAG 58.920 52.381 18.45 9.26 0.00 4.24
301 302 2.551071 GGAAGTGACCTTTGCTAGCAGT 60.551 50.000 18.45 12.76 0.00 4.40
302 303 3.306780 GGAAGTGACCTTTGCTAGCAGTA 60.307 47.826 18.45 9.36 0.00 2.74
303 304 3.320673 AGTGACCTTTGCTAGCAGTAC 57.679 47.619 18.45 11.31 0.00 2.73
304 305 2.900546 AGTGACCTTTGCTAGCAGTACT 59.099 45.455 18.45 13.20 0.00 2.73
305 306 3.056465 AGTGACCTTTGCTAGCAGTACTC 60.056 47.826 18.45 11.75 0.00 2.59
306 307 2.233922 TGACCTTTGCTAGCAGTACTCC 59.766 50.000 18.45 7.70 0.00 3.85
307 308 2.498078 GACCTTTGCTAGCAGTACTCCT 59.502 50.000 18.45 0.00 0.00 3.69
308 309 2.907042 ACCTTTGCTAGCAGTACTCCTT 59.093 45.455 18.45 0.00 0.00 3.36
309 310 4.094476 ACCTTTGCTAGCAGTACTCCTTA 58.906 43.478 18.45 0.00 0.00 2.69
310 311 4.530946 ACCTTTGCTAGCAGTACTCCTTAA 59.469 41.667 18.45 5.04 0.00 1.85
311 312 5.189934 ACCTTTGCTAGCAGTACTCCTTAAT 59.810 40.000 18.45 0.00 0.00 1.40
312 313 6.116126 CCTTTGCTAGCAGTACTCCTTAATT 58.884 40.000 18.45 0.00 0.00 1.40
313 314 7.093024 ACCTTTGCTAGCAGTACTCCTTAATTA 60.093 37.037 18.45 0.00 0.00 1.40
314 315 7.769044 CCTTTGCTAGCAGTACTCCTTAATTAA 59.231 37.037 18.45 3.11 0.00 1.40
315 316 9.331282 CTTTGCTAGCAGTACTCCTTAATTAAT 57.669 33.333 18.45 0.00 0.00 1.40
316 317 8.662781 TTGCTAGCAGTACTCCTTAATTAATG 57.337 34.615 18.45 0.00 0.00 1.90
317 318 6.706270 TGCTAGCAGTACTCCTTAATTAATGC 59.294 38.462 14.93 8.86 37.14 3.56
318 319 6.931840 GCTAGCAGTACTCCTTAATTAATGCT 59.068 38.462 18.88 18.88 45.99 3.79
319 320 7.442666 GCTAGCAGTACTCCTTAATTAATGCTT 59.557 37.037 19.69 8.94 42.77 3.91
320 321 9.331282 CTAGCAGTACTCCTTAATTAATGCTTT 57.669 33.333 19.69 5.55 42.77 3.51
321 322 8.214721 AGCAGTACTCCTTAATTAATGCTTTC 57.785 34.615 12.31 0.00 42.77 2.62
322 323 7.011482 AGCAGTACTCCTTAATTAATGCTTTCG 59.989 37.037 12.31 0.00 42.77 3.46
323 324 7.201617 GCAGTACTCCTTAATTAATGCTTTCGT 60.202 37.037 9.42 0.56 34.72 3.85
324 325 9.309516 CAGTACTCCTTAATTAATGCTTTCGTA 57.690 33.333 0.00 0.00 0.00 3.43
325 326 9.880157 AGTACTCCTTAATTAATGCTTTCGTAA 57.120 29.630 0.00 0.00 0.00 3.18
395 396 2.737252 GCACTTAGAAACGCTACAAGCT 59.263 45.455 0.00 0.00 39.60 3.74
482 483 1.144936 CTGGGCCTGGATCGTTCTC 59.855 63.158 4.53 0.00 0.00 2.87
577 1912 3.091190 ACCACCACCAACCACCGA 61.091 61.111 0.00 0.00 0.00 4.69
585 1920 4.653888 CAACCACCGACCACCCCC 62.654 72.222 0.00 0.00 0.00 5.40
705 2049 4.084888 CGGCAACCGGAGCGAAAC 62.085 66.667 9.46 0.00 44.15 2.78
706 2050 3.733960 GGCAACCGGAGCGAAACC 61.734 66.667 9.46 0.00 0.00 3.27
707 2051 2.975799 GCAACCGGAGCGAAACCA 60.976 61.111 9.46 0.00 0.00 3.67
708 2052 2.966309 GCAACCGGAGCGAAACCAG 61.966 63.158 9.46 0.00 0.00 4.00
709 2053 2.668550 AACCGGAGCGAAACCAGC 60.669 61.111 9.46 0.00 0.00 4.85
859 2213 4.804420 TCCGCATCCAGCCCTCCT 62.804 66.667 0.00 0.00 41.38 3.69
944 2298 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
947 2301 3.369388 GGAGGAGGAGGAGGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
948 2302 2.788589 GAGGAGGAGGAGGGGGTT 59.211 66.667 0.00 0.00 0.00 4.11
955 2312 1.613630 GAGGAGGGGGTTGAGAGCA 60.614 63.158 0.00 0.00 0.00 4.26
1113 2486 1.523758 GTACGCATCCATTCCCCATC 58.476 55.000 0.00 0.00 0.00 3.51
1114 2487 0.400213 TACGCATCCATTCCCCATCC 59.600 55.000 0.00 0.00 0.00 3.51
1115 2488 1.604593 CGCATCCATTCCCCATCCC 60.605 63.158 0.00 0.00 0.00 3.85
1116 2489 1.228988 GCATCCATTCCCCATCCCC 60.229 63.158 0.00 0.00 0.00 4.81
1117 2490 1.075482 CATCCATTCCCCATCCCCG 59.925 63.158 0.00 0.00 0.00 5.73
1118 2491 2.162906 ATCCATTCCCCATCCCCGG 61.163 63.158 0.00 0.00 0.00 5.73
1119 2492 4.603535 CCATTCCCCATCCCCGGC 62.604 72.222 0.00 0.00 0.00 6.13
1120 2493 4.954970 CATTCCCCATCCCCGGCG 62.955 72.222 0.00 0.00 0.00 6.46
1173 2546 0.317770 GTGGCCGTGACAATGTTGTG 60.318 55.000 2.65 0.00 42.43 3.33
1331 2704 3.776969 AGATGTTCAGATCCTACCAAGCA 59.223 43.478 0.00 0.00 0.00 3.91
1437 2810 0.742281 CTCCATGCAAGAGGGTGACG 60.742 60.000 8.84 0.00 0.00 4.35
1511 2884 0.538057 CTGCTCTGGAAGGTTTGCCA 60.538 55.000 0.00 0.00 37.19 4.92
1580 2953 1.906824 GAGGACCCAGACACACCGA 60.907 63.158 0.00 0.00 0.00 4.69
1601 2974 0.179000 GAGTCGGCTCCCACATGAAT 59.821 55.000 5.50 0.00 35.76 2.57
2052 3425 0.321564 TGGTGGCGATTCTGTTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
2147 3520 5.060506 TCAGTTTCAGACATAGCGGAAAAA 58.939 37.500 0.00 0.00 34.61 1.94
2198 3571 1.746220 CTGGAGCTTGCTACTACGTCT 59.254 52.381 6.39 0.00 0.00 4.18
2279 3652 0.911525 CCTTGGAGGAGGAGAAGGCA 60.912 60.000 0.00 0.00 37.67 4.75
2312 3685 2.039216 TGATTCCAGTAAGTTGGCCGAA 59.961 45.455 0.00 0.00 38.16 4.30
2391 3764 7.117812 CCATACAACATGGTACCGAGAATATTC 59.882 40.741 7.57 7.41 34.56 1.75
2394 3767 4.617959 ACATGGTACCGAGAATATTCGTG 58.382 43.478 7.57 6.43 38.88 4.35
2460 3833 2.266554 CATTGAACTCTCCAGCGTCTC 58.733 52.381 0.00 0.00 0.00 3.36
2505 3878 3.104512 TCTGAAAAGGGCTCGGAAGATA 58.895 45.455 0.00 0.00 40.84 1.98
2782 4155 1.381327 TTTCGGAGAGCGGGGAGAT 60.381 57.895 0.00 0.00 38.43 2.75
3275 4648 6.953520 TGGATAAAGGTGGTGAAGATCATTTT 59.046 34.615 0.00 0.00 0.00 1.82
3594 4967 2.760374 AGCAATATGGTAGCTCGAAGC 58.240 47.619 0.00 0.00 42.84 3.86
3595 4968 2.103094 AGCAATATGGTAGCTCGAAGCA 59.897 45.455 9.09 0.13 45.56 3.91
3601 4974 0.175760 GGTAGCTCGAAGCATGGTCA 59.824 55.000 0.00 0.00 45.56 4.02
3640 5013 7.156876 TGGGTTATCTGCTATTTGTTTCTTG 57.843 36.000 0.00 0.00 0.00 3.02
3641 5014 6.152661 TGGGTTATCTGCTATTTGTTTCTTGG 59.847 38.462 0.00 0.00 0.00 3.61
3742 5115 1.002430 GGACCTGCATCACTTGACTCA 59.998 52.381 0.00 0.00 0.00 3.41
3749 5122 5.508489 CCTGCATCACTTGACTCAAATTTGT 60.508 40.000 17.47 0.00 0.00 2.83
3754 5127 8.981647 GCATCACTTGACTCAAATTTGTTTTAT 58.018 29.630 17.47 0.77 0.00 1.40
3943 5316 5.514500 AAGCTGTTGGGAGGAAACTATTA 57.486 39.130 0.00 0.00 44.43 0.98
3997 5370 4.952071 TTTGAATTTCTCATGCCCACAA 57.048 36.364 0.00 0.00 32.78 3.33
4011 5384 2.952310 GCCCACAATATCCTTGTCTTCC 59.048 50.000 0.00 0.00 0.00 3.46
4074 5447 1.386533 ATGCAATCTTGGAGAAGCGG 58.613 50.000 0.00 0.00 33.67 5.52
4114 5487 5.475719 CAATGTCTTTCTTCAATGCATGGT 58.524 37.500 0.00 0.00 0.00 3.55
4351 5724 7.609918 TGTTGTATTGCATCTTTAGCCTCTTAA 59.390 33.333 0.00 0.00 0.00 1.85
4354 5727 7.775093 TGTATTGCATCTTTAGCCTCTTAACAT 59.225 33.333 0.00 0.00 0.00 2.71
4359 5732 8.677300 TGCATCTTTAGCCTCTTAACATTTTAG 58.323 33.333 0.00 0.00 0.00 1.85
4369 5742 9.076596 GCCTCTTAACATTTTAGCATAAGTTTG 57.923 33.333 0.00 0.00 0.00 2.93
4420 5793 7.206981 AGATAAGTGACTGTTGGTTTCATTG 57.793 36.000 0.00 0.00 0.00 2.82
4427 5800 7.448161 AGTGACTGTTGGTTTCATTGAATCATA 59.552 33.333 0.00 0.00 0.00 2.15
4461 5834 3.068732 TGTCAGAATCTTGGCTCGGATAG 59.931 47.826 0.00 0.00 0.00 2.08
4542 5915 2.103432 TGCTACCTTGTCCGTTCTTTGA 59.897 45.455 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.325870 CGGTATAGTGGGCATGTGTATG 58.674 50.000 0.00 0.00 37.36 2.39
2 3 1.069513 GCGGTATAGTGGGCATGTGTA 59.930 52.381 0.00 0.00 0.00 2.90
3 4 0.179056 GCGGTATAGTGGGCATGTGT 60.179 55.000 0.00 0.00 0.00 3.72
4 5 0.884704 GGCGGTATAGTGGGCATGTG 60.885 60.000 0.00 0.00 0.00 3.21
5 6 1.341913 TGGCGGTATAGTGGGCATGT 61.342 55.000 0.00 0.00 0.00 3.21
6 7 0.036732 ATGGCGGTATAGTGGGCATG 59.963 55.000 6.03 0.00 44.11 4.06
7 8 2.463441 ATGGCGGTATAGTGGGCAT 58.537 52.632 2.04 2.04 41.46 4.40
8 9 1.752198 GATGGCGGTATAGTGGGCA 59.248 57.895 0.00 0.00 40.66 5.36
9 10 1.003718 GGATGGCGGTATAGTGGGC 60.004 63.158 0.00 0.00 0.00 5.36
10 11 0.608640 GAGGATGGCGGTATAGTGGG 59.391 60.000 0.00 0.00 0.00 4.61
11 12 0.243907 CGAGGATGGCGGTATAGTGG 59.756 60.000 0.00 0.00 0.00 4.00
12 13 0.959553 ACGAGGATGGCGGTATAGTG 59.040 55.000 0.00 0.00 0.00 2.74
13 14 1.700955 AACGAGGATGGCGGTATAGT 58.299 50.000 0.00 0.00 0.00 2.12
14 15 3.487042 CGATAACGAGGATGGCGGTATAG 60.487 52.174 0.00 0.00 41.29 1.31
15 16 2.421073 CGATAACGAGGATGGCGGTATA 59.579 50.000 0.00 0.00 41.29 1.47
16 17 1.201647 CGATAACGAGGATGGCGGTAT 59.798 52.381 0.00 0.00 43.63 2.73
17 18 0.594602 CGATAACGAGGATGGCGGTA 59.405 55.000 0.00 0.00 42.66 4.02
18 19 1.362717 CGATAACGAGGATGGCGGT 59.637 57.895 0.00 0.00 42.66 5.68
19 20 1.372997 CCGATAACGAGGATGGCGG 60.373 63.158 0.00 0.00 42.66 6.13
20 21 0.249322 AACCGATAACGAGGATGGCG 60.249 55.000 0.00 0.00 42.66 5.69
21 22 1.949465 AAACCGATAACGAGGATGGC 58.051 50.000 0.00 0.00 42.66 4.40
22 23 3.267483 ACAAAACCGATAACGAGGATGG 58.733 45.455 0.00 0.00 42.66 3.51
23 24 4.630069 AGAACAAAACCGATAACGAGGATG 59.370 41.667 0.00 0.00 42.66 3.51
24 25 4.828829 AGAACAAAACCGATAACGAGGAT 58.171 39.130 0.00 0.00 42.66 3.24
25 26 4.261578 AGAACAAAACCGATAACGAGGA 57.738 40.909 0.00 0.00 42.66 3.71
26 27 4.689345 AGAAGAACAAAACCGATAACGAGG 59.311 41.667 0.00 0.00 42.66 4.63
27 28 5.840940 AGAAGAACAAAACCGATAACGAG 57.159 39.130 0.00 0.00 42.66 4.18
28 29 6.480981 AGAAAGAAGAACAAAACCGATAACGA 59.519 34.615 0.00 0.00 42.66 3.85
29 30 6.656003 AGAAAGAAGAACAAAACCGATAACG 58.344 36.000 0.00 0.00 39.43 3.18
30 31 7.636326 TGAGAAAGAAGAACAAAACCGATAAC 58.364 34.615 0.00 0.00 0.00 1.89
31 32 7.795482 TGAGAAAGAAGAACAAAACCGATAA 57.205 32.000 0.00 0.00 0.00 1.75
32 33 7.979444 ATGAGAAAGAAGAACAAAACCGATA 57.021 32.000 0.00 0.00 0.00 2.92
33 34 6.884280 ATGAGAAAGAAGAACAAAACCGAT 57.116 33.333 0.00 0.00 0.00 4.18
34 35 6.693315 AATGAGAAAGAAGAACAAAACCGA 57.307 33.333 0.00 0.00 0.00 4.69
35 36 8.850454 TTTAATGAGAAAGAAGAACAAAACCG 57.150 30.769 0.00 0.00 0.00 4.44
41 42 9.663904 CGAACAATTTAATGAGAAAGAAGAACA 57.336 29.630 0.00 0.00 0.00 3.18
42 43 9.878599 TCGAACAATTTAATGAGAAAGAAGAAC 57.121 29.630 0.00 0.00 0.00 3.01
44 45 8.230486 GCTCGAACAATTTAATGAGAAAGAAGA 58.770 33.333 0.00 0.00 0.00 2.87
45 46 8.017373 TGCTCGAACAATTTAATGAGAAAGAAG 58.983 33.333 0.00 0.00 0.00 2.85
46 47 7.870826 TGCTCGAACAATTTAATGAGAAAGAA 58.129 30.769 0.00 0.00 0.00 2.52
47 48 7.433708 TGCTCGAACAATTTAATGAGAAAGA 57.566 32.000 0.00 0.00 0.00 2.52
48 49 7.430502 GGATGCTCGAACAATTTAATGAGAAAG 59.569 37.037 0.00 0.00 0.00 2.62
49 50 7.121168 AGGATGCTCGAACAATTTAATGAGAAA 59.879 33.333 0.00 0.00 0.00 2.52
50 51 6.599244 AGGATGCTCGAACAATTTAATGAGAA 59.401 34.615 0.00 0.00 0.00 2.87
51 52 6.115446 AGGATGCTCGAACAATTTAATGAGA 58.885 36.000 0.00 0.00 0.00 3.27
52 53 6.369059 AGGATGCTCGAACAATTTAATGAG 57.631 37.500 0.00 0.00 0.00 2.90
53 54 6.150976 ACAAGGATGCTCGAACAATTTAATGA 59.849 34.615 0.00 0.00 0.00 2.57
54 55 6.252015 CACAAGGATGCTCGAACAATTTAATG 59.748 38.462 0.00 0.00 0.00 1.90
55 56 6.150976 TCACAAGGATGCTCGAACAATTTAAT 59.849 34.615 0.00 0.00 0.00 1.40
56 57 5.471797 TCACAAGGATGCTCGAACAATTTAA 59.528 36.000 0.00 0.00 0.00 1.52
57 58 5.000591 TCACAAGGATGCTCGAACAATTTA 58.999 37.500 0.00 0.00 0.00 1.40
58 59 3.820467 TCACAAGGATGCTCGAACAATTT 59.180 39.130 0.00 0.00 0.00 1.82
59 60 3.189287 GTCACAAGGATGCTCGAACAATT 59.811 43.478 0.00 0.00 0.00 2.32
60 61 2.744202 GTCACAAGGATGCTCGAACAAT 59.256 45.455 0.00 0.00 0.00 2.71
61 62 2.143122 GTCACAAGGATGCTCGAACAA 58.857 47.619 0.00 0.00 0.00 2.83
62 63 1.795768 GTCACAAGGATGCTCGAACA 58.204 50.000 0.00 0.00 0.00 3.18
63 64 0.716108 CGTCACAAGGATGCTCGAAC 59.284 55.000 0.00 0.00 0.00 3.95
64 65 0.317160 ACGTCACAAGGATGCTCGAA 59.683 50.000 0.00 0.00 35.86 3.71
65 66 1.132453 CTACGTCACAAGGATGCTCGA 59.868 52.381 0.00 0.00 35.86 4.04
66 67 1.135373 ACTACGTCACAAGGATGCTCG 60.135 52.381 0.00 0.00 35.86 5.03
67 68 2.656560 ACTACGTCACAAGGATGCTC 57.343 50.000 0.00 0.00 35.86 4.26
68 69 3.402628 AAACTACGTCACAAGGATGCT 57.597 42.857 0.00 0.00 35.86 3.79
69 70 4.483476 AAAAACTACGTCACAAGGATGC 57.517 40.909 0.00 0.00 35.86 3.91
87 88 6.698329 TCGACGAACTATTCTTCACTGAAAAA 59.302 34.615 0.00 0.00 0.00 1.94
88 89 6.210796 TCGACGAACTATTCTTCACTGAAAA 58.789 36.000 0.00 0.00 0.00 2.29
89 90 5.765176 TCGACGAACTATTCTTCACTGAAA 58.235 37.500 0.00 0.00 0.00 2.69
90 91 5.366829 TCGACGAACTATTCTTCACTGAA 57.633 39.130 0.00 0.00 0.00 3.02
91 92 5.366829 TTCGACGAACTATTCTTCACTGA 57.633 39.130 6.10 0.00 0.00 3.41
92 93 5.230306 GGATTCGACGAACTATTCTTCACTG 59.770 44.000 13.38 0.00 0.00 3.66
93 94 5.125739 AGGATTCGACGAACTATTCTTCACT 59.874 40.000 13.38 2.12 0.00 3.41
94 95 5.341617 AGGATTCGACGAACTATTCTTCAC 58.658 41.667 13.38 0.00 0.00 3.18
95 96 5.578005 AGGATTCGACGAACTATTCTTCA 57.422 39.130 13.38 0.00 0.00 3.02
96 97 7.361127 TGATAGGATTCGACGAACTATTCTTC 58.639 38.462 13.38 4.52 0.00 2.87
97 98 7.273320 TGATAGGATTCGACGAACTATTCTT 57.727 36.000 13.38 5.65 0.00 2.52
98 99 6.879276 TGATAGGATTCGACGAACTATTCT 57.121 37.500 13.38 4.05 0.00 2.40
99 100 6.916387 TGTTGATAGGATTCGACGAACTATTC 59.084 38.462 13.38 6.40 33.42 1.75
100 101 6.696148 GTGTTGATAGGATTCGACGAACTATT 59.304 38.462 13.38 0.00 33.42 1.73
101 102 6.183360 TGTGTTGATAGGATTCGACGAACTAT 60.183 38.462 13.38 15.24 33.42 2.12
102 103 5.124297 TGTGTTGATAGGATTCGACGAACTA 59.876 40.000 13.38 11.08 33.42 2.24
103 104 4.082408 TGTGTTGATAGGATTCGACGAACT 60.082 41.667 13.38 9.11 33.42 3.01
104 105 4.171005 TGTGTTGATAGGATTCGACGAAC 58.829 43.478 13.38 7.00 33.42 3.95
105 106 4.443913 TGTGTTGATAGGATTCGACGAA 57.556 40.909 13.48 13.48 33.42 3.85
106 107 4.157105 TCTTGTGTTGATAGGATTCGACGA 59.843 41.667 0.00 0.00 33.42 4.20
107 108 4.421058 TCTTGTGTTGATAGGATTCGACG 58.579 43.478 0.00 0.00 33.42 5.12
108 109 6.276847 AGATCTTGTGTTGATAGGATTCGAC 58.723 40.000 0.00 0.00 0.00 4.20
109 110 6.471233 AGATCTTGTGTTGATAGGATTCGA 57.529 37.500 0.00 0.00 0.00 3.71
110 111 7.429633 ACTAGATCTTGTGTTGATAGGATTCG 58.570 38.462 9.11 0.00 0.00 3.34
111 112 9.606631 AAACTAGATCTTGTGTTGATAGGATTC 57.393 33.333 10.65 0.00 0.00 2.52
112 113 9.965902 AAAACTAGATCTTGTGTTGATAGGATT 57.034 29.630 11.36 0.00 0.00 3.01
113 114 9.388506 CAAAACTAGATCTTGTGTTGATAGGAT 57.611 33.333 26.75 0.63 36.21 3.24
114 115 8.593679 TCAAAACTAGATCTTGTGTTGATAGGA 58.406 33.333 28.36 13.76 37.53 2.94
115 116 8.777865 TCAAAACTAGATCTTGTGTTGATAGG 57.222 34.615 28.36 11.60 37.53 2.57
117 118 9.996554 TCTTCAAAACTAGATCTTGTGTTGATA 57.003 29.630 30.78 22.79 40.40 2.15
118 119 8.908786 TCTTCAAAACTAGATCTTGTGTTGAT 57.091 30.769 30.78 7.90 40.40 2.57
119 120 8.908786 ATCTTCAAAACTAGATCTTGTGTTGA 57.091 30.769 28.36 28.36 39.53 3.18
120 121 8.997323 AGATCTTCAAAACTAGATCTTGTGTTG 58.003 33.333 25.57 25.57 43.23 3.33
121 122 9.213799 GAGATCTTCAAAACTAGATCTTGTGTT 57.786 33.333 10.65 8.67 45.01 3.32
122 123 7.543868 CGAGATCTTCAAAACTAGATCTTGTGT 59.456 37.037 10.65 2.10 45.01 3.72
123 124 7.757173 TCGAGATCTTCAAAACTAGATCTTGTG 59.243 37.037 20.59 12.64 45.01 3.33
124 125 7.757624 GTCGAGATCTTCAAAACTAGATCTTGT 59.242 37.037 20.59 1.18 45.01 3.16
125 126 7.044380 CGTCGAGATCTTCAAAACTAGATCTTG 60.044 40.741 17.49 17.49 45.01 3.02
126 127 6.970043 CGTCGAGATCTTCAAAACTAGATCTT 59.030 38.462 13.94 1.50 45.01 2.40
127 128 6.491394 CGTCGAGATCTTCAAAACTAGATCT 58.509 40.000 12.93 12.93 46.88 2.75
128 129 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
129 130 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
130 131 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
131 132 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
132 133 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
133 134 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
134 135 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
135 136 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
136 137 2.159435 TCATCGCGTCGAGATCTTCAAA 60.159 45.455 8.63 0.00 39.91 2.69
137 138 1.400494 TCATCGCGTCGAGATCTTCAA 59.600 47.619 8.63 0.00 39.91 2.69
138 139 1.014352 TCATCGCGTCGAGATCTTCA 58.986 50.000 8.63 0.00 39.91 3.02
139 140 2.106750 TTCATCGCGTCGAGATCTTC 57.893 50.000 8.63 0.00 39.91 2.87
140 141 2.783828 ATTCATCGCGTCGAGATCTT 57.216 45.000 8.63 0.00 39.91 2.40
141 142 2.033424 TGAATTCATCGCGTCGAGATCT 59.967 45.455 8.63 0.00 39.91 2.75
142 143 2.385315 TGAATTCATCGCGTCGAGATC 58.615 47.619 8.63 6.81 39.91 2.75
143 144 2.492019 TGAATTCATCGCGTCGAGAT 57.508 45.000 5.77 5.58 39.91 2.75
144 145 1.917955 GTTGAATTCATCGCGTCGAGA 59.082 47.619 9.40 0.00 39.91 4.04
145 146 1.330305 CGTTGAATTCATCGCGTCGAG 60.330 52.381 22.01 0.00 39.91 4.04
146 147 0.638242 CGTTGAATTCATCGCGTCGA 59.362 50.000 22.01 0.13 41.13 4.20
147 148 0.314259 CCGTTGAATTCATCGCGTCG 60.314 55.000 26.24 13.49 37.64 5.12
148 149 0.719465 ACCGTTGAATTCATCGCGTC 59.281 50.000 26.24 0.00 37.64 5.19
149 150 0.442310 CACCGTTGAATTCATCGCGT 59.558 50.000 26.24 22.19 37.64 6.01
150 151 0.247655 CCACCGTTGAATTCATCGCG 60.248 55.000 26.24 21.70 37.64 5.87
151 152 1.083489 TCCACCGTTGAATTCATCGC 58.917 50.000 26.24 12.42 37.64 4.58
152 153 3.488489 GTTTCCACCGTTGAATTCATCG 58.512 45.455 25.19 25.19 38.41 3.84
153 154 3.488489 CGTTTCCACCGTTGAATTCATC 58.512 45.455 9.40 7.73 0.00 2.92
154 155 2.227865 CCGTTTCCACCGTTGAATTCAT 59.772 45.455 9.40 0.00 0.00 2.57
155 156 1.604755 CCGTTTCCACCGTTGAATTCA 59.395 47.619 3.38 3.38 0.00 2.57
156 157 1.605232 ACCGTTTCCACCGTTGAATTC 59.395 47.619 0.00 0.00 0.00 2.17
157 158 1.682740 ACCGTTTCCACCGTTGAATT 58.317 45.000 0.00 0.00 0.00 2.17
158 159 1.605232 GAACCGTTTCCACCGTTGAAT 59.395 47.619 0.00 0.00 0.00 2.57
159 160 1.015868 GAACCGTTTCCACCGTTGAA 58.984 50.000 0.00 0.00 0.00 2.69
160 161 1.152989 CGAACCGTTTCCACCGTTGA 61.153 55.000 0.00 0.00 0.00 3.18
161 162 1.152989 TCGAACCGTTTCCACCGTTG 61.153 55.000 0.00 0.00 0.00 4.10
162 163 0.877213 CTCGAACCGTTTCCACCGTT 60.877 55.000 0.00 0.00 0.00 4.44
163 164 1.300388 CTCGAACCGTTTCCACCGT 60.300 57.895 0.00 0.00 0.00 4.83
164 165 0.389426 ATCTCGAACCGTTTCCACCG 60.389 55.000 0.00 0.00 0.00 4.94
165 166 1.804601 AATCTCGAACCGTTTCCACC 58.195 50.000 0.00 0.00 0.00 4.61
166 167 2.095919 CCAAATCTCGAACCGTTTCCAC 60.096 50.000 0.00 0.00 0.00 4.02
167 168 2.147958 CCAAATCTCGAACCGTTTCCA 58.852 47.619 0.00 0.00 0.00 3.53
168 169 2.159037 GTCCAAATCTCGAACCGTTTCC 59.841 50.000 0.00 0.00 0.00 3.13
169 170 2.159881 CGTCCAAATCTCGAACCGTTTC 60.160 50.000 0.00 0.00 0.00 2.78
170 171 1.796459 CGTCCAAATCTCGAACCGTTT 59.204 47.619 0.00 0.00 0.00 3.60
171 172 1.000060 TCGTCCAAATCTCGAACCGTT 60.000 47.619 0.00 0.00 0.00 4.44
172 173 0.599558 TCGTCCAAATCTCGAACCGT 59.400 50.000 0.00 0.00 0.00 4.83
173 174 1.705256 TTCGTCCAAATCTCGAACCG 58.295 50.000 0.00 0.00 38.38 4.44
176 177 1.000060 ACCGTTCGTCCAAATCTCGAA 60.000 47.619 0.00 0.00 40.42 3.71
177 178 0.599558 ACCGTTCGTCCAAATCTCGA 59.400 50.000 0.00 0.00 0.00 4.04
178 179 1.425412 AACCGTTCGTCCAAATCTCG 58.575 50.000 0.00 0.00 0.00 4.04
179 180 3.249080 TCAAAACCGTTCGTCCAAATCTC 59.751 43.478 0.00 0.00 0.00 2.75
180 181 3.207778 TCAAAACCGTTCGTCCAAATCT 58.792 40.909 0.00 0.00 0.00 2.40
181 182 3.612472 TCAAAACCGTTCGTCCAAATC 57.388 42.857 0.00 0.00 0.00 2.17
182 183 5.692613 TTATCAAAACCGTTCGTCCAAAT 57.307 34.783 0.00 0.00 0.00 2.32
183 184 5.496133 TTTATCAAAACCGTTCGTCCAAA 57.504 34.783 0.00 0.00 0.00 3.28
184 185 5.272397 GTTTTATCAAAACCGTTCGTCCAA 58.728 37.500 3.63 0.00 43.78 3.53
185 186 4.846509 GTTTTATCAAAACCGTTCGTCCA 58.153 39.130 3.63 0.00 43.78 4.02
211 212 9.098355 CCTGTTCTCATAGATTCGTTTATTCAA 57.902 33.333 0.00 0.00 0.00 2.69
212 213 8.474831 TCCTGTTCTCATAGATTCGTTTATTCA 58.525 33.333 0.00 0.00 0.00 2.57
213 214 8.873215 TCCTGTTCTCATAGATTCGTTTATTC 57.127 34.615 0.00 0.00 0.00 1.75
214 215 9.667107 TTTCCTGTTCTCATAGATTCGTTTATT 57.333 29.630 0.00 0.00 0.00 1.40
215 216 9.319143 CTTTCCTGTTCTCATAGATTCGTTTAT 57.681 33.333 0.00 0.00 0.00 1.40
216 217 8.528643 TCTTTCCTGTTCTCATAGATTCGTTTA 58.471 33.333 0.00 0.00 0.00 2.01
217 218 7.386851 TCTTTCCTGTTCTCATAGATTCGTTT 58.613 34.615 0.00 0.00 0.00 3.60
218 219 6.936279 TCTTTCCTGTTCTCATAGATTCGTT 58.064 36.000 0.00 0.00 0.00 3.85
219 220 6.531503 TCTTTCCTGTTCTCATAGATTCGT 57.468 37.500 0.00 0.00 0.00 3.85
220 221 7.834068 TTTCTTTCCTGTTCTCATAGATTCG 57.166 36.000 0.00 0.00 0.00 3.34
226 227 8.730680 GCACTAATTTTCTTTCCTGTTCTCATA 58.269 33.333 0.00 0.00 0.00 2.15
227 228 7.573843 CGCACTAATTTTCTTTCCTGTTCTCAT 60.574 37.037 0.00 0.00 0.00 2.90
228 229 6.293407 CGCACTAATTTTCTTTCCTGTTCTCA 60.293 38.462 0.00 0.00 0.00 3.27
229 230 6.080406 CGCACTAATTTTCTTTCCTGTTCTC 58.920 40.000 0.00 0.00 0.00 2.87
230 231 5.562890 GCGCACTAATTTTCTTTCCTGTTCT 60.563 40.000 0.30 0.00 0.00 3.01
231 232 4.617223 GCGCACTAATTTTCTTTCCTGTTC 59.383 41.667 0.30 0.00 0.00 3.18
232 233 4.278419 AGCGCACTAATTTTCTTTCCTGTT 59.722 37.500 11.47 0.00 0.00 3.16
233 234 3.821033 AGCGCACTAATTTTCTTTCCTGT 59.179 39.130 11.47 0.00 0.00 4.00
234 235 4.425577 AGCGCACTAATTTTCTTTCCTG 57.574 40.909 11.47 0.00 0.00 3.86
235 236 5.246307 AGTAGCGCACTAATTTTCTTTCCT 58.754 37.500 11.47 0.00 34.98 3.36
236 237 5.547181 AGTAGCGCACTAATTTTCTTTCC 57.453 39.130 11.47 0.00 34.98 3.13
237 238 5.795441 CCAAGTAGCGCACTAATTTTCTTTC 59.205 40.000 11.47 0.00 34.57 2.62
238 239 5.699839 CCAAGTAGCGCACTAATTTTCTTT 58.300 37.500 11.47 0.00 34.57 2.52
239 240 4.379499 GCCAAGTAGCGCACTAATTTTCTT 60.379 41.667 11.47 0.00 34.57 2.52
240 241 3.127030 GCCAAGTAGCGCACTAATTTTCT 59.873 43.478 11.47 0.00 34.57 2.52
241 242 3.426323 GCCAAGTAGCGCACTAATTTTC 58.574 45.455 11.47 0.00 34.57 2.29
242 243 3.487563 GCCAAGTAGCGCACTAATTTT 57.512 42.857 11.47 0.00 34.57 1.82
260 261 4.785453 CTCTCCCCTGGTTGCGCC 62.785 72.222 4.18 0.00 37.90 6.53
261 262 3.706373 TCTCTCCCCTGGTTGCGC 61.706 66.667 0.00 0.00 0.00 6.09
262 263 2.266055 GTCTCTCCCCTGGTTGCG 59.734 66.667 0.00 0.00 0.00 4.85
263 264 2.266055 CGTCTCTCCCCTGGTTGC 59.734 66.667 0.00 0.00 0.00 4.17
264 265 1.192146 TTCCGTCTCTCCCCTGGTTG 61.192 60.000 0.00 0.00 0.00 3.77
265 266 0.905337 CTTCCGTCTCTCCCCTGGTT 60.905 60.000 0.00 0.00 0.00 3.67
266 267 1.305381 CTTCCGTCTCTCCCCTGGT 60.305 63.158 0.00 0.00 0.00 4.00
267 268 1.305381 ACTTCCGTCTCTCCCCTGG 60.305 63.158 0.00 0.00 0.00 4.45
268 269 0.612174 TCACTTCCGTCTCTCCCCTG 60.612 60.000 0.00 0.00 0.00 4.45
269 270 0.612453 GTCACTTCCGTCTCTCCCCT 60.612 60.000 0.00 0.00 0.00 4.79
270 271 1.605971 GGTCACTTCCGTCTCTCCCC 61.606 65.000 0.00 0.00 0.00 4.81
271 272 0.612453 AGGTCACTTCCGTCTCTCCC 60.612 60.000 0.00 0.00 0.00 4.30
272 273 1.258676 AAGGTCACTTCCGTCTCTCC 58.741 55.000 0.00 0.00 28.54 3.71
273 274 2.678324 CAAAGGTCACTTCCGTCTCTC 58.322 52.381 0.00 0.00 35.41 3.20
274 275 1.270358 GCAAAGGTCACTTCCGTCTCT 60.270 52.381 0.00 0.00 35.41 3.10
275 276 1.149148 GCAAAGGTCACTTCCGTCTC 58.851 55.000 0.00 0.00 35.41 3.36
276 277 0.759346 AGCAAAGGTCACTTCCGTCT 59.241 50.000 0.00 0.00 35.41 4.18
277 278 2.338500 CTAGCAAAGGTCACTTCCGTC 58.662 52.381 0.00 0.00 35.41 4.79
278 279 1.608283 GCTAGCAAAGGTCACTTCCGT 60.608 52.381 10.63 0.00 35.41 4.69
279 280 1.079503 GCTAGCAAAGGTCACTTCCG 58.920 55.000 10.63 0.00 35.41 4.30
280 281 2.079925 CTGCTAGCAAAGGTCACTTCC 58.920 52.381 19.86 0.00 35.41 3.46
281 282 2.772287 ACTGCTAGCAAAGGTCACTTC 58.228 47.619 19.86 0.00 35.41 3.01
282 283 2.938956 ACTGCTAGCAAAGGTCACTT 57.061 45.000 19.86 0.00 38.99 3.16
283 284 2.900546 AGTACTGCTAGCAAAGGTCACT 59.099 45.455 19.86 13.27 0.00 3.41
284 285 3.254892 GAGTACTGCTAGCAAAGGTCAC 58.745 50.000 19.86 11.52 0.00 3.67
285 286 2.233922 GGAGTACTGCTAGCAAAGGTCA 59.766 50.000 19.86 0.54 0.00 4.02
286 287 2.498078 AGGAGTACTGCTAGCAAAGGTC 59.502 50.000 19.86 12.75 0.00 3.85
287 288 2.541466 AGGAGTACTGCTAGCAAAGGT 58.459 47.619 19.86 15.53 0.00 3.50
288 289 3.618690 AAGGAGTACTGCTAGCAAAGG 57.381 47.619 19.86 9.95 0.00 3.11
289 290 8.718102 TTAATTAAGGAGTACTGCTAGCAAAG 57.282 34.615 19.86 10.73 0.00 2.77
290 291 9.109393 CATTAATTAAGGAGTACTGCTAGCAAA 57.891 33.333 19.86 7.12 0.00 3.68
291 292 7.226720 GCATTAATTAAGGAGTACTGCTAGCAA 59.773 37.037 19.86 12.07 33.38 3.91
292 293 6.706270 GCATTAATTAAGGAGTACTGCTAGCA 59.294 38.462 18.05 18.22 33.38 3.49
293 294 6.931840 AGCATTAATTAAGGAGTACTGCTAGC 59.068 38.462 18.05 8.10 41.21 3.42
294 295 8.894768 AAGCATTAATTAAGGAGTACTGCTAG 57.105 34.615 18.05 2.23 41.86 3.42
295 296 9.326413 GAAAGCATTAATTAAGGAGTACTGCTA 57.674 33.333 18.05 3.07 41.86 3.49
296 297 7.011482 CGAAAGCATTAATTAAGGAGTACTGCT 59.989 37.037 11.67 11.67 43.69 4.24
297 298 7.126398 CGAAAGCATTAATTAAGGAGTACTGC 58.874 38.462 13.79 6.22 35.50 4.40
298 299 8.197988 ACGAAAGCATTAATTAAGGAGTACTG 57.802 34.615 13.79 1.65 0.00 2.74
299 300 9.880157 TTACGAAAGCATTAATTAAGGAGTACT 57.120 29.630 13.79 0.00 0.00 2.73
350 351 6.716284 CACCTCTAATCCTTCCTCTCTTTTT 58.284 40.000 0.00 0.00 0.00 1.94
351 352 5.338789 GCACCTCTAATCCTTCCTCTCTTTT 60.339 44.000 0.00 0.00 0.00 2.27
352 353 4.163268 GCACCTCTAATCCTTCCTCTCTTT 59.837 45.833 0.00 0.00 0.00 2.52
372 373 3.664537 GCTTGTAGCGTTTCTAAGTGCAC 60.665 47.826 9.40 9.40 0.00 4.57
395 396 4.451150 GCTGATGGGCCGTCGTGA 62.451 66.667 20.40 2.68 0.00 4.35
455 456 4.767255 CAGGCCCAGAGCACGACC 62.767 72.222 0.00 0.00 46.50 4.79
555 556 4.887190 GGTTGGTGGTGGTGCGGT 62.887 66.667 0.00 0.00 0.00 5.68
556 557 4.885270 TGGTTGGTGGTGGTGCGG 62.885 66.667 0.00 0.00 0.00 5.69
558 559 3.223589 GGTGGTTGGTGGTGGTGC 61.224 66.667 0.00 0.00 0.00 5.01
559 560 2.904866 CGGTGGTTGGTGGTGGTG 60.905 66.667 0.00 0.00 0.00 4.17
560 561 3.091190 TCGGTGGTTGGTGGTGGT 61.091 61.111 0.00 0.00 0.00 4.16
562 563 2.593436 GGTCGGTGGTTGGTGGTG 60.593 66.667 0.00 0.00 0.00 4.17
563 564 3.091190 TGGTCGGTGGTTGGTGGT 61.091 61.111 0.00 0.00 0.00 4.16
565 566 2.593436 GGTGGTCGGTGGTTGGTG 60.593 66.667 0.00 0.00 0.00 4.17
712 2056 2.327958 AATAGGACGAGGGGGAGGGG 62.328 65.000 0.00 0.00 0.00 4.79
713 2057 0.400093 AAATAGGACGAGGGGGAGGG 60.400 60.000 0.00 0.00 0.00 4.30
840 2194 2.512896 GAGGGCTGGATGCGGATT 59.487 61.111 0.00 0.00 44.05 3.01
944 2298 2.747855 CCCGCTTGCTCTCAACCC 60.748 66.667 0.00 0.00 0.00 4.11
1102 2459 4.603535 GCCGGGGATGGGGAATGG 62.604 72.222 2.18 0.00 0.00 3.16
1134 2507 3.730715 CACAGTTTTCAGAAATCCGCAAC 59.269 43.478 0.00 0.00 0.00 4.17
1331 2704 2.282674 TCGTACCGGTCAGCCAGT 60.283 61.111 12.40 0.00 34.09 4.00
1346 2719 0.097325 GCTCGCTAGATATCCGGTCG 59.903 60.000 0.00 0.00 0.00 4.79
1437 2810 2.269241 CTTGGGGACTCCTTCGGC 59.731 66.667 0.00 0.00 36.20 5.54
1523 2896 2.511600 GATCCCCGGCTTGTGACG 60.512 66.667 0.00 0.00 45.91 4.35
1580 2953 2.680352 ATGTGGGAGCCGACTCGT 60.680 61.111 3.36 0.00 44.48 4.18
1601 2974 0.984230 CTTCCAGTGCCCTGTCCTTA 59.016 55.000 0.00 0.00 36.95 2.69
2052 3425 0.533032 AGGTCAAGCTTAGCCTCGTC 59.467 55.000 13.45 0.00 0.00 4.20
2147 3520 3.306364 CCTTCTCCACAAGTCGATCAACT 60.306 47.826 0.00 0.00 0.00 3.16
2198 3571 6.208204 TCATTCTATCGATCTGAGCATTCTGA 59.792 38.462 0.00 0.00 36.00 3.27
2228 3601 5.105063 CGCTTGTGAAAGTCATCTATCTCA 58.895 41.667 0.00 0.00 0.00 3.27
2279 3652 3.299503 ACTGGAATCAACAACCAAAGCT 58.700 40.909 0.00 0.00 33.14 3.74
2312 3685 2.689983 CACCTCAACTTGCTTCAACCTT 59.310 45.455 0.00 0.00 0.00 3.50
2391 3764 4.461405 CAAGCTTCAGTCATTTCTTCACG 58.539 43.478 0.00 0.00 0.00 4.35
2394 3767 4.023365 ACTGCAAGCTTCAGTCATTTCTTC 60.023 41.667 19.51 0.00 40.47 2.87
2486 3859 4.199310 CAATATCTTCCGAGCCCTTTTCA 58.801 43.478 0.00 0.00 0.00 2.69
2505 3878 1.364901 GCTGTTGCTGCACCACAAT 59.635 52.632 0.00 0.00 36.03 2.71
2782 4155 6.512741 GCTTATTTTGGACGTTTCTTCAGACA 60.513 38.462 0.00 0.00 0.00 3.41
3032 4405 0.518636 CCTGTGCATCGGTCAACTTG 59.481 55.000 0.00 0.00 0.00 3.16
3275 4648 0.991146 TTGCAGCTTGGATGAGGGTA 59.009 50.000 0.00 0.00 0.00 3.69
3594 4967 5.472478 CCAACCATTCTCATCTATGACCATG 59.528 44.000 0.00 0.00 32.50 3.66
3595 4968 5.457197 CCCAACCATTCTCATCTATGACCAT 60.457 44.000 0.00 0.00 32.50 3.55
3601 4974 7.456725 CAGATAACCCAACCATTCTCATCTAT 58.543 38.462 0.00 0.00 0.00 1.98
3749 5122 9.851686 AGTGCAGGAGTATATTGAATCATAAAA 57.148 29.630 0.00 0.00 0.00 1.52
3754 5127 7.071196 AGGTTAGTGCAGGAGTATATTGAATCA 59.929 37.037 0.00 0.00 0.00 2.57
3943 5316 4.437682 TTTTGTCTGGAATCTGAGTGGT 57.562 40.909 0.00 0.00 0.00 4.16
3991 5364 4.164988 AGAGGAAGACAAGGATATTGTGGG 59.835 45.833 0.00 0.00 31.96 4.61
3997 5370 3.713764 CCACCAGAGGAAGACAAGGATAT 59.286 47.826 0.00 0.00 0.00 1.63
4011 5384 0.394192 TGCTGAACAGACCACCAGAG 59.606 55.000 5.97 0.00 0.00 3.35
4056 5429 0.677731 CCCGCTTCTCCAAGATTGCA 60.678 55.000 0.00 0.00 0.00 4.08
4114 5487 9.391006 GTCTGGTAATTTTCCACTATATTGACA 57.609 33.333 0.00 0.00 0.00 3.58
4193 5566 6.771076 TGTTAACAGATCATCGTATGCAAAC 58.229 36.000 3.59 0.00 0.00 2.93
4283 5656 5.417580 GCAACACCACCTTCCATATAAAAGA 59.582 40.000 0.00 0.00 0.00 2.52
4289 5662 2.041620 ACAGCAACACCACCTTCCATAT 59.958 45.455 0.00 0.00 0.00 1.78
4323 5696 6.434028 AGAGGCTAAAGATGCAATACAACAAA 59.566 34.615 0.00 0.00 0.00 2.83
4329 5702 7.553881 TGTTAAGAGGCTAAAGATGCAATAC 57.446 36.000 0.00 0.00 0.00 1.89
4351 5724 9.630098 CAATGACTCAAACTTATGCTAAAATGT 57.370 29.630 0.00 0.00 0.00 2.71
4354 5727 7.885297 AGCAATGACTCAAACTTATGCTAAAA 58.115 30.769 0.00 0.00 40.78 1.52
4359 5732 6.428385 AGTAGCAATGACTCAAACTTATGC 57.572 37.500 0.00 0.00 0.00 3.14
4420 5793 5.614308 TGACACCATCCTGTCATATGATTC 58.386 41.667 9.02 0.00 44.54 2.52
4461 5834 8.893219 TGATATGAAACATACCTGATCAAGTC 57.107 34.615 0.00 0.00 0.00 3.01
4565 5938 4.020307 ACAGCCCATTTTCCATTTTCGAAT 60.020 37.500 0.00 0.00 0.00 3.34
4568 5941 2.995258 CACAGCCCATTTTCCATTTTCG 59.005 45.455 0.00 0.00 0.00 3.46
4574 5951 0.482446 ACCTCACAGCCCATTTTCCA 59.518 50.000 0.00 0.00 0.00 3.53
4575 5952 0.890683 CACCTCACAGCCCATTTTCC 59.109 55.000 0.00 0.00 0.00 3.13
4580 5957 3.259314 TGCCACCTCACAGCCCAT 61.259 61.111 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.