Multiple sequence alignment - TraesCS1A01G290100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G290100 chr1A 100.000 2306 0 0 1 2306 486895765 486898070 0.000000e+00 4259.0
1 TraesCS1A01G290100 chr1A 89.922 774 29 18 749 1506 486816555 486817295 0.000000e+00 952.0
2 TraesCS1A01G290100 chr1A 87.624 404 27 5 172 558 486815619 486816016 4.520000e-122 448.0
3 TraesCS1A01G290100 chr1A 83.104 509 49 12 843 1341 486750624 486751105 1.640000e-116 429.0
4 TraesCS1A01G290100 chr1A 84.163 221 11 10 1393 1612 486751118 486751315 2.340000e-45 193.0
5 TraesCS1A01G290100 chr1A 91.096 146 8 5 610 751 486816035 486816179 2.340000e-45 193.0
6 TraesCS1A01G290100 chr1A 82.427 239 17 9 225 442 486750284 486750518 3.910000e-43 185.0
7 TraesCS1A01G290100 chr1A 100.000 56 0 0 2251 2306 246440072 246440127 1.130000e-18 104.0
8 TraesCS1A01G290100 chr1A 100.000 56 0 0 2251 2306 419992735 419992680 1.130000e-18 104.0
9 TraesCS1A01G290100 chr1D 85.685 1481 111 53 175 1615 387059214 387060633 0.000000e+00 1467.0
10 TraesCS1A01G290100 chr1D 83.629 507 50 12 844 1342 386949558 386950039 1.630000e-121 446.0
11 TraesCS1A01G290100 chr1D 86.250 240 32 1 1072 1311 387193693 387193931 2.270000e-65 259.0
12 TraesCS1A01G290100 chr1D 82.906 234 16 8 1383 1615 386950035 386950245 3.020000e-44 189.0
13 TraesCS1A01G290100 chr1B 86.741 807 45 22 714 1503 520390226 520390987 0.000000e+00 841.0
14 TraesCS1A01G290100 chr1B 84.168 499 52 11 848 1342 520374033 520374508 2.090000e-125 459.0
15 TraesCS1A01G290100 chr1B 85.670 321 23 9 183 498 520395191 520394889 1.330000e-82 316.0
16 TraesCS1A01G290100 chr1B 85.897 312 22 7 182 480 520389902 520390204 1.720000e-81 313.0
17 TraesCS1A01G290100 chr1B 80.698 430 58 20 892 1314 520468717 520469128 6.190000e-81 311.0
18 TraesCS1A01G290100 chr1B 80.000 270 41 8 1108 1371 520399465 520399203 1.090000e-43 187.0
19 TraesCS1A01G290100 chr1B 79.535 215 18 10 1404 1615 520374510 520374701 1.860000e-26 130.0
20 TraesCS1A01G290100 chr3B 88.235 595 47 10 1661 2232 463483521 463484115 0.000000e+00 689.0
21 TraesCS1A01G290100 chr3B 88.067 595 48 10 1661 2232 534159015 534159609 0.000000e+00 684.0
22 TraesCS1A01G290100 chr6D 88.087 596 48 10 1662 2234 454064788 454064193 0.000000e+00 686.0
23 TraesCS1A01G290100 chr7B 88.067 595 48 10 1661 2232 380072665 380073259 0.000000e+00 684.0
24 TraesCS1A01G290100 chr7B 87.874 602 48 12 1661 2239 648274155 648273556 0.000000e+00 684.0
25 TraesCS1A01G290100 chr3D 87.960 598 48 11 1660 2234 24569061 24569657 0.000000e+00 684.0
26 TraesCS1A01G290100 chr3D 86.913 596 53 11 1663 2234 300618067 300618661 0.000000e+00 645.0
27 TraesCS1A01G290100 chrUn 87.899 595 49 10 1661 2232 136394691 136395285 0.000000e+00 678.0
28 TraesCS1A01G290100 chr6B 87.899 595 49 10 1661 2232 61211541 61212135 0.000000e+00 678.0
29 TraesCS1A01G290100 chr5B 87.708 602 49 13 1661 2239 710236273 710235674 0.000000e+00 678.0
30 TraesCS1A01G290100 chr2B 87.563 595 51 10 1661 2232 134253077 134253671 0.000000e+00 667.0
31 TraesCS1A01G290100 chr2A 89.936 467 40 5 1773 2232 537233572 537234038 1.530000e-166 595.0
32 TraesCS1A01G290100 chr7D 84.950 598 64 12 1663 2234 268310363 268310960 1.190000e-162 582.0
33 TraesCS1A01G290100 chr7D 83.137 593 56 21 1660 2234 562433139 562433705 3.420000e-138 501.0
34 TraesCS1A01G290100 chr4A 86.667 510 45 11 1660 2146 619150799 619150290 5.600000e-151 544.0
35 TraesCS1A01G290100 chr5D 80.763 577 85 17 1656 2213 495020698 495020129 5.890000e-116 427.0
36 TraesCS1A01G290100 chr5A 98.718 78 0 1 2230 2306 595119578 595119501 1.110000e-28 137.0
37 TraesCS1A01G290100 chr6A 96.203 79 1 2 2230 2306 480347831 480347909 6.690000e-26 128.0
38 TraesCS1A01G290100 chr6A 100.000 56 0 0 2251 2306 444846770 444846825 1.130000e-18 104.0
39 TraesCS1A01G290100 chr6A 100.000 56 0 0 2251 2306 454236635 454236690 1.130000e-18 104.0
40 TraesCS1A01G290100 chr6A 100.000 56 0 0 2251 2306 466814350 466814405 1.130000e-18 104.0
41 TraesCS1A01G290100 chr6A 96.970 33 0 1 2227 2259 175495750 175495781 1.000000e-03 54.7
42 TraesCS1A01G290100 chr7A 96.154 78 2 1 2230 2306 132083760 132083683 2.410000e-25 126.0
43 TraesCS1A01G290100 chr7A 92.308 78 5 1 2230 2306 176358124 176358047 2.420000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G290100 chr1A 486895765 486898070 2305 False 4259.0 4259 100.000000 1 2306 1 chr1A.!!$F2 2305
1 TraesCS1A01G290100 chr1A 486815619 486817295 1676 False 531.0 952 89.547333 172 1506 3 chr1A.!!$F4 1334
2 TraesCS1A01G290100 chr1A 486750284 486751315 1031 False 269.0 429 83.231333 225 1612 3 chr1A.!!$F3 1387
3 TraesCS1A01G290100 chr1D 387059214 387060633 1419 False 1467.0 1467 85.685000 175 1615 1 chr1D.!!$F1 1440
4 TraesCS1A01G290100 chr1D 386949558 386950245 687 False 317.5 446 83.267500 844 1615 2 chr1D.!!$F3 771
5 TraesCS1A01G290100 chr1B 520389902 520390987 1085 False 577.0 841 86.319000 182 1503 2 chr1B.!!$F3 1321
6 TraesCS1A01G290100 chr1B 520374033 520374701 668 False 294.5 459 81.851500 848 1615 2 chr1B.!!$F2 767
7 TraesCS1A01G290100 chr3B 463483521 463484115 594 False 689.0 689 88.235000 1661 2232 1 chr3B.!!$F1 571
8 TraesCS1A01G290100 chr3B 534159015 534159609 594 False 684.0 684 88.067000 1661 2232 1 chr3B.!!$F2 571
9 TraesCS1A01G290100 chr6D 454064193 454064788 595 True 686.0 686 88.087000 1662 2234 1 chr6D.!!$R1 572
10 TraesCS1A01G290100 chr7B 380072665 380073259 594 False 684.0 684 88.067000 1661 2232 1 chr7B.!!$F1 571
11 TraesCS1A01G290100 chr7B 648273556 648274155 599 True 684.0 684 87.874000 1661 2239 1 chr7B.!!$R1 578
12 TraesCS1A01G290100 chr3D 24569061 24569657 596 False 684.0 684 87.960000 1660 2234 1 chr3D.!!$F1 574
13 TraesCS1A01G290100 chr3D 300618067 300618661 594 False 645.0 645 86.913000 1663 2234 1 chr3D.!!$F2 571
14 TraesCS1A01G290100 chrUn 136394691 136395285 594 False 678.0 678 87.899000 1661 2232 1 chrUn.!!$F1 571
15 TraesCS1A01G290100 chr6B 61211541 61212135 594 False 678.0 678 87.899000 1661 2232 1 chr6B.!!$F1 571
16 TraesCS1A01G290100 chr5B 710235674 710236273 599 True 678.0 678 87.708000 1661 2239 1 chr5B.!!$R1 578
17 TraesCS1A01G290100 chr2B 134253077 134253671 594 False 667.0 667 87.563000 1661 2232 1 chr2B.!!$F1 571
18 TraesCS1A01G290100 chr7D 268310363 268310960 597 False 582.0 582 84.950000 1663 2234 1 chr7D.!!$F1 571
19 TraesCS1A01G290100 chr7D 562433139 562433705 566 False 501.0 501 83.137000 1660 2234 1 chr7D.!!$F2 574
20 TraesCS1A01G290100 chr4A 619150290 619150799 509 True 544.0 544 86.667000 1660 2146 1 chr4A.!!$R1 486
21 TraesCS1A01G290100 chr5D 495020129 495020698 569 True 427.0 427 80.763000 1656 2213 1 chr5D.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.040157 TGTTGCTGTTGAAGATGCGC 60.04 50.0 0.0 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1325 1817 0.03213 TGTTCTGACAGACAGCCGAC 59.968 55.0 4.15 0.0 45.38 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.542544 GTCGTCCTTTCGTATCCGTG 58.457 55.000 0.00 0.00 35.01 4.94
20 21 1.135575 GTCGTCCTTTCGTATCCGTGT 60.136 52.381 0.00 0.00 35.01 4.49
21 22 1.131126 TCGTCCTTTCGTATCCGTGTC 59.869 52.381 0.00 0.00 35.01 3.67
22 23 1.796617 CGTCCTTTCGTATCCGTGTCC 60.797 57.143 0.00 0.00 35.01 4.02
23 24 0.452987 TCCTTTCGTATCCGTGTCCG 59.547 55.000 0.00 0.00 35.01 4.79
24 25 1.143969 CCTTTCGTATCCGTGTCCGC 61.144 60.000 0.00 0.00 35.01 5.54
25 26 1.469126 CTTTCGTATCCGTGTCCGCG 61.469 60.000 0.00 0.00 35.01 6.46
33 34 3.309675 CGTGTCCGCGGATTGATC 58.690 61.111 33.58 18.74 0.00 2.92
34 35 2.237751 CGTGTCCGCGGATTGATCC 61.238 63.158 33.58 17.93 43.65 3.36
35 36 1.887707 GTGTCCGCGGATTGATCCC 60.888 63.158 33.58 17.12 44.24 3.85
36 37 2.063979 TGTCCGCGGATTGATCCCT 61.064 57.895 33.58 0.00 44.24 4.20
37 38 1.595382 GTCCGCGGATTGATCCCTG 60.595 63.158 33.58 0.00 44.24 4.45
38 39 2.063979 TCCGCGGATTGATCCCTGT 61.064 57.895 27.28 0.00 44.24 4.00
39 40 1.153168 CCGCGGATTGATCCCTGTT 60.153 57.895 24.07 0.00 44.24 3.16
40 41 0.748005 CCGCGGATTGATCCCTGTTT 60.748 55.000 24.07 0.00 44.24 2.83
41 42 1.474320 CCGCGGATTGATCCCTGTTTA 60.474 52.381 24.07 0.00 44.24 2.01
42 43 1.597663 CGCGGATTGATCCCTGTTTAC 59.402 52.381 0.00 0.00 44.24 2.01
43 44 1.597663 GCGGATTGATCCCTGTTTACG 59.402 52.381 4.49 0.00 44.24 3.18
44 45 2.210116 CGGATTGATCCCTGTTTACGG 58.790 52.381 4.49 0.00 44.24 4.02
45 46 2.159014 CGGATTGATCCCTGTTTACGGA 60.159 50.000 4.49 0.00 44.24 4.69
46 47 3.203716 GGATTGATCCCTGTTTACGGAC 58.796 50.000 0.00 0.00 41.20 4.79
47 48 2.373540 TTGATCCCTGTTTACGGACG 57.626 50.000 0.00 0.00 0.00 4.79
48 49 0.533491 TGATCCCTGTTTACGGACGG 59.467 55.000 0.00 0.00 0.00 4.79
49 50 0.179092 GATCCCTGTTTACGGACGGG 60.179 60.000 6.71 6.71 44.23 5.28
50 51 0.906282 ATCCCTGTTTACGGACGGGT 60.906 55.000 11.29 0.00 43.30 5.28
51 52 1.375013 CCCTGTTTACGGACGGGTG 60.375 63.158 11.29 2.12 43.30 4.61
52 53 2.030958 CCTGTTTACGGACGGGTGC 61.031 63.158 5.76 0.00 40.52 5.01
57 58 2.865598 TTACGGACGGGTGCGGAAA 61.866 57.895 16.76 7.96 44.15 3.13
58 59 2.768503 TTACGGACGGGTGCGGAAAG 62.769 60.000 16.76 0.00 44.15 2.62
59 60 4.367023 CGGACGGGTGCGGAAAGA 62.367 66.667 4.73 0.00 40.80 2.52
60 61 2.031465 GGACGGGTGCGGAAAGAA 59.969 61.111 0.00 0.00 0.00 2.52
61 62 1.598685 GGACGGGTGCGGAAAGAAA 60.599 57.895 0.00 0.00 0.00 2.52
62 63 0.958876 GGACGGGTGCGGAAAGAAAT 60.959 55.000 0.00 0.00 0.00 2.17
63 64 0.879090 GACGGGTGCGGAAAGAAATT 59.121 50.000 0.00 0.00 0.00 1.82
64 65 1.268625 GACGGGTGCGGAAAGAAATTT 59.731 47.619 0.00 0.00 0.00 1.82
65 66 2.485038 GACGGGTGCGGAAAGAAATTTA 59.515 45.455 0.00 0.00 0.00 1.40
66 67 3.086282 ACGGGTGCGGAAAGAAATTTAT 58.914 40.909 0.00 0.00 0.00 1.40
67 68 3.119637 ACGGGTGCGGAAAGAAATTTATG 60.120 43.478 0.00 0.00 0.00 1.90
68 69 3.119637 CGGGTGCGGAAAGAAATTTATGT 60.120 43.478 0.00 0.00 0.00 2.29
69 70 4.173256 GGGTGCGGAAAGAAATTTATGTG 58.827 43.478 0.00 0.00 0.00 3.21
70 71 4.321675 GGGTGCGGAAAGAAATTTATGTGT 60.322 41.667 0.00 0.00 0.00 3.72
71 72 5.227152 GGTGCGGAAAGAAATTTATGTGTT 58.773 37.500 0.00 0.00 0.00 3.32
72 73 5.118510 GGTGCGGAAAGAAATTTATGTGTTG 59.881 40.000 0.00 0.00 0.00 3.33
73 74 4.683781 TGCGGAAAGAAATTTATGTGTTGC 59.316 37.500 0.00 0.00 0.00 4.17
74 75 4.923281 GCGGAAAGAAATTTATGTGTTGCT 59.077 37.500 0.00 0.00 0.00 3.91
75 76 5.164061 GCGGAAAGAAATTTATGTGTTGCTG 60.164 40.000 0.00 0.00 0.00 4.41
76 77 5.920273 CGGAAAGAAATTTATGTGTTGCTGT 59.080 36.000 0.00 0.00 0.00 4.40
77 78 6.420604 CGGAAAGAAATTTATGTGTTGCTGTT 59.579 34.615 0.00 0.00 0.00 3.16
78 79 7.566709 GGAAAGAAATTTATGTGTTGCTGTTG 58.433 34.615 0.00 0.00 0.00 3.33
79 80 7.437862 GGAAAGAAATTTATGTGTTGCTGTTGA 59.562 33.333 0.00 0.00 0.00 3.18
80 81 8.715191 AAAGAAATTTATGTGTTGCTGTTGAA 57.285 26.923 0.00 0.00 0.00 2.69
81 82 7.935338 AGAAATTTATGTGTTGCTGTTGAAG 57.065 32.000 0.00 0.00 0.00 3.02
82 83 7.715657 AGAAATTTATGTGTTGCTGTTGAAGA 58.284 30.769 0.00 0.00 0.00 2.87
83 84 8.362639 AGAAATTTATGTGTTGCTGTTGAAGAT 58.637 29.630 0.00 0.00 0.00 2.40
84 85 7.878477 AATTTATGTGTTGCTGTTGAAGATG 57.122 32.000 0.00 0.00 0.00 2.90
85 86 2.780065 TGTGTTGCTGTTGAAGATGC 57.220 45.000 0.00 0.00 0.00 3.91
86 87 1.002576 TGTGTTGCTGTTGAAGATGCG 60.003 47.619 0.00 0.00 0.00 4.73
87 88 0.040157 TGTTGCTGTTGAAGATGCGC 60.040 50.000 0.00 0.00 0.00 6.09
88 89 0.730494 GTTGCTGTTGAAGATGCGCC 60.730 55.000 4.18 0.00 0.00 6.53
89 90 2.099062 GCTGTTGAAGATGCGCCG 59.901 61.111 4.18 0.00 0.00 6.46
90 91 2.390599 GCTGTTGAAGATGCGCCGA 61.391 57.895 4.18 0.00 0.00 5.54
91 92 1.712081 CTGTTGAAGATGCGCCGAG 59.288 57.895 4.18 0.00 0.00 4.63
92 93 1.005037 TGTTGAAGATGCGCCGAGT 60.005 52.632 4.18 0.00 0.00 4.18
93 94 1.291184 TGTTGAAGATGCGCCGAGTG 61.291 55.000 4.18 0.00 0.00 3.51
94 95 1.741401 TTGAAGATGCGCCGAGTGG 60.741 57.895 4.18 0.00 38.77 4.00
106 107 2.919666 CCGAGTGGCAAAATTACAGG 57.080 50.000 0.00 0.00 0.00 4.00
107 108 2.432444 CCGAGTGGCAAAATTACAGGA 58.568 47.619 0.00 0.00 0.00 3.86
108 109 2.161609 CCGAGTGGCAAAATTACAGGAC 59.838 50.000 0.00 0.00 0.00 3.85
109 110 2.811431 CGAGTGGCAAAATTACAGGACA 59.189 45.455 0.00 0.00 0.00 4.02
110 111 3.364964 CGAGTGGCAAAATTACAGGACAC 60.365 47.826 0.00 0.00 0.00 3.67
111 112 2.890945 AGTGGCAAAATTACAGGACACC 59.109 45.455 0.00 0.00 0.00 4.16
112 113 1.883275 TGGCAAAATTACAGGACACCG 59.117 47.619 0.00 0.00 0.00 4.94
113 114 2.156098 GGCAAAATTACAGGACACCGA 58.844 47.619 0.00 0.00 0.00 4.69
114 115 2.752903 GGCAAAATTACAGGACACCGAT 59.247 45.455 0.00 0.00 0.00 4.18
115 116 3.427503 GGCAAAATTACAGGACACCGATG 60.428 47.826 0.00 0.00 0.00 3.84
116 117 3.758300 CAAAATTACAGGACACCGATGC 58.242 45.455 0.00 0.00 0.00 3.91
117 118 3.350219 AAATTACAGGACACCGATGCT 57.650 42.857 0.00 0.00 0.00 3.79
118 119 2.604046 ATTACAGGACACCGATGCTC 57.396 50.000 0.00 0.00 0.00 4.26
119 120 1.557099 TTACAGGACACCGATGCTCT 58.443 50.000 0.00 0.00 0.00 4.09
120 121 1.103803 TACAGGACACCGATGCTCTC 58.896 55.000 0.00 0.00 0.00 3.20
121 122 0.900182 ACAGGACACCGATGCTCTCA 60.900 55.000 0.00 0.00 0.00 3.27
122 123 0.247460 CAGGACACCGATGCTCTCAA 59.753 55.000 0.00 0.00 0.00 3.02
123 124 1.134580 CAGGACACCGATGCTCTCAAT 60.135 52.381 0.00 0.00 0.00 2.57
124 125 1.556911 AGGACACCGATGCTCTCAATT 59.443 47.619 0.00 0.00 0.00 2.32
125 126 2.766263 AGGACACCGATGCTCTCAATTA 59.234 45.455 0.00 0.00 0.00 1.40
126 127 3.126831 GGACACCGATGCTCTCAATTAG 58.873 50.000 0.00 0.00 0.00 1.73
127 128 3.181475 GGACACCGATGCTCTCAATTAGA 60.181 47.826 0.00 0.00 0.00 2.10
137 138 4.734398 CTCTCAATTAGAGCTCCAGTGT 57.266 45.455 10.93 0.00 45.22 3.55
138 139 4.681744 CTCTCAATTAGAGCTCCAGTGTC 58.318 47.826 10.93 0.00 45.22 3.67
139 140 4.348486 TCTCAATTAGAGCTCCAGTGTCT 58.652 43.478 10.93 0.00 44.35 3.41
140 141 4.400884 TCTCAATTAGAGCTCCAGTGTCTC 59.599 45.833 10.93 0.00 44.35 3.36
141 142 4.348486 TCAATTAGAGCTCCAGTGTCTCT 58.652 43.478 10.93 10.40 40.08 3.10
142 143 4.400884 TCAATTAGAGCTCCAGTGTCTCTC 59.599 45.833 10.93 3.26 38.14 3.20
143 144 3.730215 TTAGAGCTCCAGTGTCTCTCT 57.270 47.619 10.93 9.30 38.14 3.10
144 145 2.128771 AGAGCTCCAGTGTCTCTCTC 57.871 55.000 10.93 0.00 32.11 3.20
145 146 1.635487 AGAGCTCCAGTGTCTCTCTCT 59.365 52.381 10.93 0.00 32.11 3.10
146 147 2.041620 AGAGCTCCAGTGTCTCTCTCTT 59.958 50.000 10.93 0.00 32.11 2.85
147 148 2.825532 GAGCTCCAGTGTCTCTCTCTTT 59.174 50.000 0.87 0.00 0.00 2.52
148 149 2.825532 AGCTCCAGTGTCTCTCTCTTTC 59.174 50.000 0.00 0.00 0.00 2.62
149 150 2.825532 GCTCCAGTGTCTCTCTCTTTCT 59.174 50.000 0.00 0.00 0.00 2.52
150 151 3.119495 GCTCCAGTGTCTCTCTCTTTCTC 60.119 52.174 0.00 0.00 0.00 2.87
151 152 4.078537 CTCCAGTGTCTCTCTCTTTCTCA 58.921 47.826 0.00 0.00 0.00 3.27
152 153 4.671831 TCCAGTGTCTCTCTCTTTCTCAT 58.328 43.478 0.00 0.00 0.00 2.90
153 154 5.083122 TCCAGTGTCTCTCTCTTTCTCATT 58.917 41.667 0.00 0.00 0.00 2.57
154 155 5.541868 TCCAGTGTCTCTCTCTTTCTCATTT 59.458 40.000 0.00 0.00 0.00 2.32
155 156 6.721668 TCCAGTGTCTCTCTCTTTCTCATTTA 59.278 38.462 0.00 0.00 0.00 1.40
156 157 7.035004 CCAGTGTCTCTCTCTTTCTCATTTAG 58.965 42.308 0.00 0.00 0.00 1.85
157 158 7.093988 CCAGTGTCTCTCTCTTTCTCATTTAGA 60.094 40.741 0.00 0.00 0.00 2.10
158 159 7.754924 CAGTGTCTCTCTCTTTCTCATTTAGAC 59.245 40.741 0.00 0.00 32.51 2.59
159 160 6.745450 GTGTCTCTCTCTTTCTCATTTAGACG 59.255 42.308 0.00 0.00 34.88 4.18
160 161 6.127869 TGTCTCTCTCTTTCTCATTTAGACGG 60.128 42.308 0.00 0.00 34.88 4.79
161 162 5.000012 TCTCTCTTTCTCATTTAGACGGC 58.000 43.478 0.00 0.00 32.51 5.68
162 163 4.462834 TCTCTCTTTCTCATTTAGACGGCA 59.537 41.667 0.00 0.00 32.51 5.69
163 164 4.495422 TCTCTTTCTCATTTAGACGGCAC 58.505 43.478 0.00 0.00 32.51 5.01
164 165 4.220821 TCTCTTTCTCATTTAGACGGCACT 59.779 41.667 0.00 0.00 32.51 4.40
165 166 5.417894 TCTCTTTCTCATTTAGACGGCACTA 59.582 40.000 0.00 0.00 32.51 2.74
166 167 5.651530 TCTTTCTCATTTAGACGGCACTAG 58.348 41.667 0.00 0.00 32.51 2.57
167 168 3.438297 TCTCATTTAGACGGCACTAGC 57.562 47.619 0.00 0.00 41.10 3.42
168 169 2.758423 TCTCATTTAGACGGCACTAGCA 59.242 45.455 0.00 0.00 44.61 3.49
169 170 3.194755 TCTCATTTAGACGGCACTAGCAA 59.805 43.478 0.00 0.00 44.61 3.91
170 171 3.521560 TCATTTAGACGGCACTAGCAAG 58.478 45.455 0.00 0.00 44.61 4.01
173 174 3.498927 TTAGACGGCACTAGCAAGTAC 57.501 47.619 0.00 0.00 44.61 2.73
176 177 2.422832 AGACGGCACTAGCAAGTACTAC 59.577 50.000 0.00 0.00 44.61 2.73
181 182 3.427243 GCACTAGCAAGTACTACTGACG 58.573 50.000 0.00 0.00 41.58 4.35
182 183 3.731264 GCACTAGCAAGTACTACTGACGG 60.731 52.174 0.00 0.00 41.58 4.79
207 209 5.813080 ACCTCCAATAACTAATTGAACGC 57.187 39.130 0.00 0.00 46.81 4.84
257 259 4.473444 TCTTGCCAAAATCAAGAAGAGGT 58.527 39.130 3.26 0.00 44.70 3.85
447 486 2.429971 GTCACATGCATCTCTCCTCTCA 59.570 50.000 0.00 0.00 0.00 3.27
467 510 1.134788 AGACGAAATAGTCAAGGGGCG 60.135 52.381 0.00 0.00 43.24 6.13
470 513 1.436983 GAAATAGTCAAGGGGCGGCG 61.437 60.000 0.51 0.51 0.00 6.46
551 610 3.551046 CCTGAATTATCCGAGTCGACTGG 60.551 52.174 25.58 22.22 0.00 4.00
567 626 5.575995 GTCGACTGGACAAACCTAATACTTC 59.424 44.000 8.70 0.00 45.36 3.01
576 635 7.336176 GGACAAACCTAATACTTCCTTCGATTT 59.664 37.037 0.00 0.00 35.41 2.17
791 1235 0.251742 CCCTTGCCCTTGGTGATGAA 60.252 55.000 0.00 0.00 0.00 2.57
792 1236 0.890683 CCTTGCCCTTGGTGATGAAC 59.109 55.000 0.00 0.00 0.00 3.18
793 1237 1.548582 CCTTGCCCTTGGTGATGAACT 60.549 52.381 0.00 0.00 0.00 3.01
794 1238 1.542915 CTTGCCCTTGGTGATGAACTG 59.457 52.381 0.00 0.00 0.00 3.16
795 1239 0.770499 TGCCCTTGGTGATGAACTGA 59.230 50.000 0.00 0.00 0.00 3.41
796 1240 1.355381 TGCCCTTGGTGATGAACTGAT 59.645 47.619 0.00 0.00 0.00 2.90
797 1241 1.747355 GCCCTTGGTGATGAACTGATG 59.253 52.381 0.00 0.00 0.00 3.07
919 1368 7.877612 GTGGTCAATTATTTTCCCAAGACAAAT 59.122 33.333 0.00 0.00 0.00 2.32
1062 1531 7.610580 AGGAGAAGAAGAAGAAGAAGAAGAA 57.389 36.000 0.00 0.00 0.00 2.52
1065 1534 8.147704 GGAGAAGAAGAAGAAGAAGAAGAAGAA 58.852 37.037 0.00 0.00 0.00 2.52
1066 1535 9.196552 GAGAAGAAGAAGAAGAAGAAGAAGAAG 57.803 37.037 0.00 0.00 0.00 2.85
1067 1536 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1164 1643 1.281353 CAACTACGGCAGCGCAAAA 59.719 52.632 11.47 0.00 0.00 2.44
1311 1803 1.362406 GCGCCTACAACTGAAGCTCC 61.362 60.000 0.00 0.00 0.00 4.70
1312 1804 0.741221 CGCCTACAACTGAAGCTCCC 60.741 60.000 0.00 0.00 0.00 4.30
1313 1805 0.324943 GCCTACAACTGAAGCTCCCA 59.675 55.000 0.00 0.00 0.00 4.37
1325 1817 2.464459 GCTCCCATCAAAGACGCCG 61.464 63.158 0.00 0.00 0.00 6.46
1329 1821 2.452813 CCATCAAAGACGCCGTCGG 61.453 63.158 12.13 6.99 40.69 4.79
1330 1822 2.813908 ATCAAAGACGCCGTCGGC 60.814 61.111 26.69 26.69 46.75 5.54
1342 1834 1.285950 CGTCGGCTGTCTGTCAGAA 59.714 57.895 3.51 0.00 46.27 3.02
1371 1864 1.219393 GACGCCCCTTCCTTCAGAG 59.781 63.158 0.00 0.00 0.00 3.35
1456 1968 3.028850 CTCCCCGGATTGTACAGAGTTA 58.971 50.000 0.73 0.00 0.00 2.24
1506 2041 0.996727 GTGCAATTTCGTGTGCGGTC 60.997 55.000 0.00 0.00 43.93 4.79
1507 2042 1.281353 GCAATTTCGTGTGCGGTCA 59.719 52.632 0.00 0.00 38.89 4.02
1509 2044 0.586319 CAATTTCGTGTGCGGTCACT 59.414 50.000 5.30 0.00 43.49 3.41
1511 2046 1.305201 ATTTCGTGTGCGGTCACTTT 58.695 45.000 5.30 0.00 43.49 2.66
1512 2047 0.653636 TTTCGTGTGCGGTCACTTTC 59.346 50.000 5.30 0.00 43.49 2.62
1513 2048 0.179094 TTCGTGTGCGGTCACTTTCT 60.179 50.000 5.30 0.00 43.49 2.52
1514 2049 0.874175 TCGTGTGCGGTCACTTTCTG 60.874 55.000 5.30 0.00 43.49 3.02
1515 2050 0.874175 CGTGTGCGGTCACTTTCTGA 60.874 55.000 5.30 0.00 43.49 3.27
1516 2051 1.512926 GTGTGCGGTCACTTTCTGAT 58.487 50.000 4.64 0.00 43.49 2.90
1517 2052 1.195448 GTGTGCGGTCACTTTCTGATG 59.805 52.381 4.64 0.00 43.49 3.07
1518 2053 0.166814 GTGCGGTCACTTTCTGATGC 59.833 55.000 0.00 0.00 40.03 3.91
1519 2054 0.250252 TGCGGTCACTTTCTGATGCA 60.250 50.000 0.00 0.00 39.50 3.96
1520 2055 0.445436 GCGGTCACTTTCTGATGCAG 59.555 55.000 0.00 0.00 34.71 4.41
1521 2056 1.800805 CGGTCACTTTCTGATGCAGT 58.199 50.000 0.00 0.00 32.61 4.40
1522 2057 1.728971 CGGTCACTTTCTGATGCAGTC 59.271 52.381 0.00 0.00 32.61 3.51
1523 2058 1.728971 GGTCACTTTCTGATGCAGTCG 59.271 52.381 0.00 0.00 32.61 4.18
1524 2059 2.408050 GTCACTTTCTGATGCAGTCGT 58.592 47.619 0.00 0.00 32.61 4.34
1525 2060 2.802816 GTCACTTTCTGATGCAGTCGTT 59.197 45.455 0.00 0.00 32.61 3.85
1526 2061 3.248602 GTCACTTTCTGATGCAGTCGTTT 59.751 43.478 0.00 0.00 32.61 3.60
1527 2062 3.494626 TCACTTTCTGATGCAGTCGTTTC 59.505 43.478 0.00 0.00 32.61 2.78
1528 2063 2.476619 ACTTTCTGATGCAGTCGTTTCG 59.523 45.455 0.00 0.00 32.61 3.46
1529 2064 2.432206 TTCTGATGCAGTCGTTTCGA 57.568 45.000 0.00 0.00 32.61 3.71
1530 2065 2.432206 TCTGATGCAGTCGTTTCGAA 57.568 45.000 0.00 0.00 37.72 3.71
1531 2066 2.749776 TCTGATGCAGTCGTTTCGAAA 58.250 42.857 6.47 6.47 37.72 3.46
1532 2067 3.127589 TCTGATGCAGTCGTTTCGAAAA 58.872 40.909 13.10 0.00 37.72 2.29
1533 2068 3.184379 TCTGATGCAGTCGTTTCGAAAAG 59.816 43.478 13.10 14.99 37.72 2.27
1534 2069 3.127589 TGATGCAGTCGTTTCGAAAAGA 58.872 40.909 20.38 20.38 37.72 2.52
1535 2070 3.558006 TGATGCAGTCGTTTCGAAAAGAA 59.442 39.130 24.72 12.20 37.72 2.52
1536 2071 4.034626 TGATGCAGTCGTTTCGAAAAGAAA 59.965 37.500 24.72 13.13 45.76 2.52
1559 2094 4.319177 ACTTTGTGATGCAGTACTCCTTC 58.681 43.478 0.00 0.00 0.00 3.46
1615 2152 0.309612 AACGCACGGGTGAACAAATC 59.690 50.000 4.58 0.00 0.00 2.17
1616 2153 0.534203 ACGCACGGGTGAACAAATCT 60.534 50.000 4.58 0.00 0.00 2.40
1617 2154 1.270412 ACGCACGGGTGAACAAATCTA 60.270 47.619 4.58 0.00 0.00 1.98
1618 2155 2.006888 CGCACGGGTGAACAAATCTAT 58.993 47.619 2.38 0.00 0.00 1.98
1619 2156 3.191669 CGCACGGGTGAACAAATCTATA 58.808 45.455 2.38 0.00 0.00 1.31
1620 2157 3.807622 CGCACGGGTGAACAAATCTATAT 59.192 43.478 2.38 0.00 0.00 0.86
1621 2158 4.986034 CGCACGGGTGAACAAATCTATATA 59.014 41.667 2.38 0.00 0.00 0.86
1622 2159 5.107607 CGCACGGGTGAACAAATCTATATAC 60.108 44.000 2.38 0.00 0.00 1.47
1623 2160 5.989777 GCACGGGTGAACAAATCTATATACT 59.010 40.000 2.38 0.00 0.00 2.12
1624 2161 6.482308 GCACGGGTGAACAAATCTATATACTT 59.518 38.462 2.38 0.00 0.00 2.24
1625 2162 7.654520 GCACGGGTGAACAAATCTATATACTTA 59.345 37.037 2.38 0.00 0.00 2.24
1626 2163 9.537192 CACGGGTGAACAAATCTATATACTTAA 57.463 33.333 0.00 0.00 0.00 1.85
1649 2186 6.541111 AAAAAGAAATAGAGACACGTGACC 57.459 37.500 25.01 13.41 0.00 4.02
1650 2187 3.870633 AGAAATAGAGACACGTGACCC 57.129 47.619 25.01 7.06 0.00 4.46
1651 2188 3.432378 AGAAATAGAGACACGTGACCCT 58.568 45.455 25.01 15.30 0.00 4.34
1652 2189 3.833070 AGAAATAGAGACACGTGACCCTT 59.167 43.478 25.01 7.13 0.00 3.95
1653 2190 3.870633 AATAGAGACACGTGACCCTTC 57.129 47.619 25.01 8.93 0.00 3.46
1654 2191 2.281539 TAGAGACACGTGACCCTTCA 57.718 50.000 25.01 0.00 0.00 3.02
1742 2283 1.565759 TGGTCCTTGAATCATGGAGGG 59.434 52.381 16.92 0.24 38.16 4.30
1744 2285 2.158696 GGTCCTTGAATCATGGAGGGAG 60.159 54.545 16.92 0.00 38.16 4.30
1747 2288 0.552848 TTGAATCATGGAGGGAGGGC 59.447 55.000 0.00 0.00 0.00 5.19
1812 2368 1.412079 AGGTTTGTGCCATGCTCAAA 58.588 45.000 11.06 11.06 45.40 2.69
1857 2416 7.032598 TCTTGAAGATGGAATAAGGTCCTTT 57.967 36.000 10.04 0.00 38.62 3.11
1859 2418 6.642733 TGAAGATGGAATAAGGTCCTTTCT 57.357 37.500 10.04 2.29 38.62 2.52
1871 2430 0.252696 TCCTTTCTGCCTAGCCCTCA 60.253 55.000 0.00 0.00 0.00 3.86
1950 2511 2.435410 GGATCCGGTCGGCGTTTT 60.435 61.111 6.85 0.00 34.68 2.43
1981 2542 0.613853 TCCGACTGGATCCGGTCTTT 60.614 55.000 38.58 15.64 46.92 2.52
1984 2545 1.736032 CGACTGGATCCGGTCTTTGTC 60.736 57.143 38.58 20.89 46.92 3.18
1992 2553 0.599558 CCGGTCTTTGTCCGTCTACA 59.400 55.000 0.00 0.00 45.63 2.74
2010 2571 1.154197 CATCTGTGTGTCTGCAGGTG 58.846 55.000 15.13 0.00 37.48 4.00
2041 2607 4.320861 CGATCTATGCTTCTCTTCATCGGT 60.321 45.833 0.00 0.00 0.00 4.69
2122 2691 1.000717 ACTACAACAATGTTTGCCCGC 60.001 47.619 0.00 0.00 41.05 6.13
2149 2718 3.728373 GGGAGGGGCAATGACGGT 61.728 66.667 0.00 0.00 0.00 4.83
2186 2755 2.135933 GCTTCAGTGCTTGTAGTCGTT 58.864 47.619 0.00 0.00 0.00 3.85
2188 2757 2.148916 TCAGTGCTTGTAGTCGTTGG 57.851 50.000 0.00 0.00 0.00 3.77
2194 2763 2.029649 TGCTTGTAGTCGTTGGTAGGTC 60.030 50.000 0.00 0.00 0.00 3.85
2241 2810 7.781548 TTTACTTCTAGTGTTCTGTTTGACC 57.218 36.000 0.00 0.00 0.00 4.02
2242 2811 5.353394 ACTTCTAGTGTTCTGTTTGACCA 57.647 39.130 0.00 0.00 0.00 4.02
2243 2812 5.360591 ACTTCTAGTGTTCTGTTTGACCAG 58.639 41.667 0.00 0.00 0.00 4.00
2244 2813 5.128827 ACTTCTAGTGTTCTGTTTGACCAGA 59.871 40.000 0.00 0.00 39.65 3.86
2245 2814 5.607939 TCTAGTGTTCTGTTTGACCAGAA 57.392 39.130 0.00 0.00 46.43 3.02
2250 2819 1.593196 TCTGTTTGACCAGAAAGCGG 58.407 50.000 0.00 0.00 38.49 5.52
2251 2820 1.140052 TCTGTTTGACCAGAAAGCGGA 59.860 47.619 0.00 0.00 38.49 5.54
2252 2821 1.946768 CTGTTTGACCAGAAAGCGGAA 59.053 47.619 0.00 0.00 34.23 4.30
2253 2822 1.946768 TGTTTGACCAGAAAGCGGAAG 59.053 47.619 0.00 0.00 0.00 3.46
2254 2823 5.681351 CTGTTTGACCAGAAAGCGGAAGC 62.681 52.174 0.00 0.00 46.32 3.86
2268 2837 2.646250 CGGAAGCCTTTAAACGTGTTG 58.354 47.619 0.00 0.00 0.00 3.33
2269 2838 2.288458 CGGAAGCCTTTAAACGTGTTGA 59.712 45.455 0.00 0.00 0.00 3.18
2270 2839 3.242804 CGGAAGCCTTTAAACGTGTTGAA 60.243 43.478 0.00 0.00 0.00 2.69
2271 2840 4.287720 GGAAGCCTTTAAACGTGTTGAAG 58.712 43.478 0.00 0.00 0.00 3.02
2272 2841 3.349488 AGCCTTTAAACGTGTTGAAGC 57.651 42.857 0.00 0.00 0.00 3.86
2273 2842 2.034179 AGCCTTTAAACGTGTTGAAGCC 59.966 45.455 0.00 0.00 0.00 4.35
2274 2843 2.860971 GCCTTTAAACGTGTTGAAGCCC 60.861 50.000 0.00 0.00 0.00 5.19
2275 2844 2.621526 CCTTTAAACGTGTTGAAGCCCT 59.378 45.455 0.00 0.00 0.00 5.19
2276 2845 3.067601 CCTTTAAACGTGTTGAAGCCCTT 59.932 43.478 0.00 0.00 0.00 3.95
2277 2846 3.974871 TTAAACGTGTTGAAGCCCTTC 57.025 42.857 0.00 1.12 39.91 3.46
2278 2847 1.757682 AAACGTGTTGAAGCCCTTCA 58.242 45.000 6.62 6.62 46.72 3.02
2287 2856 3.508845 TGAAGCCCTTCAGTTTAAGCT 57.491 42.857 6.62 0.00 43.90 3.74
2288 2857 3.832527 TGAAGCCCTTCAGTTTAAGCTT 58.167 40.909 3.48 3.48 43.90 3.74
2289 2858 4.427096 GAAGCCCTTCAGTTTAAGCTTC 57.573 45.455 0.00 6.78 46.38 3.86
2290 2859 3.508845 AGCCCTTCAGTTTAAGCTTCA 57.491 42.857 0.00 0.00 0.00 3.02
2291 2860 4.039603 AGCCCTTCAGTTTAAGCTTCAT 57.960 40.909 0.00 0.00 0.00 2.57
2292 2861 3.760684 AGCCCTTCAGTTTAAGCTTCATG 59.239 43.478 0.00 0.00 0.00 3.07
2293 2862 3.119352 GCCCTTCAGTTTAAGCTTCATGG 60.119 47.826 0.00 0.00 0.00 3.66
2294 2863 3.119352 CCCTTCAGTTTAAGCTTCATGGC 60.119 47.826 0.00 0.00 0.00 4.40
2295 2864 3.507233 CCTTCAGTTTAAGCTTCATGGCA 59.493 43.478 0.00 0.00 34.17 4.92
2296 2865 4.479619 CTTCAGTTTAAGCTTCATGGCAC 58.520 43.478 0.00 0.00 34.17 5.01
2297 2866 2.819608 TCAGTTTAAGCTTCATGGCACC 59.180 45.455 0.00 0.00 34.17 5.01
2298 2867 2.557924 CAGTTTAAGCTTCATGGCACCA 59.442 45.455 0.00 0.00 34.17 4.17
2299 2868 2.821969 AGTTTAAGCTTCATGGCACCAG 59.178 45.455 0.00 0.00 34.17 4.00
2300 2869 2.819608 GTTTAAGCTTCATGGCACCAGA 59.180 45.455 0.00 0.00 34.17 3.86
2301 2870 2.408271 TAAGCTTCATGGCACCAGAG 57.592 50.000 0.00 0.00 34.17 3.35
2302 2871 0.694771 AAGCTTCATGGCACCAGAGA 59.305 50.000 0.00 0.00 34.17 3.10
2303 2872 0.694771 AGCTTCATGGCACCAGAGAA 59.305 50.000 0.00 1.65 34.17 2.87
2304 2873 1.074405 AGCTTCATGGCACCAGAGAAA 59.926 47.619 8.23 0.00 34.17 2.52
2305 2874 1.200948 GCTTCATGGCACCAGAGAAAC 59.799 52.381 8.23 2.02 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.237751 GGATCAATCCGCGGACACG 61.238 63.158 33.75 21.62 39.22 4.49
17 18 3.719214 GGATCAATCCGCGGACAC 58.281 61.111 33.75 18.81 37.19 3.67
25 26 3.203716 GTCCGTAAACAGGGATCAATCC 58.796 50.000 0.01 0.01 46.41 3.01
26 27 2.864343 CGTCCGTAAACAGGGATCAATC 59.136 50.000 0.00 0.00 34.25 2.67
27 28 2.419574 CCGTCCGTAAACAGGGATCAAT 60.420 50.000 0.00 0.00 34.25 2.57
28 29 1.066716 CCGTCCGTAAACAGGGATCAA 60.067 52.381 0.00 0.00 34.25 2.57
29 30 0.533491 CCGTCCGTAAACAGGGATCA 59.467 55.000 0.00 0.00 34.25 2.92
30 31 0.179092 CCCGTCCGTAAACAGGGATC 60.179 60.000 0.00 0.00 44.70 3.36
31 32 0.906282 ACCCGTCCGTAAACAGGGAT 60.906 55.000 5.77 0.00 44.70 3.85
32 33 1.533753 ACCCGTCCGTAAACAGGGA 60.534 57.895 5.77 0.00 44.70 4.20
34 35 2.030958 GCACCCGTCCGTAAACAGG 61.031 63.158 0.00 0.00 0.00 4.00
35 36 2.377310 CGCACCCGTCCGTAAACAG 61.377 63.158 0.00 0.00 0.00 3.16
36 37 2.356075 CGCACCCGTCCGTAAACA 60.356 61.111 0.00 0.00 0.00 2.83
37 38 3.113979 CCGCACCCGTCCGTAAAC 61.114 66.667 0.00 0.00 0.00 2.01
38 39 2.374830 TTTCCGCACCCGTCCGTAAA 62.375 55.000 0.00 0.00 0.00 2.01
39 40 2.768503 CTTTCCGCACCCGTCCGTAA 62.769 60.000 0.00 0.00 0.00 3.18
40 41 3.285523 CTTTCCGCACCCGTCCGTA 62.286 63.158 0.00 0.00 0.00 4.02
41 42 4.675029 CTTTCCGCACCCGTCCGT 62.675 66.667 0.00 0.00 0.00 4.69
42 43 3.869473 TTCTTTCCGCACCCGTCCG 62.869 63.158 0.00 0.00 0.00 4.79
43 44 0.958876 ATTTCTTTCCGCACCCGTCC 60.959 55.000 0.00 0.00 0.00 4.79
44 45 0.879090 AATTTCTTTCCGCACCCGTC 59.121 50.000 0.00 0.00 0.00 4.79
45 46 1.324383 AAATTTCTTTCCGCACCCGT 58.676 45.000 0.00 0.00 0.00 5.28
46 47 3.119637 ACATAAATTTCTTTCCGCACCCG 60.120 43.478 0.00 0.00 0.00 5.28
47 48 4.173256 CACATAAATTTCTTTCCGCACCC 58.827 43.478 0.00 0.00 0.00 4.61
48 49 4.805219 ACACATAAATTTCTTTCCGCACC 58.195 39.130 0.00 0.00 0.00 5.01
49 50 5.388371 GCAACACATAAATTTCTTTCCGCAC 60.388 40.000 0.00 0.00 0.00 5.34
50 51 4.683781 GCAACACATAAATTTCTTTCCGCA 59.316 37.500 0.00 0.00 0.00 5.69
51 52 4.923281 AGCAACACATAAATTTCTTTCCGC 59.077 37.500 0.00 0.00 0.00 5.54
52 53 5.920273 ACAGCAACACATAAATTTCTTTCCG 59.080 36.000 0.00 0.00 0.00 4.30
53 54 7.437862 TCAACAGCAACACATAAATTTCTTTCC 59.562 33.333 0.00 0.00 0.00 3.13
54 55 8.351495 TCAACAGCAACACATAAATTTCTTTC 57.649 30.769 0.00 0.00 0.00 2.62
55 56 8.715191 TTCAACAGCAACACATAAATTTCTTT 57.285 26.923 0.00 0.00 0.00 2.52
56 57 8.196771 TCTTCAACAGCAACACATAAATTTCTT 58.803 29.630 0.00 0.00 0.00 2.52
57 58 7.715657 TCTTCAACAGCAACACATAAATTTCT 58.284 30.769 0.00 0.00 0.00 2.52
58 59 7.928908 TCTTCAACAGCAACACATAAATTTC 57.071 32.000 0.00 0.00 0.00 2.17
59 60 7.095523 GCATCTTCAACAGCAACACATAAATTT 60.096 33.333 0.00 0.00 0.00 1.82
60 61 6.366877 GCATCTTCAACAGCAACACATAAATT 59.633 34.615 0.00 0.00 0.00 1.82
61 62 5.865552 GCATCTTCAACAGCAACACATAAAT 59.134 36.000 0.00 0.00 0.00 1.40
62 63 5.221880 GCATCTTCAACAGCAACACATAAA 58.778 37.500 0.00 0.00 0.00 1.40
63 64 4.613394 CGCATCTTCAACAGCAACACATAA 60.613 41.667 0.00 0.00 0.00 1.90
64 65 3.120234 CGCATCTTCAACAGCAACACATA 60.120 43.478 0.00 0.00 0.00 2.29
65 66 2.351060 CGCATCTTCAACAGCAACACAT 60.351 45.455 0.00 0.00 0.00 3.21
66 67 1.002576 CGCATCTTCAACAGCAACACA 60.003 47.619 0.00 0.00 0.00 3.72
67 68 1.678360 CGCATCTTCAACAGCAACAC 58.322 50.000 0.00 0.00 0.00 3.32
68 69 0.040157 GCGCATCTTCAACAGCAACA 60.040 50.000 0.30 0.00 0.00 3.33
69 70 0.730494 GGCGCATCTTCAACAGCAAC 60.730 55.000 10.83 0.00 0.00 4.17
70 71 1.580942 GGCGCATCTTCAACAGCAA 59.419 52.632 10.83 0.00 0.00 3.91
71 72 2.679934 CGGCGCATCTTCAACAGCA 61.680 57.895 10.83 0.00 0.00 4.41
72 73 2.099062 CGGCGCATCTTCAACAGC 59.901 61.111 10.83 0.00 0.00 4.40
73 74 1.016130 ACTCGGCGCATCTTCAACAG 61.016 55.000 10.83 0.00 0.00 3.16
74 75 1.005037 ACTCGGCGCATCTTCAACA 60.005 52.632 10.83 0.00 0.00 3.33
75 76 1.421485 CACTCGGCGCATCTTCAAC 59.579 57.895 10.83 0.00 0.00 3.18
76 77 1.741401 CCACTCGGCGCATCTTCAA 60.741 57.895 10.83 0.00 0.00 2.69
77 78 2.125552 CCACTCGGCGCATCTTCA 60.126 61.111 10.83 0.00 0.00 3.02
87 88 2.161609 GTCCTGTAATTTTGCCACTCGG 59.838 50.000 0.00 0.00 0.00 4.63
88 89 2.811431 TGTCCTGTAATTTTGCCACTCG 59.189 45.455 0.00 0.00 0.00 4.18
89 90 3.057526 GGTGTCCTGTAATTTTGCCACTC 60.058 47.826 0.00 0.00 0.00 3.51
90 91 2.890945 GGTGTCCTGTAATTTTGCCACT 59.109 45.455 0.00 0.00 0.00 4.00
91 92 2.351350 CGGTGTCCTGTAATTTTGCCAC 60.351 50.000 0.00 0.00 0.00 5.01
92 93 1.883275 CGGTGTCCTGTAATTTTGCCA 59.117 47.619 0.00 0.00 0.00 4.92
93 94 2.156098 TCGGTGTCCTGTAATTTTGCC 58.844 47.619 0.00 0.00 0.00 4.52
94 95 3.758300 CATCGGTGTCCTGTAATTTTGC 58.242 45.455 0.00 0.00 0.00 3.68
95 96 3.440173 AGCATCGGTGTCCTGTAATTTTG 59.560 43.478 0.00 0.00 0.00 2.44
96 97 3.686016 AGCATCGGTGTCCTGTAATTTT 58.314 40.909 0.00 0.00 0.00 1.82
97 98 3.055094 AGAGCATCGGTGTCCTGTAATTT 60.055 43.478 0.00 0.00 42.67 1.82
98 99 2.501723 AGAGCATCGGTGTCCTGTAATT 59.498 45.455 0.00 0.00 42.67 1.40
99 100 2.101582 GAGAGCATCGGTGTCCTGTAAT 59.898 50.000 0.00 0.00 42.67 1.89
100 101 1.476891 GAGAGCATCGGTGTCCTGTAA 59.523 52.381 0.00 0.00 42.67 2.41
101 102 1.103803 GAGAGCATCGGTGTCCTGTA 58.896 55.000 0.00 0.00 42.67 2.74
102 103 0.900182 TGAGAGCATCGGTGTCCTGT 60.900 55.000 0.00 0.00 42.67 4.00
103 104 0.247460 TTGAGAGCATCGGTGTCCTG 59.753 55.000 0.00 0.00 42.67 3.86
104 105 1.198713 ATTGAGAGCATCGGTGTCCT 58.801 50.000 0.00 0.00 42.67 3.85
105 106 2.029838 AATTGAGAGCATCGGTGTCC 57.970 50.000 0.00 0.00 42.67 4.02
106 107 4.046938 TCTAATTGAGAGCATCGGTGTC 57.953 45.455 0.00 0.00 42.67 3.67
107 108 4.052159 CTCTAATTGAGAGCATCGGTGT 57.948 45.455 0.00 0.00 45.33 4.16
117 118 4.348486 AGACACTGGAGCTCTAATTGAGA 58.652 43.478 14.64 0.00 45.39 3.27
118 119 4.402155 AGAGACACTGGAGCTCTAATTGAG 59.598 45.833 14.64 0.00 45.33 3.02
119 120 4.348486 AGAGACACTGGAGCTCTAATTGA 58.652 43.478 14.64 0.00 37.25 2.57
120 121 4.402155 AGAGAGACACTGGAGCTCTAATTG 59.598 45.833 14.64 10.04 39.00 2.32
121 122 4.609301 AGAGAGACACTGGAGCTCTAATT 58.391 43.478 14.64 0.00 39.00 1.40
122 123 4.079787 AGAGAGAGACACTGGAGCTCTAAT 60.080 45.833 14.64 0.00 39.00 1.73
123 124 3.265737 AGAGAGAGACACTGGAGCTCTAA 59.734 47.826 14.64 1.32 39.00 2.10
124 125 2.843730 AGAGAGAGACACTGGAGCTCTA 59.156 50.000 14.64 6.65 39.00 2.43
125 126 1.635487 AGAGAGAGACACTGGAGCTCT 59.365 52.381 14.64 0.00 41.42 4.09
126 127 2.128771 AGAGAGAGACACTGGAGCTC 57.871 55.000 4.71 4.71 0.00 4.09
127 128 2.603075 AAGAGAGAGACACTGGAGCT 57.397 50.000 0.00 0.00 0.00 4.09
128 129 2.825532 AGAAAGAGAGAGACACTGGAGC 59.174 50.000 0.00 0.00 0.00 4.70
129 130 4.078537 TGAGAAAGAGAGAGACACTGGAG 58.921 47.826 0.00 0.00 0.00 3.86
130 131 4.105754 TGAGAAAGAGAGAGACACTGGA 57.894 45.455 0.00 0.00 0.00 3.86
131 132 5.404466 AATGAGAAAGAGAGAGACACTGG 57.596 43.478 0.00 0.00 0.00 4.00
132 133 7.754924 GTCTAAATGAGAAAGAGAGAGACACTG 59.245 40.741 0.00 0.00 35.37 3.66
133 134 7.361713 CGTCTAAATGAGAAAGAGAGAGACACT 60.362 40.741 0.00 0.00 35.37 3.55
134 135 6.745450 CGTCTAAATGAGAAAGAGAGAGACAC 59.255 42.308 0.00 0.00 35.37 3.67
135 136 6.127869 CCGTCTAAATGAGAAAGAGAGAGACA 60.128 42.308 0.00 0.00 35.37 3.41
136 137 6.262601 CCGTCTAAATGAGAAAGAGAGAGAC 58.737 44.000 0.00 0.00 35.37 3.36
137 138 5.163602 GCCGTCTAAATGAGAAAGAGAGAGA 60.164 44.000 0.00 0.00 35.37 3.10
138 139 5.040635 GCCGTCTAAATGAGAAAGAGAGAG 58.959 45.833 0.00 0.00 35.37 3.20
139 140 4.462834 TGCCGTCTAAATGAGAAAGAGAGA 59.537 41.667 0.00 0.00 35.37 3.10
140 141 4.564769 GTGCCGTCTAAATGAGAAAGAGAG 59.435 45.833 0.00 0.00 35.37 3.20
141 142 4.220821 AGTGCCGTCTAAATGAGAAAGAGA 59.779 41.667 0.00 0.00 35.37 3.10
142 143 4.499183 AGTGCCGTCTAAATGAGAAAGAG 58.501 43.478 0.00 0.00 35.37 2.85
143 144 4.537135 AGTGCCGTCTAAATGAGAAAGA 57.463 40.909 0.00 0.00 35.37 2.52
144 145 4.268884 GCTAGTGCCGTCTAAATGAGAAAG 59.731 45.833 0.00 0.00 35.37 2.62
145 146 4.181578 GCTAGTGCCGTCTAAATGAGAAA 58.818 43.478 0.00 0.00 35.37 2.52
146 147 3.194755 TGCTAGTGCCGTCTAAATGAGAA 59.805 43.478 0.00 0.00 35.36 2.87
147 148 2.758423 TGCTAGTGCCGTCTAAATGAGA 59.242 45.455 0.00 0.00 38.71 3.27
148 149 3.165058 TGCTAGTGCCGTCTAAATGAG 57.835 47.619 0.00 0.00 38.71 2.90
149 150 3.056107 ACTTGCTAGTGCCGTCTAAATGA 60.056 43.478 0.00 0.00 38.71 2.57
150 151 3.262420 ACTTGCTAGTGCCGTCTAAATG 58.738 45.455 0.00 0.00 38.71 2.32
151 152 3.611766 ACTTGCTAGTGCCGTCTAAAT 57.388 42.857 0.00 0.00 38.71 1.40
152 153 3.508793 AGTACTTGCTAGTGCCGTCTAAA 59.491 43.478 11.27 0.00 37.68 1.85
153 154 3.087031 AGTACTTGCTAGTGCCGTCTAA 58.913 45.455 11.27 0.00 37.68 2.10
154 155 2.719739 AGTACTTGCTAGTGCCGTCTA 58.280 47.619 11.27 0.00 37.68 2.59
155 156 1.546961 AGTACTTGCTAGTGCCGTCT 58.453 50.000 11.27 0.00 37.68 4.18
156 157 2.422832 AGTAGTACTTGCTAGTGCCGTC 59.577 50.000 11.27 3.53 37.68 4.79
157 158 2.163815 CAGTAGTACTTGCTAGTGCCGT 59.836 50.000 11.27 0.00 37.68 5.68
158 159 2.422479 TCAGTAGTACTTGCTAGTGCCG 59.578 50.000 11.27 0.00 40.43 5.69
159 160 3.731264 CGTCAGTAGTACTTGCTAGTGCC 60.731 52.174 11.27 1.66 40.43 5.01
160 161 3.427243 CGTCAGTAGTACTTGCTAGTGC 58.573 50.000 11.27 9.71 40.43 4.40
161 162 3.439476 ACCGTCAGTAGTACTTGCTAGTG 59.561 47.826 11.27 0.00 41.42 2.74
162 163 3.683802 ACCGTCAGTAGTACTTGCTAGT 58.316 45.455 0.00 6.00 38.44 2.57
163 164 5.448360 GGTTACCGTCAGTAGTACTTGCTAG 60.448 48.000 0.00 0.00 30.92 3.42
164 165 4.396166 GGTTACCGTCAGTAGTACTTGCTA 59.604 45.833 0.00 0.00 30.92 3.49
165 166 3.192212 GGTTACCGTCAGTAGTACTTGCT 59.808 47.826 0.00 0.00 30.92 3.91
166 167 3.192212 AGGTTACCGTCAGTAGTACTTGC 59.808 47.826 0.00 0.00 30.92 4.01
167 168 4.142513 GGAGGTTACCGTCAGTAGTACTTG 60.143 50.000 0.00 0.00 30.92 3.16
168 169 4.013050 GGAGGTTACCGTCAGTAGTACTT 58.987 47.826 0.00 0.00 30.92 2.24
169 170 3.009473 TGGAGGTTACCGTCAGTAGTACT 59.991 47.826 0.00 0.00 30.92 2.73
170 171 3.347216 TGGAGGTTACCGTCAGTAGTAC 58.653 50.000 0.00 0.00 30.92 2.73
173 174 5.126707 AGTTATTGGAGGTTACCGTCAGTAG 59.873 44.000 0.00 0.00 30.92 2.57
176 177 4.467198 AGTTATTGGAGGTTACCGTCAG 57.533 45.455 0.00 0.00 0.00 3.51
181 182 7.677982 GCGTTCAATTAGTTATTGGAGGTTACC 60.678 40.741 2.24 0.00 43.19 2.85
182 183 7.148373 TGCGTTCAATTAGTTATTGGAGGTTAC 60.148 37.037 2.24 0.00 43.19 2.50
207 209 1.948138 ATCTCGCGAGCGCTGATTG 60.948 57.895 30.97 5.49 39.59 2.67
219 221 4.511454 TGGCAAGATATTTGTACATCTCGC 59.489 41.667 0.00 0.00 31.71 5.03
221 223 9.455847 GATTTTGGCAAGATATTTGTACATCTC 57.544 33.333 2.90 0.00 31.10 2.75
223 225 9.585099 TTGATTTTGGCAAGATATTTGTACATC 57.415 29.630 2.90 0.00 0.00 3.06
257 259 1.599071 CGTGACCTTATCCGCTACGTA 59.401 52.381 0.00 0.00 0.00 3.57
447 486 1.134788 CGCCCCTTGACTATTTCGTCT 60.135 52.381 0.00 0.00 35.00 4.18
470 513 1.807573 CGTTTCCTCCGAGAGCAGC 60.808 63.158 0.00 0.00 0.00 5.25
551 610 7.845066 AATCGAAGGAAGTATTAGGTTTGTC 57.155 36.000 0.00 0.00 0.00 3.18
791 1235 2.451490 ACGACTGGAGTGATCATCAGT 58.549 47.619 21.31 21.31 42.37 3.41
792 1236 3.516981 AACGACTGGAGTGATCATCAG 57.483 47.619 16.82 16.82 0.00 2.90
793 1237 3.961480 AAACGACTGGAGTGATCATCA 57.039 42.857 0.00 0.00 0.00 3.07
794 1238 3.304559 CGAAAACGACTGGAGTGATCATC 59.695 47.826 0.00 0.00 0.00 2.92
795 1239 3.254060 CGAAAACGACTGGAGTGATCAT 58.746 45.455 0.00 0.00 0.00 2.45
796 1240 2.035449 ACGAAAACGACTGGAGTGATCA 59.965 45.455 0.00 0.00 0.00 2.92
797 1241 2.673833 ACGAAAACGACTGGAGTGATC 58.326 47.619 0.00 0.00 0.00 2.92
864 1308 1.563410 TGTGATGTGGCCCATGATGTA 59.437 47.619 10.99 0.00 32.56 2.29
919 1368 0.038709 GCCTTGCCGCACATGTTAAA 60.039 50.000 0.00 0.00 0.00 1.52
1062 1531 5.512921 CCTCCTCTTCTTGCTTTCTTCTTCT 60.513 44.000 0.00 0.00 0.00 2.85
1065 1534 3.906846 TCCTCCTCTTCTTGCTTTCTTCT 59.093 43.478 0.00 0.00 0.00 2.85
1066 1535 4.278975 TCCTCCTCTTCTTGCTTTCTTC 57.721 45.455 0.00 0.00 0.00 2.87
1067 1536 4.506448 CCTTCCTCCTCTTCTTGCTTTCTT 60.506 45.833 0.00 0.00 0.00 2.52
1210 1689 1.750399 GGTTGCTGATGGTCCGCAT 60.750 57.895 0.00 0.00 33.15 4.73
1213 1692 0.107508 ATGAGGTTGCTGATGGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
1311 1803 2.452813 CCGACGGCGTCTTTGATGG 61.453 63.158 33.90 23.51 35.23 3.51
1312 1804 3.081133 CCGACGGCGTCTTTGATG 58.919 61.111 33.90 18.98 35.23 3.07
1313 1805 2.813908 GCCGACGGCGTCTTTGAT 60.814 61.111 33.90 0.15 39.62 2.57
1325 1817 0.032130 TGTTCTGACAGACAGCCGAC 59.968 55.000 4.15 0.00 45.38 4.79
1329 1821 1.413382 CGAGTGTTCTGACAGACAGC 58.587 55.000 4.15 0.00 45.38 4.40
1330 1822 1.269257 TGCGAGTGTTCTGACAGACAG 60.269 52.381 4.15 0.00 46.97 3.51
1363 1856 4.020751 TCTGATGGTTCTGAACTCTGAAGG 60.021 45.833 19.05 5.61 35.07 3.46
1371 1864 6.749923 AAAGCTAATCTGATGGTTCTGAAC 57.250 37.500 12.05 12.05 34.06 3.18
1429 1941 1.138464 GTACAATCCGGGGAGAAGACC 59.862 57.143 0.00 0.00 0.00 3.85
1456 1968 6.986250 TCTCTATTCATCTGTACAATCGCAT 58.014 36.000 0.00 0.00 0.00 4.73
1506 2041 3.662713 CGAAACGACTGCATCAGAAAGTG 60.663 47.826 0.29 0.00 35.18 3.16
1507 2042 2.476619 CGAAACGACTGCATCAGAAAGT 59.523 45.455 0.29 0.00 35.18 2.66
1509 2044 2.749776 TCGAAACGACTGCATCAGAAA 58.250 42.857 0.29 0.00 35.18 2.52
1511 2046 2.432206 TTCGAAACGACTGCATCAGA 57.568 45.000 0.00 0.00 34.89 3.27
1512 2047 3.184379 TCTTTTCGAAACGACTGCATCAG 59.816 43.478 10.79 1.30 34.89 2.90
1513 2048 3.127589 TCTTTTCGAAACGACTGCATCA 58.872 40.909 10.79 0.00 34.89 3.07
1514 2049 3.788434 TCTTTTCGAAACGACTGCATC 57.212 42.857 10.79 0.00 34.89 3.91
1515 2050 4.545823 TTTCTTTTCGAAACGACTGCAT 57.454 36.364 15.83 0.00 36.72 3.96
1516 2051 4.092816 GTTTTCTTTTCGAAACGACTGCA 58.907 39.130 15.83 0.00 41.13 4.41
1517 2052 4.340263 AGTTTTCTTTTCGAAACGACTGC 58.660 39.130 15.83 9.14 41.13 4.40
1518 2053 6.304683 ACAAAGTTTTCTTTTCGAAACGACTG 59.695 34.615 15.83 9.35 46.55 3.51
1519 2054 6.304683 CACAAAGTTTTCTTTTCGAAACGACT 59.695 34.615 15.83 8.62 46.55 4.18
1520 2055 6.303733 TCACAAAGTTTTCTTTTCGAAACGAC 59.696 34.615 15.83 6.59 46.55 4.34
1521 2056 6.372185 TCACAAAGTTTTCTTTTCGAAACGA 58.628 32.000 10.79 11.80 46.55 3.85
1522 2057 6.605496 TCACAAAGTTTTCTTTTCGAAACG 57.395 33.333 10.79 9.26 46.55 3.60
1523 2058 6.894517 GCATCACAAAGTTTTCTTTTCGAAAC 59.105 34.615 10.79 0.00 46.55 2.78
1524 2059 6.587990 TGCATCACAAAGTTTTCTTTTCGAAA 59.412 30.769 6.47 6.47 46.55 3.46
1525 2060 6.096036 TGCATCACAAAGTTTTCTTTTCGAA 58.904 32.000 0.00 0.00 46.55 3.71
1526 2061 5.645624 TGCATCACAAAGTTTTCTTTTCGA 58.354 33.333 0.00 0.00 46.55 3.71
1527 2062 5.516339 ACTGCATCACAAAGTTTTCTTTTCG 59.484 36.000 0.00 0.00 46.55 3.46
1528 2063 6.892310 ACTGCATCACAAAGTTTTCTTTTC 57.108 33.333 0.00 0.00 46.55 2.29
1529 2064 7.547227 AGTACTGCATCACAAAGTTTTCTTTT 58.453 30.769 0.00 0.00 46.55 2.27
1531 2066 6.238759 GGAGTACTGCATCACAAAGTTTTCTT 60.239 38.462 9.84 0.00 42.58 2.52
1532 2067 5.239525 GGAGTACTGCATCACAAAGTTTTCT 59.760 40.000 9.84 0.00 0.00 2.52
1533 2068 5.239525 AGGAGTACTGCATCACAAAGTTTTC 59.760 40.000 17.34 0.00 0.00 2.29
1534 2069 5.133221 AGGAGTACTGCATCACAAAGTTTT 58.867 37.500 17.34 0.00 0.00 2.43
1535 2070 4.718961 AGGAGTACTGCATCACAAAGTTT 58.281 39.130 17.34 0.00 0.00 2.66
1536 2071 4.357918 AGGAGTACTGCATCACAAAGTT 57.642 40.909 17.34 0.00 0.00 2.66
1559 2094 8.119226 CCAAATTATAGCGTTCAAGAAGAAGAG 58.881 37.037 0.00 0.00 36.78 2.85
1626 2163 5.469084 GGGTCACGTGTCTCTATTTCTTTTT 59.531 40.000 16.51 0.00 0.00 1.94
1627 2164 4.995487 GGGTCACGTGTCTCTATTTCTTTT 59.005 41.667 16.51 0.00 0.00 2.27
1628 2165 4.283722 AGGGTCACGTGTCTCTATTTCTTT 59.716 41.667 13.73 0.00 0.00 2.52
1629 2166 3.833070 AGGGTCACGTGTCTCTATTTCTT 59.167 43.478 13.73 0.00 0.00 2.52
1630 2167 3.432378 AGGGTCACGTGTCTCTATTTCT 58.568 45.455 13.73 0.00 0.00 2.52
1631 2168 3.870633 AGGGTCACGTGTCTCTATTTC 57.129 47.619 13.73 0.00 0.00 2.17
1632 2169 3.576982 TGAAGGGTCACGTGTCTCTATTT 59.423 43.478 15.61 0.13 0.00 1.40
1633 2170 3.056749 GTGAAGGGTCACGTGTCTCTATT 60.057 47.826 15.61 0.89 44.58 1.73
1634 2171 2.492484 GTGAAGGGTCACGTGTCTCTAT 59.508 50.000 15.61 6.37 44.58 1.98
1635 2172 1.884579 GTGAAGGGTCACGTGTCTCTA 59.115 52.381 15.61 0.00 44.58 2.43
1636 2173 0.674534 GTGAAGGGTCACGTGTCTCT 59.325 55.000 16.51 12.91 44.58 3.10
1637 2174 3.196613 GTGAAGGGTCACGTGTCTC 57.803 57.895 16.51 10.38 44.58 3.36
1645 2182 2.583441 CGGCAGGAGTGAAGGGTCA 61.583 63.158 0.00 0.00 0.00 4.02
1646 2183 1.827399 TTCGGCAGGAGTGAAGGGTC 61.827 60.000 0.00 0.00 0.00 4.46
1647 2184 1.841556 TTCGGCAGGAGTGAAGGGT 60.842 57.895 0.00 0.00 0.00 4.34
1648 2185 1.376037 GTTCGGCAGGAGTGAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
1649 2186 0.390472 GAGTTCGGCAGGAGTGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
1650 2187 0.390472 GGAGTTCGGCAGGAGTGAAG 60.390 60.000 0.00 0.00 0.00 3.02
1651 2188 1.671742 GGAGTTCGGCAGGAGTGAA 59.328 57.895 0.00 0.00 0.00 3.18
1652 2189 2.283529 GGGAGTTCGGCAGGAGTGA 61.284 63.158 0.00 0.00 0.00 3.41
1653 2190 1.903877 ATGGGAGTTCGGCAGGAGTG 61.904 60.000 0.00 0.00 0.00 3.51
1654 2191 1.613630 ATGGGAGTTCGGCAGGAGT 60.614 57.895 0.00 0.00 0.00 3.85
1655 2192 1.144936 GATGGGAGTTCGGCAGGAG 59.855 63.158 0.00 0.00 0.00 3.69
1656 2193 0.032515 TAGATGGGAGTTCGGCAGGA 60.033 55.000 0.00 0.00 0.00 3.86
1657 2194 0.390860 CTAGATGGGAGTTCGGCAGG 59.609 60.000 0.00 0.00 0.00 4.85
1658 2195 0.390860 CCTAGATGGGAGTTCGGCAG 59.609 60.000 0.00 0.00 0.00 4.85
1793 2349 1.761784 TTTTGAGCATGGCACAAACCT 59.238 42.857 12.20 0.00 45.36 3.50
1812 2368 2.456577 AGCCGCCATCACCTTATTTTT 58.543 42.857 0.00 0.00 0.00 1.94
1815 2371 1.212935 AGAAGCCGCCATCACCTTATT 59.787 47.619 0.00 0.00 0.00 1.40
1857 2416 1.460305 GGGATGAGGGCTAGGCAGA 60.460 63.158 19.14 0.89 0.00 4.26
1859 2418 2.844362 CGGGATGAGGGCTAGGCA 60.844 66.667 19.14 0.00 0.00 4.75
1871 2430 0.462047 GCTCGAAACATCACCGGGAT 60.462 55.000 6.32 2.55 36.39 3.85
1887 2446 2.202623 ACGCCTTCGACGATGCTC 60.203 61.111 15.23 5.22 39.41 4.26
1950 2511 1.409064 CCAGTCGGATCCATCGAAGAA 59.591 52.381 13.41 0.00 43.58 2.52
1981 2542 2.228103 GACACACAGATGTAGACGGACA 59.772 50.000 0.00 0.00 36.72 4.02
1984 2545 2.868662 CAGACACACAGATGTAGACGG 58.131 52.381 0.00 0.00 36.72 4.79
1992 2553 0.035881 CCACCTGCAGACACACAGAT 59.964 55.000 17.39 0.00 35.90 2.90
2010 2571 2.630580 AGAAGCATAGATCGGAAGGACC 59.369 50.000 0.00 0.00 0.00 4.46
2041 2607 1.227999 GCGCACTAGAACAGCAACCA 61.228 55.000 0.30 0.00 0.00 3.67
2186 2755 0.392998 GGTCCGTAGACGACCTACCA 60.393 60.000 3.07 0.50 43.78 3.25
2188 2757 1.012841 CAGGTCCGTAGACGACCTAC 58.987 60.000 19.06 0.00 44.54 3.18
2194 2763 1.671979 TACATCCAGGTCCGTAGACG 58.328 55.000 0.00 0.00 44.54 4.18
2234 2803 1.335051 GCTTCCGCTTTCTGGTCAAAC 60.335 52.381 0.00 0.00 0.00 2.93
2236 2805 0.889186 GGCTTCCGCTTTCTGGTCAA 60.889 55.000 0.00 0.00 36.09 3.18
2237 2806 1.302511 GGCTTCCGCTTTCTGGTCA 60.303 57.895 0.00 0.00 36.09 4.02
2238 2807 0.606673 AAGGCTTCCGCTTTCTGGTC 60.607 55.000 0.00 0.00 36.09 4.02
2239 2808 0.178990 AAAGGCTTCCGCTTTCTGGT 60.179 50.000 0.00 0.00 33.97 4.00
2240 2809 1.821216 TAAAGGCTTCCGCTTTCTGG 58.179 50.000 0.00 0.00 33.97 3.86
2241 2810 3.565516 GTTTAAAGGCTTCCGCTTTCTG 58.434 45.455 0.00 0.00 33.97 3.02
2242 2811 2.225727 CGTTTAAAGGCTTCCGCTTTCT 59.774 45.455 0.00 0.00 33.97 2.52
2243 2812 2.031420 ACGTTTAAAGGCTTCCGCTTTC 60.031 45.455 0.00 0.00 33.97 2.62
2244 2813 1.951602 ACGTTTAAAGGCTTCCGCTTT 59.048 42.857 0.00 0.00 36.99 3.51
2245 2814 1.265905 CACGTTTAAAGGCTTCCGCTT 59.734 47.619 0.00 0.00 36.09 4.68
2246 2815 0.872388 CACGTTTAAAGGCTTCCGCT 59.128 50.000 0.00 0.00 36.09 5.52
2247 2816 0.589708 ACACGTTTAAAGGCTTCCGC 59.410 50.000 0.00 0.00 0.00 5.54
2248 2817 2.288458 TCAACACGTTTAAAGGCTTCCG 59.712 45.455 0.00 3.66 0.00 4.30
2249 2818 3.974871 TCAACACGTTTAAAGGCTTCC 57.025 42.857 0.00 0.00 0.00 3.46
2250 2819 3.729217 GCTTCAACACGTTTAAAGGCTTC 59.271 43.478 0.00 0.00 0.00 3.86
2251 2820 3.490249 GGCTTCAACACGTTTAAAGGCTT 60.490 43.478 15.58 0.00 38.89 4.35
2252 2821 2.034179 GGCTTCAACACGTTTAAAGGCT 59.966 45.455 15.58 0.00 38.89 4.58
2253 2822 2.390938 GGCTTCAACACGTTTAAAGGC 58.609 47.619 7.79 10.64 35.73 4.35
2254 2823 2.621526 AGGGCTTCAACACGTTTAAAGG 59.378 45.455 6.36 6.36 0.00 3.11
2255 2824 3.982576 AGGGCTTCAACACGTTTAAAG 57.017 42.857 0.00 0.00 0.00 1.85
2256 2825 3.695060 TGAAGGGCTTCAACACGTTTAAA 59.305 39.130 0.00 0.00 45.56 1.52
2257 2826 3.280295 TGAAGGGCTTCAACACGTTTAA 58.720 40.909 0.00 0.00 45.56 1.52
2258 2827 2.920524 TGAAGGGCTTCAACACGTTTA 58.079 42.857 0.00 0.00 45.56 2.01
2259 2828 1.757682 TGAAGGGCTTCAACACGTTT 58.242 45.000 0.00 0.00 45.56 3.60
2260 2829 3.487576 TGAAGGGCTTCAACACGTT 57.512 47.368 0.00 0.00 45.56 3.99
2267 2836 3.508845 AGCTTAAACTGAAGGGCTTCA 57.491 42.857 0.00 0.00 46.27 3.02
2268 2837 4.427096 GAAGCTTAAACTGAAGGGCTTC 57.573 45.455 0.00 9.20 45.13 3.86
2269 2838 3.832527 TGAAGCTTAAACTGAAGGGCTT 58.167 40.909 0.00 0.00 41.73 4.35
2270 2839 3.508845 TGAAGCTTAAACTGAAGGGCT 57.491 42.857 0.00 0.00 0.00 5.19
2271 2840 3.119352 CCATGAAGCTTAAACTGAAGGGC 60.119 47.826 0.00 0.00 0.00 5.19
2272 2841 3.119352 GCCATGAAGCTTAAACTGAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
2273 2842 3.507233 TGCCATGAAGCTTAAACTGAAGG 59.493 43.478 0.00 0.00 0.00 3.46
2274 2843 4.479619 GTGCCATGAAGCTTAAACTGAAG 58.520 43.478 0.00 0.00 0.00 3.02
2275 2844 3.255642 GGTGCCATGAAGCTTAAACTGAA 59.744 43.478 0.00 0.00 0.00 3.02
2276 2845 2.819608 GGTGCCATGAAGCTTAAACTGA 59.180 45.455 0.00 0.00 0.00 3.41
2277 2846 2.557924 TGGTGCCATGAAGCTTAAACTG 59.442 45.455 0.00 0.00 0.00 3.16
2278 2847 2.821969 CTGGTGCCATGAAGCTTAAACT 59.178 45.455 0.00 0.00 0.00 2.66
2279 2848 2.819608 TCTGGTGCCATGAAGCTTAAAC 59.180 45.455 0.00 0.00 0.00 2.01
2280 2849 3.084039 CTCTGGTGCCATGAAGCTTAAA 58.916 45.455 0.00 0.00 0.00 1.52
2281 2850 2.305635 TCTCTGGTGCCATGAAGCTTAA 59.694 45.455 0.00 0.00 0.00 1.85
2282 2851 1.908619 TCTCTGGTGCCATGAAGCTTA 59.091 47.619 0.00 0.00 0.00 3.09
2283 2852 0.694771 TCTCTGGTGCCATGAAGCTT 59.305 50.000 0.00 0.00 0.00 3.74
2284 2853 0.694771 TTCTCTGGTGCCATGAAGCT 59.305 50.000 0.00 0.00 0.00 3.74
2285 2854 1.200948 GTTTCTCTGGTGCCATGAAGC 59.799 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.