Multiple sequence alignment - TraesCS1A01G290000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G290000 chr1A 100.000 2586 0 0 1 2586 486817796 486820381 0.000000e+00 4776.0
1 TraesCS1A01G290000 chr1A 92.517 882 57 9 1712 2586 445494323 445493444 0.000000e+00 1254.0
2 TraesCS1A01G290000 chr1A 86.217 341 25 10 449 782 486941322 486941647 1.470000e-92 350.0
3 TraesCS1A01G290000 chr1A 89.000 200 22 0 1099 1298 486953458 486953657 5.530000e-62 248.0
4 TraesCS1A01G290000 chr1A 78.853 279 36 16 63 323 486944154 486944427 1.590000e-37 167.0
5 TraesCS1A01G290000 chr1A 90.323 93 7 1 55 147 486753796 486753886 1.260000e-23 121.0
6 TraesCS1A01G290000 chr5A 93.076 881 54 7 1712 2586 365259527 365260406 0.000000e+00 1282.0
7 TraesCS1A01G290000 chr5A 92.622 881 57 8 1712 2586 366151089 366151967 0.000000e+00 1260.0
8 TraesCS1A01G290000 chr5A 100.000 28 0 0 16 43 433489998 433489971 5.000000e-03 52.8
9 TraesCS1A01G290000 chr6A 92.955 880 57 5 1712 2586 215111728 215110849 0.000000e+00 1277.0
10 TraesCS1A01G290000 chr6A 92.525 883 56 9 1711 2586 579171952 579172831 0.000000e+00 1256.0
11 TraesCS1A01G290000 chr1D 92.963 881 53 9 1712 2586 143143555 143144432 0.000000e+00 1275.0
12 TraesCS1A01G290000 chr1D 84.179 335 26 10 468 801 387186696 387187004 1.500000e-77 300.0
13 TraesCS1A01G290000 chr1D 80.892 314 31 15 63 357 387186193 387186496 1.200000e-53 220.0
14 TraesCS1A01G290000 chr1D 81.752 274 30 11 55 315 387191078 387191344 7.250000e-51 211.0
15 TraesCS1A01G290000 chr4A 92.727 880 56 8 1712 2586 242824552 242823676 0.000000e+00 1264.0
16 TraesCS1A01G290000 chr7A 92.622 881 58 7 1711 2586 245818809 245819687 0.000000e+00 1260.0
17 TraesCS1A01G290000 chr2A 92.597 878 60 5 1712 2586 670477060 670476185 0.000000e+00 1256.0
18 TraesCS1A01G290000 chr1B 89.793 627 53 7 943 1568 520399618 520399002 0.000000e+00 793.0
19 TraesCS1A01G290000 chr1B 89.441 322 21 5 481 802 520404927 520405235 6.710000e-106 394.0
20 TraesCS1A01G290000 chr1B 87.330 221 24 3 1081 1298 520468907 520469126 1.540000e-62 250.0
21 TraesCS1A01G290000 chr1B 89.308 159 8 5 798 948 520399885 520399728 9.450000e-45 191.0
22 TraesCS1A01G290000 chr1B 85.906 149 16 3 471 618 520393573 520393717 1.240000e-33 154.0
23 TraesCS1A01G290000 chr1B 87.931 116 4 4 686 801 520400058 520399953 7.510000e-26 128.0
24 TraesCS1A01G290000 chr1B 92.982 57 2 2 1036 1090 520468818 520468874 5.930000e-12 82.4
25 TraesCS1A01G290000 chr6D 86.916 107 13 1 1604 1710 128901186 128901081 4.520000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G290000 chr1A 486817796 486820381 2585 False 4776.000000 4776 100.000000 1 2586 1 chr1A.!!$F2 2585
1 TraesCS1A01G290000 chr1A 445493444 445494323 879 True 1254.000000 1254 92.517000 1712 2586 1 chr1A.!!$R1 874
2 TraesCS1A01G290000 chr1A 486941322 486944427 3105 False 258.500000 350 82.535000 63 782 2 chr1A.!!$F4 719
3 TraesCS1A01G290000 chr5A 365259527 365260406 879 False 1282.000000 1282 93.076000 1712 2586 1 chr5A.!!$F1 874
4 TraesCS1A01G290000 chr5A 366151089 366151967 878 False 1260.000000 1260 92.622000 1712 2586 1 chr5A.!!$F2 874
5 TraesCS1A01G290000 chr6A 215110849 215111728 879 True 1277.000000 1277 92.955000 1712 2586 1 chr6A.!!$R1 874
6 TraesCS1A01G290000 chr6A 579171952 579172831 879 False 1256.000000 1256 92.525000 1711 2586 1 chr6A.!!$F1 875
7 TraesCS1A01G290000 chr1D 143143555 143144432 877 False 1275.000000 1275 92.963000 1712 2586 1 chr1D.!!$F1 874
8 TraesCS1A01G290000 chr1D 387186193 387187004 811 False 260.000000 300 82.535500 63 801 2 chr1D.!!$F3 738
9 TraesCS1A01G290000 chr4A 242823676 242824552 876 True 1264.000000 1264 92.727000 1712 2586 1 chr4A.!!$R1 874
10 TraesCS1A01G290000 chr7A 245818809 245819687 878 False 1260.000000 1260 92.622000 1711 2586 1 chr7A.!!$F1 875
11 TraesCS1A01G290000 chr2A 670476185 670477060 875 True 1256.000000 1256 92.597000 1712 2586 1 chr2A.!!$R1 874
12 TraesCS1A01G290000 chr1B 520399002 520400058 1056 True 370.666667 793 89.010667 686 1568 3 chr1B.!!$R1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 301 0.108138 AGTAACATCGGCACCAGCTC 60.108 55.0 0.0 0.0 41.70 4.09 F
530 652 0.179086 ATGCACGATGTCCATGCGTA 60.179 50.0 0.0 0.0 42.44 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1888 0.034198 TGATCCCGTCACGCTTTCAA 59.966 50.0 0.00 0.0 0.0 2.69 R
1596 1929 0.036388 TTGCTTCAGGATCCCGTCAC 60.036 55.0 8.55 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.963383 ATTTTTGTGTCCACGACTGAC 57.037 42.857 0.00 0.00 33.15 3.51
23 24 2.388310 TTTTGTGTCCACGACTGACA 57.612 45.000 0.00 0.00 40.28 3.58
24 25 1.934589 TTTGTGTCCACGACTGACAG 58.065 50.000 0.00 0.00 42.99 3.51
25 26 1.107945 TTGTGTCCACGACTGACAGA 58.892 50.000 10.08 3.76 42.99 3.41
26 27 1.107945 TGTGTCCACGACTGACAGAA 58.892 50.000 10.08 0.00 42.99 3.02
27 28 1.478916 TGTGTCCACGACTGACAGAAA 59.521 47.619 10.08 0.00 42.99 2.52
28 29 2.093921 TGTGTCCACGACTGACAGAAAA 60.094 45.455 10.08 0.00 42.99 2.29
29 30 2.933906 GTGTCCACGACTGACAGAAAAA 59.066 45.455 10.08 0.00 42.99 1.94
75 76 2.543037 TATGCTAGGTGTCAGGTGGA 57.457 50.000 0.00 0.00 0.00 4.02
85 86 0.976641 GTCAGGTGGAGTGTGGATCA 59.023 55.000 0.00 0.00 0.00 2.92
122 123 3.004106 GCAGGGAATTTATGCTAGCTGTG 59.996 47.826 17.23 0.00 37.00 3.66
134 142 5.173774 TGCTAGCTGTGAAAAAGAAACAG 57.826 39.130 17.23 0.00 43.37 3.16
136 144 5.008019 TGCTAGCTGTGAAAAAGAAACAGAG 59.992 40.000 17.23 0.00 43.22 3.35
149 157 1.972588 AACAGAGGTAGGCCCTGAAT 58.027 50.000 12.31 0.00 46.51 2.57
150 158 1.972588 ACAGAGGTAGGCCCTGAATT 58.027 50.000 12.31 0.00 46.51 2.17
152 160 3.460825 ACAGAGGTAGGCCCTGAATTTA 58.539 45.455 12.31 0.00 46.51 1.40
153 161 4.047883 ACAGAGGTAGGCCCTGAATTTAT 58.952 43.478 12.31 0.00 46.51 1.40
156 169 7.023120 ACAGAGGTAGGCCCTGAATTTATATA 58.977 38.462 12.31 0.00 46.51 0.86
162 175 8.739972 GGTAGGCCCTGAATTTATATATGTTTG 58.260 37.037 0.00 0.00 0.00 2.93
180 193 7.713734 ATGTTTGCTACCACTACTAGTAGAA 57.286 36.000 31.93 13.92 38.60 2.10
186 199 7.397221 TGCTACCACTACTAGTAGAAGTGTAA 58.603 38.462 31.93 13.84 39.17 2.41
188 201 8.901793 GCTACCACTACTAGTAGAAGTGTAAAT 58.098 37.037 31.93 12.62 39.17 1.40
199 217 4.699637 AGAAGTGTAAATTGGACGTGTGA 58.300 39.130 0.00 0.00 0.00 3.58
213 231 1.462283 CGTGTGAATCAGGCAAGAGTG 59.538 52.381 0.00 0.00 0.00 3.51
231 249 2.763448 AGTGTGAGTATCTCTGAAGCCC 59.237 50.000 0.00 0.00 34.92 5.19
261 279 4.096003 CGGACGGGCCAATGACCT 62.096 66.667 4.39 0.00 35.94 3.85
263 281 2.670148 GGACGGGCCAATGACCTCT 61.670 63.158 4.39 0.00 36.34 3.69
264 282 1.335132 GGACGGGCCAATGACCTCTA 61.335 60.000 4.39 0.00 36.34 2.43
283 301 0.108138 AGTAACATCGGCACCAGCTC 60.108 55.000 0.00 0.00 41.70 4.09
284 302 1.153647 TAACATCGGCACCAGCTCG 60.154 57.895 0.00 0.00 41.70 5.03
285 303 1.600511 TAACATCGGCACCAGCTCGA 61.601 55.000 0.00 0.00 43.76 4.04
286 304 2.584418 CATCGGCACCAGCTCGAG 60.584 66.667 8.45 8.45 43.21 4.04
287 305 2.755876 ATCGGCACCAGCTCGAGA 60.756 61.111 18.75 0.00 43.21 4.04
288 306 2.780094 ATCGGCACCAGCTCGAGAG 61.780 63.158 18.75 7.53 43.21 3.20
303 321 0.461961 GAGAGCACGGCAGTTAGGAT 59.538 55.000 0.00 0.00 0.00 3.24
307 325 1.344763 AGCACGGCAGTTAGGATATCC 59.655 52.381 14.41 14.41 0.00 2.59
309 327 2.289694 GCACGGCAGTTAGGATATCCAT 60.290 50.000 23.81 11.14 38.89 3.41
310 328 3.589988 CACGGCAGTTAGGATATCCATC 58.410 50.000 23.81 12.62 38.89 3.51
311 329 3.006859 CACGGCAGTTAGGATATCCATCA 59.993 47.826 23.81 5.61 38.89 3.07
313 331 3.997021 CGGCAGTTAGGATATCCATCAAC 59.003 47.826 23.81 20.92 38.89 3.18
314 332 3.997021 GGCAGTTAGGATATCCATCAACG 59.003 47.826 23.81 17.61 38.89 4.10
315 333 4.503296 GGCAGTTAGGATATCCATCAACGT 60.503 45.833 23.81 10.75 38.89 3.99
316 334 5.279306 GGCAGTTAGGATATCCATCAACGTA 60.279 44.000 23.81 2.60 38.89 3.57
317 335 5.864474 GCAGTTAGGATATCCATCAACGTAG 59.136 44.000 23.81 17.05 38.89 3.51
319 337 5.538813 AGTTAGGATATCCATCAACGTAGCA 59.461 40.000 23.81 0.00 38.89 3.49
320 338 4.258702 AGGATATCCATCAACGTAGCAC 57.741 45.455 23.81 0.00 38.89 4.40
321 339 3.641436 AGGATATCCATCAACGTAGCACA 59.359 43.478 23.81 0.00 38.89 4.57
322 340 4.284490 AGGATATCCATCAACGTAGCACAT 59.716 41.667 23.81 0.00 38.89 3.21
323 341 4.389992 GGATATCCATCAACGTAGCACATG 59.610 45.833 17.34 0.00 35.64 3.21
326 344 9.868489 GGATATCCATCAACGTAGCACATGCTA 62.868 44.444 17.34 9.54 43.28 3.49
337 355 2.352388 GCACATGCTAAAGTTCCGGTA 58.648 47.619 0.00 0.00 38.21 4.02
353 371 4.547671 TCCGGTATCTTCTCTTTCCAGAT 58.452 43.478 0.00 0.00 0.00 2.90
357 375 6.715718 CCGGTATCTTCTCTTTCCAGATAGTA 59.284 42.308 0.00 0.00 31.53 1.82
362 412 2.957006 TCTCTTTCCAGATAGTACCGGC 59.043 50.000 0.00 0.00 0.00 6.13
364 414 3.305720 TCTTTCCAGATAGTACCGGCAT 58.694 45.455 0.00 0.00 0.00 4.40
374 424 5.538813 AGATAGTACCGGCATTGACAAGATA 59.461 40.000 0.00 0.00 0.00 1.98
375 425 4.481368 AGTACCGGCATTGACAAGATAA 57.519 40.909 0.00 0.00 0.00 1.75
387 437 8.523523 CATTGACAAGATAAAATGCAACTGAA 57.476 30.769 0.00 0.00 0.00 3.02
391 445 9.545105 TGACAAGATAAAATGCAACTGAAAAAT 57.455 25.926 0.00 0.00 0.00 1.82
392 446 9.801714 GACAAGATAAAATGCAACTGAAAAATG 57.198 29.630 0.00 0.00 0.00 2.32
404 458 3.243839 ACTGAAAAATGAAAGCGCCATGT 60.244 39.130 2.29 0.00 0.00 3.21
408 462 4.717233 AAAATGAAAGCGCCATGTATCA 57.283 36.364 2.29 0.00 0.00 2.15
410 464 6.389830 AAAATGAAAGCGCCATGTATCATA 57.610 33.333 2.29 0.00 0.00 2.15
414 468 1.645034 AGCGCCATGTATCATATCGC 58.355 50.000 2.29 14.79 41.16 4.58
415 469 0.652592 GCGCCATGTATCATATCGCC 59.347 55.000 0.00 1.85 35.71 5.54
416 470 1.740380 GCGCCATGTATCATATCGCCT 60.740 52.381 0.00 0.00 35.71 5.52
420 495 3.181490 GCCATGTATCATATCGCCTCGTA 60.181 47.826 0.00 0.00 0.00 3.43
432 507 1.027357 GCCTCGTAGTAATCGGTGGA 58.973 55.000 0.00 0.00 0.00 4.02
433 508 1.001597 GCCTCGTAGTAATCGGTGGAG 60.002 57.143 0.00 0.00 0.00 3.86
436 511 4.070716 CCTCGTAGTAATCGGTGGAGTAT 58.929 47.826 0.00 0.00 0.00 2.12
439 514 5.311265 TCGTAGTAATCGGTGGAGTATCAT 58.689 41.667 0.00 0.00 36.25 2.45
441 516 4.258702 AGTAATCGGTGGAGTATCATGC 57.741 45.455 0.00 0.00 36.25 4.06
442 517 3.641436 AGTAATCGGTGGAGTATCATGCA 59.359 43.478 0.00 0.00 36.25 3.96
443 518 3.777106 AATCGGTGGAGTATCATGCAT 57.223 42.857 0.00 0.00 36.25 3.96
444 519 2.531522 TCGGTGGAGTATCATGCATG 57.468 50.000 21.07 21.07 36.25 4.06
445 520 0.870393 CGGTGGAGTATCATGCATGC 59.130 55.000 22.25 11.82 36.25 4.06
446 521 1.811176 CGGTGGAGTATCATGCATGCA 60.811 52.381 25.04 25.04 36.25 3.96
465 574 3.986006 GGCACGTCGTGGTCAGGA 61.986 66.667 25.70 0.00 33.64 3.86
466 575 2.028484 GCACGTCGTGGTCAGGAA 59.972 61.111 25.70 0.00 33.64 3.36
470 579 1.374252 CGTCGTGGTCAGGAAAGGG 60.374 63.158 0.00 0.00 0.00 3.95
515 632 2.106938 GATCGGTCGAGGCATGCA 59.893 61.111 21.36 0.00 0.00 3.96
518 635 4.794439 CGGTCGAGGCATGCACGA 62.794 66.667 26.67 26.67 0.00 4.35
530 652 0.179086 ATGCACGATGTCCATGCGTA 60.179 50.000 0.00 0.00 42.44 4.42
577 704 0.941463 CTCAAGCTAGCATACCGCCG 60.941 60.000 18.83 0.00 44.04 6.46
648 775 7.038659 AGCTAGCTACTACAAACAAATCAGAG 58.961 38.462 17.69 0.00 0.00 3.35
653 780 5.931441 ACTACAAACAAATCAGAGTGAGC 57.069 39.130 0.00 0.00 0.00 4.26
655 782 2.887152 ACAAACAAATCAGAGTGAGCCC 59.113 45.455 0.00 0.00 0.00 5.19
750 877 5.982465 CTGCTTAAGCTTAATCCACTCTC 57.018 43.478 26.90 3.12 42.66 3.20
751 878 4.433615 TGCTTAAGCTTAATCCACTCTCG 58.566 43.478 26.90 5.77 42.66 4.04
752 879 3.246463 GCTTAAGCTTAATCCACTCTCGC 59.754 47.826 20.38 11.59 38.21 5.03
753 880 2.317530 AAGCTTAATCCACTCTCGCC 57.682 50.000 0.00 0.00 0.00 5.54
754 881 1.490574 AGCTTAATCCACTCTCGCCT 58.509 50.000 0.00 0.00 0.00 5.52
755 882 1.410882 AGCTTAATCCACTCTCGCCTC 59.589 52.381 0.00 0.00 0.00 4.70
756 883 1.410882 GCTTAATCCACTCTCGCCTCT 59.589 52.381 0.00 0.00 0.00 3.69
757 884 2.801342 GCTTAATCCACTCTCGCCTCTG 60.801 54.545 0.00 0.00 0.00 3.35
758 885 0.747255 TAATCCACTCTCGCCTCTGC 59.253 55.000 0.00 0.00 0.00 4.26
759 886 0.975040 AATCCACTCTCGCCTCTGCT 60.975 55.000 0.00 0.00 34.43 4.24
760 887 1.391157 ATCCACTCTCGCCTCTGCTC 61.391 60.000 0.00 0.00 34.43 4.26
761 888 2.051518 CCACTCTCGCCTCTGCTCT 61.052 63.158 0.00 0.00 34.43 4.09
858 1075 4.627284 TCAGAGGAAAATTACCGGTCAA 57.373 40.909 12.40 4.46 0.00 3.18
866 1083 5.335426 GGAAAATTACCGGTCAAAAGTCTCC 60.335 44.000 12.40 0.57 0.00 3.71
921 1138 6.044682 CCTTAATAATTCCGGTCGTGTAGTT 58.955 40.000 0.00 0.00 0.00 2.24
927 1144 0.459063 CCGGTCGTGTAGTTAAGGGC 60.459 60.000 0.00 0.00 0.00 5.19
932 1149 4.700700 GGTCGTGTAGTTAAGGGCATAAT 58.299 43.478 0.00 0.00 0.00 1.28
934 1151 5.235831 GGTCGTGTAGTTAAGGGCATAATTC 59.764 44.000 0.00 0.00 0.00 2.17
960 1292 7.308408 CCCTTTTAAGTACTTGTTAGTGCCTTC 60.308 40.741 18.56 0.00 37.68 3.46
983 1315 2.357637 CGGTATAAACAACATGGCCCAG 59.642 50.000 0.00 0.00 0.00 4.45
1037 1369 9.606631 CCTAACAAACTAATGCTAGAATCTTCT 57.393 33.333 0.00 0.00 41.24 2.85
1080 1412 0.746659 AGGGAGCAAGCAAAACACAC 59.253 50.000 0.00 0.00 0.00 3.82
1088 1420 2.346099 AGCAAAACACACACACACAC 57.654 45.000 0.00 0.00 0.00 3.82
1091 1423 1.984990 CAAAACACACACACACACAGC 59.015 47.619 0.00 0.00 0.00 4.40
1128 1460 0.880278 CGTACAGCAACAGTGGCAGT 60.880 55.000 1.78 2.49 35.13 4.40
1132 1464 0.886043 CAGCAACAGTGGCAGTAGCA 60.886 55.000 1.78 0.00 44.61 3.49
1167 1499 3.855853 GAGAAGAGGCCCCCGCTC 61.856 72.222 0.00 0.00 31.02 5.03
1203 1535 0.681564 AGCGGAAGATCGTCAGGACT 60.682 55.000 10.88 0.00 0.00 3.85
1206 1538 2.034812 GCGGAAGATCGTCAGGACTATT 59.965 50.000 10.88 0.00 0.00 1.73
1208 1540 4.261489 GCGGAAGATCGTCAGGACTATTAA 60.261 45.833 10.88 0.00 0.00 1.40
1215 1547 5.068234 TCGTCAGGACTATTAACAACCTG 57.932 43.478 0.00 0.00 46.33 4.00
1222 1554 4.324267 GACTATTAACAACCTGGTGCTGT 58.676 43.478 0.00 0.00 0.00 4.40
1230 1562 1.374758 CCTGGTGCTGTCGAGGAAC 60.375 63.158 0.00 0.00 35.75 3.62
1253 1585 0.390340 GACATGGACGCAGAGAAGCA 60.390 55.000 0.00 0.00 0.00 3.91
1268 1600 4.395583 GCAAGCAGCAGGTCGCAC 62.396 66.667 0.00 0.00 46.13 5.34
1276 1608 3.114616 CAGGTCGCACCAGCTTCG 61.115 66.667 7.86 0.00 41.95 3.79
1286 1618 1.448540 CCAGCTTCGGCACCTACAG 60.449 63.158 0.00 0.00 44.74 2.74
1287 1619 2.103042 CAGCTTCGGCACCTACAGC 61.103 63.158 0.00 0.00 44.74 4.40
1289 1621 2.103042 GCTTCGGCACCTACAGCTG 61.103 63.158 13.48 13.48 41.33 4.24
1301 1633 2.094286 CCTACAGCTGAACCTCTCACAG 60.094 54.545 23.35 0.00 35.14 3.66
1341 1673 2.363788 GTGAGATACACTTGCACGGA 57.636 50.000 0.00 0.00 45.13 4.69
1342 1674 1.993370 GTGAGATACACTTGCACGGAC 59.007 52.381 0.00 0.00 45.13 4.79
1343 1675 1.616374 TGAGATACACTTGCACGGACA 59.384 47.619 0.00 0.00 0.00 4.02
1344 1676 2.263077 GAGATACACTTGCACGGACAG 58.737 52.381 0.00 0.00 0.00 3.51
1345 1677 1.618837 AGATACACTTGCACGGACAGT 59.381 47.619 0.00 0.00 0.00 3.55
1346 1678 1.993370 GATACACTTGCACGGACAGTC 59.007 52.381 0.00 0.00 0.00 3.51
1347 1679 0.318360 TACACTTGCACGGACAGTCG 60.318 55.000 0.00 0.00 0.00 4.18
1348 1680 2.029073 ACTTGCACGGACAGTCGG 59.971 61.111 6.57 6.57 0.00 4.79
1349 1681 2.338620 CTTGCACGGACAGTCGGA 59.661 61.111 14.73 0.00 0.00 4.55
1350 1682 2.022129 CTTGCACGGACAGTCGGAC 61.022 63.158 14.73 0.00 0.00 4.79
1353 1685 2.049433 CACGGACAGTCGGACACC 60.049 66.667 14.73 9.50 0.00 4.16
1357 1689 2.603776 GACAGTCGGACACCCCCT 60.604 66.667 11.27 0.00 0.00 4.79
1359 1691 2.168666 GACAGTCGGACACCCCCTTC 62.169 65.000 11.27 0.00 0.00 3.46
1369 1701 2.222013 ACCCCCTTCCCGTCAGAAC 61.222 63.158 0.00 0.00 0.00 3.01
1398 1731 3.075884 GGTTTACTACCGCACATTCCAA 58.924 45.455 0.00 0.00 37.12 3.53
1407 1740 1.657094 CGCACATTCCAACGGTACTAC 59.343 52.381 0.00 0.00 0.00 2.73
1408 1741 1.657094 GCACATTCCAACGGTACTACG 59.343 52.381 0.00 0.00 40.31 3.51
1430 1763 2.113986 GTGTTGCAGCTCAGGGGT 59.886 61.111 1.17 0.00 0.00 4.95
1439 1772 1.214175 CAGCTCAGGGGTCTAGAGAGA 59.786 57.143 9.51 0.00 0.00 3.10
1469 1802 1.380785 CAGGGGATTGTGGCAGCAT 60.381 57.895 0.00 0.00 0.00 3.79
1499 1832 2.815478 GGTACTTCCGCTTGATGAGAG 58.185 52.381 0.00 0.00 0.00 3.20
1501 1834 0.610174 ACTTCCGCTTGATGAGAGCA 59.390 50.000 0.00 0.00 40.13 4.26
1534 1867 3.958147 AAGCCGTAGTGCTGCGCAT 62.958 57.895 12.24 0.00 41.80 4.73
1538 1871 1.884464 CGTAGTGCTGCGCATCCAT 60.884 57.895 12.24 0.00 41.91 3.41
1542 1875 1.213537 GTGCTGCGCATCCATTGTT 59.786 52.632 12.24 0.00 41.91 2.83
1546 1879 2.202783 GCGCATCCATTGTTGCCC 60.203 61.111 0.30 0.00 34.37 5.36
1555 1888 0.608035 CATTGTTGCCCTACCACCGT 60.608 55.000 0.00 0.00 0.00 4.83
1568 1901 1.083657 CACCGTTGAAAGCGTGACG 60.084 57.895 0.00 0.00 35.44 4.35
1570 1903 2.549282 CGTTGAAAGCGTGACGGG 59.451 61.111 7.25 0.00 32.29 5.28
1571 1904 1.952133 CGTTGAAAGCGTGACGGGA 60.952 57.895 7.25 0.00 32.29 5.14
1572 1905 1.289109 CGTTGAAAGCGTGACGGGAT 61.289 55.000 7.25 0.00 32.29 3.85
1573 1906 0.442699 GTTGAAAGCGTGACGGGATC 59.557 55.000 7.25 0.00 0.00 3.36
1574 1907 0.034198 TTGAAAGCGTGACGGGATCA 59.966 50.000 7.25 0.00 33.79 2.92
1604 1937 1.670791 AAAAAGAAAGCGTGACGGGA 58.329 45.000 7.25 0.00 0.00 5.14
1605 1938 1.892209 AAAAGAAAGCGTGACGGGAT 58.108 45.000 7.25 0.00 0.00 3.85
1606 1939 1.439679 AAAGAAAGCGTGACGGGATC 58.560 50.000 7.25 0.00 0.00 3.36
1607 1940 0.391263 AAGAAAGCGTGACGGGATCC 60.391 55.000 7.25 1.92 0.00 3.36
1608 1941 1.218316 GAAAGCGTGACGGGATCCT 59.782 57.895 12.58 0.00 0.00 3.24
1609 1942 1.079127 AAAGCGTGACGGGATCCTG 60.079 57.895 19.66 19.66 0.00 3.86
1610 1943 1.541310 AAAGCGTGACGGGATCCTGA 61.541 55.000 27.90 2.20 0.00 3.86
1611 1944 1.541310 AAGCGTGACGGGATCCTGAA 61.541 55.000 27.90 11.91 0.00 3.02
1612 1945 1.519455 GCGTGACGGGATCCTGAAG 60.519 63.158 27.90 14.75 0.00 3.02
1613 1946 1.519455 CGTGACGGGATCCTGAAGC 60.519 63.158 27.90 15.37 0.00 3.86
1614 1947 1.596934 GTGACGGGATCCTGAAGCA 59.403 57.895 27.90 17.65 0.00 3.91
1615 1948 0.036388 GTGACGGGATCCTGAAGCAA 60.036 55.000 27.90 4.58 0.00 3.91
1616 1949 0.911769 TGACGGGATCCTGAAGCAAT 59.088 50.000 27.90 2.80 0.00 3.56
1617 1950 1.281867 TGACGGGATCCTGAAGCAATT 59.718 47.619 27.90 1.97 0.00 2.32
1628 1961 3.373001 CCTGAAGCAATTGGATAAGGGGA 60.373 47.826 7.72 0.00 0.00 4.81
1629 1962 4.280819 CTGAAGCAATTGGATAAGGGGAA 58.719 43.478 7.72 0.00 0.00 3.97
1630 1963 4.280819 TGAAGCAATTGGATAAGGGGAAG 58.719 43.478 7.72 0.00 0.00 3.46
1631 1964 4.264352 TGAAGCAATTGGATAAGGGGAAGT 60.264 41.667 7.72 0.00 0.00 3.01
1632 1965 3.903467 AGCAATTGGATAAGGGGAAGTC 58.097 45.455 7.72 0.00 0.00 3.01
1633 1966 2.618709 GCAATTGGATAAGGGGAAGTCG 59.381 50.000 7.72 0.00 0.00 4.18
1640 2108 2.905415 TAAGGGGAAGTCGAGTGGTA 57.095 50.000 0.00 0.00 0.00 3.25
1641 2109 1.558233 AAGGGGAAGTCGAGTGGTAG 58.442 55.000 0.00 0.00 0.00 3.18
1647 2115 2.351111 GGAAGTCGAGTGGTAGTAGTCG 59.649 54.545 0.00 0.00 43.13 4.18
1651 2119 1.726265 GAGTGGTAGTAGTCGGGCG 59.274 63.158 0.00 0.00 0.00 6.13
1652 2120 1.722636 GAGTGGTAGTAGTCGGGCGG 61.723 65.000 0.00 0.00 0.00 6.13
1654 2122 0.748005 GTGGTAGTAGTCGGGCGGTA 60.748 60.000 0.00 0.00 0.00 4.02
1656 2124 0.464554 GGTAGTAGTCGGGCGGTACT 60.465 60.000 0.00 0.00 0.00 2.73
1657 2125 1.202651 GGTAGTAGTCGGGCGGTACTA 60.203 57.143 0.00 0.00 0.00 1.82
1658 2126 1.867865 GTAGTAGTCGGGCGGTACTAC 59.132 57.143 18.24 18.24 45.49 2.73
1659 2127 3.086733 GTAGTCGGGCGGTACTACT 57.913 57.895 18.45 7.90 43.05 2.57
1660 2128 0.659957 GTAGTCGGGCGGTACTACTG 59.340 60.000 18.45 0.00 43.05 2.74
1666 2134 2.488355 GCGGTACTACTGCTCGCA 59.512 61.111 12.15 0.00 46.62 5.10
1667 2135 1.872679 GCGGTACTACTGCTCGCAC 60.873 63.158 12.15 0.00 46.62 5.34
1668 2136 1.801332 CGGTACTACTGCTCGCACT 59.199 57.895 0.00 0.00 0.00 4.40
1669 2137 1.012086 CGGTACTACTGCTCGCACTA 58.988 55.000 0.00 0.00 0.00 2.74
1670 2138 1.267932 CGGTACTACTGCTCGCACTAC 60.268 57.143 0.00 0.00 0.00 2.73
1671 2139 1.065251 GGTACTACTGCTCGCACTACC 59.935 57.143 0.00 0.00 0.00 3.18
1672 2140 1.741706 GTACTACTGCTCGCACTACCA 59.258 52.381 0.00 0.00 0.00 3.25
1673 2141 1.475403 ACTACTGCTCGCACTACCAT 58.525 50.000 0.00 0.00 0.00 3.55
1674 2142 1.825474 ACTACTGCTCGCACTACCATT 59.175 47.619 0.00 0.00 0.00 3.16
1675 2143 2.233922 ACTACTGCTCGCACTACCATTT 59.766 45.455 0.00 0.00 0.00 2.32
1676 2144 2.185004 ACTGCTCGCACTACCATTTT 57.815 45.000 0.00 0.00 0.00 1.82
1677 2145 2.504367 ACTGCTCGCACTACCATTTTT 58.496 42.857 0.00 0.00 0.00 1.94
1678 2146 2.484264 ACTGCTCGCACTACCATTTTTC 59.516 45.455 0.00 0.00 0.00 2.29
1679 2147 2.744202 CTGCTCGCACTACCATTTTTCT 59.256 45.455 0.00 0.00 0.00 2.52
1680 2148 3.146066 TGCTCGCACTACCATTTTTCTT 58.854 40.909 0.00 0.00 0.00 2.52
1681 2149 3.188460 TGCTCGCACTACCATTTTTCTTC 59.812 43.478 0.00 0.00 0.00 2.87
1682 2150 3.426292 GCTCGCACTACCATTTTTCTTCC 60.426 47.826 0.00 0.00 0.00 3.46
1683 2151 2.739913 TCGCACTACCATTTTTCTTCCG 59.260 45.455 0.00 0.00 0.00 4.30
1684 2152 2.727916 CGCACTACCATTTTTCTTCCGC 60.728 50.000 0.00 0.00 0.00 5.54
1685 2153 2.488153 GCACTACCATTTTTCTTCCGCT 59.512 45.455 0.00 0.00 0.00 5.52
1686 2154 3.426292 GCACTACCATTTTTCTTCCGCTC 60.426 47.826 0.00 0.00 0.00 5.03
1687 2155 3.751175 CACTACCATTTTTCTTCCGCTCA 59.249 43.478 0.00 0.00 0.00 4.26
1688 2156 4.215399 CACTACCATTTTTCTTCCGCTCAA 59.785 41.667 0.00 0.00 0.00 3.02
1689 2157 3.643159 ACCATTTTTCTTCCGCTCAAC 57.357 42.857 0.00 0.00 0.00 3.18
1690 2158 2.296190 ACCATTTTTCTTCCGCTCAACC 59.704 45.455 0.00 0.00 0.00 3.77
1691 2159 2.352715 CCATTTTTCTTCCGCTCAACCC 60.353 50.000 0.00 0.00 0.00 4.11
1692 2160 0.948678 TTTTTCTTCCGCTCAACCCG 59.051 50.000 0.00 0.00 0.00 5.28
1693 2161 0.107081 TTTTCTTCCGCTCAACCCGA 59.893 50.000 0.00 0.00 0.00 5.14
1694 2162 0.601841 TTTCTTCCGCTCAACCCGAC 60.602 55.000 0.00 0.00 0.00 4.79
1695 2163 1.750341 TTCTTCCGCTCAACCCGACA 61.750 55.000 0.00 0.00 0.00 4.35
1696 2164 1.079127 CTTCCGCTCAACCCGACAT 60.079 57.895 0.00 0.00 0.00 3.06
1697 2165 1.361668 CTTCCGCTCAACCCGACATG 61.362 60.000 0.00 0.00 0.00 3.21
1698 2166 1.822114 TTCCGCTCAACCCGACATGA 61.822 55.000 0.00 0.00 0.00 3.07
1699 2167 1.375396 CCGCTCAACCCGACATGAA 60.375 57.895 0.00 0.00 0.00 2.57
1700 2168 0.953471 CCGCTCAACCCGACATGAAA 60.953 55.000 0.00 0.00 0.00 2.69
1701 2169 0.871722 CGCTCAACCCGACATGAAAA 59.128 50.000 0.00 0.00 0.00 2.29
1702 2170 1.135972 CGCTCAACCCGACATGAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
1703 2171 1.880027 GCTCAACCCGACATGAAAAGT 59.120 47.619 0.00 0.00 0.00 2.66
1704 2172 2.095718 GCTCAACCCGACATGAAAAGTC 60.096 50.000 0.00 0.00 0.00 3.01
1721 2189 2.344950 AGTCGAGTCGTGATACGTCTT 58.655 47.619 13.12 0.00 39.83 3.01
1844 3432 0.850784 ACTAACCAAAGGCCCAGTGT 59.149 50.000 0.00 0.00 0.00 3.55
2102 4711 7.048090 TCCTATATATACCCATATACCCCGG 57.952 44.000 0.00 0.00 33.41 5.73
2112 4721 3.010138 CCATATACCCCGGAAACATCCAT 59.990 47.826 0.73 0.00 0.00 3.41
2113 4722 2.951229 ATACCCCGGAAACATCCATC 57.049 50.000 0.73 0.00 0.00 3.51
2123 4732 0.677731 AACATCCATCAGCACCACGG 60.678 55.000 0.00 0.00 0.00 4.94
2128 4737 1.003355 CATCAGCACCACGGAACCT 60.003 57.895 0.00 0.00 0.00 3.50
2134 4743 2.556622 CAGCACCACGGAACCTTATTTT 59.443 45.455 0.00 0.00 0.00 1.82
2145 4754 2.159382 ACCTTATTTTCACCACCGCAG 58.841 47.619 0.00 0.00 0.00 5.18
2147 4756 1.812571 CTTATTTTCACCACCGCAGCT 59.187 47.619 0.00 0.00 0.00 4.24
2219 4829 0.322008 GGGGAATCGATCATGGAGGC 60.322 60.000 0.00 0.00 0.00 4.70
2220 4830 0.689623 GGGAATCGATCATGGAGGCT 59.310 55.000 0.00 0.00 0.00 4.58
2222 4832 2.421619 GGAATCGATCATGGAGGCTTC 58.578 52.381 0.00 0.00 0.00 3.86
2223 4833 2.038295 GGAATCGATCATGGAGGCTTCT 59.962 50.000 0.00 0.00 0.00 2.85
2224 4834 2.835580 ATCGATCATGGAGGCTTCTG 57.164 50.000 0.00 0.00 0.00 3.02
2240 4855 3.620966 GCTTCTGAACACCATAGCCTCTT 60.621 47.826 0.00 0.00 0.00 2.85
2245 4860 3.958147 TGAACACCATAGCCTCTTCGATA 59.042 43.478 0.00 0.00 0.00 2.92
2257 4872 5.303078 AGCCTCTTCGATAATGTGTGAGTAT 59.697 40.000 0.00 0.00 0.00 2.12
2270 4885 5.919755 TGTGTGAGTATTTTACCACAGACA 58.080 37.500 0.00 0.00 39.10 3.41
2298 4913 6.377429 CGGGTCCATAGTTATTAGCTAGATGA 59.623 42.308 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.509970 TGTCAGTCGTGGACACAAAAATAG 59.490 41.667 3.12 0.00 40.16 1.73
1 2 4.443621 TGTCAGTCGTGGACACAAAAATA 58.556 39.130 3.12 0.00 40.16 1.40
2 3 3.275143 TGTCAGTCGTGGACACAAAAAT 58.725 40.909 3.12 0.00 40.16 1.82
3 4 2.675844 CTGTCAGTCGTGGACACAAAAA 59.324 45.455 3.12 0.00 40.16 1.94
4 5 2.093921 TCTGTCAGTCGTGGACACAAAA 60.094 45.455 0.00 0.00 40.16 2.44
5 6 1.478916 TCTGTCAGTCGTGGACACAAA 59.521 47.619 0.00 0.00 40.16 2.83
6 7 1.107945 TCTGTCAGTCGTGGACACAA 58.892 50.000 0.00 0.00 40.16 3.33
7 8 1.107945 TTCTGTCAGTCGTGGACACA 58.892 50.000 0.00 0.00 40.16 3.72
8 9 2.218953 TTTCTGTCAGTCGTGGACAC 57.781 50.000 0.00 0.00 40.16 3.67
9 10 2.971660 TTTTCTGTCAGTCGTGGACA 57.028 45.000 0.00 0.00 42.62 4.02
39 40 9.686683 ACCTAGCATAAGTTTCAAAGACATAAT 57.313 29.630 0.00 0.00 0.00 1.28
40 41 8.946085 CACCTAGCATAAGTTTCAAAGACATAA 58.054 33.333 0.00 0.00 0.00 1.90
41 42 8.100791 ACACCTAGCATAAGTTTCAAAGACATA 58.899 33.333 0.00 0.00 0.00 2.29
42 43 6.942576 ACACCTAGCATAAGTTTCAAAGACAT 59.057 34.615 0.00 0.00 0.00 3.06
43 44 6.296026 ACACCTAGCATAAGTTTCAAAGACA 58.704 36.000 0.00 0.00 0.00 3.41
44 45 6.426937 TGACACCTAGCATAAGTTTCAAAGAC 59.573 38.462 0.00 0.00 0.00 3.01
45 46 6.530120 TGACACCTAGCATAAGTTTCAAAGA 58.470 36.000 0.00 0.00 0.00 2.52
46 47 6.128172 CCTGACACCTAGCATAAGTTTCAAAG 60.128 42.308 0.00 0.00 0.00 2.77
47 48 5.705441 CCTGACACCTAGCATAAGTTTCAAA 59.295 40.000 0.00 0.00 0.00 2.69
48 49 5.221843 ACCTGACACCTAGCATAAGTTTCAA 60.222 40.000 0.00 0.00 0.00 2.69
49 50 4.286032 ACCTGACACCTAGCATAAGTTTCA 59.714 41.667 0.00 0.00 0.00 2.69
50 51 4.631813 CACCTGACACCTAGCATAAGTTTC 59.368 45.833 0.00 0.00 0.00 2.78
51 52 4.565652 CCACCTGACACCTAGCATAAGTTT 60.566 45.833 0.00 0.00 0.00 2.66
52 53 3.055094 CCACCTGACACCTAGCATAAGTT 60.055 47.826 0.00 0.00 0.00 2.66
53 54 2.501723 CCACCTGACACCTAGCATAAGT 59.498 50.000 0.00 0.00 0.00 2.24
54 55 2.766263 TCCACCTGACACCTAGCATAAG 59.234 50.000 0.00 0.00 0.00 1.73
55 56 2.766263 CTCCACCTGACACCTAGCATAA 59.234 50.000 0.00 0.00 0.00 1.90
56 57 2.292257 ACTCCACCTGACACCTAGCATA 60.292 50.000 0.00 0.00 0.00 3.14
57 58 1.198713 CTCCACCTGACACCTAGCAT 58.801 55.000 0.00 0.00 0.00 3.79
58 59 0.178932 ACTCCACCTGACACCTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
59 60 0.247736 CACTCCACCTGACACCTAGC 59.752 60.000 0.00 0.00 0.00 3.42
60 61 1.273606 CACACTCCACCTGACACCTAG 59.726 57.143 0.00 0.00 0.00 3.02
61 62 1.338107 CACACTCCACCTGACACCTA 58.662 55.000 0.00 0.00 0.00 3.08
75 76 1.911357 TGCCTTGATCTGATCCACACT 59.089 47.619 14.71 0.00 0.00 3.55
85 86 1.211457 CCCTGCTTAGTGCCTTGATCT 59.789 52.381 0.00 0.00 42.00 2.75
122 123 3.506455 GGGCCTACCTCTGTTTCTTTTTC 59.494 47.826 0.84 0.00 35.85 2.29
136 144 8.739972 CAAACATATATAAATTCAGGGCCTACC 58.260 37.037 5.28 0.00 40.67 3.18
156 169 7.396623 ACTTCTACTAGTAGTGGTAGCAAACAT 59.603 37.037 25.58 1.35 37.60 2.71
162 175 7.856145 TTACACTTCTACTAGTAGTGGTAGC 57.144 40.000 25.58 0.00 44.66 3.58
175 188 5.693104 TCACACGTCCAATTTACACTTCTAC 59.307 40.000 0.00 0.00 0.00 2.59
180 193 5.060506 TGATTCACACGTCCAATTTACACT 58.939 37.500 0.00 0.00 0.00 3.55
186 199 1.812571 GCCTGATTCACACGTCCAATT 59.187 47.619 0.00 0.00 0.00 2.32
188 201 0.107643 TGCCTGATTCACACGTCCAA 59.892 50.000 0.00 0.00 0.00 3.53
189 202 0.107643 TTGCCTGATTCACACGTCCA 59.892 50.000 0.00 0.00 0.00 4.02
190 203 0.798776 CTTGCCTGATTCACACGTCC 59.201 55.000 0.00 0.00 0.00 4.79
199 217 4.469227 AGATACTCACACTCTTGCCTGATT 59.531 41.667 0.00 0.00 0.00 2.57
213 231 1.414550 GGGGGCTTCAGAGATACTCAC 59.585 57.143 0.00 0.00 32.06 3.51
239 257 4.404098 ATTGGCCCGTCCGTCCAC 62.404 66.667 0.00 0.00 37.80 4.02
241 259 4.090588 TCATTGGCCCGTCCGTCC 62.091 66.667 0.00 0.00 37.80 4.79
242 260 2.818274 GTCATTGGCCCGTCCGTC 60.818 66.667 0.00 0.00 37.80 4.79
243 261 4.404098 GGTCATTGGCCCGTCCGT 62.404 66.667 0.00 0.00 37.80 4.69
244 262 4.096003 AGGTCATTGGCCCGTCCG 62.096 66.667 3.00 0.00 37.80 4.79
249 267 2.504175 TGTTACTAGAGGTCATTGGCCC 59.496 50.000 3.00 0.00 0.00 5.80
261 279 1.136305 GCTGGTGCCGATGTTACTAGA 59.864 52.381 0.00 0.00 0.00 2.43
263 281 1.136305 GAGCTGGTGCCGATGTTACTA 59.864 52.381 0.00 0.00 40.80 1.82
264 282 0.108138 GAGCTGGTGCCGATGTTACT 60.108 55.000 0.00 0.00 40.80 2.24
283 301 1.517257 CCTAACTGCCGTGCTCTCG 60.517 63.158 0.00 0.00 0.00 4.04
284 302 0.461961 ATCCTAACTGCCGTGCTCTC 59.538 55.000 0.00 0.00 0.00 3.20
285 303 1.776662 TATCCTAACTGCCGTGCTCT 58.223 50.000 0.00 0.00 0.00 4.09
286 304 2.610727 GGATATCCTAACTGCCGTGCTC 60.611 54.545 14.97 0.00 0.00 4.26
287 305 1.344763 GGATATCCTAACTGCCGTGCT 59.655 52.381 14.97 0.00 0.00 4.40
288 306 1.070134 TGGATATCCTAACTGCCGTGC 59.930 52.381 22.35 0.00 36.82 5.34
289 307 3.006859 TGATGGATATCCTAACTGCCGTG 59.993 47.826 22.35 0.00 36.82 4.94
303 321 3.130633 GCATGTGCTACGTTGATGGATA 58.869 45.455 0.00 0.00 38.21 2.59
317 335 1.165270 ACCGGAACTTTAGCATGTGC 58.835 50.000 9.46 0.00 42.49 4.57
319 337 4.755266 AGATACCGGAACTTTAGCATGT 57.245 40.909 9.46 0.00 0.00 3.21
320 338 5.360591 AGAAGATACCGGAACTTTAGCATG 58.639 41.667 9.46 0.00 0.00 4.06
321 339 5.364157 AGAGAAGATACCGGAACTTTAGCAT 59.636 40.000 9.46 0.00 0.00 3.79
322 340 4.710375 AGAGAAGATACCGGAACTTTAGCA 59.290 41.667 9.46 0.00 0.00 3.49
323 341 5.265350 AGAGAAGATACCGGAACTTTAGC 57.735 43.478 9.46 0.00 0.00 3.09
326 344 5.012768 TGGAAAGAGAAGATACCGGAACTTT 59.987 40.000 9.46 7.46 0.00 2.66
328 346 4.094476 TGGAAAGAGAAGATACCGGAACT 58.906 43.478 9.46 0.44 0.00 3.01
330 348 4.350245 TCTGGAAAGAGAAGATACCGGAA 58.650 43.478 9.46 0.00 31.14 4.30
337 355 5.536916 CCGGTACTATCTGGAAAGAGAAGAT 59.463 44.000 0.00 0.00 36.02 2.40
353 371 5.601583 TTATCTTGTCAATGCCGGTACTA 57.398 39.130 1.90 0.00 0.00 1.82
357 375 4.677779 GCATTTTATCTTGTCAATGCCGGT 60.678 41.667 1.90 0.00 43.80 5.28
362 412 8.523523 TTCAGTTGCATTTTATCTTGTCAATG 57.476 30.769 0.00 0.00 0.00 2.82
364 414 8.939201 TTTTCAGTTGCATTTTATCTTGTCAA 57.061 26.923 0.00 0.00 0.00 3.18
374 424 6.193761 CGCTTTCATTTTTCAGTTGCATTTT 58.806 32.000 0.00 0.00 0.00 1.82
375 425 5.740406 CGCTTTCATTTTTCAGTTGCATTT 58.260 33.333 0.00 0.00 0.00 2.32
387 437 4.717233 TGATACATGGCGCTTTCATTTT 57.283 36.364 7.64 0.00 0.00 1.82
391 445 3.679502 CGATATGATACATGGCGCTTTCA 59.320 43.478 7.64 0.00 0.00 2.69
392 446 3.484229 GCGATATGATACATGGCGCTTTC 60.484 47.826 7.64 0.00 39.84 2.62
404 458 5.235831 CCGATTACTACGAGGCGATATGATA 59.764 44.000 0.00 0.00 0.00 2.15
408 462 3.126514 CACCGATTACTACGAGGCGATAT 59.873 47.826 0.00 0.00 0.00 1.63
410 464 1.266175 CACCGATTACTACGAGGCGAT 59.734 52.381 0.00 0.00 0.00 4.58
414 468 2.295885 ACTCCACCGATTACTACGAGG 58.704 52.381 0.00 0.00 0.00 4.63
415 469 4.753610 TGATACTCCACCGATTACTACGAG 59.246 45.833 0.00 0.00 0.00 4.18
416 470 4.707105 TGATACTCCACCGATTACTACGA 58.293 43.478 0.00 0.00 0.00 3.43
420 495 3.641436 TGCATGATACTCCACCGATTACT 59.359 43.478 0.00 0.00 0.00 2.24
442 517 3.126879 CCACGACGTGCCATGCAT 61.127 61.111 22.46 0.00 41.91 3.96
443 518 4.617520 ACCACGACGTGCCATGCA 62.618 61.111 22.46 0.00 35.60 3.96
444 519 3.788766 GACCACGACGTGCCATGC 61.789 66.667 22.46 5.39 31.34 4.06
445 520 2.356913 TGACCACGACGTGCCATG 60.357 61.111 22.46 11.15 31.34 3.66
446 521 2.048222 CTGACCACGACGTGCCAT 60.048 61.111 22.46 9.76 31.34 4.40
499 616 2.202932 GTGCATGCCTCGACCGAT 60.203 61.111 16.68 0.00 0.00 4.18
503 620 1.756375 GACATCGTGCATGCCTCGAC 61.756 60.000 28.03 14.74 35.65 4.20
504 621 1.519234 GACATCGTGCATGCCTCGA 60.519 57.895 27.77 27.77 35.65 4.04
505 622 2.528743 GGACATCGTGCATGCCTCG 61.529 63.158 16.68 19.30 35.65 4.63
506 623 0.816825 ATGGACATCGTGCATGCCTC 60.817 55.000 16.68 7.58 42.67 4.70
508 625 3.831883 ATGGACATCGTGCATGCC 58.168 55.556 16.68 5.63 42.67 4.40
514 631 0.301687 GCTTACGCATGGACATCGTG 59.698 55.000 15.12 6.80 37.61 4.35
515 632 0.810031 GGCTTACGCATGGACATCGT 60.810 55.000 12.04 12.04 39.88 3.73
518 635 4.124910 CGGCTTACGCATGGACAT 57.875 55.556 0.00 0.00 38.10 3.06
639 766 2.630158 CTCAGGGCTCACTCTGATTTG 58.370 52.381 0.00 0.00 39.04 2.32
641 768 0.540923 GCTCAGGGCTCACTCTGATT 59.459 55.000 0.00 0.00 39.04 2.57
648 775 3.695606 TGACGGCTCAGGGCTCAC 61.696 66.667 0.00 0.00 41.46 3.51
653 780 2.262915 GTGAGTGACGGCTCAGGG 59.737 66.667 6.81 0.00 45.03 4.45
757 884 3.314635 CACCAGATTATTCAGCCAAGAGC 59.685 47.826 0.00 0.00 44.25 4.09
758 885 3.881688 CCACCAGATTATTCAGCCAAGAG 59.118 47.826 0.00 0.00 0.00 2.85
759 886 3.266772 ACCACCAGATTATTCAGCCAAGA 59.733 43.478 0.00 0.00 0.00 3.02
760 887 3.624777 ACCACCAGATTATTCAGCCAAG 58.375 45.455 0.00 0.00 0.00 3.61
761 888 3.737559 ACCACCAGATTATTCAGCCAA 57.262 42.857 0.00 0.00 0.00 4.52
807 1018 9.656323 ACTGATACTACTCTATTTTGGGTATCA 57.344 33.333 0.00 0.00 40.51 2.15
841 1058 5.382616 AGACTTTTGACCGGTAATTTTCCT 58.617 37.500 7.34 0.00 0.00 3.36
843 1060 5.239963 TGGAGACTTTTGACCGGTAATTTTC 59.760 40.000 7.34 0.00 0.00 2.29
858 1075 4.978099 TCTTTGAAGCATCTGGAGACTTT 58.022 39.130 0.00 0.00 0.00 2.66
866 1083 2.159282 GGGTGCATCTTTGAAGCATCTG 60.159 50.000 7.74 0.00 38.49 2.90
932 1149 6.487668 GGCACTAACAAGTACTTAAAAGGGAA 59.512 38.462 8.04 0.00 0.00 3.97
934 1151 6.002082 AGGCACTAACAAGTACTTAAAAGGG 58.998 40.000 8.04 7.85 36.02 3.95
937 1154 7.254522 CGTGAAGGCACTAACAAGTACTTAAAA 60.255 37.037 8.04 0.00 42.93 1.52
940 1157 5.224888 CGTGAAGGCACTAACAAGTACTTA 58.775 41.667 8.04 0.00 42.93 2.24
960 1292 2.098443 GGGCCATGTTGTTTATACCGTG 59.902 50.000 4.39 0.00 0.00 4.94
967 1299 2.524306 CCTTCTGGGCCATGTTGTTTA 58.476 47.619 6.72 0.00 0.00 2.01
969 1301 3.056213 CCTTCTGGGCCATGTTGTT 57.944 52.632 6.72 0.00 0.00 2.83
983 1315 1.981256 TTTGACCACTTCTGGCCTTC 58.019 50.000 3.32 0.00 42.08 3.46
1000 1332 7.364673 GCATTAGTTTGTTAGGGGGAATCATTT 60.365 37.037 0.00 0.00 0.00 2.32
1037 1369 5.164620 TGCTTAATGTGAAGAGGACATGA 57.835 39.130 0.00 0.00 34.22 3.07
1080 1412 2.330393 GCTGCAGCTGTGTGTGTG 59.670 61.111 31.33 0.00 38.21 3.82
1088 1420 3.518998 GCTCCATGGCTGCAGCTG 61.519 66.667 35.82 26.74 41.70 4.24
1091 1423 2.045242 AGTGCTCCATGGCTGCAG 60.045 61.111 25.54 10.11 37.39 4.41
1106 1438 0.600255 GCCACTGTTGCTGTACGAGT 60.600 55.000 0.00 0.00 0.00 4.18
1132 1464 3.419759 CTTTGCGCCGCCGTAGTT 61.420 61.111 6.63 0.00 36.67 2.24
1167 1499 1.378250 CTTCAGCTGCCCCCTCTTG 60.378 63.158 9.47 0.00 0.00 3.02
1189 1521 6.154706 AGGTTGTTAATAGTCCTGACGATCTT 59.845 38.462 0.00 0.00 36.20 2.40
1203 1535 3.007074 TCGACAGCACCAGGTTGTTAATA 59.993 43.478 0.00 0.00 41.41 0.98
1206 1538 0.753867 TCGACAGCACCAGGTTGTTA 59.246 50.000 0.00 0.00 41.41 2.41
1208 1540 1.069765 CTCGACAGCACCAGGTTGT 59.930 57.895 0.00 0.00 44.28 3.32
1215 1547 2.649034 TCGTTCCTCGACAGCACC 59.351 61.111 0.00 0.00 44.01 5.01
1230 1562 0.101219 TCTCTGCGTCCATGTCATCG 59.899 55.000 0.00 0.00 0.00 3.84
1233 1565 0.390340 GCTTCTCTGCGTCCATGTCA 60.390 55.000 0.00 0.00 0.00 3.58
1253 1585 4.254709 TGGTGCGACCTGCTGCTT 62.255 61.111 0.00 0.00 46.63 3.91
1268 1600 1.448540 CTGTAGGTGCCGAAGCTGG 60.449 63.158 0.00 0.00 40.80 4.85
1276 1608 0.391793 GAGGTTCAGCTGTAGGTGCC 60.392 60.000 14.67 8.04 42.77 5.01
1287 1619 0.972134 TGAGGCTGTGAGAGGTTCAG 59.028 55.000 0.00 0.00 36.21 3.02
1289 1621 2.037772 TCTTTGAGGCTGTGAGAGGTTC 59.962 50.000 0.00 0.00 0.00 3.62
1301 1633 1.272781 CTCGATGTCGTCTTTGAGGC 58.727 55.000 2.04 0.00 40.80 4.70
1334 1666 3.220658 TGTCCGACTGTCCGTGCA 61.221 61.111 1.55 0.00 0.00 4.57
1339 1671 3.703127 GGGGGTGTCCGACTGTCC 61.703 72.222 1.55 0.42 36.01 4.02
1341 1673 2.122547 AAGGGGGTGTCCGACTGT 60.123 61.111 0.00 0.00 36.01 3.55
1342 1674 2.663196 GAAGGGGGTGTCCGACTG 59.337 66.667 0.00 0.00 36.01 3.51
1343 1675 2.606826 GGAAGGGGGTGTCCGACT 60.607 66.667 0.00 0.00 36.01 4.18
1344 1676 3.714001 GGGAAGGGGGTGTCCGAC 61.714 72.222 0.00 0.00 34.47 4.79
1347 1679 3.714001 GACGGGAAGGGGGTGTCC 61.714 72.222 0.00 0.00 0.00 4.02
1348 1680 2.926242 TGACGGGAAGGGGGTGTC 60.926 66.667 0.00 0.00 0.00 3.67
1349 1681 2.928396 CTGACGGGAAGGGGGTGT 60.928 66.667 0.00 0.00 0.00 4.16
1350 1682 2.221299 TTCTGACGGGAAGGGGGTG 61.221 63.158 0.00 0.00 0.00 4.61
1353 1685 1.192146 TCAGTTCTGACGGGAAGGGG 61.192 60.000 0.00 0.00 0.00 4.79
1357 1689 2.168496 CCTAGTCAGTTCTGACGGGAA 58.832 52.381 26.61 15.35 43.15 3.97
1359 1691 0.818296 CCCTAGTCAGTTCTGACGGG 59.182 60.000 25.20 25.20 43.15 5.28
1362 1694 5.725325 AGTAAACCCTAGTCAGTTCTGAC 57.275 43.478 21.03 21.03 39.00 3.51
1369 1701 2.756760 TGCGGTAGTAAACCCTAGTCAG 59.243 50.000 0.00 0.00 46.62 3.51
1390 1723 1.895131 ACCGTAGTACCGTTGGAATGT 59.105 47.619 0.00 0.00 0.00 2.71
1393 1726 1.000731 CCAACCGTAGTACCGTTGGAA 59.999 52.381 32.88 0.00 45.21 3.53
1394 1727 0.602562 CCAACCGTAGTACCGTTGGA 59.397 55.000 32.88 0.00 45.21 3.53
1398 1731 1.039856 AACACCAACCGTAGTACCGT 58.960 50.000 0.00 0.00 0.00 4.83
1401 1734 1.796459 CTGCAACACCAACCGTAGTAC 59.204 52.381 0.00 0.00 0.00 2.73
1407 1740 2.121564 CTGAGCTGCAACACCAACCG 62.122 60.000 1.02 0.00 0.00 4.44
1408 1741 1.656441 CTGAGCTGCAACACCAACC 59.344 57.895 1.02 0.00 0.00 3.77
1414 1747 0.835971 TAGACCCCTGAGCTGCAACA 60.836 55.000 1.02 0.62 0.00 3.33
1430 1763 3.244805 TGTTCTTGTCCCGTCTCTCTAGA 60.245 47.826 0.00 0.00 0.00 2.43
1439 1772 0.840722 ATCCCCTGTTCTTGTCCCGT 60.841 55.000 0.00 0.00 0.00 5.28
1442 1775 2.162681 CACAATCCCCTGTTCTTGTCC 58.837 52.381 0.00 0.00 29.74 4.02
1444 1777 1.823250 GCCACAATCCCCTGTTCTTGT 60.823 52.381 0.00 0.00 32.27 3.16
1469 1802 2.624169 GGAAGTACCGCTGTTGCAA 58.376 52.632 0.00 0.00 39.64 4.08
1499 1832 3.177487 GGCTTGTAAGTCGTAGTACTGC 58.823 50.000 5.39 2.60 0.00 4.40
1534 1867 0.039035 GGTGGTAGGGCAACAATGGA 59.961 55.000 0.00 0.00 39.74 3.41
1538 1871 0.820074 CAACGGTGGTAGGGCAACAA 60.820 55.000 0.00 0.00 39.74 2.83
1542 1875 0.250553 CTTTCAACGGTGGTAGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
1546 1879 0.511221 CACGCTTTCAACGGTGGTAG 59.489 55.000 0.00 0.00 34.00 3.18
1555 1888 0.034198 TGATCCCGTCACGCTTTCAA 59.966 50.000 0.00 0.00 0.00 2.69
1585 1918 1.670791 TCCCGTCACGCTTTCTTTTT 58.329 45.000 0.00 0.00 0.00 1.94
1586 1919 1.804748 GATCCCGTCACGCTTTCTTTT 59.195 47.619 0.00 0.00 0.00 2.27
1587 1920 1.439679 GATCCCGTCACGCTTTCTTT 58.560 50.000 0.00 0.00 0.00 2.52
1588 1921 0.391263 GGATCCCGTCACGCTTTCTT 60.391 55.000 0.00 0.00 0.00 2.52
1589 1922 1.218316 GGATCCCGTCACGCTTTCT 59.782 57.895 0.00 0.00 0.00 2.52
1590 1923 1.084370 CAGGATCCCGTCACGCTTTC 61.084 60.000 8.55 0.00 0.00 2.62
1591 1924 1.079127 CAGGATCCCGTCACGCTTT 60.079 57.895 8.55 0.00 0.00 3.51
1592 1925 1.541310 TTCAGGATCCCGTCACGCTT 61.541 55.000 8.55 0.00 0.00 4.68
1593 1926 1.949847 CTTCAGGATCCCGTCACGCT 61.950 60.000 8.55 0.00 0.00 5.07
1594 1927 1.519455 CTTCAGGATCCCGTCACGC 60.519 63.158 8.55 0.00 0.00 5.34
1595 1928 1.519455 GCTTCAGGATCCCGTCACG 60.519 63.158 8.55 0.00 0.00 4.35
1596 1929 0.036388 TTGCTTCAGGATCCCGTCAC 60.036 55.000 8.55 0.00 0.00 3.67
1597 1930 0.911769 ATTGCTTCAGGATCCCGTCA 59.088 50.000 8.55 0.00 0.00 4.35
1598 1931 1.672881 CAATTGCTTCAGGATCCCGTC 59.327 52.381 8.55 0.00 0.00 4.79
1599 1932 1.683011 CCAATTGCTTCAGGATCCCGT 60.683 52.381 8.55 0.00 0.00 5.28
1600 1933 1.027357 CCAATTGCTTCAGGATCCCG 58.973 55.000 8.55 0.00 0.00 5.14
1601 1934 2.442236 TCCAATTGCTTCAGGATCCC 57.558 50.000 8.55 0.00 0.00 3.85
1602 1935 4.522022 CCTTATCCAATTGCTTCAGGATCC 59.478 45.833 2.48 2.48 41.03 3.36
1603 1936 4.522022 CCCTTATCCAATTGCTTCAGGATC 59.478 45.833 0.00 0.00 41.03 3.36
1604 1937 4.477249 CCCTTATCCAATTGCTTCAGGAT 58.523 43.478 0.00 0.00 43.07 3.24
1605 1938 3.373001 CCCCTTATCCAATTGCTTCAGGA 60.373 47.826 0.00 0.00 34.12 3.86
1606 1939 2.961062 CCCCTTATCCAATTGCTTCAGG 59.039 50.000 0.00 2.70 0.00 3.86
1607 1940 3.902218 TCCCCTTATCCAATTGCTTCAG 58.098 45.455 0.00 0.00 0.00 3.02
1608 1941 4.264352 ACTTCCCCTTATCCAATTGCTTCA 60.264 41.667 0.00 0.00 0.00 3.02
1609 1942 4.281657 ACTTCCCCTTATCCAATTGCTTC 58.718 43.478 0.00 0.00 0.00 3.86
1610 1943 4.281657 GACTTCCCCTTATCCAATTGCTT 58.718 43.478 0.00 0.00 0.00 3.91
1611 1944 3.685550 CGACTTCCCCTTATCCAATTGCT 60.686 47.826 0.00 0.00 0.00 3.91
1612 1945 2.618709 CGACTTCCCCTTATCCAATTGC 59.381 50.000 0.00 0.00 0.00 3.56
1613 1946 4.130118 CTCGACTTCCCCTTATCCAATTG 58.870 47.826 0.00 0.00 0.00 2.32
1614 1947 3.780850 ACTCGACTTCCCCTTATCCAATT 59.219 43.478 0.00 0.00 0.00 2.32
1615 1948 3.134804 CACTCGACTTCCCCTTATCCAAT 59.865 47.826 0.00 0.00 0.00 3.16
1616 1949 2.500098 CACTCGACTTCCCCTTATCCAA 59.500 50.000 0.00 0.00 0.00 3.53
1617 1950 2.108168 CACTCGACTTCCCCTTATCCA 58.892 52.381 0.00 0.00 0.00 3.41
1628 1961 2.354259 CCGACTACTACCACTCGACTT 58.646 52.381 0.00 0.00 0.00 3.01
1629 1962 1.406614 CCCGACTACTACCACTCGACT 60.407 57.143 0.00 0.00 0.00 4.18
1630 1963 1.012841 CCCGACTACTACCACTCGAC 58.987 60.000 0.00 0.00 0.00 4.20
1631 1964 0.745845 GCCCGACTACTACCACTCGA 60.746 60.000 0.00 0.00 0.00 4.04
1632 1965 1.726265 GCCCGACTACTACCACTCG 59.274 63.158 0.00 0.00 0.00 4.18
1633 1966 1.722636 CCGCCCGACTACTACCACTC 61.723 65.000 0.00 0.00 0.00 3.51
1640 2108 3.086733 GTAGTACCGCCCGACTACT 57.913 57.895 10.57 7.45 43.09 2.57
1641 2109 0.659957 CAGTAGTACCGCCCGACTAC 59.340 60.000 10.09 10.09 45.57 2.73
1647 2115 2.412112 CGAGCAGTAGTACCGCCC 59.588 66.667 4.85 0.00 0.00 6.13
1651 2119 2.471862 GTAGTGCGAGCAGTAGTACC 57.528 55.000 12.39 0.00 35.97 3.34
1652 2120 1.741706 TGGTAGTGCGAGCAGTAGTAC 59.258 52.381 12.39 4.60 39.63 2.73
1654 2122 1.475403 ATGGTAGTGCGAGCAGTAGT 58.525 50.000 12.39 0.79 33.10 2.73
1656 2124 3.328382 AAAATGGTAGTGCGAGCAGTA 57.672 42.857 8.41 8.41 0.00 2.74
1657 2125 2.185004 AAAATGGTAGTGCGAGCAGT 57.815 45.000 10.46 10.46 0.00 4.40
1658 2126 2.744202 AGAAAAATGGTAGTGCGAGCAG 59.256 45.455 0.00 0.00 0.00 4.24
1659 2127 2.778299 AGAAAAATGGTAGTGCGAGCA 58.222 42.857 0.00 0.00 0.00 4.26
1660 2128 3.426292 GGAAGAAAAATGGTAGTGCGAGC 60.426 47.826 0.00 0.00 0.00 5.03
1661 2129 3.181520 CGGAAGAAAAATGGTAGTGCGAG 60.182 47.826 0.00 0.00 0.00 5.03
1662 2130 2.739913 CGGAAGAAAAATGGTAGTGCGA 59.260 45.455 0.00 0.00 0.00 5.10
1663 2131 2.727916 GCGGAAGAAAAATGGTAGTGCG 60.728 50.000 0.00 0.00 0.00 5.34
1664 2132 2.488153 AGCGGAAGAAAAATGGTAGTGC 59.512 45.455 0.00 0.00 0.00 4.40
1665 2133 3.751175 TGAGCGGAAGAAAAATGGTAGTG 59.249 43.478 0.00 0.00 0.00 2.74
1666 2134 4.015872 TGAGCGGAAGAAAAATGGTAGT 57.984 40.909 0.00 0.00 0.00 2.73
1667 2135 4.379499 GGTTGAGCGGAAGAAAAATGGTAG 60.379 45.833 0.00 0.00 0.00 3.18
1668 2136 3.504520 GGTTGAGCGGAAGAAAAATGGTA 59.495 43.478 0.00 0.00 0.00 3.25
1669 2137 2.296190 GGTTGAGCGGAAGAAAAATGGT 59.704 45.455 0.00 0.00 0.00 3.55
1670 2138 2.352715 GGGTTGAGCGGAAGAAAAATGG 60.353 50.000 0.00 0.00 0.00 3.16
1671 2139 2.668279 CGGGTTGAGCGGAAGAAAAATG 60.668 50.000 0.00 0.00 0.00 2.32
1672 2140 1.539827 CGGGTTGAGCGGAAGAAAAAT 59.460 47.619 0.00 0.00 0.00 1.82
1673 2141 0.948678 CGGGTTGAGCGGAAGAAAAA 59.051 50.000 0.00 0.00 0.00 1.94
1674 2142 0.107081 TCGGGTTGAGCGGAAGAAAA 59.893 50.000 0.00 0.00 0.00 2.29
1675 2143 0.601841 GTCGGGTTGAGCGGAAGAAA 60.602 55.000 0.00 0.00 0.00 2.52
1676 2144 1.005394 GTCGGGTTGAGCGGAAGAA 60.005 57.895 0.00 0.00 0.00 2.52
1677 2145 1.541310 ATGTCGGGTTGAGCGGAAGA 61.541 55.000 0.00 0.00 0.00 2.87
1678 2146 1.079127 ATGTCGGGTTGAGCGGAAG 60.079 57.895 0.00 0.00 0.00 3.46
1679 2147 1.375396 CATGTCGGGTTGAGCGGAA 60.375 57.895 0.00 0.00 0.00 4.30
1680 2148 1.822114 TTCATGTCGGGTTGAGCGGA 61.822 55.000 0.00 0.00 0.00 5.54
1681 2149 0.953471 TTTCATGTCGGGTTGAGCGG 60.953 55.000 0.00 0.00 0.00 5.52
1682 2150 0.871722 TTTTCATGTCGGGTTGAGCG 59.128 50.000 0.00 0.00 0.00 5.03
1683 2151 1.880027 ACTTTTCATGTCGGGTTGAGC 59.120 47.619 0.00 0.00 0.00 4.26
1684 2152 3.813529 GACTTTTCATGTCGGGTTGAG 57.186 47.619 0.00 0.00 0.00 3.02
1692 2160 3.305964 TCACGACTCGACTTTTCATGTC 58.694 45.455 5.20 0.00 0.00 3.06
1693 2161 3.364889 TCACGACTCGACTTTTCATGT 57.635 42.857 5.20 0.00 0.00 3.21
1694 2162 4.028429 CGTATCACGACTCGACTTTTCATG 60.028 45.833 5.20 0.00 46.05 3.07
1695 2163 4.096311 CGTATCACGACTCGACTTTTCAT 58.904 43.478 5.20 0.00 46.05 2.57
1696 2164 3.058708 ACGTATCACGACTCGACTTTTCA 60.059 43.478 5.20 0.00 46.05 2.69
1697 2165 3.486584 ACGTATCACGACTCGACTTTTC 58.513 45.455 5.20 0.00 46.05 2.29
1698 2166 3.188048 AGACGTATCACGACTCGACTTTT 59.812 43.478 5.20 0.00 42.32 2.27
1699 2167 2.740981 AGACGTATCACGACTCGACTTT 59.259 45.455 5.20 0.00 42.32 2.66
1700 2168 2.344950 AGACGTATCACGACTCGACTT 58.655 47.619 5.20 0.00 42.32 3.01
1701 2169 2.007360 AGACGTATCACGACTCGACT 57.993 50.000 5.20 0.00 42.32 4.18
1702 2170 2.093310 TGAAGACGTATCACGACTCGAC 59.907 50.000 5.20 1.95 44.88 4.20
1703 2171 2.340337 TGAAGACGTATCACGACTCGA 58.660 47.619 5.20 0.00 44.88 4.04
1704 2172 2.800694 TGAAGACGTATCACGACTCG 57.199 50.000 5.61 0.00 44.88 4.18
1705 2173 2.839026 CGTTGAAGACGTATCACGACTC 59.161 50.000 5.61 0.02 44.88 3.36
1816 3404 5.163066 TGGGCCTTTGGTTAGTAAGTTAGTT 60.163 40.000 4.53 0.00 0.00 2.24
1886 4001 5.416326 TCCGTTTGGATTCCGTTTGATATTT 59.584 36.000 0.00 0.00 40.17 1.40
2040 4649 1.749334 GAGCTACGAGGGGTCCATGG 61.749 65.000 4.97 4.97 0.00 3.66
2046 4655 2.363925 GGTGGAGCTACGAGGGGT 60.364 66.667 0.00 0.00 0.00 4.95
2102 4711 1.131126 CGTGGTGCTGATGGATGTTTC 59.869 52.381 0.00 0.00 0.00 2.78
2112 4721 0.981183 ATAAGGTTCCGTGGTGCTGA 59.019 50.000 0.00 0.00 0.00 4.26
2113 4722 1.821216 AATAAGGTTCCGTGGTGCTG 58.179 50.000 0.00 0.00 0.00 4.41
2123 4732 2.554893 TGCGGTGGTGAAAATAAGGTTC 59.445 45.455 0.00 0.00 0.00 3.62
2128 4737 1.904287 AGCTGCGGTGGTGAAAATAA 58.096 45.000 0.00 0.00 0.00 1.40
2134 4743 1.597854 CAGAAAGCTGCGGTGGTGA 60.598 57.895 0.00 0.00 34.95 4.02
2145 4754 2.541556 GATCTCACGGGTACAGAAAGC 58.458 52.381 0.00 0.00 0.00 3.51
2147 4756 1.829222 GGGATCTCACGGGTACAGAAA 59.171 52.381 0.00 0.00 0.00 2.52
2219 4829 3.902881 AGAGGCTATGGTGTTCAGAAG 57.097 47.619 0.00 0.00 0.00 2.85
2220 4830 3.368427 CGAAGAGGCTATGGTGTTCAGAA 60.368 47.826 0.00 0.00 0.00 3.02
2222 4832 2.166459 TCGAAGAGGCTATGGTGTTCAG 59.834 50.000 0.00 0.00 0.00 3.02
2223 4833 2.176045 TCGAAGAGGCTATGGTGTTCA 58.824 47.619 0.00 0.00 0.00 3.18
2224 4834 2.961526 TCGAAGAGGCTATGGTGTTC 57.038 50.000 0.00 0.00 0.00 3.18
2240 4855 8.035984 TGTGGTAAAATACTCACACATTATCGA 58.964 33.333 0.00 0.00 36.02 3.59
2245 4860 6.995686 TGTCTGTGGTAAAATACTCACACATT 59.004 34.615 0.00 0.00 38.07 2.71
2257 4872 3.404899 GACCCGAATGTCTGTGGTAAAA 58.595 45.455 0.00 0.00 32.39 1.52
2270 4885 6.952358 TCTAGCTAATAACTATGGACCCGAAT 59.048 38.462 0.00 0.00 0.00 3.34
2298 4913 6.015918 TGAGATCCAAAGAGAGAGAAGAAGT 58.984 40.000 0.00 0.00 0.00 3.01
2491 5106 5.923684 GCCAAACCAAACTGATAATTCGAAA 59.076 36.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.