Multiple sequence alignment - TraesCS1A01G290700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G290700 chr1A 100.000 6082 0 0 1 6082 487087934 487094015 0.000000e+00 11232.0
1 TraesCS1A01G290700 chr1A 84.991 533 71 5 4052 4578 403390326 403390855 3.230000e-147 532.0
2 TraesCS1A01G290700 chr1A 96.907 291 9 0 120 410 432197042 432196752 7.090000e-134 488.0
3 TraesCS1A01G290700 chr1A 88.679 53 6 0 4171 4223 533449243 533449191 1.420000e-06 65.8
4 TraesCS1A01G290700 chr1B 95.644 4431 125 29 1665 6069 520782059 520786447 0.000000e+00 7051.0
5 TraesCS1A01G290700 chr1B 90.944 1049 58 16 577 1612 520781017 520782041 0.000000e+00 1376.0
6 TraesCS1A01G290700 chr1B 90.909 66 6 0 405 470 573580375 573580440 8.400000e-14 89.8
7 TraesCS1A01G290700 chr1B 88.679 53 6 0 4171 4223 591111308 591111256 1.420000e-06 65.8
8 TraesCS1A01G290700 chr1D 95.638 4425 132 27 1665 6082 387424166 387428536 0.000000e+00 7046.0
9 TraesCS1A01G290700 chr1D 91.996 1062 39 22 577 1612 387423107 387424148 0.000000e+00 1448.0
10 TraesCS1A01G290700 chr1D 88.679 53 6 0 4171 4223 436190991 436190939 1.420000e-06 65.8
11 TraesCS1A01G290700 chr7D 82.599 885 115 14 4052 4931 530712659 530713509 0.000000e+00 745.0
12 TraesCS1A01G290700 chr7D 88.732 71 8 0 409 479 461201568 461201498 3.020000e-13 87.9
13 TraesCS1A01G290700 chr7B 82.574 878 115 18 4063 4935 570062791 570063635 0.000000e+00 739.0
14 TraesCS1A01G290700 chr7B 86.375 389 47 3 4052 4435 570173783 570174170 2.620000e-113 420.0
15 TraesCS1A01G290700 chr7B 89.968 309 27 4 116 422 405652878 405652572 4.420000e-106 396.0
16 TraesCS1A01G290700 chr6A 95.652 299 13 0 119 417 606850864 606851162 1.190000e-131 481.0
17 TraesCS1A01G290700 chr6A 97.143 70 2 0 2 71 407127730 407127799 1.070000e-22 119.0
18 TraesCS1A01G290700 chr6A 92.308 65 5 0 406 470 77720625 77720689 6.490000e-15 93.5
19 TraesCS1A01G290700 chr5A 93.688 301 19 0 121 421 412604264 412603964 9.300000e-123 451.0
20 TraesCS1A01G290700 chr5A 92.593 297 20 1 121 415 1389307 1389011 5.630000e-115 425.0
21 TraesCS1A01G290700 chr5A 83.636 385 50 10 4556 4933 670228678 670229056 3.490000e-92 350.0
22 TraesCS1A01G290700 chr5A 86.047 129 18 0 4405 4533 640561166 640561038 8.220000e-29 139.0
23 TraesCS1A01G290700 chr5A 97.183 71 2 0 2 72 380838131 380838061 2.980000e-23 121.0
24 TraesCS1A01G290700 chr5A 93.846 65 4 0 4210 4274 188273108 188273172 1.400000e-16 99.0
25 TraesCS1A01G290700 chr2A 93.515 293 18 1 125 417 371047646 371047937 9.360000e-118 435.0
26 TraesCS1A01G290700 chr2A 91.468 293 24 1 121 412 424635135 424635427 9.500000e-108 401.0
27 TraesCS1A01G290700 chr4B 83.265 490 56 12 4397 4870 624402876 624402397 1.570000e-115 427.0
28 TraesCS1A01G290700 chr4B 90.000 70 6 1 409 477 632696978 632696909 8.400000e-14 89.8
29 TraesCS1A01G290700 chr5D 90.878 296 27 0 120 415 381723801 381723506 1.230000e-106 398.0
30 TraesCS1A01G290700 chr4A 91.126 293 25 1 119 410 117703403 117703111 4.420000e-106 396.0
31 TraesCS1A01G290700 chr4A 95.946 74 3 0 2 75 610424850 610424777 2.980000e-23 121.0
32 TraesCS1A01G290700 chr4A 95.890 73 3 0 2 74 444380594 444380666 1.070000e-22 119.0
33 TraesCS1A01G290700 chr4D 80.256 547 63 17 4397 4933 488358241 488357730 2.680000e-98 370.0
34 TraesCS1A01G290700 chr4D 94.667 75 4 0 2 76 295215686 295215612 3.850000e-22 117.0
35 TraesCS1A01G290700 chr3A 83.810 210 22 7 1200 1409 374728692 374728889 8.050000e-44 189.0
36 TraesCS1A01G290700 chr3A 92.500 80 5 1 1 80 117783563 117783485 4.980000e-21 113.0
37 TraesCS1A01G290700 chr7A 79.245 265 31 15 4860 5103 610941662 610941923 4.880000e-36 163.0
38 TraesCS1A01G290700 chr5B 97.260 73 2 0 2 74 629622696 629622624 2.300000e-24 124.0
39 TraesCS1A01G290700 chr5B 90.909 66 6 0 406 471 633675843 633675908 8.400000e-14 89.8
40 TraesCS1A01G290700 chr3B 97.222 72 2 0 1 72 749278094 749278023 8.280000e-24 122.0
41 TraesCS1A01G290700 chr3B 91.549 71 5 1 409 478 50261593 50261523 5.020000e-16 97.1
42 TraesCS1A01G290700 chr3B 86.585 82 8 2 406 484 692963138 692963219 3.020000e-13 87.9
43 TraesCS1A01G290700 chr3B 88.571 70 8 0 409 478 6090043 6089974 1.090000e-12 86.1
44 TraesCS1A01G290700 chr2B 97.183 71 2 0 2 72 719487690 719487760 2.980000e-23 121.0
45 TraesCS1A01G290700 chr2B 87.368 95 8 4 4614 4705 289174835 289174742 8.340000e-19 106.0
46 TraesCS1A01G290700 chr3D 88.732 71 7 1 409 478 29607088 29607018 1.090000e-12 86.1
47 TraesCS1A01G290700 chr6B 94.444 36 2 0 5047 5082 39197852 39197887 8.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G290700 chr1A 487087934 487094015 6081 False 11232.0 11232 100.000 1 6082 1 chr1A.!!$F2 6081
1 TraesCS1A01G290700 chr1A 403390326 403390855 529 False 532.0 532 84.991 4052 4578 1 chr1A.!!$F1 526
2 TraesCS1A01G290700 chr1B 520781017 520786447 5430 False 4213.5 7051 93.294 577 6069 2 chr1B.!!$F2 5492
3 TraesCS1A01G290700 chr1D 387423107 387428536 5429 False 4247.0 7046 93.817 577 6082 2 chr1D.!!$F1 5505
4 TraesCS1A01G290700 chr7D 530712659 530713509 850 False 745.0 745 82.599 4052 4931 1 chr7D.!!$F1 879
5 TraesCS1A01G290700 chr7B 570062791 570063635 844 False 739.0 739 82.574 4063 4935 1 chr7B.!!$F1 872
6 TraesCS1A01G290700 chr4D 488357730 488358241 511 True 370.0 370 80.256 4397 4933 1 chr4D.!!$R2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.037790 TTATGTTTGGGGCGCTTTGC 60.038 50.0 7.64 0.00 45.38 3.68 F
620 621 0.383860 CGTCCGAACGCTTTTTCCAC 60.384 55.0 0.00 0.00 42.82 4.02 F
1384 1421 1.172812 GCCGTCCTTTCTTGTTGCCT 61.173 55.0 0.00 0.00 0.00 4.75 F
1637 1678 0.108138 ATCTGTCTACGTTGGCCAGC 60.108 55.0 10.00 10.00 0.00 4.85 F
1640 1681 0.179043 TGTCTACGTTGGCCAGCAAA 60.179 50.0 20.42 5.55 0.00 3.68 F
1646 1687 0.243365 CGTTGGCCAGCAAAGCATTA 59.757 50.0 20.42 0.00 0.00 1.90 F
1649 1690 0.607620 TGGCCAGCAAAGCATTAACC 59.392 50.0 0.00 0.00 0.00 2.85 F
1650 1691 0.607620 GGCCAGCAAAGCATTAACCA 59.392 50.0 0.00 0.00 0.00 3.67 F
4477 4537 0.457853 GCGATGTACTGCTCAACCGA 60.458 55.0 0.00 0.00 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1659 0.108138 GCTGGCCAACGTAGACAGAT 60.108 55.000 22.18 0.00 0.00 2.90 R
1621 1662 0.179043 TTTGCTGGCCAACGTAGACA 60.179 50.000 7.01 0.00 31.97 3.41 R
2548 2593 0.389817 TGGCGATGCAGACACAGTAC 60.390 55.000 0.00 0.00 0.00 2.73 R
2766 2812 0.447406 GCGTACTGTGCATTGCATGA 59.553 50.000 15.49 3.93 41.91 3.07 R
3599 3645 2.432444 TGGTACCATTCAAAAGGCGAG 58.568 47.619 11.60 0.00 0.00 5.03 R
4157 4206 3.106827 ACCAATTCCAAGGCCAATAAGG 58.893 45.455 5.01 4.57 41.84 2.69 R
4302 4351 2.275134 TTGCTGCTCCTGTTGAATCA 57.725 45.000 0.00 0.00 0.00 2.57 R
4691 4753 1.595058 GGAGGGAGAAGGGAGGGAGA 61.595 65.000 0.00 0.00 0.00 3.71 R
5820 5895 0.109272 GTCAGATCACGGTCGCTTCA 60.109 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.200364 ACAAATGAAAAACAATGACCTTTCAG 57.800 30.769 12.01 5.00 40.17 3.02
26 27 7.823799 ACAAATGAAAAACAATGACCTTTCAGT 59.176 29.630 12.01 8.45 40.17 3.41
37 38 7.621428 AATGACCTTTCAGTGATCAATAGTG 57.379 36.000 0.00 0.00 34.35 2.74
38 39 6.358974 TGACCTTTCAGTGATCAATAGTGA 57.641 37.500 0.00 0.00 38.41 3.41
39 40 7.571919 ATGACCTTTCAGTGATCAATAGTGAT 58.428 34.615 5.14 5.14 40.34 3.06
40 41 8.078060 TGACCTTTCAGTGATCAATAGTGATA 57.922 34.615 5.51 0.00 44.83 2.15
41 42 8.200120 TGACCTTTCAGTGATCAATAGTGATAG 58.800 37.037 5.51 3.48 44.83 2.08
42 43 8.083828 ACCTTTCAGTGATCAATAGTGATAGT 57.916 34.615 5.51 0.00 44.83 2.12
43 44 8.200792 ACCTTTCAGTGATCAATAGTGATAGTC 58.799 37.037 5.51 0.00 44.83 2.59
44 45 7.380870 CCTTTCAGTGATCAATAGTGATAGTCG 59.619 40.741 5.51 0.00 44.83 4.18
45 46 5.763088 TCAGTGATCAATAGTGATAGTCGC 58.237 41.667 5.51 1.76 44.83 5.19
46 47 5.299279 TCAGTGATCAATAGTGATAGTCGCA 59.701 40.000 5.51 0.00 44.83 5.10
47 48 5.979517 CAGTGATCAATAGTGATAGTCGCAA 59.020 40.000 5.51 0.00 44.83 4.85
48 49 6.143598 CAGTGATCAATAGTGATAGTCGCAAG 59.856 42.308 5.51 0.00 44.83 4.01
49 50 5.980116 GTGATCAATAGTGATAGTCGCAAGT 59.020 40.000 5.51 0.00 44.83 3.16
50 51 6.477033 GTGATCAATAGTGATAGTCGCAAGTT 59.523 38.462 5.51 0.00 44.83 2.66
51 52 6.476706 TGATCAATAGTGATAGTCGCAAGTTG 59.523 38.462 5.51 0.00 44.83 3.16
52 53 5.961272 TCAATAGTGATAGTCGCAAGTTGA 58.039 37.500 7.16 0.00 39.48 3.18
53 54 5.805486 TCAATAGTGATAGTCGCAAGTTGAC 59.195 40.000 7.16 0.00 39.48 3.18
54 55 3.660501 AGTGATAGTCGCAAGTTGACA 57.339 42.857 7.16 0.00 38.83 3.58
55 56 4.193826 AGTGATAGTCGCAAGTTGACAT 57.806 40.909 7.16 0.00 38.83 3.06
56 57 5.324784 AGTGATAGTCGCAAGTTGACATA 57.675 39.130 7.16 0.00 38.83 2.29
57 58 5.907207 AGTGATAGTCGCAAGTTGACATAT 58.093 37.500 7.16 0.00 38.83 1.78
58 59 6.341316 AGTGATAGTCGCAAGTTGACATATT 58.659 36.000 7.16 0.00 38.83 1.28
59 60 6.818644 AGTGATAGTCGCAAGTTGACATATTT 59.181 34.615 7.16 0.00 38.83 1.40
60 61 7.010552 AGTGATAGTCGCAAGTTGACATATTTC 59.989 37.037 7.16 0.00 38.83 2.17
61 62 7.010552 GTGATAGTCGCAAGTTGACATATTTCT 59.989 37.037 7.16 0.00 38.83 2.52
62 63 7.549134 TGATAGTCGCAAGTTGACATATTTCTT 59.451 33.333 7.16 0.00 38.83 2.52
63 64 5.931532 AGTCGCAAGTTGACATATTTCTTG 58.068 37.500 7.16 0.00 38.83 3.02
64 65 5.470098 AGTCGCAAGTTGACATATTTCTTGT 59.530 36.000 7.16 0.00 38.83 3.16
65 66 6.649141 AGTCGCAAGTTGACATATTTCTTGTA 59.351 34.615 7.16 0.00 38.83 2.41
66 67 6.955963 GTCGCAAGTTGACATATTTCTTGTAG 59.044 38.462 7.16 0.00 38.09 2.74
67 68 6.649141 TCGCAAGTTGACATATTTCTTGTAGT 59.351 34.615 7.16 0.00 38.09 2.73
68 69 6.738200 CGCAAGTTGACATATTTCTTGTAGTG 59.262 38.462 7.16 0.00 38.09 2.74
69 70 6.524586 GCAAGTTGACATATTTCTTGTAGTGC 59.475 38.462 7.16 0.00 38.09 4.40
70 71 7.573843 GCAAGTTGACATATTTCTTGTAGTGCT 60.574 37.037 7.16 0.00 38.09 4.40
71 72 7.602517 AGTTGACATATTTCTTGTAGTGCTC 57.397 36.000 0.00 0.00 0.00 4.26
72 73 6.311445 AGTTGACATATTTCTTGTAGTGCTCG 59.689 38.462 0.00 0.00 0.00 5.03
73 74 5.720202 TGACATATTTCTTGTAGTGCTCGT 58.280 37.500 0.00 0.00 0.00 4.18
74 75 6.163476 TGACATATTTCTTGTAGTGCTCGTT 58.837 36.000 0.00 0.00 0.00 3.85
75 76 6.310467 TGACATATTTCTTGTAGTGCTCGTTC 59.690 38.462 0.00 0.00 0.00 3.95
76 77 6.398918 ACATATTTCTTGTAGTGCTCGTTCT 58.601 36.000 0.00 0.00 0.00 3.01
77 78 6.311445 ACATATTTCTTGTAGTGCTCGTTCTG 59.689 38.462 0.00 0.00 0.00 3.02
78 79 2.724977 TCTTGTAGTGCTCGTTCTGG 57.275 50.000 0.00 0.00 0.00 3.86
79 80 1.071605 CTTGTAGTGCTCGTTCTGGC 58.928 55.000 0.00 0.00 0.00 4.85
80 81 0.666274 TTGTAGTGCTCGTTCTGGCG 60.666 55.000 0.00 0.00 0.00 5.69
81 82 1.805945 GTAGTGCTCGTTCTGGCGG 60.806 63.158 0.00 0.00 0.00 6.13
82 83 3.642778 TAGTGCTCGTTCTGGCGGC 62.643 63.158 0.00 0.00 0.00 6.53
86 87 4.514577 CTCGTTCTGGCGGCGGAT 62.515 66.667 22.41 0.00 0.00 4.18
87 88 3.133767 CTCGTTCTGGCGGCGGATA 62.134 63.158 22.41 9.78 0.00 2.59
88 89 2.029073 CGTTCTGGCGGCGGATAT 59.971 61.111 22.41 0.00 0.00 1.63
89 90 2.310233 CGTTCTGGCGGCGGATATG 61.310 63.158 22.41 13.40 0.00 1.78
90 91 1.961277 GTTCTGGCGGCGGATATGG 60.961 63.158 22.41 0.00 0.00 2.74
91 92 2.439960 TTCTGGCGGCGGATATGGT 61.440 57.895 22.41 0.00 0.00 3.55
92 93 2.357517 CTGGCGGCGGATATGGTC 60.358 66.667 13.52 0.00 0.00 4.02
93 94 4.293648 TGGCGGCGGATATGGTCG 62.294 66.667 9.78 0.00 35.21 4.79
94 95 4.295119 GGCGGCGGATATGGTCGT 62.295 66.667 9.78 0.00 34.45 4.34
95 96 2.279918 GCGGCGGATATGGTCGTT 60.280 61.111 9.78 0.00 34.45 3.85
96 97 2.308039 GCGGCGGATATGGTCGTTC 61.308 63.158 9.78 0.00 34.45 3.95
97 98 2.014554 CGGCGGATATGGTCGTTCG 61.015 63.158 0.00 0.00 0.00 3.95
98 99 1.663702 GGCGGATATGGTCGTTCGG 60.664 63.158 0.00 0.00 0.00 4.30
99 100 1.066918 GCGGATATGGTCGTTCGGT 59.933 57.895 0.00 0.00 0.00 4.69
100 101 0.529119 GCGGATATGGTCGTTCGGTT 60.529 55.000 0.00 0.00 0.00 4.44
101 102 1.205657 CGGATATGGTCGTTCGGTTG 58.794 55.000 0.00 0.00 0.00 3.77
102 103 0.935196 GGATATGGTCGTTCGGTTGC 59.065 55.000 0.00 0.00 0.00 4.17
103 104 0.935196 GATATGGTCGTTCGGTTGCC 59.065 55.000 0.00 0.00 0.00 4.52
104 105 0.463116 ATATGGTCGTTCGGTTGCCC 60.463 55.000 0.00 0.00 0.00 5.36
105 106 1.828461 TATGGTCGTTCGGTTGCCCA 61.828 55.000 0.00 0.00 0.00 5.36
106 107 2.359478 GGTCGTTCGGTTGCCCAT 60.359 61.111 0.00 0.00 0.00 4.00
107 108 2.686816 GGTCGTTCGGTTGCCCATG 61.687 63.158 0.00 0.00 0.00 3.66
108 109 2.359354 TCGTTCGGTTGCCCATGG 60.359 61.111 4.14 4.14 0.00 3.66
109 110 2.359354 CGTTCGGTTGCCCATGGA 60.359 61.111 15.22 0.00 0.00 3.41
110 111 1.969064 CGTTCGGTTGCCCATGGAA 60.969 57.895 15.22 0.00 0.00 3.53
111 112 1.584495 GTTCGGTTGCCCATGGAAC 59.416 57.895 15.22 10.69 0.00 3.62
112 113 0.893727 GTTCGGTTGCCCATGGAACT 60.894 55.000 15.22 0.00 35.36 3.01
113 114 0.608035 TTCGGTTGCCCATGGAACTC 60.608 55.000 15.22 4.27 0.00 3.01
114 115 2.398554 CGGTTGCCCATGGAACTCG 61.399 63.158 15.22 12.09 0.00 4.18
115 116 1.002624 GGTTGCCCATGGAACTCGA 60.003 57.895 15.22 0.00 0.00 4.04
116 117 0.394352 GGTTGCCCATGGAACTCGAT 60.394 55.000 15.22 0.00 0.00 3.59
117 118 0.734889 GTTGCCCATGGAACTCGATG 59.265 55.000 15.22 0.00 32.75 3.84
118 119 0.327924 TTGCCCATGGAACTCGATGT 59.672 50.000 15.22 0.00 31.27 3.06
119 120 1.199615 TGCCCATGGAACTCGATGTA 58.800 50.000 15.22 0.00 31.27 2.29
120 121 1.557371 TGCCCATGGAACTCGATGTAA 59.443 47.619 15.22 0.00 31.27 2.41
121 122 2.172505 TGCCCATGGAACTCGATGTAAT 59.827 45.455 15.22 0.00 31.27 1.89
122 123 2.808543 GCCCATGGAACTCGATGTAATC 59.191 50.000 15.22 0.00 40.89 1.75
123 124 3.495100 GCCCATGGAACTCGATGTAATCT 60.495 47.826 15.22 0.00 42.58 2.40
124 125 4.262463 GCCCATGGAACTCGATGTAATCTA 60.262 45.833 15.22 0.00 42.58 1.98
125 126 5.569630 GCCCATGGAACTCGATGTAATCTAT 60.570 44.000 15.22 0.00 42.58 1.98
126 127 6.351033 GCCCATGGAACTCGATGTAATCTATA 60.351 42.308 15.22 0.00 42.58 1.31
127 128 7.611770 CCCATGGAACTCGATGTAATCTATAA 58.388 38.462 15.22 0.00 42.58 0.98
128 129 8.260818 CCCATGGAACTCGATGTAATCTATAAT 58.739 37.037 15.22 0.00 42.58 1.28
154 155 8.102484 ACATAAATAGTTGATCCCCACTAAGT 57.898 34.615 0.00 0.00 0.00 2.24
155 156 8.211629 ACATAAATAGTTGATCCCCACTAAGTC 58.788 37.037 0.00 0.00 0.00 3.01
156 157 6.893020 AAATAGTTGATCCCCACTAAGTCT 57.107 37.500 0.00 0.00 0.00 3.24
157 158 7.989947 AAATAGTTGATCCCCACTAAGTCTA 57.010 36.000 0.00 0.00 0.00 2.59
158 159 7.989947 AATAGTTGATCCCCACTAAGTCTAA 57.010 36.000 0.00 0.00 0.00 2.10
159 160 8.568617 AATAGTTGATCCCCACTAAGTCTAAT 57.431 34.615 0.00 0.00 0.00 1.73
160 161 6.893020 AGTTGATCCCCACTAAGTCTAATT 57.107 37.500 0.00 0.00 0.00 1.40
161 162 6.890293 AGTTGATCCCCACTAAGTCTAATTC 58.110 40.000 0.00 0.00 0.00 2.17
162 163 6.674419 AGTTGATCCCCACTAAGTCTAATTCT 59.326 38.462 0.00 0.00 0.00 2.40
163 164 6.732896 TGATCCCCACTAAGTCTAATTCTC 57.267 41.667 0.00 0.00 0.00 2.87
164 165 6.444704 TGATCCCCACTAAGTCTAATTCTCT 58.555 40.000 0.00 0.00 0.00 3.10
165 166 6.551601 TGATCCCCACTAAGTCTAATTCTCTC 59.448 42.308 0.00 0.00 0.00 3.20
166 167 5.838955 TCCCCACTAAGTCTAATTCTCTCA 58.161 41.667 0.00 0.00 0.00 3.27
167 168 6.261435 TCCCCACTAAGTCTAATTCTCTCAA 58.739 40.000 0.00 0.00 0.00 3.02
168 169 6.154706 TCCCCACTAAGTCTAATTCTCTCAAC 59.845 42.308 0.00 0.00 0.00 3.18
169 170 6.070767 CCCCACTAAGTCTAATTCTCTCAACA 60.071 42.308 0.00 0.00 0.00 3.33
170 171 7.365117 CCCCACTAAGTCTAATTCTCTCAACAT 60.365 40.741 0.00 0.00 0.00 2.71
171 172 7.493971 CCCACTAAGTCTAATTCTCTCAACATG 59.506 40.741 0.00 0.00 0.00 3.21
172 173 7.010923 CCACTAAGTCTAATTCTCTCAACATGC 59.989 40.741 0.00 0.00 0.00 4.06
173 174 7.547019 CACTAAGTCTAATTCTCTCAACATGCA 59.453 37.037 0.00 0.00 0.00 3.96
174 175 6.981762 AAGTCTAATTCTCTCAACATGCAG 57.018 37.500 0.00 0.00 0.00 4.41
175 176 4.874966 AGTCTAATTCTCTCAACATGCAGC 59.125 41.667 0.00 0.00 0.00 5.25
176 177 4.034975 GTCTAATTCTCTCAACATGCAGCC 59.965 45.833 0.00 0.00 0.00 4.85
177 178 1.760192 ATTCTCTCAACATGCAGCCC 58.240 50.000 0.00 0.00 0.00 5.19
178 179 0.694771 TTCTCTCAACATGCAGCCCT 59.305 50.000 0.00 0.00 0.00 5.19
179 180 0.251354 TCTCTCAACATGCAGCCCTC 59.749 55.000 0.00 0.00 0.00 4.30
180 181 0.747283 CTCTCAACATGCAGCCCTCC 60.747 60.000 0.00 0.00 0.00 4.30
181 182 1.001764 CTCAACATGCAGCCCTCCA 60.002 57.895 0.00 0.00 0.00 3.86
182 183 1.303561 TCAACATGCAGCCCTCCAC 60.304 57.895 0.00 0.00 0.00 4.02
183 184 1.604308 CAACATGCAGCCCTCCACA 60.604 57.895 0.00 0.00 0.00 4.17
184 185 0.968901 CAACATGCAGCCCTCCACAT 60.969 55.000 0.00 0.00 0.00 3.21
185 186 0.682209 AACATGCAGCCCTCCACATC 60.682 55.000 0.00 0.00 0.00 3.06
186 187 1.077285 CATGCAGCCCTCCACATCA 60.077 57.895 0.00 0.00 0.00 3.07
187 188 0.467474 CATGCAGCCCTCCACATCAT 60.467 55.000 0.00 0.00 0.00 2.45
188 189 0.178998 ATGCAGCCCTCCACATCATC 60.179 55.000 0.00 0.00 0.00 2.92
189 190 1.225426 GCAGCCCTCCACATCATCA 59.775 57.895 0.00 0.00 0.00 3.07
190 191 0.394762 GCAGCCCTCCACATCATCAA 60.395 55.000 0.00 0.00 0.00 2.57
191 192 1.956636 GCAGCCCTCCACATCATCAAA 60.957 52.381 0.00 0.00 0.00 2.69
192 193 2.662866 CAGCCCTCCACATCATCAAAT 58.337 47.619 0.00 0.00 0.00 2.32
193 194 3.824133 CAGCCCTCCACATCATCAAATA 58.176 45.455 0.00 0.00 0.00 1.40
194 195 4.404640 CAGCCCTCCACATCATCAAATAT 58.595 43.478 0.00 0.00 0.00 1.28
195 196 4.217767 CAGCCCTCCACATCATCAAATATG 59.782 45.833 0.00 0.00 0.00 1.78
196 197 4.105217 AGCCCTCCACATCATCAAATATGA 59.895 41.667 0.00 0.00 40.57 2.15
197 198 4.217118 GCCCTCCACATCATCAAATATGAC 59.783 45.833 0.00 0.00 38.69 3.06
198 199 5.379187 CCCTCCACATCATCAAATATGACA 58.621 41.667 0.00 0.00 38.69 3.58
199 200 5.240183 CCCTCCACATCATCAAATATGACAC 59.760 44.000 0.00 0.00 38.69 3.67
200 201 5.049886 CCTCCACATCATCAAATATGACACG 60.050 44.000 0.00 0.00 38.69 4.49
201 202 5.427378 TCCACATCATCAAATATGACACGT 58.573 37.500 0.00 0.00 38.69 4.49
202 203 5.523552 TCCACATCATCAAATATGACACGTC 59.476 40.000 0.00 0.00 38.69 4.34
203 204 5.294060 CCACATCATCAAATATGACACGTCA 59.706 40.000 1.71 1.71 44.59 4.35
205 206 7.067728 CACATCATCAAATATGACACGTCATC 58.932 38.462 15.68 0.00 46.57 2.92
206 207 6.762661 ACATCATCAAATATGACACGTCATCA 59.237 34.615 15.68 1.66 46.57 3.07
207 208 7.443272 ACATCATCAAATATGACACGTCATCAT 59.557 33.333 15.68 14.55 46.57 2.45
208 209 7.412137 TCATCAAATATGACACGTCATCATC 57.588 36.000 15.68 0.00 46.57 2.92
209 210 6.424812 TCATCAAATATGACACGTCATCATCC 59.575 38.462 15.68 0.00 46.57 3.51
210 211 5.669477 TCAAATATGACACGTCATCATCCA 58.331 37.500 15.68 0.00 46.57 3.41
211 212 6.290605 TCAAATATGACACGTCATCATCCAT 58.709 36.000 15.68 1.68 46.57 3.41
212 213 6.424812 TCAAATATGACACGTCATCATCCATC 59.575 38.462 15.68 0.00 46.57 3.51
213 214 3.825143 ATGACACGTCATCATCCATCA 57.175 42.857 6.85 0.00 46.57 3.07
214 215 3.169355 TGACACGTCATCATCCATCAG 57.831 47.619 0.00 0.00 34.14 2.90
215 216 2.760092 TGACACGTCATCATCCATCAGA 59.240 45.455 0.00 0.00 34.14 3.27
216 217 3.195396 TGACACGTCATCATCCATCAGAA 59.805 43.478 0.00 0.00 34.14 3.02
217 218 3.525537 ACACGTCATCATCCATCAGAAC 58.474 45.455 0.00 0.00 0.00 3.01
218 219 3.196469 ACACGTCATCATCCATCAGAACT 59.804 43.478 0.00 0.00 0.00 3.01
219 220 4.402474 ACACGTCATCATCCATCAGAACTA 59.598 41.667 0.00 0.00 0.00 2.24
220 221 5.069648 ACACGTCATCATCCATCAGAACTAT 59.930 40.000 0.00 0.00 0.00 2.12
221 222 5.987953 CACGTCATCATCCATCAGAACTATT 59.012 40.000 0.00 0.00 0.00 1.73
222 223 6.481313 CACGTCATCATCCATCAGAACTATTT 59.519 38.462 0.00 0.00 0.00 1.40
223 224 7.011763 CACGTCATCATCCATCAGAACTATTTT 59.988 37.037 0.00 0.00 0.00 1.82
224 225 7.011763 ACGTCATCATCCATCAGAACTATTTTG 59.988 37.037 0.00 0.00 0.00 2.44
225 226 7.011763 CGTCATCATCCATCAGAACTATTTTGT 59.988 37.037 0.00 0.00 0.00 2.83
226 227 9.330063 GTCATCATCCATCAGAACTATTTTGTA 57.670 33.333 0.00 0.00 0.00 2.41
227 228 9.551734 TCATCATCCATCAGAACTATTTTGTAG 57.448 33.333 0.00 0.00 0.00 2.74
228 229 8.781196 CATCATCCATCAGAACTATTTTGTAGG 58.219 37.037 0.00 0.00 0.00 3.18
229 230 8.089625 TCATCCATCAGAACTATTTTGTAGGA 57.910 34.615 0.00 0.00 0.00 2.94
230 231 7.987458 TCATCCATCAGAACTATTTTGTAGGAC 59.013 37.037 0.00 0.00 0.00 3.85
231 232 7.252612 TCCATCAGAACTATTTTGTAGGACA 57.747 36.000 0.00 0.00 0.00 4.02
232 233 7.861629 TCCATCAGAACTATTTTGTAGGACAT 58.138 34.615 0.00 0.00 0.00 3.06
233 234 7.770433 TCCATCAGAACTATTTTGTAGGACATG 59.230 37.037 0.00 0.00 0.00 3.21
234 235 6.985188 TCAGAACTATTTTGTAGGACATGC 57.015 37.500 0.00 0.00 0.00 4.06
235 236 6.472016 TCAGAACTATTTTGTAGGACATGCA 58.528 36.000 0.00 0.00 0.00 3.96
236 237 7.112122 TCAGAACTATTTTGTAGGACATGCAT 58.888 34.615 0.00 0.00 0.00 3.96
237 238 8.264347 TCAGAACTATTTTGTAGGACATGCATA 58.736 33.333 0.00 0.00 0.00 3.14
238 239 8.338259 CAGAACTATTTTGTAGGACATGCATAC 58.662 37.037 0.00 0.00 34.47 2.39
239 240 6.844696 ACTATTTTGTAGGACATGCATACG 57.155 37.500 0.00 0.00 36.59 3.06
240 241 4.552166 ATTTTGTAGGACATGCATACGC 57.448 40.909 0.00 0.00 36.59 4.42
241 242 1.948104 TTGTAGGACATGCATACGCC 58.052 50.000 0.00 0.74 36.59 5.68
242 243 0.827368 TGTAGGACATGCATACGCCA 59.173 50.000 0.00 0.00 36.59 5.69
243 244 1.208293 TGTAGGACATGCATACGCCAA 59.792 47.619 0.00 0.00 36.59 4.52
244 245 2.158827 TGTAGGACATGCATACGCCAAT 60.159 45.455 0.00 0.00 36.59 3.16
245 246 2.057137 AGGACATGCATACGCCAATT 57.943 45.000 0.00 0.00 37.32 2.32
246 247 2.378038 AGGACATGCATACGCCAATTT 58.622 42.857 0.00 0.00 37.32 1.82
247 248 3.550820 AGGACATGCATACGCCAATTTA 58.449 40.909 0.00 0.00 37.32 1.40
248 249 3.951037 AGGACATGCATACGCCAATTTAA 59.049 39.130 0.00 0.00 37.32 1.52
249 250 4.584325 AGGACATGCATACGCCAATTTAAT 59.416 37.500 0.00 0.00 37.32 1.40
250 251 5.068987 AGGACATGCATACGCCAATTTAATT 59.931 36.000 0.00 0.00 37.32 1.40
251 252 5.175491 GGACATGCATACGCCAATTTAATTG 59.825 40.000 10.46 10.46 39.94 2.32
252 253 5.659463 ACATGCATACGCCAATTTAATTGT 58.341 33.333 15.40 1.43 38.59 2.71
253 254 6.105333 ACATGCATACGCCAATTTAATTGTT 58.895 32.000 15.40 3.59 38.59 2.83
254 255 6.255453 ACATGCATACGCCAATTTAATTGTTC 59.745 34.615 15.40 6.93 38.59 3.18
255 256 5.105752 TGCATACGCCAATTTAATTGTTCC 58.894 37.500 15.40 4.16 38.59 3.62
256 257 5.105752 GCATACGCCAATTTAATTGTTCCA 58.894 37.500 15.40 0.52 38.59 3.53
257 258 5.752955 GCATACGCCAATTTAATTGTTCCAT 59.247 36.000 15.40 2.60 38.59 3.41
258 259 6.074356 GCATACGCCAATTTAATTGTTCCATC 60.074 38.462 15.40 0.00 38.59 3.51
259 260 5.659440 ACGCCAATTTAATTGTTCCATCT 57.341 34.783 15.40 0.00 38.59 2.90
260 261 5.650543 ACGCCAATTTAATTGTTCCATCTC 58.349 37.500 15.40 0.00 38.59 2.75
261 262 5.043248 CGCCAATTTAATTGTTCCATCTCC 58.957 41.667 15.40 0.00 38.59 3.71
262 263 5.394005 CGCCAATTTAATTGTTCCATCTCCA 60.394 40.000 15.40 0.00 38.59 3.86
263 264 6.405538 GCCAATTTAATTGTTCCATCTCCAA 58.594 36.000 15.40 0.00 38.59 3.53
264 265 7.049754 GCCAATTTAATTGTTCCATCTCCAAT 58.950 34.615 15.40 0.00 38.59 3.16
265 266 8.203485 GCCAATTTAATTGTTCCATCTCCAATA 58.797 33.333 15.40 0.00 38.59 1.90
266 267 9.754382 CCAATTTAATTGTTCCATCTCCAATAG 57.246 33.333 15.40 0.00 38.59 1.73
269 270 8.519799 TTTAATTGTTCCATCTCCAATAGTCC 57.480 34.615 0.00 0.00 0.00 3.85
270 271 5.715439 ATTGTTCCATCTCCAATAGTCCA 57.285 39.130 0.00 0.00 0.00 4.02
271 272 5.512942 TTGTTCCATCTCCAATAGTCCAA 57.487 39.130 0.00 0.00 0.00 3.53
272 273 4.843728 TGTTCCATCTCCAATAGTCCAAC 58.156 43.478 0.00 0.00 0.00 3.77
273 274 4.288366 TGTTCCATCTCCAATAGTCCAACA 59.712 41.667 0.00 0.00 0.00 3.33
274 275 5.044919 TGTTCCATCTCCAATAGTCCAACAT 60.045 40.000 0.00 0.00 0.00 2.71
275 276 6.157820 TGTTCCATCTCCAATAGTCCAACATA 59.842 38.462 0.00 0.00 0.00 2.29
276 277 6.174720 TCCATCTCCAATAGTCCAACATAC 57.825 41.667 0.00 0.00 0.00 2.39
277 278 5.665360 TCCATCTCCAATAGTCCAACATACA 59.335 40.000 0.00 0.00 0.00 2.29
278 279 6.329986 TCCATCTCCAATAGTCCAACATACAT 59.670 38.462 0.00 0.00 0.00 2.29
279 280 6.429078 CCATCTCCAATAGTCCAACATACATG 59.571 42.308 0.00 0.00 0.00 3.21
280 281 5.368145 TCTCCAATAGTCCAACATACATGC 58.632 41.667 0.00 0.00 0.00 4.06
281 282 5.104569 TCTCCAATAGTCCAACATACATGCA 60.105 40.000 0.00 0.00 0.00 3.96
282 283 5.693961 TCCAATAGTCCAACATACATGCAT 58.306 37.500 0.00 0.00 0.00 3.96
283 284 6.836242 TCCAATAGTCCAACATACATGCATA 58.164 36.000 0.00 0.00 0.00 3.14
284 285 6.710295 TCCAATAGTCCAACATACATGCATAC 59.290 38.462 0.00 0.00 0.00 2.39
285 286 6.072508 CCAATAGTCCAACATACATGCATACC 60.073 42.308 0.00 0.00 0.00 2.73
286 287 3.820557 AGTCCAACATACATGCATACCC 58.179 45.455 0.00 0.00 0.00 3.69
287 288 3.459598 AGTCCAACATACATGCATACCCT 59.540 43.478 0.00 0.00 0.00 4.34
288 289 4.079787 AGTCCAACATACATGCATACCCTT 60.080 41.667 0.00 0.00 0.00 3.95
289 290 4.644685 GTCCAACATACATGCATACCCTTT 59.355 41.667 0.00 0.00 0.00 3.11
290 291 4.644234 TCCAACATACATGCATACCCTTTG 59.356 41.667 0.00 0.75 0.00 2.77
291 292 4.402155 CCAACATACATGCATACCCTTTGT 59.598 41.667 0.00 0.00 0.00 2.83
292 293 5.105392 CCAACATACATGCATACCCTTTGTT 60.105 40.000 0.00 1.61 0.00 2.83
293 294 6.397272 CAACATACATGCATACCCTTTGTTT 58.603 36.000 0.00 0.00 0.00 2.83
294 295 7.363355 CCAACATACATGCATACCCTTTGTTTA 60.363 37.037 0.00 0.00 0.00 2.01
295 296 7.095695 ACATACATGCATACCCTTTGTTTAC 57.904 36.000 0.00 0.00 0.00 2.01
296 297 6.661377 ACATACATGCATACCCTTTGTTTACA 59.339 34.615 0.00 0.00 0.00 2.41
297 298 7.341769 ACATACATGCATACCCTTTGTTTACAT 59.658 33.333 0.00 0.00 0.00 2.29
298 299 8.845227 CATACATGCATACCCTTTGTTTACATA 58.155 33.333 0.00 0.00 0.00 2.29
299 300 7.896383 ACATGCATACCCTTTGTTTACATAT 57.104 32.000 0.00 0.00 0.00 1.78
300 301 8.988546 ACATGCATACCCTTTGTTTACATATA 57.011 30.769 0.00 0.00 0.00 0.86
301 302 9.415008 ACATGCATACCCTTTGTTTACATATAA 57.585 29.630 0.00 0.00 0.00 0.98
344 345 8.992835 AGCTTTCAATTTAGGTCATTTCATTC 57.007 30.769 0.00 0.00 0.00 2.67
345 346 8.587608 AGCTTTCAATTTAGGTCATTTCATTCA 58.412 29.630 0.00 0.00 0.00 2.57
346 347 9.374838 GCTTTCAATTTAGGTCATTTCATTCAT 57.625 29.630 0.00 0.00 0.00 2.57
379 380 9.691362 TGTGTTCAAAATTAATCTTTAAGCTCC 57.309 29.630 0.00 0.00 0.00 4.70
380 381 9.140286 GTGTTCAAAATTAATCTTTAAGCTCCC 57.860 33.333 0.00 0.00 0.00 4.30
381 382 8.026607 TGTTCAAAATTAATCTTTAAGCTCCCG 58.973 33.333 0.00 0.00 0.00 5.14
382 383 6.560711 TCAAAATTAATCTTTAAGCTCCCGC 58.439 36.000 0.00 0.00 0.00 6.13
383 384 6.151985 TCAAAATTAATCTTTAAGCTCCCGCA 59.848 34.615 0.00 0.00 39.10 5.69
384 385 5.757850 AATTAATCTTTAAGCTCCCGCAG 57.242 39.130 0.00 0.00 39.10 5.18
401 402 4.829518 GCAACGCGCGGGGAAATC 62.830 66.667 35.22 11.46 0.00 2.17
402 403 3.427425 CAACGCGCGGGGAAATCA 61.427 61.111 35.22 0.00 0.00 2.57
403 404 3.428282 AACGCGCGGGGAAATCAC 61.428 61.111 35.22 0.00 0.00 3.06
406 407 2.188469 GCGCGGGGAAATCACCTA 59.812 61.111 8.83 0.00 37.25 3.08
407 408 1.887707 GCGCGGGGAAATCACCTAG 60.888 63.158 8.83 0.00 37.25 3.02
408 409 1.520666 CGCGGGGAAATCACCTAGT 59.479 57.895 0.00 0.00 37.25 2.57
409 410 0.107848 CGCGGGGAAATCACCTAGTT 60.108 55.000 0.00 0.00 37.25 2.24
410 411 1.677820 CGCGGGGAAATCACCTAGTTT 60.678 52.381 0.00 0.00 37.25 2.66
411 412 2.443416 GCGGGGAAATCACCTAGTTTT 58.557 47.619 0.00 0.00 37.25 2.43
412 413 2.823747 GCGGGGAAATCACCTAGTTTTT 59.176 45.455 0.00 0.00 37.25 1.94
413 414 4.011698 GCGGGGAAATCACCTAGTTTTTA 58.988 43.478 0.00 0.00 37.25 1.52
414 415 4.643334 GCGGGGAAATCACCTAGTTTTTAT 59.357 41.667 0.00 0.00 37.25 1.40
415 416 5.126545 GCGGGGAAATCACCTAGTTTTTATT 59.873 40.000 0.00 0.00 37.25 1.40
416 417 6.319405 GCGGGGAAATCACCTAGTTTTTATTA 59.681 38.462 0.00 0.00 37.25 0.98
417 418 7.013942 GCGGGGAAATCACCTAGTTTTTATTAT 59.986 37.037 0.00 0.00 37.25 1.28
418 419 8.349983 CGGGGAAATCACCTAGTTTTTATTATG 58.650 37.037 0.00 0.00 37.25 1.90
419 420 9.197306 GGGGAAATCACCTAGTTTTTATTATGT 57.803 33.333 0.00 0.00 36.20 2.29
425 426 8.356000 TCACCTAGTTTTTATTATGTTTGGGG 57.644 34.615 0.00 0.00 0.00 4.96
426 427 7.039270 CACCTAGTTTTTATTATGTTTGGGGC 58.961 38.462 0.00 0.00 0.00 5.80
427 428 6.127563 ACCTAGTTTTTATTATGTTTGGGGCG 60.128 38.462 0.00 0.00 0.00 6.13
428 429 4.500127 AGTTTTTATTATGTTTGGGGCGC 58.500 39.130 0.00 0.00 0.00 6.53
429 430 4.221924 AGTTTTTATTATGTTTGGGGCGCT 59.778 37.500 7.64 0.00 0.00 5.92
430 431 4.810191 TTTTATTATGTTTGGGGCGCTT 57.190 36.364 7.64 0.00 0.00 4.68
431 432 4.810191 TTTATTATGTTTGGGGCGCTTT 57.190 36.364 7.64 0.00 0.00 3.51
432 433 2.671130 ATTATGTTTGGGGCGCTTTG 57.329 45.000 7.64 0.00 0.00 2.77
433 434 0.037790 TTATGTTTGGGGCGCTTTGC 60.038 50.000 7.64 0.00 45.38 3.68
440 441 4.404654 GGGCGCTTTGCACTTCCG 62.405 66.667 7.64 0.00 46.33 4.30
442 443 3.660111 GCGCTTTGCACTTCCGGT 61.660 61.111 0.00 0.00 45.45 5.28
513 514 9.495572 AGTAACTTTGACCTAGAAAAATCTCAG 57.504 33.333 0.00 0.00 0.00 3.35
514 515 9.490379 GTAACTTTGACCTAGAAAAATCTCAGA 57.510 33.333 0.00 0.00 0.00 3.27
515 516 8.980481 AACTTTGACCTAGAAAAATCTCAGAA 57.020 30.769 0.00 0.00 0.00 3.02
516 517 8.384607 ACTTTGACCTAGAAAAATCTCAGAAC 57.615 34.615 0.00 0.00 0.00 3.01
517 518 8.214364 ACTTTGACCTAGAAAAATCTCAGAACT 58.786 33.333 0.00 0.00 0.00 3.01
518 519 8.980481 TTTGACCTAGAAAAATCTCAGAACTT 57.020 30.769 0.00 0.00 0.00 2.66
519 520 8.980481 TTGACCTAGAAAAATCTCAGAACTTT 57.020 30.769 0.00 0.00 0.00 2.66
541 542 2.547171 TTTTTGGGACGGAGGGAGT 58.453 52.632 0.00 0.00 0.00 3.85
542 543 1.732117 TTTTTGGGACGGAGGGAGTA 58.268 50.000 0.00 0.00 0.00 2.59
543 544 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
544 545 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
545 546 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
546 547 1.961133 TGGGACGGAGGGAGTATTTT 58.039 50.000 0.00 0.00 0.00 1.82
547 548 2.271777 TGGGACGGAGGGAGTATTTTT 58.728 47.619 0.00 0.00 0.00 1.94
572 573 7.589574 TTTTTACTTTTCAGGAGTGTTTTGC 57.410 32.000 0.00 0.00 0.00 3.68
573 574 6.524101 TTTACTTTTCAGGAGTGTTTTGCT 57.476 33.333 0.00 0.00 0.00 3.91
574 575 7.633193 TTTACTTTTCAGGAGTGTTTTGCTA 57.367 32.000 0.00 0.00 0.00 3.49
575 576 5.500645 ACTTTTCAGGAGTGTTTTGCTAC 57.499 39.130 0.00 0.00 0.00 3.58
576 577 5.193679 ACTTTTCAGGAGTGTTTTGCTACT 58.806 37.500 0.00 0.00 0.00 2.57
577 578 6.354130 ACTTTTCAGGAGTGTTTTGCTACTA 58.646 36.000 0.00 0.00 0.00 1.82
578 579 6.826741 ACTTTTCAGGAGTGTTTTGCTACTAA 59.173 34.615 0.00 0.00 0.00 2.24
584 585 8.372459 TCAGGAGTGTTTTGCTACTAATAAGAA 58.628 33.333 0.00 0.00 0.00 2.52
585 586 8.999431 CAGGAGTGTTTTGCTACTAATAAGAAA 58.001 33.333 0.00 0.00 0.00 2.52
606 607 6.973474 AGAAATTTTAGATCACTCTACGTCCG 59.027 38.462 0.00 0.00 33.66 4.79
620 621 0.383860 CGTCCGAACGCTTTTTCCAC 60.384 55.000 0.00 0.00 42.82 4.02
772 798 1.205655 CGCTCTCATCTCAGGTCCAAA 59.794 52.381 0.00 0.00 0.00 3.28
1384 1421 1.172812 GCCGTCCTTTCTTGTTGCCT 61.173 55.000 0.00 0.00 0.00 4.75
1466 1503 2.921754 GCAAAGCATGTCAGAATTCAGC 59.078 45.455 8.44 1.99 0.00 4.26
1469 1506 3.069079 AGCATGTCAGAATTCAGCAGT 57.931 42.857 8.44 0.00 0.00 4.40
1470 1507 2.747989 AGCATGTCAGAATTCAGCAGTG 59.252 45.455 8.44 2.35 0.00 3.66
1471 1508 2.731341 GCATGTCAGAATTCAGCAGTGC 60.731 50.000 7.13 7.13 0.00 4.40
1472 1509 2.556144 TGTCAGAATTCAGCAGTGCT 57.444 45.000 13.14 13.14 40.77 4.40
1473 1510 2.420642 TGTCAGAATTCAGCAGTGCTC 58.579 47.619 16.58 3.62 36.40 4.26
1501 1538 7.587037 TCTCTTTTCCAAAACATGTCAGATT 57.413 32.000 0.00 0.00 0.00 2.40
1502 1539 7.651808 TCTCTTTTCCAAAACATGTCAGATTC 58.348 34.615 0.00 0.00 0.00 2.52
1612 1653 9.717892 CAATGTATCATCTTGAAACTGAATCTG 57.282 33.333 0.00 0.00 0.00 2.90
1613 1654 9.458727 AATGTATCATCTTGAAACTGAATCTGT 57.541 29.630 0.00 0.00 0.00 3.41
1614 1655 8.484641 TGTATCATCTTGAAACTGAATCTGTC 57.515 34.615 0.00 0.00 0.00 3.51
1615 1656 8.316946 TGTATCATCTTGAAACTGAATCTGTCT 58.683 33.333 0.00 0.00 0.00 3.41
1616 1657 9.809096 GTATCATCTTGAAACTGAATCTGTCTA 57.191 33.333 0.00 0.00 0.00 2.59
1617 1658 8.715191 ATCATCTTGAAACTGAATCTGTCTAC 57.285 34.615 0.00 0.00 0.00 2.59
1618 1659 7.670364 TCATCTTGAAACTGAATCTGTCTACA 58.330 34.615 0.00 0.00 0.00 2.74
1620 1661 8.602328 CATCTTGAAACTGAATCTGTCTACATC 58.398 37.037 0.00 0.00 0.00 3.06
1621 1662 7.901029 TCTTGAAACTGAATCTGTCTACATCT 58.099 34.615 0.00 0.00 0.00 2.90
1623 1664 6.997655 TGAAACTGAATCTGTCTACATCTGT 58.002 36.000 0.00 0.00 0.00 3.41
1624 1665 7.093354 TGAAACTGAATCTGTCTACATCTGTC 58.907 38.462 0.00 0.00 0.00 3.51
1626 1667 7.946381 AACTGAATCTGTCTACATCTGTCTA 57.054 36.000 0.00 0.00 0.00 2.59
1627 1668 7.328277 ACTGAATCTGTCTACATCTGTCTAC 57.672 40.000 0.00 0.00 0.00 2.59
1629 1670 5.880887 TGAATCTGTCTACATCTGTCTACGT 59.119 40.000 0.00 0.00 0.00 3.57
1630 1671 6.374613 TGAATCTGTCTACATCTGTCTACGTT 59.625 38.462 0.00 0.00 0.00 3.99
1631 1672 5.547181 TCTGTCTACATCTGTCTACGTTG 57.453 43.478 0.00 0.00 0.00 4.10
1632 1673 4.395231 TCTGTCTACATCTGTCTACGTTGG 59.605 45.833 0.00 0.00 0.00 3.77
1633 1674 3.119602 TGTCTACATCTGTCTACGTTGGC 60.120 47.826 0.00 0.00 0.00 4.52
1634 1675 2.426024 TCTACATCTGTCTACGTTGGCC 59.574 50.000 0.00 0.00 0.00 5.36
1635 1676 0.973632 ACATCTGTCTACGTTGGCCA 59.026 50.000 0.00 0.00 0.00 5.36
1636 1677 1.066858 ACATCTGTCTACGTTGGCCAG 60.067 52.381 5.11 0.00 0.00 4.85
1637 1678 0.108138 ATCTGTCTACGTTGGCCAGC 60.108 55.000 10.00 10.00 0.00 4.85
1638 1679 1.005037 CTGTCTACGTTGGCCAGCA 60.005 57.895 20.42 0.00 0.00 4.41
1639 1680 0.602638 CTGTCTACGTTGGCCAGCAA 60.603 55.000 20.42 5.93 0.00 3.91
1640 1681 0.179043 TGTCTACGTTGGCCAGCAAA 60.179 50.000 20.42 5.55 0.00 3.68
1641 1682 0.517316 GTCTACGTTGGCCAGCAAAG 59.483 55.000 20.42 15.10 0.00 2.77
1642 1683 1.210155 CTACGTTGGCCAGCAAAGC 59.790 57.895 20.42 0.35 0.00 3.51
1643 1684 1.514678 CTACGTTGGCCAGCAAAGCA 61.515 55.000 20.42 0.00 0.00 3.91
1644 1685 0.893270 TACGTTGGCCAGCAAAGCAT 60.893 50.000 20.42 0.00 0.00 3.79
1645 1686 1.005867 CGTTGGCCAGCAAAGCATT 60.006 52.632 20.42 0.00 0.00 3.56
1646 1687 0.243365 CGTTGGCCAGCAAAGCATTA 59.757 50.000 20.42 0.00 0.00 1.90
1647 1688 1.336702 CGTTGGCCAGCAAAGCATTAA 60.337 47.619 20.42 0.00 0.00 1.40
1648 1689 2.068519 GTTGGCCAGCAAAGCATTAAC 58.931 47.619 15.64 0.00 0.00 2.01
1649 1690 0.607620 TGGCCAGCAAAGCATTAACC 59.392 50.000 0.00 0.00 0.00 2.85
1650 1691 0.607620 GGCCAGCAAAGCATTAACCA 59.392 50.000 0.00 0.00 0.00 3.67
1651 1692 1.404583 GGCCAGCAAAGCATTAACCAG 60.405 52.381 0.00 0.00 0.00 4.00
1652 1693 2.000429 CCAGCAAAGCATTAACCAGC 58.000 50.000 0.00 0.00 0.00 4.85
1653 1694 1.404583 CCAGCAAAGCATTAACCAGCC 60.405 52.381 0.00 0.00 0.00 4.85
1654 1695 1.273048 CAGCAAAGCATTAACCAGCCA 59.727 47.619 0.00 0.00 0.00 4.75
1655 1696 1.273327 AGCAAAGCATTAACCAGCCAC 59.727 47.619 0.00 0.00 0.00 5.01
1656 1697 1.000731 GCAAAGCATTAACCAGCCACA 59.999 47.619 0.00 0.00 0.00 4.17
1657 1698 2.354003 GCAAAGCATTAACCAGCCACAT 60.354 45.455 0.00 0.00 0.00 3.21
1658 1699 3.865684 GCAAAGCATTAACCAGCCACATT 60.866 43.478 0.00 0.00 0.00 2.71
1659 1700 3.598019 AAGCATTAACCAGCCACATTG 57.402 42.857 0.00 0.00 0.00 2.82
1660 1701 2.528564 AGCATTAACCAGCCACATTGT 58.471 42.857 0.00 0.00 0.00 2.71
1661 1702 2.899256 AGCATTAACCAGCCACATTGTT 59.101 40.909 0.00 0.00 0.00 2.83
1662 1703 3.324556 AGCATTAACCAGCCACATTGTTT 59.675 39.130 0.00 0.00 0.00 2.83
1663 1704 3.679502 GCATTAACCAGCCACATTGTTTC 59.320 43.478 0.00 0.00 0.00 2.78
1674 1715 6.094464 CAGCCACATTGTTTCATCTCTGAATA 59.906 38.462 0.00 0.00 40.95 1.75
1779 1820 2.761208 GAGAAGGAAGATCGACCCAGAA 59.239 50.000 7.43 0.00 0.00 3.02
1818 1859 2.596851 GCTCCAGGAGTGCTGGGAA 61.597 63.158 28.39 11.11 42.03 3.97
1851 1892 1.133253 CAACTTCGATGCACGGCTG 59.867 57.895 8.46 0.00 42.82 4.85
1860 1901 2.051882 GCACGGCTGCGCATATTC 60.052 61.111 12.24 0.00 32.44 1.75
2000 2041 1.479709 AGATGAGGTCAAGGAGGTCG 58.520 55.000 0.00 0.00 0.00 4.79
2043 2088 1.246737 CCTGCCCTTCTCCACAAAGC 61.247 60.000 0.00 0.00 0.00 3.51
2044 2089 1.228552 TGCCCTTCTCCACAAAGCC 60.229 57.895 0.00 0.00 0.00 4.35
2045 2090 1.228552 GCCCTTCTCCACAAAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
2046 2091 1.246737 GCCCTTCTCCACAAAGCCAG 61.247 60.000 0.00 0.00 0.00 4.85
2047 2092 1.246737 CCCTTCTCCACAAAGCCAGC 61.247 60.000 0.00 0.00 0.00 4.85
2101 2146 1.011463 GATCATTGTGCTGAGCGCG 60.011 57.895 13.80 0.00 42.51 6.86
2137 2182 1.271656 GCCAAGCTGAAGAAACATGCT 59.728 47.619 0.00 0.00 35.30 3.79
2164 2209 1.664017 CGCCTCGCTCATCATGGAG 60.664 63.158 0.00 0.00 37.97 3.86
2218 2263 5.596361 TGAGGTGCCAAGAAATGAAAACTTA 59.404 36.000 0.00 0.00 0.00 2.24
2465 2510 3.048600 TGGAAGAGGATATGGTTCCTGG 58.951 50.000 0.00 0.00 46.35 4.45
2548 2593 1.141881 CGTCTTCGAGGTGATGGGG 59.858 63.158 0.00 0.00 39.71 4.96
2635 2680 3.632700 GTGTGCCGAAACACGCTA 58.367 55.556 5.06 0.00 45.46 4.26
2647 2692 2.094659 CACGCTAACAGCACTCCGG 61.095 63.158 0.00 0.00 42.58 5.14
2766 2812 1.141657 ACATCTTACCGGCATCTGCAT 59.858 47.619 0.00 0.00 44.36 3.96
2969 3015 2.162681 CCAACATGGGGAACTCTGTTC 58.837 52.381 0.00 2.16 34.30 3.18
3039 3085 1.689813 TCTCCTTTACACTGGCGACAA 59.310 47.619 0.00 0.00 42.06 3.18
3040 3086 1.798813 CTCCTTTACACTGGCGACAAC 59.201 52.381 0.00 0.00 42.06 3.32
3078 3124 2.747460 TGAAGCTGCCATCGCCAC 60.747 61.111 0.00 0.00 0.00 5.01
3080 3126 2.749044 AAGCTGCCATCGCCACTG 60.749 61.111 0.00 0.00 0.00 3.66
3405 3451 9.422681 TCAAGGTAAGCTATAGATTCTACAAGT 57.577 33.333 6.50 0.00 0.00 3.16
3437 3483 9.959721 ACATACAAGTTTCCTCAGTATACATTT 57.040 29.630 5.50 0.00 0.00 2.32
3447 3493 8.856153 TCCTCAGTATACATTTTAAAGTGCAA 57.144 30.769 10.35 0.38 0.00 4.08
3461 3507 8.445275 TTTAAAGTGCAAGTATCACAAGAGAA 57.555 30.769 0.00 0.00 36.93 2.87
3470 3516 7.764443 GCAAGTATCACAAGAGAACTGGTAATA 59.236 37.037 0.00 0.00 0.00 0.98
3471 3517 9.823647 CAAGTATCACAAGAGAACTGGTAATAT 57.176 33.333 0.00 0.00 0.00 1.28
3476 3522 8.662781 TCACAAGAGAACTGGTAATATTATGC 57.337 34.615 0.00 0.00 0.00 3.14
3599 3645 3.500680 TCTTTGTAAAATGCCCAGACGTC 59.499 43.478 7.70 7.70 0.00 4.34
3644 3690 6.442961 TCCCATCATCCATATTTTCCAAGTT 58.557 36.000 0.00 0.00 0.00 2.66
3857 3903 3.235200 ACTTGTGAGGAGCTTACACTCT 58.765 45.455 15.82 0.00 36.87 3.24
3858 3904 4.408276 ACTTGTGAGGAGCTTACACTCTA 58.592 43.478 15.82 5.32 36.87 2.43
4302 4351 7.662669 AGATGCACAAAAGCCTAAAATGAATTT 59.337 29.630 0.00 0.00 34.92 1.82
4477 4537 0.457853 GCGATGTACTGCTCAACCGA 60.458 55.000 0.00 0.00 0.00 4.69
4512 4572 1.071699 ACAGCAACGTCCCACATAGTT 59.928 47.619 0.00 0.00 0.00 2.24
4713 4776 1.398234 CCTCCCTTCTCCCTCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
5095 5164 3.996480 ACTTCTAACTTGTGAGGTCAGC 58.004 45.455 0.00 0.00 0.00 4.26
5096 5165 2.724977 TCTAACTTGTGAGGTCAGCG 57.275 50.000 0.00 0.00 0.00 5.18
5138 5207 1.066303 CGGGTAGCAGTTCTAGCTCTG 59.934 57.143 0.00 8.85 43.47 3.35
5168 5237 1.918957 GAGGGAGCTGGGGCATATATT 59.081 52.381 0.00 0.00 41.70 1.28
5169 5238 3.115390 GAGGGAGCTGGGGCATATATTA 58.885 50.000 0.00 0.00 41.70 0.98
5182 5251 8.152246 TGGGGCATATATTAGTGTACAAACTAC 58.848 37.037 0.00 0.00 32.39 2.73
5196 5265 5.438761 ACAAACTACATGGAGTGAAAAGC 57.561 39.130 12.48 0.00 0.00 3.51
5201 5270 5.804639 ACTACATGGAGTGAAAAGCATGTA 58.195 37.500 10.64 0.00 35.31 2.29
5223 5292 2.821546 CGTTAGTTATAGCTGCTGCCA 58.178 47.619 13.43 0.00 40.80 4.92
5236 5305 1.417517 TGCTGCCACACATAGATAGGG 59.582 52.381 0.00 0.00 0.00 3.53
5340 5411 5.278022 GGCTCGGTTCAAAATTGATAGGATC 60.278 44.000 0.00 0.00 37.00 3.36
5341 5412 5.296780 GCTCGGTTCAAAATTGATAGGATCA 59.703 40.000 0.00 0.00 37.00 2.92
5356 5428 3.094572 AGGATCAAGTTTGGATTGGCTG 58.905 45.455 0.00 0.00 0.00 4.85
5363 5435 7.060383 TCAAGTTTGGATTGGCTGAAAATTA 57.940 32.000 0.00 0.00 0.00 1.40
5366 5438 7.967890 AGTTTGGATTGGCTGAAAATTAAAG 57.032 32.000 0.00 0.00 0.00 1.85
5390 5462 6.040842 AGTGAGCCATTTACTCATTTTGTTGT 59.959 34.615 0.00 0.00 45.40 3.32
5394 5466 7.721402 AGCCATTTACTCATTTTGTTGTAACA 58.279 30.769 0.00 0.00 37.08 2.41
5435 5507 7.000575 TCGGATTCGTTAGCTTGATAAAAAG 57.999 36.000 0.00 0.00 37.69 2.27
5484 5558 4.789012 TTCAAGTCAATCTGCCCATTTC 57.211 40.909 0.00 0.00 0.00 2.17
5622 5697 2.198304 GAGGAATCCCTGGTTGCCGT 62.198 60.000 0.00 0.00 44.53 5.68
5623 5698 1.749258 GGAATCCCTGGTTGCCGTC 60.749 63.158 0.00 0.00 0.00 4.79
5879 5956 1.076014 CCACCGTTAGGGGCCTTTT 59.924 57.895 0.84 0.00 40.48 2.27
5885 5962 0.526211 GTTAGGGGCCTTTTGCTTCG 59.474 55.000 0.84 0.00 40.92 3.79
5886 5963 0.111639 TTAGGGGCCTTTTGCTTCGT 59.888 50.000 0.84 0.00 40.92 3.85
5890 5967 1.947456 GGGGCCTTTTGCTTCGTATAG 59.053 52.381 0.84 0.00 40.92 1.31
5923 6000 7.009815 CACTAGCTGTTTGATAAAATGCCAATG 59.990 37.037 0.00 0.00 0.00 2.82
5961 6051 0.588252 AGTGATGCAACAACACTCGC 59.412 50.000 0.00 0.00 42.32 5.03
6031 6121 6.070653 AGCCAAATACATGTGAAAATGTGGAT 60.071 34.615 16.69 9.49 40.93 3.41
6033 6123 7.119553 GCCAAATACATGTGAAAATGTGGATTT 59.880 33.333 16.69 5.23 40.93 2.17
6034 6124 9.001542 CCAAATACATGTGAAAATGTGGATTTT 57.998 29.630 9.11 0.00 43.20 1.82
6037 6127 6.864360 ACATGTGAAAATGTGGATTTTTGG 57.136 33.333 0.00 0.00 41.06 3.28
6038 6128 5.764192 ACATGTGAAAATGTGGATTTTTGGG 59.236 36.000 0.00 0.00 41.06 4.12
6076 6166 3.745797 GCCTGTTCATAAGGTCTGGATCC 60.746 52.174 4.20 4.20 37.13 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.823799 ACTGAAAGGTCATTGTTTTTCATTTGT 59.176 29.630 10.82 6.04 38.45 2.83
1 2 8.117988 CACTGAAAGGTCATTGTTTTTCATTTG 58.882 33.333 10.82 8.79 38.45 2.32
2 3 8.040132 TCACTGAAAGGTCATTGTTTTTCATTT 58.960 29.630 10.82 0.00 38.45 2.32
3 4 7.555087 TCACTGAAAGGTCATTGTTTTTCATT 58.445 30.769 10.82 5.85 38.45 2.57
4 5 7.111247 TCACTGAAAGGTCATTGTTTTTCAT 57.889 32.000 10.82 3.62 38.45 2.57
5 6 6.522625 TCACTGAAAGGTCATTGTTTTTCA 57.477 33.333 10.30 10.30 39.30 2.69
6 7 7.202526 TGATCACTGAAAGGTCATTGTTTTTC 58.797 34.615 0.00 0.00 39.30 2.29
7 8 7.111247 TGATCACTGAAAGGTCATTGTTTTT 57.889 32.000 0.00 0.00 39.30 1.94
8 9 6.713762 TGATCACTGAAAGGTCATTGTTTT 57.286 33.333 0.00 0.00 39.30 2.43
9 10 6.713762 TTGATCACTGAAAGGTCATTGTTT 57.286 33.333 0.00 0.00 39.30 2.83
10 11 6.906157 ATTGATCACTGAAAGGTCATTGTT 57.094 33.333 0.00 0.00 39.30 2.83
11 12 7.120285 CACTATTGATCACTGAAAGGTCATTGT 59.880 37.037 0.00 0.00 39.30 2.71
12 13 7.335171 TCACTATTGATCACTGAAAGGTCATTG 59.665 37.037 0.00 0.00 39.30 2.82
13 14 7.397221 TCACTATTGATCACTGAAAGGTCATT 58.603 34.615 0.00 0.00 39.30 2.57
14 15 6.950842 TCACTATTGATCACTGAAAGGTCAT 58.049 36.000 0.00 0.00 39.30 3.06
15 16 6.358974 TCACTATTGATCACTGAAAGGTCA 57.641 37.500 0.00 0.00 39.30 4.02
16 17 8.200792 ACTATCACTATTGATCACTGAAAGGTC 58.799 37.037 0.00 0.00 41.87 3.85
17 18 8.083828 ACTATCACTATTGATCACTGAAAGGT 57.916 34.615 0.00 0.00 41.87 3.50
18 19 7.380870 CGACTATCACTATTGATCACTGAAAGG 59.619 40.741 0.00 0.00 41.87 3.11
19 20 7.096271 GCGACTATCACTATTGATCACTGAAAG 60.096 40.741 0.00 0.00 41.87 2.62
20 21 6.697455 GCGACTATCACTATTGATCACTGAAA 59.303 38.462 0.00 0.00 41.87 2.69
21 22 6.183360 TGCGACTATCACTATTGATCACTGAA 60.183 38.462 0.00 0.00 41.87 3.02
22 23 5.299279 TGCGACTATCACTATTGATCACTGA 59.701 40.000 0.00 0.00 41.87 3.41
23 24 5.523369 TGCGACTATCACTATTGATCACTG 58.477 41.667 0.00 0.00 41.87 3.66
24 25 5.774498 TGCGACTATCACTATTGATCACT 57.226 39.130 0.00 0.00 41.87 3.41
25 26 5.980116 ACTTGCGACTATCACTATTGATCAC 59.020 40.000 0.00 0.00 41.87 3.06
26 27 6.149129 ACTTGCGACTATCACTATTGATCA 57.851 37.500 0.00 0.00 41.87 2.92
27 28 6.697455 TCAACTTGCGACTATCACTATTGATC 59.303 38.462 0.00 0.00 41.87 2.92
28 29 6.477033 GTCAACTTGCGACTATCACTATTGAT 59.523 38.462 0.85 0.85 45.04 2.57
29 30 5.805486 GTCAACTTGCGACTATCACTATTGA 59.195 40.000 0.00 0.00 35.73 2.57
30 31 5.576774 TGTCAACTTGCGACTATCACTATTG 59.423 40.000 0.00 0.00 34.37 1.90
31 32 5.720202 TGTCAACTTGCGACTATCACTATT 58.280 37.500 0.00 0.00 34.37 1.73
32 33 5.324784 TGTCAACTTGCGACTATCACTAT 57.675 39.130 0.00 0.00 34.37 2.12
33 34 4.776795 TGTCAACTTGCGACTATCACTA 57.223 40.909 0.00 0.00 34.37 2.74
34 35 3.660501 TGTCAACTTGCGACTATCACT 57.339 42.857 0.00 0.00 34.37 3.41
35 36 6.589830 AATATGTCAACTTGCGACTATCAC 57.410 37.500 0.00 0.00 34.37 3.06
36 37 7.041721 AGAAATATGTCAACTTGCGACTATCA 58.958 34.615 0.00 0.00 34.37 2.15
37 38 7.470289 AGAAATATGTCAACTTGCGACTATC 57.530 36.000 0.00 0.00 34.37 2.08
38 39 7.334421 ACAAGAAATATGTCAACTTGCGACTAT 59.666 33.333 0.00 0.00 40.72 2.12
39 40 6.649141 ACAAGAAATATGTCAACTTGCGACTA 59.351 34.615 0.00 0.00 40.72 2.59
40 41 5.470098 ACAAGAAATATGTCAACTTGCGACT 59.530 36.000 0.00 0.00 40.72 4.18
41 42 5.689819 ACAAGAAATATGTCAACTTGCGAC 58.310 37.500 0.00 0.00 40.72 5.19
42 43 5.940192 ACAAGAAATATGTCAACTTGCGA 57.060 34.783 0.00 0.00 40.72 5.10
43 44 6.738200 CACTACAAGAAATATGTCAACTTGCG 59.262 38.462 0.00 0.00 40.72 4.85
44 45 6.524586 GCACTACAAGAAATATGTCAACTTGC 59.475 38.462 0.00 0.00 40.72 4.01
45 46 7.810658 AGCACTACAAGAAATATGTCAACTTG 58.189 34.615 0.00 0.00 42.11 3.16
46 47 7.148573 CGAGCACTACAAGAAATATGTCAACTT 60.149 37.037 0.00 0.00 32.27 2.66
47 48 6.311445 CGAGCACTACAAGAAATATGTCAACT 59.689 38.462 0.00 0.00 32.27 3.16
48 49 6.090898 ACGAGCACTACAAGAAATATGTCAAC 59.909 38.462 0.00 0.00 32.27 3.18
49 50 6.163476 ACGAGCACTACAAGAAATATGTCAA 58.837 36.000 0.00 0.00 32.27 3.18
50 51 5.720202 ACGAGCACTACAAGAAATATGTCA 58.280 37.500 0.00 0.00 32.27 3.58
51 52 6.531948 AGAACGAGCACTACAAGAAATATGTC 59.468 38.462 0.00 0.00 32.27 3.06
52 53 6.311445 CAGAACGAGCACTACAAGAAATATGT 59.689 38.462 0.00 0.00 34.81 2.29
53 54 6.237942 CCAGAACGAGCACTACAAGAAATATG 60.238 42.308 0.00 0.00 0.00 1.78
54 55 5.812642 CCAGAACGAGCACTACAAGAAATAT 59.187 40.000 0.00 0.00 0.00 1.28
55 56 5.168569 CCAGAACGAGCACTACAAGAAATA 58.831 41.667 0.00 0.00 0.00 1.40
56 57 3.997021 CCAGAACGAGCACTACAAGAAAT 59.003 43.478 0.00 0.00 0.00 2.17
57 58 3.390135 CCAGAACGAGCACTACAAGAAA 58.610 45.455 0.00 0.00 0.00 2.52
58 59 2.866460 GCCAGAACGAGCACTACAAGAA 60.866 50.000 0.00 0.00 0.00 2.52
59 60 1.336887 GCCAGAACGAGCACTACAAGA 60.337 52.381 0.00 0.00 0.00 3.02
60 61 1.071605 GCCAGAACGAGCACTACAAG 58.928 55.000 0.00 0.00 0.00 3.16
61 62 0.666274 CGCCAGAACGAGCACTACAA 60.666 55.000 0.00 0.00 34.06 2.41
62 63 1.080772 CGCCAGAACGAGCACTACA 60.081 57.895 0.00 0.00 34.06 2.74
63 64 1.805945 CCGCCAGAACGAGCACTAC 60.806 63.158 0.00 0.00 34.06 2.73
64 65 2.571757 CCGCCAGAACGAGCACTA 59.428 61.111 0.00 0.00 34.06 2.74
69 70 2.421877 ATATCCGCCGCCAGAACGAG 62.422 60.000 0.00 0.00 34.06 4.18
70 71 2.495409 ATATCCGCCGCCAGAACGA 61.495 57.895 0.00 0.00 34.06 3.85
71 72 2.029073 ATATCCGCCGCCAGAACG 59.971 61.111 0.00 0.00 0.00 3.95
72 73 1.961277 CCATATCCGCCGCCAGAAC 60.961 63.158 0.00 0.00 0.00 3.01
73 74 2.377628 GACCATATCCGCCGCCAGAA 62.378 60.000 0.00 0.00 0.00 3.02
74 75 2.842462 ACCATATCCGCCGCCAGA 60.842 61.111 0.00 0.00 0.00 3.86
75 76 2.357517 GACCATATCCGCCGCCAG 60.358 66.667 0.00 0.00 0.00 4.85
76 77 4.293648 CGACCATATCCGCCGCCA 62.294 66.667 0.00 0.00 0.00 5.69
77 78 3.802418 AACGACCATATCCGCCGCC 62.802 63.158 0.00 0.00 0.00 6.13
78 79 2.279918 AACGACCATATCCGCCGC 60.280 61.111 0.00 0.00 0.00 6.53
79 80 2.014554 CGAACGACCATATCCGCCG 61.015 63.158 0.00 0.00 0.00 6.46
80 81 1.663702 CCGAACGACCATATCCGCC 60.664 63.158 0.00 0.00 0.00 6.13
81 82 0.529119 AACCGAACGACCATATCCGC 60.529 55.000 0.00 0.00 0.00 5.54
82 83 1.205657 CAACCGAACGACCATATCCG 58.794 55.000 0.00 0.00 0.00 4.18
83 84 0.935196 GCAACCGAACGACCATATCC 59.065 55.000 0.00 0.00 0.00 2.59
84 85 0.935196 GGCAACCGAACGACCATATC 59.065 55.000 0.00 0.00 0.00 1.63
85 86 3.074594 GGCAACCGAACGACCATAT 57.925 52.632 0.00 0.00 0.00 1.78
86 87 4.602159 GGCAACCGAACGACCATA 57.398 55.556 0.00 0.00 0.00 2.74
98 99 0.734889 CATCGAGTTCCATGGGCAAC 59.265 55.000 13.02 10.12 0.00 4.17
99 100 0.327924 ACATCGAGTTCCATGGGCAA 59.672 50.000 13.02 0.00 0.00 4.52
100 101 1.199615 TACATCGAGTTCCATGGGCA 58.800 50.000 13.02 0.00 0.00 5.36
101 102 2.325583 TTACATCGAGTTCCATGGGC 57.674 50.000 13.02 5.47 0.00 5.36
102 103 4.342862 AGATTACATCGAGTTCCATGGG 57.657 45.455 13.02 0.00 0.00 4.00
128 129 9.220906 ACTTAGTGGGGATCAACTATTTATGTA 57.779 33.333 0.00 0.00 0.00 2.29
129 130 8.102484 ACTTAGTGGGGATCAACTATTTATGT 57.898 34.615 0.00 0.00 0.00 2.29
130 131 8.432805 AGACTTAGTGGGGATCAACTATTTATG 58.567 37.037 0.00 0.00 0.00 1.90
131 132 8.568617 AGACTTAGTGGGGATCAACTATTTAT 57.431 34.615 0.00 0.00 0.00 1.40
132 133 7.989947 AGACTTAGTGGGGATCAACTATTTA 57.010 36.000 0.00 0.00 0.00 1.40
133 134 6.893020 AGACTTAGTGGGGATCAACTATTT 57.107 37.500 0.00 0.00 0.00 1.40
134 135 7.989947 TTAGACTTAGTGGGGATCAACTATT 57.010 36.000 0.00 0.00 0.00 1.73
135 136 8.568617 AATTAGACTTAGTGGGGATCAACTAT 57.431 34.615 0.00 0.00 0.00 2.12
136 137 7.844779 AGAATTAGACTTAGTGGGGATCAACTA 59.155 37.037 0.00 0.00 0.00 2.24
137 138 6.674419 AGAATTAGACTTAGTGGGGATCAACT 59.326 38.462 0.00 0.00 0.00 3.16
138 139 6.890293 AGAATTAGACTTAGTGGGGATCAAC 58.110 40.000 0.00 0.00 0.00 3.18
139 140 6.903534 AGAGAATTAGACTTAGTGGGGATCAA 59.096 38.462 0.00 0.00 0.00 2.57
140 141 6.444704 AGAGAATTAGACTTAGTGGGGATCA 58.555 40.000 0.00 0.00 0.00 2.92
141 142 6.551601 TGAGAGAATTAGACTTAGTGGGGATC 59.448 42.308 0.00 0.00 0.00 3.36
142 143 6.444704 TGAGAGAATTAGACTTAGTGGGGAT 58.555 40.000 0.00 0.00 0.00 3.85
143 144 5.838955 TGAGAGAATTAGACTTAGTGGGGA 58.161 41.667 0.00 0.00 0.00 4.81
144 145 6.070767 TGTTGAGAGAATTAGACTTAGTGGGG 60.071 42.308 0.00 0.00 0.00 4.96
145 146 6.936279 TGTTGAGAGAATTAGACTTAGTGGG 58.064 40.000 0.00 0.00 0.00 4.61
146 147 7.010923 GCATGTTGAGAGAATTAGACTTAGTGG 59.989 40.741 0.00 0.00 0.00 4.00
147 148 7.547019 TGCATGTTGAGAGAATTAGACTTAGTG 59.453 37.037 0.00 0.00 0.00 2.74
148 149 7.615403 TGCATGTTGAGAGAATTAGACTTAGT 58.385 34.615 0.00 0.00 0.00 2.24
149 150 7.254387 GCTGCATGTTGAGAGAATTAGACTTAG 60.254 40.741 0.00 0.00 0.00 2.18
150 151 6.536582 GCTGCATGTTGAGAGAATTAGACTTA 59.463 38.462 0.00 0.00 0.00 2.24
151 152 5.353678 GCTGCATGTTGAGAGAATTAGACTT 59.646 40.000 0.00 0.00 0.00 3.01
152 153 4.874966 GCTGCATGTTGAGAGAATTAGACT 59.125 41.667 0.00 0.00 0.00 3.24
153 154 4.034975 GGCTGCATGTTGAGAGAATTAGAC 59.965 45.833 0.50 0.00 0.00 2.59
154 155 4.194640 GGCTGCATGTTGAGAGAATTAGA 58.805 43.478 0.50 0.00 0.00 2.10
155 156 3.314635 GGGCTGCATGTTGAGAGAATTAG 59.685 47.826 0.50 0.00 0.00 1.73
156 157 3.054139 AGGGCTGCATGTTGAGAGAATTA 60.054 43.478 0.50 0.00 0.00 1.40
157 158 2.097825 GGGCTGCATGTTGAGAGAATT 58.902 47.619 0.50 0.00 0.00 2.17
158 159 1.284198 AGGGCTGCATGTTGAGAGAAT 59.716 47.619 0.50 0.00 0.00 2.40
159 160 0.694771 AGGGCTGCATGTTGAGAGAA 59.305 50.000 0.50 0.00 0.00 2.87
160 161 0.251354 GAGGGCTGCATGTTGAGAGA 59.749 55.000 0.50 0.00 0.00 3.10
161 162 0.747283 GGAGGGCTGCATGTTGAGAG 60.747 60.000 0.50 0.00 0.00 3.20
162 163 1.300963 GGAGGGCTGCATGTTGAGA 59.699 57.895 0.50 0.00 0.00 3.27
163 164 1.001764 TGGAGGGCTGCATGTTGAG 60.002 57.895 0.50 0.00 0.00 3.02
164 165 1.303561 GTGGAGGGCTGCATGTTGA 60.304 57.895 0.50 0.00 32.40 3.18
165 166 0.968901 ATGTGGAGGGCTGCATGTTG 60.969 55.000 0.50 0.00 32.40 3.33
166 167 0.682209 GATGTGGAGGGCTGCATGTT 60.682 55.000 0.50 0.00 32.40 2.71
167 168 1.077212 GATGTGGAGGGCTGCATGT 60.077 57.895 0.50 0.00 32.40 3.21
168 169 0.467474 ATGATGTGGAGGGCTGCATG 60.467 55.000 0.50 0.00 32.40 4.06
169 170 0.178998 GATGATGTGGAGGGCTGCAT 60.179 55.000 0.50 0.00 32.40 3.96
170 171 1.225426 GATGATGTGGAGGGCTGCA 59.775 57.895 0.50 0.00 0.00 4.41
171 172 0.394762 TTGATGATGTGGAGGGCTGC 60.395 55.000 0.00 0.00 0.00 5.25
172 173 2.133281 TTTGATGATGTGGAGGGCTG 57.867 50.000 0.00 0.00 0.00 4.85
173 174 4.105217 TCATATTTGATGATGTGGAGGGCT 59.895 41.667 0.00 0.00 0.00 5.19
174 175 4.217118 GTCATATTTGATGATGTGGAGGGC 59.783 45.833 0.00 0.00 33.56 5.19
175 176 5.240183 GTGTCATATTTGATGATGTGGAGGG 59.760 44.000 0.00 0.00 33.56 4.30
176 177 5.049886 CGTGTCATATTTGATGATGTGGAGG 60.050 44.000 0.00 0.00 33.56 4.30
177 178 5.525012 ACGTGTCATATTTGATGATGTGGAG 59.475 40.000 0.00 0.00 33.56 3.86
178 179 5.427378 ACGTGTCATATTTGATGATGTGGA 58.573 37.500 0.00 0.00 33.56 4.02
179 180 5.294060 TGACGTGTCATATTTGATGATGTGG 59.706 40.000 0.00 0.00 34.14 4.17
180 181 6.348621 TGACGTGTCATATTTGATGATGTG 57.651 37.500 0.00 0.00 34.14 3.21
194 195 2.760092 TCTGATGGATGATGACGTGTCA 59.240 45.455 4.99 4.99 44.59 3.58
195 196 3.443099 TCTGATGGATGATGACGTGTC 57.557 47.619 0.00 0.00 0.00 3.67
196 197 3.196469 AGTTCTGATGGATGATGACGTGT 59.804 43.478 0.00 0.00 0.00 4.49
197 198 3.790091 AGTTCTGATGGATGATGACGTG 58.210 45.455 0.00 0.00 0.00 4.49
198 199 5.798125 ATAGTTCTGATGGATGATGACGT 57.202 39.130 0.00 0.00 0.00 4.34
199 200 7.011763 ACAAAATAGTTCTGATGGATGATGACG 59.988 37.037 0.00 0.00 0.00 4.35
200 201 8.218338 ACAAAATAGTTCTGATGGATGATGAC 57.782 34.615 0.00 0.00 0.00 3.06
201 202 9.551734 CTACAAAATAGTTCTGATGGATGATGA 57.448 33.333 0.00 0.00 0.00 2.92
202 203 8.781196 CCTACAAAATAGTTCTGATGGATGATG 58.219 37.037 0.00 0.00 0.00 3.07
203 204 8.717717 TCCTACAAAATAGTTCTGATGGATGAT 58.282 33.333 0.00 0.00 0.00 2.45
204 205 7.987458 GTCCTACAAAATAGTTCTGATGGATGA 59.013 37.037 0.00 0.00 0.00 2.92
205 206 7.770433 TGTCCTACAAAATAGTTCTGATGGATG 59.230 37.037 0.00 0.00 0.00 3.51
206 207 7.861629 TGTCCTACAAAATAGTTCTGATGGAT 58.138 34.615 0.00 0.00 0.00 3.41
207 208 7.252612 TGTCCTACAAAATAGTTCTGATGGA 57.747 36.000 0.00 0.00 0.00 3.41
208 209 7.467811 GCATGTCCTACAAAATAGTTCTGATGG 60.468 40.741 0.00 0.00 0.00 3.51
209 210 7.066163 TGCATGTCCTACAAAATAGTTCTGATG 59.934 37.037 0.00 0.00 0.00 3.07
210 211 7.112122 TGCATGTCCTACAAAATAGTTCTGAT 58.888 34.615 0.00 0.00 0.00 2.90
211 212 6.472016 TGCATGTCCTACAAAATAGTTCTGA 58.528 36.000 0.00 0.00 0.00 3.27
212 213 6.741992 TGCATGTCCTACAAAATAGTTCTG 57.258 37.500 0.00 0.00 0.00 3.02
213 214 7.224753 CGTATGCATGTCCTACAAAATAGTTCT 59.775 37.037 10.16 0.00 0.00 3.01
214 215 7.345192 CGTATGCATGTCCTACAAAATAGTTC 58.655 38.462 10.16 0.00 0.00 3.01
215 216 6.238374 GCGTATGCATGTCCTACAAAATAGTT 60.238 38.462 10.16 0.00 42.15 2.24
216 217 5.236478 GCGTATGCATGTCCTACAAAATAGT 59.764 40.000 10.16 0.00 42.15 2.12
217 218 5.334105 GGCGTATGCATGTCCTACAAAATAG 60.334 44.000 10.16 0.00 45.35 1.73
218 219 4.513692 GGCGTATGCATGTCCTACAAAATA 59.486 41.667 10.16 0.00 45.35 1.40
219 220 3.315191 GGCGTATGCATGTCCTACAAAAT 59.685 43.478 10.16 0.00 45.35 1.82
220 221 2.680841 GGCGTATGCATGTCCTACAAAA 59.319 45.455 10.16 0.00 45.35 2.44
221 222 2.285083 GGCGTATGCATGTCCTACAAA 58.715 47.619 10.16 0.00 45.35 2.83
222 223 1.208293 TGGCGTATGCATGTCCTACAA 59.792 47.619 10.16 0.00 45.35 2.41
223 224 0.827368 TGGCGTATGCATGTCCTACA 59.173 50.000 10.16 0.00 45.35 2.74
224 225 1.948104 TTGGCGTATGCATGTCCTAC 58.052 50.000 10.16 0.00 45.35 3.18
225 226 2.928801 ATTGGCGTATGCATGTCCTA 57.071 45.000 10.16 4.98 45.35 2.94
226 227 2.057137 AATTGGCGTATGCATGTCCT 57.943 45.000 10.16 0.00 45.35 3.85
227 228 2.869233 AAATTGGCGTATGCATGTCC 57.131 45.000 10.16 8.05 45.35 4.02
228 229 5.748152 ACAATTAAATTGGCGTATGCATGTC 59.252 36.000 10.16 1.37 44.42 3.06
229 230 5.659463 ACAATTAAATTGGCGTATGCATGT 58.341 33.333 10.16 0.00 44.42 3.21
230 231 6.292274 GGAACAATTAAATTGGCGTATGCATG 60.292 38.462 10.16 0.00 44.42 4.06
231 232 5.752955 GGAACAATTAAATTGGCGTATGCAT 59.247 36.000 9.59 3.79 44.42 3.96
232 233 5.105752 GGAACAATTAAATTGGCGTATGCA 58.894 37.500 9.59 0.00 44.42 3.96
233 234 5.105752 TGGAACAATTAAATTGGCGTATGC 58.894 37.500 0.00 0.00 44.42 3.14
251 252 4.843728 TGTTGGACTATTGGAGATGGAAC 58.156 43.478 0.00 0.00 0.00 3.62
252 253 5.715439 ATGTTGGACTATTGGAGATGGAA 57.285 39.130 0.00 0.00 0.00 3.53
253 254 5.665360 TGTATGTTGGACTATTGGAGATGGA 59.335 40.000 0.00 0.00 0.00 3.41
254 255 5.928976 TGTATGTTGGACTATTGGAGATGG 58.071 41.667 0.00 0.00 0.00 3.51
255 256 6.072838 GCATGTATGTTGGACTATTGGAGATG 60.073 42.308 0.00 0.00 0.00 2.90
256 257 6.000219 GCATGTATGTTGGACTATTGGAGAT 59.000 40.000 0.00 0.00 0.00 2.75
257 258 5.104569 TGCATGTATGTTGGACTATTGGAGA 60.105 40.000 0.00 0.00 0.00 3.71
258 259 5.125356 TGCATGTATGTTGGACTATTGGAG 58.875 41.667 0.00 0.00 0.00 3.86
259 260 5.109500 TGCATGTATGTTGGACTATTGGA 57.891 39.130 0.00 0.00 0.00 3.53
260 261 6.072508 GGTATGCATGTATGTTGGACTATTGG 60.073 42.308 10.16 0.00 0.00 3.16
261 262 6.072508 GGGTATGCATGTATGTTGGACTATTG 60.073 42.308 10.16 0.00 0.00 1.90
262 263 6.003950 GGGTATGCATGTATGTTGGACTATT 58.996 40.000 10.16 0.00 0.00 1.73
263 264 5.310594 AGGGTATGCATGTATGTTGGACTAT 59.689 40.000 10.16 0.00 0.00 2.12
264 265 4.658435 AGGGTATGCATGTATGTTGGACTA 59.342 41.667 10.16 0.00 0.00 2.59
265 266 3.459598 AGGGTATGCATGTATGTTGGACT 59.540 43.478 10.16 0.00 0.00 3.85
266 267 3.820557 AGGGTATGCATGTATGTTGGAC 58.179 45.455 10.16 0.00 0.00 4.02
267 268 4.518278 AAGGGTATGCATGTATGTTGGA 57.482 40.909 10.16 0.00 0.00 3.53
268 269 4.402155 ACAAAGGGTATGCATGTATGTTGG 59.598 41.667 10.16 0.00 0.00 3.77
269 270 5.581126 ACAAAGGGTATGCATGTATGTTG 57.419 39.130 10.16 10.56 0.00 3.33
270 271 6.603940 AAACAAAGGGTATGCATGTATGTT 57.396 33.333 10.16 9.01 0.00 2.71
271 272 6.661377 TGTAAACAAAGGGTATGCATGTATGT 59.339 34.615 10.16 3.20 0.00 2.29
272 273 7.094508 TGTAAACAAAGGGTATGCATGTATG 57.905 36.000 10.16 2.57 0.00 2.39
273 274 7.896383 ATGTAAACAAAGGGTATGCATGTAT 57.104 32.000 10.16 0.82 0.00 2.29
274 275 8.988546 ATATGTAAACAAAGGGTATGCATGTA 57.011 30.769 10.16 0.00 0.00 2.29
275 276 7.896383 ATATGTAAACAAAGGGTATGCATGT 57.104 32.000 10.16 0.00 0.00 3.21
319 320 8.587608 TGAATGAAATGACCTAAATTGAAAGCT 58.412 29.630 0.00 0.00 0.00 3.74
320 321 8.761575 TGAATGAAATGACCTAAATTGAAAGC 57.238 30.769 0.00 0.00 0.00 3.51
353 354 9.691362 GGAGCTTAAAGATTAATTTTGAACACA 57.309 29.630 0.00 0.00 0.00 3.72
354 355 9.140286 GGGAGCTTAAAGATTAATTTTGAACAC 57.860 33.333 0.00 0.00 0.00 3.32
355 356 8.026607 CGGGAGCTTAAAGATTAATTTTGAACA 58.973 33.333 0.00 0.00 0.00 3.18
356 357 8.394667 CGGGAGCTTAAAGATTAATTTTGAAC 57.605 34.615 0.00 0.00 0.00 3.18
384 385 4.829518 GATTTCCCCGCGCGTTGC 62.830 66.667 29.95 6.67 41.47 4.17
385 386 3.427425 TGATTTCCCCGCGCGTTG 61.427 61.111 29.95 19.04 0.00 4.10
386 387 3.428282 GTGATTTCCCCGCGCGTT 61.428 61.111 29.95 5.66 0.00 4.84
388 389 3.726595 TAGGTGATTTCCCCGCGCG 62.727 63.158 25.67 25.67 0.00 6.86
389 390 1.887707 CTAGGTGATTTCCCCGCGC 60.888 63.158 0.00 0.00 0.00 6.86
390 391 0.107848 AACTAGGTGATTTCCCCGCG 60.108 55.000 0.00 0.00 0.00 6.46
391 392 2.124277 AAACTAGGTGATTTCCCCGC 57.876 50.000 0.00 0.00 0.00 6.13
392 393 6.769134 AATAAAAACTAGGTGATTTCCCCG 57.231 37.500 0.00 0.00 0.00 5.73
393 394 9.197306 ACATAATAAAAACTAGGTGATTTCCCC 57.803 33.333 0.00 0.00 0.00 4.81
399 400 8.977412 CCCCAAACATAATAAAAACTAGGTGAT 58.023 33.333 0.00 0.00 0.00 3.06
400 401 7.093684 GCCCCAAACATAATAAAAACTAGGTGA 60.094 37.037 0.00 0.00 0.00 4.02
401 402 7.039270 GCCCCAAACATAATAAAAACTAGGTG 58.961 38.462 0.00 0.00 0.00 4.00
402 403 6.127563 CGCCCCAAACATAATAAAAACTAGGT 60.128 38.462 0.00 0.00 0.00 3.08
403 404 6.270064 CGCCCCAAACATAATAAAAACTAGG 58.730 40.000 0.00 0.00 0.00 3.02
404 405 5.746721 GCGCCCCAAACATAATAAAAACTAG 59.253 40.000 0.00 0.00 0.00 2.57
405 406 5.419471 AGCGCCCCAAACATAATAAAAACTA 59.581 36.000 2.29 0.00 0.00 2.24
406 407 4.221924 AGCGCCCCAAACATAATAAAAACT 59.778 37.500 2.29 0.00 0.00 2.66
407 408 4.500127 AGCGCCCCAAACATAATAAAAAC 58.500 39.130 2.29 0.00 0.00 2.43
408 409 4.810191 AGCGCCCCAAACATAATAAAAA 57.190 36.364 2.29 0.00 0.00 1.94
409 410 4.810191 AAGCGCCCCAAACATAATAAAA 57.190 36.364 2.29 0.00 0.00 1.52
410 411 4.499183 CAAAGCGCCCCAAACATAATAAA 58.501 39.130 2.29 0.00 0.00 1.40
411 412 3.677424 GCAAAGCGCCCCAAACATAATAA 60.677 43.478 2.29 0.00 32.94 1.40
412 413 2.159170 GCAAAGCGCCCCAAACATAATA 60.159 45.455 2.29 0.00 32.94 0.98
413 414 1.405391 GCAAAGCGCCCCAAACATAAT 60.405 47.619 2.29 0.00 32.94 1.28
414 415 0.037790 GCAAAGCGCCCCAAACATAA 60.038 50.000 2.29 0.00 32.94 1.90
415 416 1.181741 TGCAAAGCGCCCCAAACATA 61.182 50.000 2.29 0.00 41.33 2.29
416 417 2.343387 GCAAAGCGCCCCAAACAT 59.657 55.556 2.29 0.00 32.94 2.71
417 418 3.150335 TGCAAAGCGCCCCAAACA 61.150 55.556 2.29 0.00 41.33 2.83
418 419 2.642996 AAGTGCAAAGCGCCCCAAAC 62.643 55.000 2.29 0.00 40.23 2.93
419 420 2.362329 GAAGTGCAAAGCGCCCCAAA 62.362 55.000 2.29 0.00 40.23 3.28
420 421 2.837291 AAGTGCAAAGCGCCCCAA 60.837 55.556 2.29 0.00 40.23 4.12
421 422 3.294493 GAAGTGCAAAGCGCCCCA 61.294 61.111 2.29 0.00 40.23 4.96
422 423 4.056125 GGAAGTGCAAAGCGCCCC 62.056 66.667 2.29 0.00 40.23 5.80
423 424 4.404654 CGGAAGTGCAAAGCGCCC 62.405 66.667 2.29 0.00 40.23 6.13
424 425 4.404654 CCGGAAGTGCAAAGCGCC 62.405 66.667 2.29 0.00 40.23 6.53
425 426 3.660111 ACCGGAAGTGCAAAGCGC 61.660 61.111 9.46 0.00 42.89 5.92
426 427 1.781025 TTCACCGGAAGTGCAAAGCG 61.781 55.000 9.46 0.00 46.81 4.68
427 428 0.598065 ATTCACCGGAAGTGCAAAGC 59.402 50.000 9.46 0.00 46.81 3.51
428 429 2.154462 AGATTCACCGGAAGTGCAAAG 58.846 47.619 9.46 0.00 46.81 2.77
429 430 2.270352 AGATTCACCGGAAGTGCAAA 57.730 45.000 9.46 0.00 46.81 3.68
430 431 2.270352 AAGATTCACCGGAAGTGCAA 57.730 45.000 9.46 0.00 46.81 4.08
431 432 2.270352 AAAGATTCACCGGAAGTGCA 57.730 45.000 9.46 0.00 46.81 4.57
432 433 6.619801 ATTATAAAGATTCACCGGAAGTGC 57.380 37.500 9.46 0.00 46.81 4.40
487 488 9.495572 CTGAGATTTTTCTAGGTCAAAGTTACT 57.504 33.333 0.00 0.00 0.00 2.24
488 489 9.490379 TCTGAGATTTTTCTAGGTCAAAGTTAC 57.510 33.333 0.00 0.00 0.00 2.50
490 491 8.841300 GTTCTGAGATTTTTCTAGGTCAAAGTT 58.159 33.333 0.00 0.00 0.00 2.66
491 492 8.214364 AGTTCTGAGATTTTTCTAGGTCAAAGT 58.786 33.333 0.00 0.00 0.00 2.66
492 493 8.614469 AGTTCTGAGATTTTTCTAGGTCAAAG 57.386 34.615 0.00 0.00 0.00 2.77
493 494 8.980481 AAGTTCTGAGATTTTTCTAGGTCAAA 57.020 30.769 0.00 0.00 0.00 2.69
494 495 8.980481 AAAGTTCTGAGATTTTTCTAGGTCAA 57.020 30.769 0.00 0.00 0.00 3.18
523 524 1.732117 TACTCCCTCCGTCCCAAAAA 58.268 50.000 0.00 0.00 0.00 1.94
524 525 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
525 526 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
526 527 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
527 528 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
548 549 7.382898 AGCAAAACACTCCTGAAAAGTAAAAA 58.617 30.769 0.00 0.00 0.00 1.94
549 550 6.930731 AGCAAAACACTCCTGAAAAGTAAAA 58.069 32.000 0.00 0.00 0.00 1.52
550 551 6.524101 AGCAAAACACTCCTGAAAAGTAAA 57.476 33.333 0.00 0.00 0.00 2.01
551 552 6.826741 AGTAGCAAAACACTCCTGAAAAGTAA 59.173 34.615 0.00 0.00 0.00 2.24
552 553 6.354130 AGTAGCAAAACACTCCTGAAAAGTA 58.646 36.000 0.00 0.00 0.00 2.24
553 554 5.193679 AGTAGCAAAACACTCCTGAAAAGT 58.806 37.500 0.00 0.00 0.00 2.66
554 555 5.757850 AGTAGCAAAACACTCCTGAAAAG 57.242 39.130 0.00 0.00 0.00 2.27
555 556 7.817418 ATTAGTAGCAAAACACTCCTGAAAA 57.183 32.000 0.00 0.00 0.00 2.29
556 557 8.911918 TTATTAGTAGCAAAACACTCCTGAAA 57.088 30.769 0.00 0.00 0.00 2.69
557 558 8.372459 TCTTATTAGTAGCAAAACACTCCTGAA 58.628 33.333 0.00 0.00 0.00 3.02
558 559 7.903145 TCTTATTAGTAGCAAAACACTCCTGA 58.097 34.615 0.00 0.00 0.00 3.86
559 560 8.547967 TTCTTATTAGTAGCAAAACACTCCTG 57.452 34.615 0.00 0.00 0.00 3.86
560 561 9.740710 ATTTCTTATTAGTAGCAAAACACTCCT 57.259 29.630 0.00 0.00 0.00 3.69
584 585 6.446781 TCGGACGTAGAGTGATCTAAAATT 57.553 37.500 0.00 0.00 0.00 1.82
585 586 6.264088 GTTCGGACGTAGAGTGATCTAAAAT 58.736 40.000 0.00 0.00 0.00 1.82
656 662 3.351609 ACGTGAGTGCTGGTAGGTA 57.648 52.632 0.00 0.00 46.97 3.08
745 762 1.875813 GAGATGAGAGCGTGGCACG 60.876 63.158 33.96 33.96 45.88 5.34
772 798 2.872858 GCGTGTCTCTTCTTCCTTTTGT 59.127 45.455 0.00 0.00 0.00 2.83
830 856 0.958091 TTTTAGCCGTTGCACTGCAT 59.042 45.000 4.10 0.00 38.76 3.96
831 857 0.958091 ATTTTAGCCGTTGCACTGCA 59.042 45.000 0.00 0.00 41.13 4.41
832 858 1.720852 CAATTTTAGCCGTTGCACTGC 59.279 47.619 0.00 0.00 41.13 4.40
834 860 1.336795 GCCAATTTTAGCCGTTGCACT 60.337 47.619 0.00 0.00 41.13 4.40
1346 1383 2.104253 CGGTTGATCGGGGAAACGG 61.104 63.158 0.00 0.00 0.00 4.44
1365 1402 1.172812 AGGCAACAAGAAAGGACGGC 61.173 55.000 0.00 0.00 41.41 5.68
1466 1503 2.075338 GGAAAAGAGAGCAGAGCACTG 58.925 52.381 6.80 6.80 45.91 3.66
1469 1506 2.936919 TTGGAAAAGAGAGCAGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
1470 1507 3.316308 TGTTTTGGAAAAGAGAGCAGAGC 59.684 43.478 0.00 0.00 0.00 4.09
1471 1508 5.009410 ACATGTTTTGGAAAAGAGAGCAGAG 59.991 40.000 0.00 0.00 0.00 3.35
1472 1509 4.889409 ACATGTTTTGGAAAAGAGAGCAGA 59.111 37.500 0.00 0.00 0.00 4.26
1473 1510 5.192327 ACATGTTTTGGAAAAGAGAGCAG 57.808 39.130 0.00 0.00 0.00 4.24
1501 1538 0.968405 GCTGGCCAACCTGAAAATGA 59.032 50.000 7.01 0.00 37.06 2.57
1502 1539 0.680618 TGCTGGCCAACCTGAAAATG 59.319 50.000 7.01 0.00 37.06 2.32
1612 1653 3.436496 GCCAACGTAGACAGATGTAGAC 58.564 50.000 0.00 0.00 0.00 2.59
1613 1654 2.426024 GGCCAACGTAGACAGATGTAGA 59.574 50.000 0.00 0.00 0.00 2.59
1614 1655 2.165641 TGGCCAACGTAGACAGATGTAG 59.834 50.000 0.61 0.00 0.00 2.74
1615 1656 2.165641 CTGGCCAACGTAGACAGATGTA 59.834 50.000 14.73 0.00 0.00 2.29
1616 1657 0.973632 TGGCCAACGTAGACAGATGT 59.026 50.000 0.61 0.00 0.00 3.06
1617 1658 1.645034 CTGGCCAACGTAGACAGATG 58.355 55.000 14.73 0.00 0.00 2.90
1618 1659 0.108138 GCTGGCCAACGTAGACAGAT 60.108 55.000 22.18 0.00 0.00 2.90
1620 1661 0.602638 TTGCTGGCCAACGTAGACAG 60.603 55.000 15.39 15.39 0.00 3.51
1621 1662 0.179043 TTTGCTGGCCAACGTAGACA 60.179 50.000 7.01 0.00 31.97 3.41
1623 1664 1.234615 GCTTTGCTGGCCAACGTAGA 61.235 55.000 7.01 0.00 31.97 2.59
1624 1665 1.210155 GCTTTGCTGGCCAACGTAG 59.790 57.895 7.01 4.86 31.97 3.51
1626 1667 1.747325 AATGCTTTGCTGGCCAACGT 61.747 50.000 7.01 0.00 31.97 3.99
1627 1668 0.243365 TAATGCTTTGCTGGCCAACG 59.757 50.000 7.01 0.00 31.97 4.10
1629 1670 1.001860 GGTTAATGCTTTGCTGGCCAA 59.998 47.619 7.01 0.00 0.00 4.52
1630 1671 0.607620 GGTTAATGCTTTGCTGGCCA 59.392 50.000 4.71 4.71 0.00 5.36
1631 1672 0.607620 TGGTTAATGCTTTGCTGGCC 59.392 50.000 0.00 0.00 0.00 5.36
1632 1673 2.000429 CTGGTTAATGCTTTGCTGGC 58.000 50.000 0.00 0.00 0.00 4.85
1633 1674 1.404583 GGCTGGTTAATGCTTTGCTGG 60.405 52.381 0.00 0.00 0.00 4.85
1634 1675 1.273048 TGGCTGGTTAATGCTTTGCTG 59.727 47.619 0.00 0.00 0.00 4.41
1635 1676 1.273327 GTGGCTGGTTAATGCTTTGCT 59.727 47.619 0.00 0.00 0.00 3.91
1636 1677 1.000731 TGTGGCTGGTTAATGCTTTGC 59.999 47.619 0.00 0.00 0.00 3.68
1637 1678 3.598019 ATGTGGCTGGTTAATGCTTTG 57.402 42.857 0.00 0.00 0.00 2.77
1638 1679 3.324556 ACAATGTGGCTGGTTAATGCTTT 59.675 39.130 0.00 0.00 0.00 3.51
1639 1680 2.899256 ACAATGTGGCTGGTTAATGCTT 59.101 40.909 0.00 0.00 0.00 3.91
1640 1681 2.528564 ACAATGTGGCTGGTTAATGCT 58.471 42.857 0.00 0.00 0.00 3.79
1641 1682 3.317603 AACAATGTGGCTGGTTAATGC 57.682 42.857 0.00 0.00 0.00 3.56
1642 1683 4.880759 TGAAACAATGTGGCTGGTTAATG 58.119 39.130 0.00 0.00 0.00 1.90
1643 1684 5.481473 AGATGAAACAATGTGGCTGGTTAAT 59.519 36.000 0.00 0.00 0.00 1.40
1644 1685 4.832266 AGATGAAACAATGTGGCTGGTTAA 59.168 37.500 0.00 0.00 0.00 2.01
1645 1686 4.406456 AGATGAAACAATGTGGCTGGTTA 58.594 39.130 0.00 0.00 0.00 2.85
1646 1687 3.233507 AGATGAAACAATGTGGCTGGTT 58.766 40.909 0.00 0.00 0.00 3.67
1647 1688 2.821969 GAGATGAAACAATGTGGCTGGT 59.178 45.455 0.00 0.00 0.00 4.00
1648 1689 3.087031 AGAGATGAAACAATGTGGCTGG 58.913 45.455 0.00 0.00 0.00 4.85
1649 1690 3.754850 TCAGAGATGAAACAATGTGGCTG 59.245 43.478 0.00 0.00 0.00 4.85
1650 1691 4.025040 TCAGAGATGAAACAATGTGGCT 57.975 40.909 0.00 0.00 0.00 4.75
1651 1692 4.771590 TTCAGAGATGAAACAATGTGGC 57.228 40.909 0.00 0.00 0.00 5.01
1652 1693 8.447924 AGATATTCAGAGATGAAACAATGTGG 57.552 34.615 0.00 0.00 0.00 4.17
1656 1697 9.282569 GGCTTAGATATTCAGAGATGAAACAAT 57.717 33.333 0.00 0.00 0.00 2.71
1657 1698 7.716998 GGGCTTAGATATTCAGAGATGAAACAA 59.283 37.037 0.00 0.00 0.00 2.83
1658 1699 7.147497 TGGGCTTAGATATTCAGAGATGAAACA 60.147 37.037 0.00 0.00 0.00 2.83
1659 1700 7.220030 TGGGCTTAGATATTCAGAGATGAAAC 58.780 38.462 0.00 0.00 0.00 2.78
1660 1701 7.290948 TCTGGGCTTAGATATTCAGAGATGAAA 59.709 37.037 0.00 0.00 0.00 2.69
1661 1702 6.784473 TCTGGGCTTAGATATTCAGAGATGAA 59.216 38.462 0.00 0.00 0.00 2.57
1662 1703 6.318112 TCTGGGCTTAGATATTCAGAGATGA 58.682 40.000 0.00 0.00 0.00 2.92
1663 1704 6.602410 TCTGGGCTTAGATATTCAGAGATG 57.398 41.667 0.00 0.00 0.00 2.90
1779 1820 0.398318 GCTCCTTGGTGAGTCCTTGT 59.602 55.000 0.00 0.00 37.07 3.16
1818 1859 4.038042 TCGAAGTTGTTGTCAGACATCTCT 59.962 41.667 3.45 4.43 31.13 3.10
1851 1892 8.781067 TTTATTACATGTCAAAGAATATGCGC 57.219 30.769 0.00 0.00 0.00 6.09
2043 2088 3.887716 CCCTGAAATTTCATAGAGGCTGG 59.112 47.826 20.76 14.86 36.46 4.85
2044 2089 4.530875 ACCCTGAAATTTCATAGAGGCTG 58.469 43.478 20.76 9.39 36.46 4.85
2045 2090 4.870021 ACCCTGAAATTTCATAGAGGCT 57.130 40.909 20.76 4.03 36.46 4.58
2046 2091 5.921962 AAACCCTGAAATTTCATAGAGGC 57.078 39.130 20.76 0.00 36.46 4.70
2047 2092 7.466746 TGAAAACCCTGAAATTTCATAGAGG 57.533 36.000 20.76 19.17 37.95 3.69
2101 2146 4.056125 GCAAGCTTGTTCGCCCCC 62.056 66.667 26.55 4.56 0.00 5.40
2164 2209 2.191641 GCATCAGGGTCCAGCTCC 59.808 66.667 0.00 0.00 0.00 4.70
2188 2233 4.701651 TCATTTCTTGGCACCTCAATGTAG 59.298 41.667 0.00 0.00 0.00 2.74
2218 2263 2.026542 TGGTGCTGCATCAGAAGAAGAT 60.027 45.455 12.35 0.00 32.44 2.40
2548 2593 0.389817 TGGCGATGCAGACACAGTAC 60.390 55.000 0.00 0.00 0.00 2.73
2635 2680 2.201022 AGTCGACCGGAGTGCTGTT 61.201 57.895 9.46 0.00 0.00 3.16
2647 2692 3.474034 GCGCTGAGTGCAGTCGAC 61.474 66.667 13.89 7.70 44.17 4.20
2766 2812 0.447406 GCGTACTGTGCATTGCATGA 59.553 50.000 15.49 3.93 41.91 3.07
3080 3126 4.982701 AAGCCAGCCAGGTGGTGC 62.983 66.667 16.71 4.09 41.21 5.01
3410 3456 9.959721 AATGTATACTGAGGAAACTTGTATGTT 57.040 29.630 4.17 0.00 44.43 2.71
3437 3483 7.715249 AGTTCTCTTGTGATACTTGCACTTTAA 59.285 33.333 0.00 0.00 37.18 1.52
3461 3507 9.453572 CATAGAACCATGCATAATATTACCAGT 57.546 33.333 0.00 0.00 0.00 4.00
3470 3516 7.210718 CATGACACATAGAACCATGCATAAT 57.789 36.000 0.00 0.00 0.00 1.28
3471 3517 6.622833 CATGACACATAGAACCATGCATAA 57.377 37.500 0.00 0.00 0.00 1.90
3476 3522 3.314357 CCTGCATGACACATAGAACCATG 59.686 47.826 0.00 0.00 38.04 3.66
3599 3645 2.432444 TGGTACCATTCAAAAGGCGAG 58.568 47.619 11.60 0.00 0.00 5.03
4157 4206 3.106827 ACCAATTCCAAGGCCAATAAGG 58.893 45.455 5.01 4.57 41.84 2.69
4302 4351 2.275134 TTGCTGCTCCTGTTGAATCA 57.725 45.000 0.00 0.00 0.00 2.57
4691 4753 1.595058 GGAGGGAGAAGGGAGGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
4706 4769 5.710099 TCTTATTGCAGTTAACAAAGGGAGG 59.290 40.000 8.61 0.00 0.00 4.30
5106 5175 0.317479 GCTACCCGATGCTACCGAAT 59.683 55.000 0.00 0.00 0.00 3.34
5138 5207 4.792804 GCTCCCTCTGGCACCTGC 62.793 72.222 0.00 0.00 41.14 4.85
5168 5237 6.904463 TCACTCCATGTAGTTTGTACACTA 57.096 37.500 0.00 0.00 0.00 2.74
5169 5238 5.801531 TCACTCCATGTAGTTTGTACACT 57.198 39.130 0.00 0.00 0.00 3.55
5182 5251 3.486375 CGCTACATGCTTTTCACTCCATG 60.486 47.826 0.00 0.00 40.54 3.66
5196 5265 5.117745 CAGCAGCTATAACTAACGCTACATG 59.882 44.000 0.00 0.00 0.00 3.21
5201 5270 2.474816 GCAGCAGCTATAACTAACGCT 58.525 47.619 0.00 0.00 37.91 5.07
5223 5292 4.235372 CTTTCCTCCCCCTATCTATGTGT 58.765 47.826 0.00 0.00 0.00 3.72
5236 5305 8.422577 AAATATAAATACATGGCTTTCCTCCC 57.577 34.615 0.00 0.00 0.00 4.30
5268 5338 8.709386 TTATTCTAAGAAGCAATCTCACTGAC 57.291 34.615 0.00 0.00 37.42 3.51
5278 5348 8.950210 CAAGGTCTGAATTATTCTAAGAAGCAA 58.050 33.333 6.50 0.00 0.00 3.91
5311 5382 3.571828 TCAATTTTGAACCGAGCCAATCA 59.428 39.130 0.00 0.00 33.55 2.57
5340 5411 7.727331 TTAATTTTCAGCCAATCCAAACTTG 57.273 32.000 0.00 0.00 0.00 3.16
5341 5412 7.992608 ACTTTAATTTTCAGCCAATCCAAACTT 59.007 29.630 0.00 0.00 0.00 2.66
5356 5428 9.860898 ATGAGTAAATGGCTCACTTTAATTTTC 57.139 29.630 0.00 0.00 44.52 2.29
5363 5435 7.054491 ACAAAATGAGTAAATGGCTCACTTT 57.946 32.000 0.00 0.00 44.52 2.66
5366 5438 6.215845 ACAACAAAATGAGTAAATGGCTCAC 58.784 36.000 0.00 0.00 44.52 3.51
5390 5462 5.353938 CGATTCGGAGGGTAATCTTTGTTA 58.646 41.667 0.00 0.00 31.29 2.41
5415 5487 9.559958 CACAATCTTTTTATCAAGCTAACGAAT 57.440 29.630 0.00 0.00 0.00 3.34
5435 5507 6.567891 GCTCCTACTTGGTTTACAACACAATC 60.568 42.308 0.00 0.00 34.76 2.67
5484 5558 4.618489 GGAGCATCGTTCACAATTGAAAAG 59.382 41.667 13.59 8.44 43.52 2.27
5574 5649 6.418226 GTCTGTATGTAGTAGTATGTGCTTGC 59.582 42.308 0.00 0.00 0.00 4.01
5820 5895 0.109272 GTCAGATCACGGTCGCTTCA 60.109 55.000 0.00 0.00 0.00 3.02
5830 5905 1.272781 CGGCTTTCTCGTCAGATCAC 58.727 55.000 0.00 0.00 0.00 3.06
5831 5906 0.173481 CCGGCTTTCTCGTCAGATCA 59.827 55.000 0.00 0.00 0.00 2.92
5885 5962 2.959707 ACAGCTAGTGTCCCTGCTATAC 59.040 50.000 0.00 0.00 31.90 1.47
5886 5963 3.314307 ACAGCTAGTGTCCCTGCTATA 57.686 47.619 0.00 0.00 31.90 1.31
5890 5967 1.160137 CAAACAGCTAGTGTCCCTGC 58.840 55.000 0.00 0.00 39.03 4.85
5923 6000 1.600916 GGTTCACTGGCCTGTCCAC 60.601 63.158 13.09 11.74 40.72 4.02
5961 6051 4.587211 ATGCATACAAAAATTGCTTGCG 57.413 36.364 0.00 0.00 41.83 4.85
6031 6121 2.518834 TCCTAGGACCCAAACCCAAAAA 59.481 45.455 7.62 0.00 0.00 1.94
6033 6123 1.426215 GTCCTAGGACCCAAACCCAAA 59.574 52.381 28.87 0.00 39.08 3.28
6034 6124 1.069775 GTCCTAGGACCCAAACCCAA 58.930 55.000 28.87 0.00 39.08 4.12
6035 6125 1.196104 CGTCCTAGGACCCAAACCCA 61.196 60.000 31.78 0.00 41.76 4.51
6036 6126 1.600638 CGTCCTAGGACCCAAACCC 59.399 63.158 31.78 8.84 41.76 4.11
6037 6127 1.078637 GCGTCCTAGGACCCAAACC 60.079 63.158 31.78 9.56 41.76 3.27
6038 6128 1.078637 GGCGTCCTAGGACCCAAAC 60.079 63.158 31.78 17.62 41.76 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.