Multiple sequence alignment - TraesCS1A01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G289200 chr1A 100.000 4030 0 0 1 4030 486599530 486595501 0.000000e+00 7443.0
1 TraesCS1A01G289200 chr1A 79.756 1393 125 77 640 1927 486581781 486580441 0.000000e+00 865.0
2 TraesCS1A01G289200 chr1A 81.720 279 31 12 2045 2308 486580232 486579959 8.770000e-52 215.0
3 TraesCS1A01G289200 chr1D 89.064 1335 78 35 675 1967 386787422 386786114 0.000000e+00 1594.0
4 TraesCS1A01G289200 chr1D 90.994 1177 91 8 2716 3889 386776607 386775443 0.000000e+00 1572.0
5 TraesCS1A01G289200 chr1D 79.772 1577 147 89 459 1927 386750678 386749166 0.000000e+00 987.0
6 TraesCS1A01G289200 chr1D 88.506 783 54 15 1962 2722 386786064 386785296 0.000000e+00 915.0
7 TraesCS1A01G289200 chr1D 89.732 224 16 4 459 677 386787917 386787696 3.070000e-71 279.0
8 TraesCS1A01G289200 chr1D 84.472 161 19 2 5 165 417891547 417891393 1.940000e-33 154.0
9 TraesCS1A01G289200 chr1D 96.970 66 2 0 584 649 386797946 386797881 1.180000e-20 111.0
10 TraesCS1A01G289200 chr1D 82.400 125 5 6 645 769 386788037 386787930 4.290000e-15 93.5
11 TraesCS1A01G289200 chr1B 90.728 755 56 8 2702 3451 520262921 520262176 0.000000e+00 994.0
12 TraesCS1A01G289200 chr1B 89.691 679 29 14 920 1581 520277274 520276620 0.000000e+00 828.0
13 TraesCS1A01G289200 chr1B 78.979 1313 127 73 727 1927 520145568 520144293 0.000000e+00 758.0
14 TraesCS1A01G289200 chr1B 89.500 600 53 6 3434 4030 520261990 520261398 0.000000e+00 750.0
15 TraesCS1A01G289200 chr1B 86.242 487 47 14 2225 2710 520275727 520275260 9.990000e-141 510.0
16 TraesCS1A01G289200 chr1B 87.841 403 32 10 1566 1967 520276331 520275945 1.320000e-124 457.0
17 TraesCS1A01G289200 chr1B 89.963 269 19 5 559 822 520277697 520277432 1.390000e-89 340.0
18 TraesCS1A01G289200 chr1B 85.560 277 21 14 1056 1325 520243099 520242835 5.130000e-69 272.0
19 TraesCS1A01G289200 chr1B 91.139 158 11 3 1962 2118 520275894 520275739 1.130000e-50 211.0
20 TraesCS1A01G289200 chr2D 87.090 457 26 15 1 454 59321997 59322423 1.680000e-133 486.0
21 TraesCS1A01G289200 chr7D 82.443 262 19 11 197 457 45606221 45605986 1.900000e-48 204.0
22 TraesCS1A01G289200 chr7D 92.784 97 7 0 5 101 45606491 45606395 1.510000e-29 141.0
23 TraesCS1A01G289200 chr3B 81.818 264 22 13 197 460 536887962 536887725 8.830000e-47 198.0
24 TraesCS1A01G289200 chr3D 88.750 160 16 2 6 165 374377577 374377734 1.140000e-45 195.0
25 TraesCS1A01G289200 chr3D 81.154 260 21 12 197 454 2410362 2410595 2.470000e-42 183.0
26 TraesCS1A01G289200 chr3D 85.093 161 24 0 5 165 545427246 545427086 8.960000e-37 165.0
27 TraesCS1A01G289200 chr3D 95.745 94 4 0 5 98 2410092 2410185 6.980000e-33 152.0
28 TraesCS1A01G289200 chr3D 93.750 96 6 0 6 101 97910889 97910984 1.170000e-30 145.0
29 TraesCS1A01G289200 chr2B 87.931 174 10 6 284 454 706401428 706401593 1.140000e-45 195.0
30 TraesCS1A01G289200 chr4A 85.106 188 18 6 270 457 522140412 522140235 2.470000e-42 183.0
31 TraesCS1A01G289200 chr4D 86.709 158 21 0 5 162 1840556 1840713 4.140000e-40 176.0
32 TraesCS1A01G289200 chr4D 84.138 145 13 5 317 458 506029067 506029204 9.090000e-27 132.0
33 TraesCS1A01G289200 chr5B 79.167 264 21 17 197 460 679692420 679692191 6.980000e-33 152.0
34 TraesCS1A01G289200 chr4B 87.143 140 10 4 319 457 142676413 142676281 6.980000e-33 152.0
35 TraesCS1A01G289200 chr4B 100.000 29 0 0 165 193 142677323 142677295 2.000000e-03 54.7
36 TraesCS1A01G289200 chr7B 94.595 74 4 0 5 78 86976613 86976540 9.150000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G289200 chr1A 486595501 486599530 4029 True 7443.000 7443 100.0000 1 4030 1 chr1A.!!$R1 4029
1 TraesCS1A01G289200 chr1A 486579959 486581781 1822 True 540.000 865 80.7380 640 2308 2 chr1A.!!$R2 1668
2 TraesCS1A01G289200 chr1D 386775443 386776607 1164 True 1572.000 1572 90.9940 2716 3889 1 chr1D.!!$R2 1173
3 TraesCS1A01G289200 chr1D 386749166 386750678 1512 True 987.000 987 79.7720 459 1927 1 chr1D.!!$R1 1468
4 TraesCS1A01G289200 chr1D 386785296 386788037 2741 True 720.375 1594 87.4255 459 2722 4 chr1D.!!$R5 2263
5 TraesCS1A01G289200 chr1B 520261398 520262921 1523 True 872.000 994 90.1140 2702 4030 2 chr1B.!!$R3 1328
6 TraesCS1A01G289200 chr1B 520144293 520145568 1275 True 758.000 758 78.9790 727 1927 1 chr1B.!!$R1 1200
7 TraesCS1A01G289200 chr1B 520275260 520277697 2437 True 469.200 828 88.9752 559 2710 5 chr1B.!!$R4 2151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 427 0.035820 TGTCCTAACATGTTCGCCCC 60.036 55.0 15.85 1.49 0.00 5.80 F
1792 2586 0.026674 CTTGTGTGTGTGTGTGCTCG 59.973 55.0 0.00 0.00 0.00 5.03 F
2208 3121 0.101939 GGCCAATTAGCAGCTTCAGC 59.898 55.0 0.00 0.00 42.49 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 3246 0.466555 TTGGTATATTGGTGGGCGCC 60.467 55.0 21.18 21.18 0.00 6.53 R
2774 3709 0.604511 TGACGTGAGGAGCGACACTA 60.605 55.0 0.00 0.00 35.23 2.74 R
3491 4635 1.290203 GCGACGGATCATGACAACAT 58.710 50.0 0.00 0.00 37.19 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.485463 TGGCGAAGAAGGAAGAAAAGA 57.515 42.857 0.00 0.00 0.00 2.52
21 22 4.021102 TGGCGAAGAAGGAAGAAAAGAT 57.979 40.909 0.00 0.00 0.00 2.40
22 23 3.753272 TGGCGAAGAAGGAAGAAAAGATG 59.247 43.478 0.00 0.00 0.00 2.90
23 24 3.127721 GGCGAAGAAGGAAGAAAAGATGG 59.872 47.826 0.00 0.00 0.00 3.51
24 25 3.127721 GCGAAGAAGGAAGAAAAGATGGG 59.872 47.826 0.00 0.00 0.00 4.00
25 26 3.127721 CGAAGAAGGAAGAAAAGATGGGC 59.872 47.826 0.00 0.00 0.00 5.36
26 27 3.093057 AGAAGGAAGAAAAGATGGGCC 57.907 47.619 0.00 0.00 0.00 5.80
27 28 2.651841 AGAAGGAAGAAAAGATGGGCCT 59.348 45.455 4.53 0.00 0.00 5.19
28 29 3.852578 AGAAGGAAGAAAAGATGGGCCTA 59.147 43.478 4.53 0.00 0.00 3.93
29 30 3.941704 AGGAAGAAAAGATGGGCCTAG 57.058 47.619 4.53 0.00 0.00 3.02
30 31 3.464828 AGGAAGAAAAGATGGGCCTAGA 58.535 45.455 4.53 0.00 0.00 2.43
31 32 3.201045 AGGAAGAAAAGATGGGCCTAGAC 59.799 47.826 4.53 0.00 0.00 2.59
32 33 2.990066 AGAAAAGATGGGCCTAGACG 57.010 50.000 4.53 0.00 0.00 4.18
44 45 0.608640 CCTAGACGGCTGGACTTTGT 59.391 55.000 1.71 0.00 0.00 2.83
45 46 1.673033 CCTAGACGGCTGGACTTTGTG 60.673 57.143 1.71 0.00 0.00 3.33
46 47 0.320374 TAGACGGCTGGACTTTGTGG 59.680 55.000 0.00 0.00 0.00 4.17
47 48 1.966451 GACGGCTGGACTTTGTGGG 60.966 63.158 0.00 0.00 0.00 4.61
51 52 1.115326 GGCTGGACTTTGTGGGCTTT 61.115 55.000 0.00 0.00 0.00 3.51
52 53 1.616159 GCTGGACTTTGTGGGCTTTA 58.384 50.000 0.00 0.00 0.00 1.85
53 54 1.541588 GCTGGACTTTGTGGGCTTTAG 59.458 52.381 0.00 0.00 0.00 1.85
54 55 2.863809 CTGGACTTTGTGGGCTTTAGT 58.136 47.619 0.00 0.00 0.00 2.24
56 57 4.394729 CTGGACTTTGTGGGCTTTAGTTA 58.605 43.478 0.00 0.00 0.00 2.24
57 58 4.394729 TGGACTTTGTGGGCTTTAGTTAG 58.605 43.478 0.00 0.00 0.00 2.34
59 60 4.825634 GGACTTTGTGGGCTTTAGTTAGTT 59.174 41.667 0.00 0.00 0.00 2.24
60 61 5.278315 GGACTTTGTGGGCTTTAGTTAGTTG 60.278 44.000 0.00 0.00 0.00 3.16
61 62 5.198207 ACTTTGTGGGCTTTAGTTAGTTGT 58.802 37.500 0.00 0.00 0.00 3.32
62 63 5.067283 ACTTTGTGGGCTTTAGTTAGTTGTG 59.933 40.000 0.00 0.00 0.00 3.33
63 64 3.482436 TGTGGGCTTTAGTTAGTTGTGG 58.518 45.455 0.00 0.00 0.00 4.17
65 66 4.139038 GTGGGCTTTAGTTAGTTGTGGAA 58.861 43.478 0.00 0.00 0.00 3.53
66 67 4.215613 GTGGGCTTTAGTTAGTTGTGGAAG 59.784 45.833 0.00 0.00 0.00 3.46
67 68 3.756963 GGGCTTTAGTTAGTTGTGGAAGG 59.243 47.826 0.00 0.00 0.00 3.46
68 69 3.190744 GGCTTTAGTTAGTTGTGGAAGGC 59.809 47.826 0.00 0.00 0.00 4.35
70 71 3.428413 TTAGTTAGTTGTGGAAGGCCC 57.572 47.619 0.00 0.00 0.00 5.80
71 72 1.145571 AGTTAGTTGTGGAAGGCCCA 58.854 50.000 0.00 0.00 44.25 5.36
99 100 7.835634 TTTATTTTTCAGAAACCAACACACC 57.164 32.000 0.00 0.00 0.00 4.16
100 101 4.873746 TTTTTCAGAAACCAACACACCA 57.126 36.364 0.00 0.00 0.00 4.17
102 103 2.051334 TCAGAAACCAACACACCAGG 57.949 50.000 0.00 0.00 0.00 4.45
103 104 1.283613 TCAGAAACCAACACACCAGGT 59.716 47.619 0.00 0.00 37.20 4.00
104 105 2.506231 TCAGAAACCAACACACCAGGTA 59.494 45.455 0.00 0.00 34.63 3.08
105 106 2.616842 CAGAAACCAACACACCAGGTAC 59.383 50.000 0.00 0.00 34.63 3.34
106 107 2.240160 AGAAACCAACACACCAGGTACA 59.760 45.455 0.00 0.00 34.63 2.90
107 108 2.047002 AACCAACACACCAGGTACAC 57.953 50.000 0.00 0.00 34.63 2.90
108 109 1.209621 ACCAACACACCAGGTACACT 58.790 50.000 0.00 0.00 32.92 3.55
109 110 2.400573 ACCAACACACCAGGTACACTA 58.599 47.619 0.00 0.00 32.92 2.74
110 111 2.103601 ACCAACACACCAGGTACACTAC 59.896 50.000 0.00 0.00 32.92 2.73
111 112 2.400399 CAACACACCAGGTACACTACG 58.600 52.381 0.00 0.00 0.00 3.51
112 113 0.316204 ACACACCAGGTACACTACGC 59.684 55.000 0.00 0.00 0.00 4.42
113 114 0.731514 CACACCAGGTACACTACGCG 60.732 60.000 3.53 3.53 0.00 6.01
114 115 1.804326 CACCAGGTACACTACGCGC 60.804 63.158 5.73 0.00 0.00 6.86
116 117 1.804326 CCAGGTACACTACGCGCAC 60.804 63.158 5.73 0.00 0.00 5.34
118 119 2.176546 GGTACACTACGCGCACGA 59.823 61.111 5.73 0.00 43.93 4.35
119 120 1.866496 GGTACACTACGCGCACGAG 60.866 63.158 5.73 3.07 43.93 4.18
120 121 2.202388 TACACTACGCGCACGAGC 60.202 61.111 5.73 0.00 43.93 5.03
121 122 3.672255 TACACTACGCGCACGAGCC 62.672 63.158 5.73 0.00 43.93 4.70
122 123 4.778415 CACTACGCGCACGAGCCT 62.778 66.667 5.73 0.00 43.93 4.58
123 124 4.778415 ACTACGCGCACGAGCCTG 62.778 66.667 5.73 0.00 43.93 4.85
124 125 4.778415 CTACGCGCACGAGCCTGT 62.778 66.667 5.73 0.42 43.93 4.00
125 126 4.351938 TACGCGCACGAGCCTGTT 62.352 61.111 5.73 0.00 43.93 3.16
141 142 4.425577 CCTGTTGGCTGTTGAATAGTTC 57.574 45.455 0.00 0.00 0.00 3.01
142 143 4.074970 CCTGTTGGCTGTTGAATAGTTCT 58.925 43.478 0.00 0.00 0.00 3.01
143 144 5.245531 CCTGTTGGCTGTTGAATAGTTCTA 58.754 41.667 0.00 0.00 0.00 2.10
144 145 5.882557 CCTGTTGGCTGTTGAATAGTTCTAT 59.117 40.000 0.00 0.00 0.00 1.98
145 146 6.375455 CCTGTTGGCTGTTGAATAGTTCTATT 59.625 38.462 4.95 4.95 0.00 1.73
146 147 7.094205 CCTGTTGGCTGTTGAATAGTTCTATTT 60.094 37.037 6.54 0.00 0.00 1.40
147 148 8.856153 TGTTGGCTGTTGAATAGTTCTATTTA 57.144 30.769 6.54 0.71 0.00 1.40
148 149 8.946085 TGTTGGCTGTTGAATAGTTCTATTTAG 58.054 33.333 6.54 5.26 0.00 1.85
149 150 8.947115 GTTGGCTGTTGAATAGTTCTATTTAGT 58.053 33.333 6.54 0.00 0.00 2.24
165 166 8.589335 TCTATTTAGTATTGTTCGATTGGAGC 57.411 34.615 0.00 0.00 0.00 4.70
166 167 8.201464 TCTATTTAGTATTGTTCGATTGGAGCA 58.799 33.333 0.00 0.00 33.70 4.26
167 168 6.417191 TTTAGTATTGTTCGATTGGAGCAC 57.583 37.500 0.00 0.00 35.44 4.40
168 169 4.207891 AGTATTGTTCGATTGGAGCACT 57.792 40.909 0.00 0.00 35.44 4.40
169 170 3.935203 AGTATTGTTCGATTGGAGCACTG 59.065 43.478 0.00 0.00 35.44 3.66
170 171 0.874390 TTGTTCGATTGGAGCACTGC 59.126 50.000 0.00 0.00 35.44 4.40
171 172 0.955428 TGTTCGATTGGAGCACTGCC 60.955 55.000 0.00 0.00 30.19 4.85
172 173 0.674895 GTTCGATTGGAGCACTGCCT 60.675 55.000 0.00 0.00 0.00 4.75
173 174 0.036732 TTCGATTGGAGCACTGCCTT 59.963 50.000 0.00 0.00 0.00 4.35
174 175 0.391661 TCGATTGGAGCACTGCCTTC 60.392 55.000 0.00 0.00 0.00 3.46
175 176 1.372087 CGATTGGAGCACTGCCTTCC 61.372 60.000 0.00 0.00 0.00 3.46
176 177 0.322816 GATTGGAGCACTGCCTTCCA 60.323 55.000 7.72 7.72 39.16 3.53
177 178 1.536180 TTGGAGCACTGCCTTCCAA 59.464 52.632 16.96 16.96 45.95 3.53
178 179 0.106268 TTGGAGCACTGCCTTCCAAA 60.106 50.000 18.08 6.30 45.36 3.28
179 180 0.112995 TGGAGCACTGCCTTCCAAAT 59.887 50.000 9.11 0.00 38.03 2.32
180 181 1.260544 GGAGCACTGCCTTCCAAATT 58.739 50.000 4.74 0.00 0.00 1.82
181 182 1.203287 GGAGCACTGCCTTCCAAATTC 59.797 52.381 4.74 0.00 0.00 2.17
182 183 1.203287 GAGCACTGCCTTCCAAATTCC 59.797 52.381 0.00 0.00 0.00 3.01
183 184 0.968405 GCACTGCCTTCCAAATTCCA 59.032 50.000 0.00 0.00 0.00 3.53
184 185 1.344114 GCACTGCCTTCCAAATTCCAA 59.656 47.619 0.00 0.00 0.00 3.53
185 186 2.027837 GCACTGCCTTCCAAATTCCAAT 60.028 45.455 0.00 0.00 0.00 3.16
186 187 3.853475 CACTGCCTTCCAAATTCCAATC 58.147 45.455 0.00 0.00 0.00 2.67
187 188 2.833943 ACTGCCTTCCAAATTCCAATCC 59.166 45.455 0.00 0.00 0.00 3.01
188 189 2.169144 CTGCCTTCCAAATTCCAATCCC 59.831 50.000 0.00 0.00 0.00 3.85
189 190 2.225598 TGCCTTCCAAATTCCAATCCCT 60.226 45.455 0.00 0.00 0.00 4.20
190 191 3.012274 TGCCTTCCAAATTCCAATCCCTA 59.988 43.478 0.00 0.00 0.00 3.53
191 192 3.638627 GCCTTCCAAATTCCAATCCCTAG 59.361 47.826 0.00 0.00 0.00 3.02
192 193 3.638627 CCTTCCAAATTCCAATCCCTAGC 59.361 47.826 0.00 0.00 0.00 3.42
193 194 3.312736 TCCAAATTCCAATCCCTAGCC 57.687 47.619 0.00 0.00 0.00 3.93
194 195 2.584965 TCCAAATTCCAATCCCTAGCCA 59.415 45.455 0.00 0.00 0.00 4.75
195 196 3.012274 TCCAAATTCCAATCCCTAGCCAA 59.988 43.478 0.00 0.00 0.00 4.52
196 197 3.969312 CCAAATTCCAATCCCTAGCCAAT 59.031 43.478 0.00 0.00 0.00 3.16
197 198 4.409901 CCAAATTCCAATCCCTAGCCAATT 59.590 41.667 0.00 0.00 0.00 2.32
198 199 5.104402 CCAAATTCCAATCCCTAGCCAATTT 60.104 40.000 0.00 0.00 0.00 1.82
199 200 6.417258 CAAATTCCAATCCCTAGCCAATTTT 58.583 36.000 0.00 0.00 0.00 1.82
200 201 5.619132 ATTCCAATCCCTAGCCAATTTTG 57.381 39.130 0.00 0.00 0.00 2.44
215 216 5.852827 CCAATTTTGGGTCATGTTGTTACT 58.147 37.500 1.14 0.00 44.70 2.24
216 217 5.695816 CCAATTTTGGGTCATGTTGTTACTG 59.304 40.000 1.14 0.00 44.70 2.74
217 218 4.314740 TTTTGGGTCATGTTGTTACTGC 57.685 40.909 0.00 0.00 0.00 4.40
218 219 1.904287 TGGGTCATGTTGTTACTGCC 58.096 50.000 0.00 0.00 0.00 4.85
219 220 1.143889 TGGGTCATGTTGTTACTGCCA 59.856 47.619 0.00 0.00 0.00 4.92
220 221 2.235016 GGGTCATGTTGTTACTGCCAA 58.765 47.619 0.00 0.00 0.00 4.52
221 222 2.825532 GGGTCATGTTGTTACTGCCAAT 59.174 45.455 0.00 0.00 0.00 3.16
222 223 3.367292 GGGTCATGTTGTTACTGCCAATG 60.367 47.826 0.00 0.00 0.00 2.82
223 224 3.505680 GGTCATGTTGTTACTGCCAATGA 59.494 43.478 0.00 0.00 0.00 2.57
224 225 4.022416 GGTCATGTTGTTACTGCCAATGAA 60.022 41.667 0.00 0.00 0.00 2.57
225 226 5.336690 GGTCATGTTGTTACTGCCAATGAAT 60.337 40.000 0.00 0.00 0.00 2.57
226 227 5.574055 GTCATGTTGTTACTGCCAATGAATG 59.426 40.000 0.00 0.00 0.00 2.67
227 228 5.243507 TCATGTTGTTACTGCCAATGAATGT 59.756 36.000 0.00 0.00 0.00 2.71
228 229 5.528043 TGTTGTTACTGCCAATGAATGTT 57.472 34.783 0.00 0.00 0.00 2.71
229 230 5.527951 TGTTGTTACTGCCAATGAATGTTC 58.472 37.500 0.00 0.00 0.00 3.18
230 231 5.068329 TGTTGTTACTGCCAATGAATGTTCA 59.932 36.000 0.00 0.00 42.14 3.18
231 232 5.375417 TGTTACTGCCAATGAATGTTCAG 57.625 39.130 1.65 0.00 41.08 3.02
232 233 4.218200 TGTTACTGCCAATGAATGTTCAGG 59.782 41.667 1.65 0.00 41.08 3.86
233 234 1.547372 ACTGCCAATGAATGTTCAGGC 59.453 47.619 15.36 15.36 44.40 4.85
235 236 2.747396 GCCAATGAATGTTCAGGCAA 57.253 45.000 16.65 0.00 43.89 4.52
236 237 2.340337 GCCAATGAATGTTCAGGCAAC 58.660 47.619 16.65 0.00 43.89 4.17
243 244 2.719376 TGTTCAGGCAACAAGAGGC 58.281 52.632 0.00 0.00 42.35 4.70
249 250 4.102113 GCAACAAGAGGCCATGGT 57.898 55.556 14.67 0.00 0.00 3.55
250 251 3.264574 GCAACAAGAGGCCATGGTA 57.735 52.632 14.67 0.00 0.00 3.25
251 252 1.098050 GCAACAAGAGGCCATGGTAG 58.902 55.000 14.67 0.00 0.00 3.18
252 253 1.614317 GCAACAAGAGGCCATGGTAGT 60.614 52.381 14.67 0.00 0.00 2.73
253 254 2.355716 GCAACAAGAGGCCATGGTAGTA 60.356 50.000 14.67 0.00 0.00 1.82
254 255 3.872240 GCAACAAGAGGCCATGGTAGTAA 60.872 47.826 14.67 0.00 0.00 2.24
255 256 4.526970 CAACAAGAGGCCATGGTAGTAAT 58.473 43.478 14.67 0.00 0.00 1.89
256 257 4.862641 ACAAGAGGCCATGGTAGTAATT 57.137 40.909 14.67 0.00 0.00 1.40
257 258 5.193099 ACAAGAGGCCATGGTAGTAATTT 57.807 39.130 14.67 0.00 0.00 1.82
258 259 5.193679 ACAAGAGGCCATGGTAGTAATTTC 58.806 41.667 14.67 0.30 0.00 2.17
259 260 5.044846 ACAAGAGGCCATGGTAGTAATTTCT 60.045 40.000 14.67 2.57 0.00 2.52
260 261 5.041191 AGAGGCCATGGTAGTAATTTCTG 57.959 43.478 14.67 0.00 0.00 3.02
261 262 3.555966 AGGCCATGGTAGTAATTTCTGC 58.444 45.455 14.67 0.00 0.00 4.26
262 263 2.623416 GGCCATGGTAGTAATTTCTGCC 59.377 50.000 14.67 11.53 39.95 4.85
271 272 8.450578 TGGTAGTAATTTCTGCCAATGAATAG 57.549 34.615 17.47 0.00 44.67 1.73
272 273 8.052748 TGGTAGTAATTTCTGCCAATGAATAGT 58.947 33.333 17.47 0.00 44.67 2.12
273 274 8.903820 GGTAGTAATTTCTGCCAATGAATAGTT 58.096 33.333 13.20 0.00 39.45 2.24
274 275 9.937175 GTAGTAATTTCTGCCAATGAATAGTTC 57.063 33.333 0.00 0.00 0.00 3.01
275 276 8.814038 AGTAATTTCTGCCAATGAATAGTTCT 57.186 30.769 0.00 0.00 0.00 3.01
276 277 9.905713 AGTAATTTCTGCCAATGAATAGTTCTA 57.094 29.630 0.00 0.00 0.00 2.10
282 283 9.905713 TTCTGCCAATGAATAGTTCTATTTAGT 57.094 29.630 6.54 0.21 0.00 2.24
320 321 6.796705 AATTTTCCGTGGTCTTAGTAGTTG 57.203 37.500 0.00 0.00 0.00 3.16
321 322 5.534207 TTTTCCGTGGTCTTAGTAGTTGA 57.466 39.130 0.00 0.00 0.00 3.18
322 323 5.534207 TTTCCGTGGTCTTAGTAGTTGAA 57.466 39.130 0.00 0.00 0.00 2.69
323 324 5.733620 TTCCGTGGTCTTAGTAGTTGAAT 57.266 39.130 0.00 0.00 0.00 2.57
324 325 5.320549 TCCGTGGTCTTAGTAGTTGAATC 57.679 43.478 0.00 0.00 0.00 2.52
325 326 5.014858 TCCGTGGTCTTAGTAGTTGAATCT 58.985 41.667 0.00 0.00 0.00 2.40
326 327 5.479375 TCCGTGGTCTTAGTAGTTGAATCTT 59.521 40.000 0.00 0.00 0.00 2.40
327 328 6.660521 TCCGTGGTCTTAGTAGTTGAATCTTA 59.339 38.462 0.00 0.00 0.00 2.10
328 329 7.341256 TCCGTGGTCTTAGTAGTTGAATCTTAT 59.659 37.037 0.00 0.00 0.00 1.73
329 330 7.648510 CCGTGGTCTTAGTAGTTGAATCTTATC 59.351 40.741 0.00 0.00 0.00 1.75
330 331 8.407064 CGTGGTCTTAGTAGTTGAATCTTATCT 58.593 37.037 0.00 0.00 0.00 1.98
331 332 9.522804 GTGGTCTTAGTAGTTGAATCTTATCTG 57.477 37.037 0.00 0.00 0.00 2.90
332 333 8.198109 TGGTCTTAGTAGTTGAATCTTATCTGC 58.802 37.037 0.00 0.00 0.00 4.26
333 334 8.198109 GGTCTTAGTAGTTGAATCTTATCTGCA 58.802 37.037 0.00 0.00 0.00 4.41
334 335 9.026074 GTCTTAGTAGTTGAATCTTATCTGCAC 57.974 37.037 0.00 0.00 0.00 4.57
335 336 8.972127 TCTTAGTAGTTGAATCTTATCTGCACT 58.028 33.333 0.00 0.00 0.00 4.40
336 337 8.932945 TTAGTAGTTGAATCTTATCTGCACTG 57.067 34.615 0.00 0.00 0.00 3.66
337 338 7.175347 AGTAGTTGAATCTTATCTGCACTGA 57.825 36.000 0.00 0.00 0.00 3.41
338 339 7.615403 AGTAGTTGAATCTTATCTGCACTGAA 58.385 34.615 0.00 0.00 0.00 3.02
339 340 8.097038 AGTAGTTGAATCTTATCTGCACTGAAA 58.903 33.333 0.00 0.00 0.00 2.69
340 341 7.138692 AGTTGAATCTTATCTGCACTGAAAC 57.861 36.000 0.00 0.00 0.00 2.78
341 342 6.939163 AGTTGAATCTTATCTGCACTGAAACT 59.061 34.615 0.00 0.00 0.00 2.66
342 343 6.732531 TGAATCTTATCTGCACTGAAACTG 57.267 37.500 0.00 0.00 0.00 3.16
343 344 6.466812 TGAATCTTATCTGCACTGAAACTGA 58.533 36.000 0.00 0.00 0.00 3.41
344 345 6.936335 TGAATCTTATCTGCACTGAAACTGAA 59.064 34.615 0.00 0.00 0.00 3.02
345 346 7.609146 TGAATCTTATCTGCACTGAAACTGAAT 59.391 33.333 0.00 0.00 0.00 2.57
346 347 6.974932 TCTTATCTGCACTGAAACTGAATC 57.025 37.500 0.00 0.00 0.00 2.52
347 348 6.705302 TCTTATCTGCACTGAAACTGAATCT 58.295 36.000 0.00 0.00 0.00 2.40
348 349 7.164122 TCTTATCTGCACTGAAACTGAATCTT 58.836 34.615 0.00 0.00 0.00 2.40
349 350 7.663081 TCTTATCTGCACTGAAACTGAATCTTT 59.337 33.333 0.00 0.00 0.00 2.52
350 351 5.679734 TCTGCACTGAAACTGAATCTTTC 57.320 39.130 0.00 0.00 0.00 2.62
351 352 5.125356 TCTGCACTGAAACTGAATCTTTCA 58.875 37.500 0.00 0.00 36.44 2.69
352 353 5.589855 TCTGCACTGAAACTGAATCTTTCAA 59.410 36.000 0.50 0.00 39.58 2.69
353 354 5.824429 TGCACTGAAACTGAATCTTTCAAG 58.176 37.500 0.50 0.00 39.58 3.02
354 355 5.589855 TGCACTGAAACTGAATCTTTCAAGA 59.410 36.000 0.50 0.00 39.58 3.02
355 356 5.911838 GCACTGAAACTGAATCTTTCAAGAC 59.088 40.000 0.00 0.00 39.58 3.01
356 357 6.433766 CACTGAAACTGAATCTTTCAAGACC 58.566 40.000 0.00 0.00 39.58 3.85
357 358 6.038603 CACTGAAACTGAATCTTTCAAGACCA 59.961 38.462 0.00 0.00 39.58 4.02
358 359 6.774656 ACTGAAACTGAATCTTTCAAGACCAT 59.225 34.615 0.00 0.00 39.58 3.55
359 360 7.286316 ACTGAAACTGAATCTTTCAAGACCATT 59.714 33.333 0.00 0.00 39.58 3.16
360 361 8.010733 TGAAACTGAATCTTTCAAGACCATTT 57.989 30.769 0.00 0.00 39.58 2.32
361 362 9.130661 TGAAACTGAATCTTTCAAGACCATTTA 57.869 29.630 0.00 0.00 39.58 1.40
364 365 9.918630 AACTGAATCTTTCAAGACCATTTATTG 57.081 29.630 0.00 0.00 39.58 1.90
365 366 9.082313 ACTGAATCTTTCAAGACCATTTATTGT 57.918 29.630 0.00 0.00 39.58 2.71
366 367 9.350357 CTGAATCTTTCAAGACCATTTATTGTG 57.650 33.333 0.00 0.00 39.58 3.33
367 368 8.859090 TGAATCTTTCAAGACCATTTATTGTGT 58.141 29.630 0.00 0.00 37.98 3.72
368 369 9.696917 GAATCTTTCAAGACCATTTATTGTGTT 57.303 29.630 0.00 0.00 37.98 3.32
369 370 9.480053 AATCTTTCAAGACCATTTATTGTGTTG 57.520 29.630 0.00 0.00 37.98 3.33
370 371 8.231692 TCTTTCAAGACCATTTATTGTGTTGA 57.768 30.769 3.39 3.39 41.32 3.18
371 372 8.859090 TCTTTCAAGACCATTTATTGTGTTGAT 58.141 29.630 7.16 0.00 42.19 2.57
372 373 9.480053 CTTTCAAGACCATTTATTGTGTTGATT 57.520 29.630 7.16 0.00 42.19 2.57
373 374 8.815141 TTCAAGACCATTTATTGTGTTGATTG 57.185 30.769 7.16 0.00 42.19 2.67
374 375 7.950512 TCAAGACCATTTATTGTGTTGATTGT 58.049 30.769 3.39 0.00 39.11 2.71
375 376 8.420222 TCAAGACCATTTATTGTGTTGATTGTT 58.580 29.630 3.39 0.00 39.11 2.83
376 377 8.489559 CAAGACCATTTATTGTGTTGATTGTTG 58.510 33.333 0.00 0.00 37.80 3.33
377 378 7.950512 AGACCATTTATTGTGTTGATTGTTGA 58.049 30.769 0.00 0.00 0.00 3.18
378 379 8.420222 AGACCATTTATTGTGTTGATTGTTGAA 58.580 29.630 0.00 0.00 0.00 2.69
379 380 8.954950 ACCATTTATTGTGTTGATTGTTGAAA 57.045 26.923 0.00 0.00 0.00 2.69
380 381 9.388506 ACCATTTATTGTGTTGATTGTTGAAAA 57.611 25.926 0.00 0.00 0.00 2.29
395 396 4.596801 TTGAAAACACTTGCATTTGTGC 57.403 36.364 12.82 0.00 37.68 4.57
396 397 3.859443 TGAAAACACTTGCATTTGTGCT 58.141 36.364 12.82 1.27 37.68 4.40
397 398 4.252073 TGAAAACACTTGCATTTGTGCTT 58.748 34.783 12.82 6.43 37.68 3.91
398 399 4.694509 TGAAAACACTTGCATTTGTGCTTT 59.305 33.333 12.79 12.79 35.87 3.51
399 400 5.871524 TGAAAACACTTGCATTTGTGCTTTA 59.128 32.000 12.82 4.05 34.11 1.85
400 401 6.369890 TGAAAACACTTGCATTTGTGCTTTAA 59.630 30.769 12.82 6.09 34.11 1.52
401 402 6.923928 AAACACTTGCATTTGTGCTTTAAT 57.076 29.167 12.82 0.00 37.68 1.40
402 403 6.923928 AACACTTGCATTTGTGCTTTAATT 57.076 29.167 12.82 0.00 37.68 1.40
403 404 6.923928 ACACTTGCATTTGTGCTTTAATTT 57.076 29.167 12.82 0.00 37.68 1.82
404 405 7.319142 ACACTTGCATTTGTGCTTTAATTTT 57.681 28.000 12.82 0.00 37.68 1.82
405 406 7.760437 ACACTTGCATTTGTGCTTTAATTTTT 58.240 26.923 12.82 0.00 37.68 1.94
424 425 3.907894 TTTTGTCCTAACATGTTCGCC 57.092 42.857 15.85 2.93 34.73 5.54
425 426 1.816074 TTGTCCTAACATGTTCGCCC 58.184 50.000 15.85 2.94 34.73 6.13
426 427 0.035820 TGTCCTAACATGTTCGCCCC 60.036 55.000 15.85 1.49 0.00 5.80
427 428 1.087771 GTCCTAACATGTTCGCCCCG 61.088 60.000 15.85 0.00 0.00 5.73
428 429 1.817941 CCTAACATGTTCGCCCCGG 60.818 63.158 15.85 0.00 0.00 5.73
429 430 2.437002 TAACATGTTCGCCCCGGC 60.437 61.111 15.85 0.00 37.85 6.13
430 431 2.869503 CTAACATGTTCGCCCCGGCT 62.870 60.000 15.85 0.00 39.32 5.52
431 432 1.615165 TAACATGTTCGCCCCGGCTA 61.615 55.000 15.85 0.00 39.32 3.93
432 433 2.124901 CATGTTCGCCCCGGCTAA 60.125 61.111 3.84 0.00 39.32 3.09
433 434 2.124860 ATGTTCGCCCCGGCTAAC 60.125 61.111 14.47 14.47 43.96 2.34
434 435 2.666098 ATGTTCGCCCCGGCTAACT 61.666 57.895 20.05 6.88 44.01 2.24
435 436 2.046604 GTTCGCCCCGGCTAACTT 60.047 61.111 14.16 0.00 41.59 2.66
436 437 2.046700 TTCGCCCCGGCTAACTTG 60.047 61.111 3.84 0.00 39.32 3.16
437 438 2.585341 TTCGCCCCGGCTAACTTGA 61.585 57.895 3.84 0.00 39.32 3.02
438 439 2.046700 CGCCCCGGCTAACTTGAA 60.047 61.111 3.84 0.00 39.32 2.69
439 440 1.451387 CGCCCCGGCTAACTTGAAT 60.451 57.895 3.84 0.00 39.32 2.57
440 441 1.029947 CGCCCCGGCTAACTTGAATT 61.030 55.000 3.84 0.00 39.32 2.17
441 442 1.182667 GCCCCGGCTAACTTGAATTT 58.817 50.000 0.00 0.00 38.26 1.82
442 443 1.134367 GCCCCGGCTAACTTGAATTTC 59.866 52.381 0.00 0.00 38.26 2.17
443 444 2.723273 CCCCGGCTAACTTGAATTTCT 58.277 47.619 0.00 0.00 0.00 2.52
444 445 2.423538 CCCCGGCTAACTTGAATTTCTG 59.576 50.000 0.00 0.00 0.00 3.02
445 446 2.423538 CCCGGCTAACTTGAATTTCTGG 59.576 50.000 0.00 0.00 0.00 3.86
446 447 2.423538 CCGGCTAACTTGAATTTCTGGG 59.576 50.000 0.00 0.00 0.00 4.45
447 448 3.081804 CGGCTAACTTGAATTTCTGGGT 58.918 45.455 0.00 0.00 0.00 4.51
448 449 3.127030 CGGCTAACTTGAATTTCTGGGTC 59.873 47.826 0.00 0.00 0.00 4.46
449 450 3.444034 GGCTAACTTGAATTTCTGGGTCC 59.556 47.826 0.00 0.00 0.00 4.46
450 451 3.127030 GCTAACTTGAATTTCTGGGTCCG 59.873 47.826 0.00 0.00 0.00 4.79
451 452 1.534729 ACTTGAATTTCTGGGTCCGC 58.465 50.000 0.00 0.00 0.00 5.54
452 453 0.811281 CTTGAATTTCTGGGTCCGCC 59.189 55.000 0.00 0.00 0.00 6.13
453 454 0.111446 TTGAATTTCTGGGTCCGCCA 59.889 50.000 0.00 0.00 36.17 5.69
454 455 0.322456 TGAATTTCTGGGTCCGCCAG 60.322 55.000 0.00 0.00 36.17 4.85
455 456 0.322546 GAATTTCTGGGTCCGCCAGT 60.323 55.000 7.35 0.00 36.73 4.00
456 457 0.609131 AATTTCTGGGTCCGCCAGTG 60.609 55.000 7.35 0.00 36.73 3.66
457 458 2.484287 ATTTCTGGGTCCGCCAGTGG 62.484 60.000 4.20 4.20 36.73 4.00
482 483 2.962253 CGCGCCTTTCTCCGATCC 60.962 66.667 0.00 0.00 0.00 3.36
563 569 0.734889 GAAAGCACATCCGGACATGG 59.265 55.000 6.12 0.00 0.00 3.66
608 614 3.010472 TCCAATCTGCTTCTTCCCATGAA 59.990 43.478 0.00 0.00 0.00 2.57
611 617 5.451520 CCAATCTGCTTCTTCCCATGAATTC 60.452 44.000 0.00 0.00 0.00 2.17
625 631 1.918262 TGAATTCCCTGCATCACTCCT 59.082 47.619 2.27 0.00 0.00 3.69
626 632 3.114606 TGAATTCCCTGCATCACTCCTA 58.885 45.455 2.27 0.00 0.00 2.94
627 633 3.523157 TGAATTCCCTGCATCACTCCTAA 59.477 43.478 2.27 0.00 0.00 2.69
638 644 4.697352 GCATCACTCCTAAAACATCAGTGT 59.303 41.667 0.00 0.00 41.28 3.55
759 1063 2.567985 CCAACGTGGAAAGTACAAGGT 58.432 47.619 0.00 0.00 40.96 3.50
954 1324 3.835955 ATCGCTGCGCTCTGCTCT 61.836 61.111 18.65 0.00 46.63 4.09
956 1326 4.495336 CGCTGCGCTCTGCTCTCT 62.495 66.667 9.88 0.00 46.63 3.10
958 1328 2.104729 CTGCGCTCTGCTCTCTCC 59.895 66.667 9.73 0.00 46.63 3.71
960 1330 4.567385 GCGCTCTGCTCTCTCCCG 62.567 72.222 0.00 0.00 41.73 5.14
961 1331 3.898509 CGCTCTGCTCTCTCCCGG 61.899 72.222 0.00 0.00 0.00 5.73
962 1332 4.219999 GCTCTGCTCTCTCCCGGC 62.220 72.222 0.00 0.00 0.00 6.13
963 1333 2.441901 CTCTGCTCTCTCCCGGCT 60.442 66.667 0.00 0.00 0.00 5.52
964 1334 1.152860 CTCTGCTCTCTCCCGGCTA 60.153 63.158 0.00 0.00 0.00 3.93
980 1350 3.747854 GGCTACGCCTATATAATCCCC 57.252 52.381 0.00 0.00 46.69 4.81
989 1359 3.385111 CCTATATAATCCCCCTCGCAGAC 59.615 52.174 0.00 0.00 0.00 3.51
1041 1411 2.185004 AACAATCCACCAACCTCTCG 57.815 50.000 0.00 0.00 0.00 4.04
1042 1412 1.056660 ACAATCCACCAACCTCTCGT 58.943 50.000 0.00 0.00 0.00 4.18
1045 1415 0.252284 ATCCACCAACCTCTCGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
1101 1506 4.598894 CTCCAGCTCCGGCGATGG 62.599 72.222 22.72 22.72 44.37 3.51
1430 1875 4.023783 CGGTATTGTTAAATTTCCGTCGC 58.976 43.478 0.00 0.00 37.33 5.19
1431 1876 4.023783 GGTATTGTTAAATTTCCGTCGCG 58.976 43.478 0.00 0.00 0.00 5.87
1432 1877 3.817148 ATTGTTAAATTTCCGTCGCGT 57.183 38.095 5.77 0.00 0.00 6.01
1433 1878 2.859870 TGTTAAATTTCCGTCGCGTC 57.140 45.000 5.77 0.00 0.00 5.19
1434 1879 2.133553 TGTTAAATTTCCGTCGCGTCA 58.866 42.857 5.77 0.00 0.00 4.35
1435 1880 2.156117 TGTTAAATTTCCGTCGCGTCAG 59.844 45.455 5.77 0.00 0.00 3.51
1545 2024 0.105964 TGGTTGGTGGTGAAGTCTCG 59.894 55.000 0.00 0.00 0.00 4.04
1636 2420 1.832167 ATCTCCTCCTCGAGCAGGC 60.832 63.158 18.27 0.00 43.08 4.85
1663 2447 3.754850 TCGATCGTAGGTCTTGTCTTCAA 59.245 43.478 15.94 0.00 0.00 2.69
1688 2472 4.736896 GCTGCTGCTTGCTTGGGC 62.737 66.667 8.53 0.00 43.37 5.36
1710 2499 3.038788 TGATTGTGTGCTCGTGTATGT 57.961 42.857 0.00 0.00 0.00 2.29
1726 2518 7.312154 TCGTGTATGTTACGGTACTGTAAAAT 58.688 34.615 26.32 26.32 41.58 1.82
1762 2556 2.230508 GCGAGTATTATGGTCCGATCCA 59.769 50.000 1.38 1.38 42.01 3.41
1786 2580 1.093972 TCCTTGCTTGTGTGTGTGTG 58.906 50.000 0.00 0.00 0.00 3.82
1787 2581 0.810648 CCTTGCTTGTGTGTGTGTGT 59.189 50.000 0.00 0.00 0.00 3.72
1792 2586 0.026674 CTTGTGTGTGTGTGTGCTCG 59.973 55.000 0.00 0.00 0.00 5.03
1863 2668 4.929808 ACTAAGCATTTCGTGTTACTGAGG 59.070 41.667 0.00 0.00 0.00 3.86
1921 2731 9.511144 AAGTTGTGTACTAACATTTTTGCTTAC 57.489 29.630 13.50 0.00 38.08 2.34
1932 2771 2.008242 TTTGCTTACCCCTGTGCATT 57.992 45.000 0.00 0.00 35.27 3.56
1974 2869 7.721399 ACTCCCTTTCAACATCATGGTAATATC 59.279 37.037 0.00 0.00 0.00 1.63
1980 2875 6.677552 TCAACATCATGGTAATATCCCCAAA 58.322 36.000 0.00 0.00 33.66 3.28
2061 2969 1.758514 GATCTCCCACAGGCCTCGA 60.759 63.158 0.00 0.00 0.00 4.04
2068 2976 1.043116 CCACAGGCCTCGATAGTCCA 61.043 60.000 0.00 0.00 37.40 4.02
2121 3034 1.212751 GATGCCAAACGCCTGGTTC 59.787 57.895 5.36 0.37 38.08 3.62
2155 3068 4.412207 GCAAACTAGCCCTAAACAAATCG 58.588 43.478 0.00 0.00 0.00 3.34
2208 3121 0.101939 GGCCAATTAGCAGCTTCAGC 59.898 55.000 0.00 0.00 42.49 4.26
2254 3173 0.111253 CTCCCCTGAAAGCAACCACT 59.889 55.000 0.00 0.00 0.00 4.00
2439 3374 2.806856 GCTGATCAAGCGCCTGACG 61.807 63.158 11.63 4.23 43.45 4.35
2462 3397 4.327627 GCTGTTCTTATTCGTCCTCAGTTC 59.672 45.833 0.00 0.00 0.00 3.01
2485 3420 2.093306 TCTTCCTATTGTGTGCCACG 57.907 50.000 0.00 0.00 37.14 4.94
2499 3434 1.599047 CCACGATCTTGACCTGCCT 59.401 57.895 0.00 0.00 0.00 4.75
2502 3437 2.271800 CACGATCTTGACCTGCCTTAC 58.728 52.381 0.00 0.00 0.00 2.34
2510 3445 2.351276 CCTGCCTTACCCGCTTGT 59.649 61.111 0.00 0.00 0.00 3.16
2512 3447 2.047655 TGCCTTACCCGCTTGTCG 60.048 61.111 0.00 0.00 38.08 4.35
2607 3542 3.672447 TGCTTACCGCCGTCACGA 61.672 61.111 0.00 0.00 38.05 4.35
2707 3642 0.387367 CACTTCTGTCTGGGACGTCG 60.387 60.000 9.92 0.00 34.95 5.12
2794 3729 1.442857 GTGTCGCTCCTCACGTCAG 60.443 63.158 0.00 0.00 29.68 3.51
2805 3740 2.203788 ACGTCAGCCCCCTCTTCA 60.204 61.111 0.00 0.00 0.00 3.02
2810 3745 2.204213 AGCCCCCTCTTCAGCCTT 60.204 61.111 0.00 0.00 0.00 4.35
2814 3749 1.301293 CCCCTCTTCAGCCTTGTCC 59.699 63.158 0.00 0.00 0.00 4.02
2822 3757 1.533625 TCAGCCTTGTCCCAAAATCG 58.466 50.000 0.00 0.00 0.00 3.34
2840 3775 1.472082 TCGACCGATGCATGCAAAAAT 59.528 42.857 26.68 8.07 0.00 1.82
2913 3851 3.389656 AGAAGGCTGGCTTTATAGGAGAC 59.610 47.826 18.04 1.89 0.00 3.36
2930 3869 2.151202 AGACAATCGCCGTTCATGTTT 58.849 42.857 0.00 0.00 0.00 2.83
2933 3872 2.034053 ACAATCGCCGTTCATGTTTGTT 59.966 40.909 0.00 0.00 0.00 2.83
2957 3896 2.031012 CTCTTGCACACTGGCGGA 59.969 61.111 0.00 0.00 36.28 5.54
2958 3897 2.280797 TCTTGCACACTGGCGGAC 60.281 61.111 0.00 0.00 36.28 4.79
2975 3914 3.017265 GGACGACCGTAGTTGAAAGAA 57.983 47.619 0.00 0.00 0.00 2.52
2982 3921 3.244112 ACCGTAGTTGAAAGAAGGGTCAG 60.244 47.826 0.00 0.00 0.00 3.51
3404 4344 3.697045 ACACTTTTTGGTTGATGTTCCGA 59.303 39.130 0.00 0.00 0.00 4.55
3452 4595 4.879104 ACTCATAGTTCTCCGACTAACG 57.121 45.455 0.00 0.00 35.86 3.18
3456 4599 5.664457 TCATAGTTCTCCGACTAACGTCTA 58.336 41.667 0.00 0.00 40.78 2.59
3458 4601 6.765036 TCATAGTTCTCCGACTAACGTCTATT 59.235 38.462 0.00 0.00 40.78 1.73
3491 4635 3.814625 TCAGGTTGTGCAAGTTCACATA 58.185 40.909 8.37 0.00 45.26 2.29
3505 4649 6.932356 AGTTCACATATGTTGTCATGATCC 57.068 37.500 5.37 0.00 36.00 3.36
3510 4654 1.290203 ATGTTGTCATGATCCGTCGC 58.710 50.000 0.00 0.00 32.51 5.19
3544 4688 4.593634 GGTCCTAATACTCAACAGGGCTAT 59.406 45.833 0.00 0.00 33.17 2.97
3549 4693 5.810080 AATACTCAACAGGGCTATAGTCC 57.190 43.478 16.06 16.06 40.99 3.85
3573 4717 1.151668 CAAAGCGAGCTTGTAGCACT 58.848 50.000 11.38 0.00 45.56 4.40
3710 4854 2.313317 TGGTATCTACAAGGTAGCCCG 58.687 52.381 0.00 0.00 35.12 6.13
3741 4885 5.863935 GGTGATGGCTTTGAAAACATAGTTC 59.136 40.000 0.00 0.00 0.00 3.01
3768 4912 4.444876 GGAGGAGCTTGGTTGATAGCAATA 60.445 45.833 0.00 0.00 40.65 1.90
3807 4951 2.964464 TCTCTGCAGGAGATTGAGATCC 59.036 50.000 15.13 0.00 45.20 3.36
3808 4952 2.037511 CTCTGCAGGAGATTGAGATCCC 59.962 54.545 15.13 0.00 44.45 3.85
3809 4953 1.767088 CTGCAGGAGATTGAGATCCCA 59.233 52.381 5.57 0.00 36.14 4.37
3810 4954 2.172082 CTGCAGGAGATTGAGATCCCAA 59.828 50.000 5.57 0.00 36.14 4.12
3811 4955 2.577563 TGCAGGAGATTGAGATCCCAAA 59.422 45.455 0.00 0.00 36.14 3.28
3813 4957 3.371380 GCAGGAGATTGAGATCCCAAAGT 60.371 47.826 0.00 0.00 36.14 2.66
3814 4958 4.141620 GCAGGAGATTGAGATCCCAAAGTA 60.142 45.833 0.00 0.00 36.14 2.24
3815 4959 5.455899 GCAGGAGATTGAGATCCCAAAGTAT 60.456 44.000 0.00 0.00 36.14 2.12
3816 4960 5.996513 CAGGAGATTGAGATCCCAAAGTATG 59.003 44.000 0.00 0.00 36.14 2.39
3819 4963 6.183361 GGAGATTGAGATCCCAAAGTATGAGT 60.183 42.308 0.00 0.00 32.44 3.41
3821 4965 6.385176 AGATTGAGATCCCAAAGTATGAGTGA 59.615 38.462 0.00 0.00 32.44 3.41
3825 4969 6.126863 AGATCCCAAAGTATGAGTGACAAA 57.873 37.500 0.00 0.00 0.00 2.83
3850 4994 4.415596 TCCCAAAGTATGAGTGCCAAATT 58.584 39.130 0.00 0.00 0.00 1.82
3854 4998 6.096705 CCCAAAGTATGAGTGCCAAATTCATA 59.903 38.462 0.00 0.00 33.81 2.15
3867 5012 6.888088 TGCCAAATTCATATATCCTCTCATGG 59.112 38.462 0.00 0.00 0.00 3.66
3870 5015 7.282675 CCAAATTCATATATCCTCTCATGGAGC 59.717 40.741 5.86 0.00 39.78 4.70
3943 5088 6.015772 CCAATGCATACAATCAATGGATCTGA 60.016 38.462 0.00 0.00 34.71 3.27
3945 5090 6.381481 TGCATACAATCAATGGATCTGAAC 57.619 37.500 0.00 0.00 26.22 3.18
3953 5098 3.117776 TCAATGGATCTGAACATCCCTGG 60.118 47.826 0.00 0.00 41.78 4.45
3957 5102 0.549950 ATCTGAACATCCCTGGCCAG 59.450 55.000 26.87 26.87 0.00 4.85
4011 5156 0.539438 TGTGTTCCTCATTGGGTGCC 60.539 55.000 0.00 0.00 36.20 5.01
4016 5161 0.846427 TCCTCATTGGGTGCCCTCTT 60.846 55.000 8.91 0.00 36.94 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.485463 TCTTTTCTTCCTTCTTCGCCA 57.515 42.857 0.00 0.00 0.00 5.69
1 2 3.127721 CCATCTTTTCTTCCTTCTTCGCC 59.872 47.826 0.00 0.00 0.00 5.54
2 3 3.127721 CCCATCTTTTCTTCCTTCTTCGC 59.872 47.826 0.00 0.00 0.00 4.70
3 4 3.127721 GCCCATCTTTTCTTCCTTCTTCG 59.872 47.826 0.00 0.00 0.00 3.79
4 5 3.445450 GGCCCATCTTTTCTTCCTTCTTC 59.555 47.826 0.00 0.00 0.00 2.87
5 6 3.076634 AGGCCCATCTTTTCTTCCTTCTT 59.923 43.478 0.00 0.00 0.00 2.52
7 8 3.093057 AGGCCCATCTTTTCTTCCTTC 57.907 47.619 0.00 0.00 0.00 3.46
8 9 3.852578 TCTAGGCCCATCTTTTCTTCCTT 59.147 43.478 0.00 0.00 0.00 3.36
11 12 3.198872 CGTCTAGGCCCATCTTTTCTTC 58.801 50.000 0.00 0.00 0.00 2.87
12 13 2.092914 CCGTCTAGGCCCATCTTTTCTT 60.093 50.000 0.00 0.00 0.00 2.52
14 15 1.954927 CCGTCTAGGCCCATCTTTTC 58.045 55.000 0.00 0.00 0.00 2.29
25 26 0.608640 ACAAAGTCCAGCCGTCTAGG 59.391 55.000 0.00 0.00 44.97 3.02
26 27 1.673033 CCACAAAGTCCAGCCGTCTAG 60.673 57.143 0.00 0.00 0.00 2.43
27 28 0.320374 CCACAAAGTCCAGCCGTCTA 59.680 55.000 0.00 0.00 0.00 2.59
28 29 1.071471 CCACAAAGTCCAGCCGTCT 59.929 57.895 0.00 0.00 0.00 4.18
29 30 1.966451 CCCACAAAGTCCAGCCGTC 60.966 63.158 0.00 0.00 0.00 4.79
30 31 2.113139 CCCACAAAGTCCAGCCGT 59.887 61.111 0.00 0.00 0.00 5.68
31 32 3.365265 GCCCACAAAGTCCAGCCG 61.365 66.667 0.00 0.00 0.00 5.52
32 33 1.115326 AAAGCCCACAAAGTCCAGCC 61.115 55.000 0.00 0.00 0.00 4.85
34 35 2.863809 ACTAAAGCCCACAAAGTCCAG 58.136 47.619 0.00 0.00 0.00 3.86
36 37 4.395625 ACTAACTAAAGCCCACAAAGTCC 58.604 43.478 0.00 0.00 0.00 3.85
37 38 5.298527 ACAACTAACTAAAGCCCACAAAGTC 59.701 40.000 0.00 0.00 0.00 3.01
38 39 5.067283 CACAACTAACTAAAGCCCACAAAGT 59.933 40.000 0.00 0.00 0.00 2.66
39 40 5.507315 CCACAACTAACTAAAGCCCACAAAG 60.507 44.000 0.00 0.00 0.00 2.77
40 41 4.339814 CCACAACTAACTAAAGCCCACAAA 59.660 41.667 0.00 0.00 0.00 2.83
41 42 3.886505 CCACAACTAACTAAAGCCCACAA 59.113 43.478 0.00 0.00 0.00 3.33
42 43 3.136809 TCCACAACTAACTAAAGCCCACA 59.863 43.478 0.00 0.00 0.00 4.17
44 45 4.394729 CTTCCACAACTAACTAAAGCCCA 58.605 43.478 0.00 0.00 0.00 5.36
45 46 3.756963 CCTTCCACAACTAACTAAAGCCC 59.243 47.826 0.00 0.00 0.00 5.19
46 47 3.190744 GCCTTCCACAACTAACTAAAGCC 59.809 47.826 0.00 0.00 0.00 4.35
47 48 3.190744 GGCCTTCCACAACTAACTAAAGC 59.809 47.826 0.00 0.00 0.00 3.51
51 52 2.340731 TGGGCCTTCCACAACTAACTA 58.659 47.619 4.53 0.00 41.46 2.24
52 53 1.145571 TGGGCCTTCCACAACTAACT 58.854 50.000 4.53 0.00 41.46 2.24
53 54 3.737702 TGGGCCTTCCACAACTAAC 57.262 52.632 4.53 0.00 41.46 2.34
73 74 8.722394 GGTGTGTTGGTTTCTGAAAAATAAAAA 58.278 29.630 4.09 0.00 0.00 1.94
74 75 7.878127 TGGTGTGTTGGTTTCTGAAAAATAAAA 59.122 29.630 4.09 0.00 0.00 1.52
75 76 7.386851 TGGTGTGTTGGTTTCTGAAAAATAAA 58.613 30.769 4.09 0.00 0.00 1.40
76 77 6.936279 TGGTGTGTTGGTTTCTGAAAAATAA 58.064 32.000 4.09 0.00 0.00 1.40
77 78 6.406400 CCTGGTGTGTTGGTTTCTGAAAAATA 60.406 38.462 4.09 0.00 0.00 1.40
78 79 5.413309 TGGTGTGTTGGTTTCTGAAAAAT 57.587 34.783 4.09 0.00 0.00 1.82
79 80 4.322349 CCTGGTGTGTTGGTTTCTGAAAAA 60.322 41.667 4.09 0.00 0.00 1.94
80 81 3.194542 CCTGGTGTGTTGGTTTCTGAAAA 59.805 43.478 4.09 0.00 0.00 2.29
81 82 2.757868 CCTGGTGTGTTGGTTTCTGAAA 59.242 45.455 0.00 0.00 0.00 2.69
82 83 2.291282 ACCTGGTGTGTTGGTTTCTGAA 60.291 45.455 0.00 0.00 0.00 3.02
83 84 1.283613 ACCTGGTGTGTTGGTTTCTGA 59.716 47.619 0.00 0.00 0.00 3.27
84 85 1.762708 ACCTGGTGTGTTGGTTTCTG 58.237 50.000 0.00 0.00 0.00 3.02
85 86 2.240160 TGTACCTGGTGTGTTGGTTTCT 59.760 45.455 10.23 0.00 35.48 2.52
90 91 2.762745 GTAGTGTACCTGGTGTGTTGG 58.237 52.381 10.23 0.00 0.00 3.77
91 92 2.400399 CGTAGTGTACCTGGTGTGTTG 58.600 52.381 10.23 0.00 0.00 3.33
93 94 0.316204 GCGTAGTGTACCTGGTGTGT 59.684 55.000 10.23 0.00 0.00 3.72
94 95 0.731514 CGCGTAGTGTACCTGGTGTG 60.732 60.000 10.23 0.00 0.00 3.82
96 97 1.804326 GCGCGTAGTGTACCTGGTG 60.804 63.158 10.23 0.00 41.96 4.17
97 98 2.270257 TGCGCGTAGTGTACCTGGT 61.270 57.895 8.43 4.05 41.96 4.00
103 104 2.202388 GCTCGTGCGCGTAGTGTA 60.202 61.111 20.50 0.00 41.96 2.90
105 106 4.778415 AGGCTCGTGCGCGTAGTG 62.778 66.667 20.50 9.60 40.82 2.74
106 107 4.778415 CAGGCTCGTGCGCGTAGT 62.778 66.667 20.50 0.00 40.82 2.73
107 108 4.778415 ACAGGCTCGTGCGCGTAG 62.778 66.667 20.50 15.92 40.82 3.51
108 109 4.351938 AACAGGCTCGTGCGCGTA 62.352 61.111 20.50 0.00 40.82 4.42
119 120 8.971501 AATAGAACTATTCAACAGCCAACAGGC 61.972 40.741 0.00 0.00 38.75 4.85
120 121 4.074970 AGAACTATTCAACAGCCAACAGG 58.925 43.478 0.00 0.00 0.00 4.00
121 122 6.992063 ATAGAACTATTCAACAGCCAACAG 57.008 37.500 0.00 0.00 0.00 3.16
122 123 7.759489 AAATAGAACTATTCAACAGCCAACA 57.241 32.000 7.41 0.00 34.90 3.33
123 124 8.947115 ACTAAATAGAACTATTCAACAGCCAAC 58.053 33.333 7.41 0.00 34.90 3.77
139 140 9.042008 GCTCCAATCGAACAATACTAAATAGAA 57.958 33.333 0.00 0.00 0.00 2.10
140 141 8.201464 TGCTCCAATCGAACAATACTAAATAGA 58.799 33.333 0.00 0.00 0.00 1.98
141 142 8.276325 GTGCTCCAATCGAACAATACTAAATAG 58.724 37.037 0.00 0.00 0.00 1.73
142 143 7.985184 AGTGCTCCAATCGAACAATACTAAATA 59.015 33.333 0.00 0.00 0.00 1.40
143 144 6.823689 AGTGCTCCAATCGAACAATACTAAAT 59.176 34.615 0.00 0.00 0.00 1.40
144 145 6.092122 CAGTGCTCCAATCGAACAATACTAAA 59.908 38.462 0.00 0.00 0.00 1.85
145 146 5.580691 CAGTGCTCCAATCGAACAATACTAA 59.419 40.000 0.00 0.00 0.00 2.24
146 147 5.109210 CAGTGCTCCAATCGAACAATACTA 58.891 41.667 0.00 0.00 0.00 1.82
147 148 3.935203 CAGTGCTCCAATCGAACAATACT 59.065 43.478 0.00 0.00 0.00 2.12
148 149 3.485877 GCAGTGCTCCAATCGAACAATAC 60.486 47.826 8.18 0.00 0.00 1.89
149 150 2.677836 GCAGTGCTCCAATCGAACAATA 59.322 45.455 8.18 0.00 0.00 1.90
150 151 1.470098 GCAGTGCTCCAATCGAACAAT 59.530 47.619 8.18 0.00 0.00 2.71
151 152 0.874390 GCAGTGCTCCAATCGAACAA 59.126 50.000 8.18 0.00 0.00 2.83
152 153 0.955428 GGCAGTGCTCCAATCGAACA 60.955 55.000 16.11 0.00 0.00 3.18
153 154 0.674895 AGGCAGTGCTCCAATCGAAC 60.675 55.000 16.11 0.00 0.00 3.95
154 155 0.036732 AAGGCAGTGCTCCAATCGAA 59.963 50.000 16.11 0.00 0.00 3.71
155 156 0.391661 GAAGGCAGTGCTCCAATCGA 60.392 55.000 16.11 0.00 0.00 3.59
156 157 1.372087 GGAAGGCAGTGCTCCAATCG 61.372 60.000 16.11 0.00 0.00 3.34
157 158 0.322816 TGGAAGGCAGTGCTCCAATC 60.323 55.000 20.62 9.75 36.30 2.67
158 159 0.112995 TTGGAAGGCAGTGCTCCAAT 59.887 50.000 26.72 6.56 42.86 3.16
159 160 0.106268 TTTGGAAGGCAGTGCTCCAA 60.106 50.000 26.72 26.72 45.36 3.53
160 161 0.112995 ATTTGGAAGGCAGTGCTCCA 59.887 50.000 19.38 19.38 37.47 3.86
161 162 1.203287 GAATTTGGAAGGCAGTGCTCC 59.797 52.381 16.11 15.44 0.00 4.70
162 163 1.203287 GGAATTTGGAAGGCAGTGCTC 59.797 52.381 16.11 5.37 0.00 4.26
163 164 1.260544 GGAATTTGGAAGGCAGTGCT 58.739 50.000 16.11 0.00 0.00 4.40
164 165 0.968405 TGGAATTTGGAAGGCAGTGC 59.032 50.000 6.55 6.55 0.00 4.40
165 166 3.368739 GGATTGGAATTTGGAAGGCAGTG 60.369 47.826 0.00 0.00 0.00 3.66
166 167 2.833943 GGATTGGAATTTGGAAGGCAGT 59.166 45.455 0.00 0.00 0.00 4.40
167 168 2.169144 GGGATTGGAATTTGGAAGGCAG 59.831 50.000 0.00 0.00 0.00 4.85
168 169 2.187100 GGGATTGGAATTTGGAAGGCA 58.813 47.619 0.00 0.00 0.00 4.75
169 170 2.470990 AGGGATTGGAATTTGGAAGGC 58.529 47.619 0.00 0.00 0.00 4.35
170 171 3.638627 GCTAGGGATTGGAATTTGGAAGG 59.361 47.826 0.00 0.00 0.00 3.46
171 172 3.638627 GGCTAGGGATTGGAATTTGGAAG 59.361 47.826 0.00 0.00 0.00 3.46
172 173 3.012274 TGGCTAGGGATTGGAATTTGGAA 59.988 43.478 0.00 0.00 0.00 3.53
173 174 2.584965 TGGCTAGGGATTGGAATTTGGA 59.415 45.455 0.00 0.00 0.00 3.53
174 175 3.030873 TGGCTAGGGATTGGAATTTGG 57.969 47.619 0.00 0.00 0.00 3.28
175 176 5.619132 AATTGGCTAGGGATTGGAATTTG 57.381 39.130 0.00 0.00 0.00 2.32
176 177 6.417258 CAAAATTGGCTAGGGATTGGAATTT 58.583 36.000 0.00 0.00 0.00 1.82
177 178 5.104402 CCAAAATTGGCTAGGGATTGGAATT 60.104 40.000 0.00 0.00 42.21 2.17
178 179 4.409901 CCAAAATTGGCTAGGGATTGGAAT 59.590 41.667 0.00 0.00 42.21 3.01
179 180 3.774216 CCAAAATTGGCTAGGGATTGGAA 59.226 43.478 0.00 0.00 42.21 3.53
180 181 3.373830 CCAAAATTGGCTAGGGATTGGA 58.626 45.455 0.00 0.00 42.21 3.53
181 182 3.825143 CCAAAATTGGCTAGGGATTGG 57.175 47.619 0.00 0.00 42.21 3.16
193 194 5.177327 GCAGTAACAACATGACCCAAAATTG 59.823 40.000 0.00 0.00 0.00 2.32
194 195 5.296748 GCAGTAACAACATGACCCAAAATT 58.703 37.500 0.00 0.00 0.00 1.82
195 196 4.262420 GGCAGTAACAACATGACCCAAAAT 60.262 41.667 0.00 0.00 0.00 1.82
196 197 3.068873 GGCAGTAACAACATGACCCAAAA 59.931 43.478 0.00 0.00 0.00 2.44
197 198 2.625790 GGCAGTAACAACATGACCCAAA 59.374 45.455 0.00 0.00 0.00 3.28
198 199 2.235016 GGCAGTAACAACATGACCCAA 58.765 47.619 0.00 0.00 0.00 4.12
199 200 1.143889 TGGCAGTAACAACATGACCCA 59.856 47.619 0.00 0.00 0.00 4.51
200 201 1.904287 TGGCAGTAACAACATGACCC 58.096 50.000 0.00 0.00 0.00 4.46
201 202 3.505680 TCATTGGCAGTAACAACATGACC 59.494 43.478 0.00 0.00 0.00 4.02
202 203 4.764679 TCATTGGCAGTAACAACATGAC 57.235 40.909 0.00 0.00 0.00 3.06
203 204 5.243507 ACATTCATTGGCAGTAACAACATGA 59.756 36.000 0.00 0.00 0.00 3.07
204 205 5.472148 ACATTCATTGGCAGTAACAACATG 58.528 37.500 0.00 0.00 0.00 3.21
205 206 5.726980 ACATTCATTGGCAGTAACAACAT 57.273 34.783 0.00 0.00 0.00 2.71
206 207 5.068329 TGAACATTCATTGGCAGTAACAACA 59.932 36.000 0.00 0.00 31.01 3.33
207 208 5.527951 TGAACATTCATTGGCAGTAACAAC 58.472 37.500 0.00 0.00 31.01 3.32
208 209 5.278907 CCTGAACATTCATTGGCAGTAACAA 60.279 40.000 0.00 0.00 36.46 2.83
209 210 4.218200 CCTGAACATTCATTGGCAGTAACA 59.782 41.667 0.00 0.00 36.46 2.41
210 211 4.737054 CCTGAACATTCATTGGCAGTAAC 58.263 43.478 0.00 0.00 36.46 2.50
211 212 3.193267 GCCTGAACATTCATTGGCAGTAA 59.807 43.478 16.18 0.00 43.89 2.24
212 213 2.754552 GCCTGAACATTCATTGGCAGTA 59.245 45.455 16.18 0.00 43.89 2.74
213 214 1.547372 GCCTGAACATTCATTGGCAGT 59.453 47.619 16.18 0.00 43.89 4.40
214 215 1.546923 TGCCTGAACATTCATTGGCAG 59.453 47.619 18.66 2.33 46.91 4.85
216 217 2.288948 TGTTGCCTGAACATTCATTGGC 60.289 45.455 14.84 14.84 44.40 4.52
217 218 3.663995 TGTTGCCTGAACATTCATTGG 57.336 42.857 0.00 0.00 39.78 3.16
218 219 4.873817 TCTTGTTGCCTGAACATTCATTG 58.126 39.130 0.00 0.00 44.23 2.82
219 220 4.021719 CCTCTTGTTGCCTGAACATTCATT 60.022 41.667 0.00 0.00 44.23 2.57
220 221 3.508793 CCTCTTGTTGCCTGAACATTCAT 59.491 43.478 0.00 0.00 44.23 2.57
221 222 2.886523 CCTCTTGTTGCCTGAACATTCA 59.113 45.455 0.00 0.00 44.23 2.57
222 223 2.352127 GCCTCTTGTTGCCTGAACATTC 60.352 50.000 0.00 0.00 44.23 2.67
223 224 1.615392 GCCTCTTGTTGCCTGAACATT 59.385 47.619 0.00 0.00 44.23 2.71
224 225 1.251251 GCCTCTTGTTGCCTGAACAT 58.749 50.000 0.00 0.00 44.23 2.71
225 226 0.823356 GGCCTCTTGTTGCCTGAACA 60.823 55.000 0.00 0.00 44.46 3.18
226 227 1.959848 GGCCTCTTGTTGCCTGAAC 59.040 57.895 0.00 0.00 44.46 3.18
227 228 4.500265 GGCCTCTTGTTGCCTGAA 57.500 55.556 0.00 0.00 44.46 3.02
232 233 1.098050 CTACCATGGCCTCTTGTTGC 58.902 55.000 13.04 0.00 0.00 4.17
233 234 2.496899 ACTACCATGGCCTCTTGTTG 57.503 50.000 13.04 0.00 0.00 3.33
234 235 4.862641 ATTACTACCATGGCCTCTTGTT 57.137 40.909 13.04 0.00 0.00 2.83
235 236 4.862641 AATTACTACCATGGCCTCTTGT 57.137 40.909 13.04 1.83 0.00 3.16
236 237 5.297776 CAGAAATTACTACCATGGCCTCTTG 59.702 44.000 13.04 0.00 0.00 3.02
237 238 5.440610 CAGAAATTACTACCATGGCCTCTT 58.559 41.667 13.04 0.00 0.00 2.85
238 239 4.687219 GCAGAAATTACTACCATGGCCTCT 60.687 45.833 13.04 0.00 0.00 3.69
239 240 3.565902 GCAGAAATTACTACCATGGCCTC 59.434 47.826 13.04 0.00 0.00 4.70
240 241 3.555966 GCAGAAATTACTACCATGGCCT 58.444 45.455 13.04 0.00 0.00 5.19
241 242 2.623416 GGCAGAAATTACTACCATGGCC 59.377 50.000 13.04 0.00 0.00 5.36
242 243 3.287222 TGGCAGAAATTACTACCATGGC 58.713 45.455 13.04 0.00 29.44 4.40
243 244 5.593909 TCATTGGCAGAAATTACTACCATGG 59.406 40.000 11.19 11.19 33.90 3.66
244 245 6.698008 TCATTGGCAGAAATTACTACCATG 57.302 37.500 0.00 0.00 33.90 3.66
245 246 7.902920 ATTCATTGGCAGAAATTACTACCAT 57.097 32.000 0.00 0.00 33.90 3.55
246 247 8.052748 ACTATTCATTGGCAGAAATTACTACCA 58.947 33.333 0.00 0.00 32.20 3.25
247 248 8.451908 ACTATTCATTGGCAGAAATTACTACC 57.548 34.615 0.00 0.00 0.00 3.18
248 249 9.937175 GAACTATTCATTGGCAGAAATTACTAC 57.063 33.333 0.00 0.00 0.00 2.73
249 250 9.905713 AGAACTATTCATTGGCAGAAATTACTA 57.094 29.630 0.00 0.00 0.00 1.82
250 251 8.814038 AGAACTATTCATTGGCAGAAATTACT 57.186 30.769 0.00 0.00 0.00 2.24
256 257 9.905713 ACTAAATAGAACTATTCATTGGCAGAA 57.094 29.630 7.41 0.00 34.90 3.02
294 295 9.590451 CAACTACTAAGACCACGGAAAATTATA 57.410 33.333 0.00 0.00 0.00 0.98
295 296 8.316214 TCAACTACTAAGACCACGGAAAATTAT 58.684 33.333 0.00 0.00 0.00 1.28
296 297 7.669427 TCAACTACTAAGACCACGGAAAATTA 58.331 34.615 0.00 0.00 0.00 1.40
297 298 6.527423 TCAACTACTAAGACCACGGAAAATT 58.473 36.000 0.00 0.00 0.00 1.82
298 299 6.105397 TCAACTACTAAGACCACGGAAAAT 57.895 37.500 0.00 0.00 0.00 1.82
299 300 5.534207 TCAACTACTAAGACCACGGAAAA 57.466 39.130 0.00 0.00 0.00 2.29
300 301 5.534207 TTCAACTACTAAGACCACGGAAA 57.466 39.130 0.00 0.00 0.00 3.13
301 302 5.479375 AGATTCAACTACTAAGACCACGGAA 59.521 40.000 0.00 0.00 0.00 4.30
302 303 5.014858 AGATTCAACTACTAAGACCACGGA 58.985 41.667 0.00 0.00 0.00 4.69
303 304 5.326200 AGATTCAACTACTAAGACCACGG 57.674 43.478 0.00 0.00 0.00 4.94
304 305 8.407064 AGATAAGATTCAACTACTAAGACCACG 58.593 37.037 0.00 0.00 0.00 4.94
305 306 9.522804 CAGATAAGATTCAACTACTAAGACCAC 57.477 37.037 0.00 0.00 0.00 4.16
306 307 8.198109 GCAGATAAGATTCAACTACTAAGACCA 58.802 37.037 0.00 0.00 0.00 4.02
307 308 8.198109 TGCAGATAAGATTCAACTACTAAGACC 58.802 37.037 0.00 0.00 0.00 3.85
308 309 9.026074 GTGCAGATAAGATTCAACTACTAAGAC 57.974 37.037 0.00 0.00 0.00 3.01
309 310 8.972127 AGTGCAGATAAGATTCAACTACTAAGA 58.028 33.333 0.00 0.00 0.00 2.10
310 311 9.029243 CAGTGCAGATAAGATTCAACTACTAAG 57.971 37.037 0.00 0.00 0.00 2.18
311 312 8.749354 TCAGTGCAGATAAGATTCAACTACTAA 58.251 33.333 0.00 0.00 0.00 2.24
312 313 8.293699 TCAGTGCAGATAAGATTCAACTACTA 57.706 34.615 0.00 0.00 0.00 1.82
313 314 7.175347 TCAGTGCAGATAAGATTCAACTACT 57.825 36.000 0.00 0.00 0.00 2.57
314 315 7.834068 TTCAGTGCAGATAAGATTCAACTAC 57.166 36.000 0.00 0.00 0.00 2.73
315 316 8.097038 AGTTTCAGTGCAGATAAGATTCAACTA 58.903 33.333 0.00 0.00 0.00 2.24
316 317 6.939163 AGTTTCAGTGCAGATAAGATTCAACT 59.061 34.615 0.00 0.00 0.00 3.16
317 318 7.020010 CAGTTTCAGTGCAGATAAGATTCAAC 58.980 38.462 0.00 0.00 0.00 3.18
318 319 6.936335 TCAGTTTCAGTGCAGATAAGATTCAA 59.064 34.615 0.00 0.00 0.00 2.69
319 320 6.466812 TCAGTTTCAGTGCAGATAAGATTCA 58.533 36.000 0.00 0.00 0.00 2.57
320 321 6.974932 TCAGTTTCAGTGCAGATAAGATTC 57.025 37.500 0.00 0.00 0.00 2.52
321 322 7.828223 AGATTCAGTTTCAGTGCAGATAAGATT 59.172 33.333 0.00 0.00 0.00 2.40
322 323 7.337167 AGATTCAGTTTCAGTGCAGATAAGAT 58.663 34.615 0.00 0.00 0.00 2.40
323 324 6.705302 AGATTCAGTTTCAGTGCAGATAAGA 58.295 36.000 0.00 0.00 0.00 2.10
324 325 6.981762 AGATTCAGTTTCAGTGCAGATAAG 57.018 37.500 0.00 0.00 0.00 1.73
325 326 7.445096 TGAAAGATTCAGTTTCAGTGCAGATAA 59.555 33.333 0.00 0.00 38.66 1.75
326 327 6.936335 TGAAAGATTCAGTTTCAGTGCAGATA 59.064 34.615 0.00 0.00 38.66 1.98
327 328 5.766670 TGAAAGATTCAGTTTCAGTGCAGAT 59.233 36.000 0.00 0.00 38.66 2.90
328 329 5.125356 TGAAAGATTCAGTTTCAGTGCAGA 58.875 37.500 0.00 0.00 38.66 4.26
329 330 5.428496 TGAAAGATTCAGTTTCAGTGCAG 57.572 39.130 0.00 0.00 38.66 4.41
330 331 5.589855 TCTTGAAAGATTCAGTTTCAGTGCA 59.410 36.000 0.00 0.00 43.11 4.57
331 332 5.911838 GTCTTGAAAGATTCAGTTTCAGTGC 59.088 40.000 0.00 0.00 43.11 4.40
332 333 6.038603 TGGTCTTGAAAGATTCAGTTTCAGTG 59.961 38.462 0.00 0.00 43.11 3.66
333 334 6.122277 TGGTCTTGAAAGATTCAGTTTCAGT 58.878 36.000 0.00 0.00 43.11 3.41
334 335 6.624352 TGGTCTTGAAAGATTCAGTTTCAG 57.376 37.500 0.00 0.00 43.11 3.02
335 336 7.587037 AATGGTCTTGAAAGATTCAGTTTCA 57.413 32.000 0.00 0.00 41.16 2.69
338 339 9.918630 CAATAAATGGTCTTGAAAGATTCAGTT 57.081 29.630 12.85 12.85 41.38 3.16
339 340 9.082313 ACAATAAATGGTCTTGAAAGATTCAGT 57.918 29.630 0.00 0.00 41.38 3.41
340 341 9.350357 CACAATAAATGGTCTTGAAAGATTCAG 57.650 33.333 0.00 0.00 41.38 3.02
341 342 8.859090 ACACAATAAATGGTCTTGAAAGATTCA 58.141 29.630 0.00 0.00 37.39 2.57
342 343 9.696917 AACACAATAAATGGTCTTGAAAGATTC 57.303 29.630 0.00 0.00 37.39 2.52
343 344 9.480053 CAACACAATAAATGGTCTTGAAAGATT 57.520 29.630 0.00 0.00 37.39 2.40
344 345 8.859090 TCAACACAATAAATGGTCTTGAAAGAT 58.141 29.630 0.00 0.00 37.39 2.40
345 346 8.231692 TCAACACAATAAATGGTCTTGAAAGA 57.768 30.769 0.00 0.00 0.00 2.52
346 347 9.480053 AATCAACACAATAAATGGTCTTGAAAG 57.520 29.630 0.00 0.00 0.00 2.62
347 348 9.258826 CAATCAACACAATAAATGGTCTTGAAA 57.741 29.630 0.00 0.00 0.00 2.69
348 349 8.420222 ACAATCAACACAATAAATGGTCTTGAA 58.580 29.630 0.00 0.00 0.00 2.69
349 350 7.950512 ACAATCAACACAATAAATGGTCTTGA 58.049 30.769 0.00 0.00 0.00 3.02
350 351 8.489559 CAACAATCAACACAATAAATGGTCTTG 58.510 33.333 0.00 0.00 0.00 3.02
351 352 8.420222 TCAACAATCAACACAATAAATGGTCTT 58.580 29.630 0.00 0.00 0.00 3.01
352 353 7.950512 TCAACAATCAACACAATAAATGGTCT 58.049 30.769 0.00 0.00 0.00 3.85
353 354 8.586570 TTCAACAATCAACACAATAAATGGTC 57.413 30.769 0.00 0.00 0.00 4.02
354 355 8.954950 TTTCAACAATCAACACAATAAATGGT 57.045 26.923 0.00 0.00 0.00 3.55
355 356 9.649024 GTTTTCAACAATCAACACAATAAATGG 57.351 29.630 0.00 0.00 0.00 3.16
364 365 5.119898 TGCAAGTGTTTTCAACAATCAACAC 59.880 36.000 6.00 6.00 46.23 3.32
365 366 5.233225 TGCAAGTGTTTTCAACAATCAACA 58.767 33.333 0.00 0.00 44.16 3.33
366 367 5.776519 TGCAAGTGTTTTCAACAATCAAC 57.223 34.783 0.00 0.00 44.16 3.18
367 368 6.981762 AATGCAAGTGTTTTCAACAATCAA 57.018 29.167 0.00 0.00 44.16 2.57
368 369 6.370994 ACAAATGCAAGTGTTTTCAACAATCA 59.629 30.769 0.00 0.00 44.16 2.57
369 370 6.683708 CACAAATGCAAGTGTTTTCAACAATC 59.316 34.615 3.02 0.00 44.16 2.67
370 371 6.544622 CACAAATGCAAGTGTTTTCAACAAT 58.455 32.000 3.02 0.00 44.16 2.71
371 372 5.924786 CACAAATGCAAGTGTTTTCAACAA 58.075 33.333 3.02 0.00 44.16 2.83
372 373 5.527511 CACAAATGCAAGTGTTTTCAACA 57.472 34.783 3.02 0.00 39.52 3.33
403 404 3.004944 GGGCGAACATGTTAGGACAAAAA 59.995 43.478 18.67 0.00 39.66 1.94
404 405 2.554893 GGGCGAACATGTTAGGACAAAA 59.445 45.455 18.67 0.00 39.66 2.44
405 406 2.156098 GGGCGAACATGTTAGGACAAA 58.844 47.619 18.67 0.00 39.66 2.83
406 407 1.612199 GGGGCGAACATGTTAGGACAA 60.612 52.381 18.67 0.00 39.66 3.18
407 408 0.035820 GGGGCGAACATGTTAGGACA 60.036 55.000 18.67 0.00 40.71 4.02
408 409 1.087771 CGGGGCGAACATGTTAGGAC 61.088 60.000 18.67 12.62 0.00 3.85
409 410 1.219664 CGGGGCGAACATGTTAGGA 59.780 57.895 18.67 0.00 0.00 2.94
410 411 1.817941 CCGGGGCGAACATGTTAGG 60.818 63.158 18.67 11.82 0.00 2.69
411 412 2.469516 GCCGGGGCGAACATGTTAG 61.470 63.158 11.95 12.96 0.00 2.34
412 413 2.437002 GCCGGGGCGAACATGTTA 60.437 61.111 11.95 0.00 0.00 2.41
422 423 1.134367 GAAATTCAAGTTAGCCGGGGC 59.866 52.381 2.18 0.18 42.33 5.80
423 424 2.423538 CAGAAATTCAAGTTAGCCGGGG 59.576 50.000 2.18 0.00 0.00 5.73
424 425 2.423538 CCAGAAATTCAAGTTAGCCGGG 59.576 50.000 2.18 0.00 0.00 5.73
425 426 2.423538 CCCAGAAATTCAAGTTAGCCGG 59.576 50.000 0.00 0.00 0.00 6.13
426 427 3.081804 ACCCAGAAATTCAAGTTAGCCG 58.918 45.455 0.00 0.00 0.00 5.52
427 428 3.444034 GGACCCAGAAATTCAAGTTAGCC 59.556 47.826 0.00 0.00 0.00 3.93
428 429 3.127030 CGGACCCAGAAATTCAAGTTAGC 59.873 47.826 0.00 0.00 0.00 3.09
429 430 3.127030 GCGGACCCAGAAATTCAAGTTAG 59.873 47.826 0.00 0.00 0.00 2.34
430 431 3.078837 GCGGACCCAGAAATTCAAGTTA 58.921 45.455 0.00 0.00 0.00 2.24
431 432 1.886542 GCGGACCCAGAAATTCAAGTT 59.113 47.619 0.00 0.00 0.00 2.66
432 433 1.534729 GCGGACCCAGAAATTCAAGT 58.465 50.000 0.00 0.00 0.00 3.16
433 434 0.811281 GGCGGACCCAGAAATTCAAG 59.189 55.000 0.00 0.00 0.00 3.02
434 435 0.111446 TGGCGGACCCAGAAATTCAA 59.889 50.000 0.00 0.00 39.18 2.69
435 436 1.764422 TGGCGGACCCAGAAATTCA 59.236 52.632 0.00 0.00 39.18 2.57
436 437 4.734652 TGGCGGACCCAGAAATTC 57.265 55.556 0.00 0.00 39.18 2.17
443 444 3.716195 CATCCACTGGCGGACCCA 61.716 66.667 0.00 0.00 42.79 4.51
444 445 3.717294 ACATCCACTGGCGGACCC 61.717 66.667 0.00 0.00 38.07 4.46
445 446 2.436646 CACATCCACTGGCGGACC 60.437 66.667 0.00 0.00 38.07 4.46
446 447 1.003839 TTCACATCCACTGGCGGAC 60.004 57.895 0.00 0.00 38.07 4.79
447 448 1.003839 GTTCACATCCACTGGCGGA 60.004 57.895 0.00 0.00 40.07 5.54
448 449 2.390599 CGTTCACATCCACTGGCGG 61.391 63.158 0.00 0.00 0.00 6.13
449 450 3.027170 GCGTTCACATCCACTGGCG 62.027 63.158 0.00 0.00 0.00 5.69
450 451 2.870372 GCGTTCACATCCACTGGC 59.130 61.111 0.00 0.00 0.00 4.85
451 452 3.027170 GCGCGTTCACATCCACTGG 62.027 63.158 8.43 0.00 0.00 4.00
452 453 2.476051 GCGCGTTCACATCCACTG 59.524 61.111 8.43 0.00 0.00 3.66
453 454 2.731691 AAGGCGCGTTCACATCCACT 62.732 55.000 10.00 0.00 0.00 4.00
454 455 1.852067 AAAGGCGCGTTCACATCCAC 61.852 55.000 16.62 0.00 0.00 4.02
455 456 1.573829 GAAAGGCGCGTTCACATCCA 61.574 55.000 16.62 0.00 0.00 3.41
456 457 1.134694 GAAAGGCGCGTTCACATCC 59.865 57.895 16.62 0.00 0.00 3.51
457 458 0.095417 GAGAAAGGCGCGTTCACATC 59.905 55.000 16.62 9.83 0.00 3.06
525 529 2.229792 TCGCTTTCTTGCCACAAATCT 58.770 42.857 0.00 0.00 0.00 2.40
526 530 2.704725 TCGCTTTCTTGCCACAAATC 57.295 45.000 0.00 0.00 0.00 2.17
530 535 0.030638 GCTTTCGCTTTCTTGCCACA 59.969 50.000 0.00 0.00 0.00 4.17
557 563 0.315251 TCGATCCGCATCTCCATGTC 59.685 55.000 0.00 0.00 31.86 3.06
608 614 4.263905 TGTTTTAGGAGTGATGCAGGGAAT 60.264 41.667 0.00 0.00 0.00 3.01
611 617 3.071874 TGTTTTAGGAGTGATGCAGGG 57.928 47.619 0.00 0.00 0.00 4.45
625 631 4.689071 AGTCGTCACACACTGATGTTTTA 58.311 39.130 0.00 0.00 36.72 1.52
626 632 3.531538 AGTCGTCACACACTGATGTTTT 58.468 40.909 0.00 0.00 36.72 2.43
627 633 3.179443 AGTCGTCACACACTGATGTTT 57.821 42.857 0.00 0.00 36.72 2.83
638 644 1.370051 CGCTCGTCAAGTCGTCACA 60.370 57.895 0.00 0.00 0.00 3.58
720 1006 1.519246 CTGCTGCTGCTAGTGGCTA 59.481 57.895 17.00 0.00 42.39 3.93
769 1073 2.078392 TCTAAATTTTGGACGGTCGGC 58.922 47.619 0.00 0.00 0.00 5.54
925 1295 2.438434 AGCGATGGCCGGAAAAGG 60.438 61.111 5.05 0.00 41.24 3.11
962 1332 3.568853 CGAGGGGGATTATATAGGCGTAG 59.431 52.174 0.00 0.00 0.00 3.51
963 1333 3.559069 CGAGGGGGATTATATAGGCGTA 58.441 50.000 0.00 0.00 0.00 4.42
964 1334 2.385803 CGAGGGGGATTATATAGGCGT 58.614 52.381 0.00 0.00 0.00 5.68
972 1342 1.051812 CTGTCTGCGAGGGGGATTAT 58.948 55.000 0.00 0.00 0.00 1.28
980 1350 1.079543 CCAGGTTCTGTCTGCGAGG 60.080 63.158 0.00 0.00 0.00 4.63
1184 1601 4.099633 TGATGATCTTCTCCTTGACCTGT 58.900 43.478 9.75 0.00 0.00 4.00
1430 1875 3.168604 CTGACGCTGACGCTGACG 61.169 66.667 0.00 0.00 45.53 4.35
1431 1876 2.049985 ACTGACGCTGACGCTGAC 60.050 61.111 0.00 0.00 45.53 3.51
1432 1877 2.050077 CACTGACGCTGACGCTGA 60.050 61.111 0.00 0.00 45.53 4.26
1433 1878 3.108289 CCACTGACGCTGACGCTG 61.108 66.667 0.00 0.00 45.53 5.18
1434 1879 3.606662 ACCACTGACGCTGACGCT 61.607 61.111 0.00 0.00 45.53 5.07
1435 1880 3.406361 CACCACTGACGCTGACGC 61.406 66.667 0.00 0.00 45.53 5.19
1513 1984 1.285023 CAACCAGCAGCAGCAAGAC 59.715 57.895 3.17 0.00 45.49 3.01
1545 2024 2.030262 CCCGAGATGCTAGCAGCC 59.970 66.667 28.37 18.95 41.51 4.85
1636 2420 1.065701 CAAGACCTACGATCGACCAGG 59.934 57.143 24.34 24.08 0.00 4.45
1663 2447 1.731700 CAAGCAGCAGCACACAACT 59.268 52.632 3.17 0.00 45.49 3.16
1688 2472 3.433274 ACATACACGAGCACACAATCAAG 59.567 43.478 0.00 0.00 0.00 3.02
1710 2499 6.357579 TCCCTTCATTTTACAGTACCGTAA 57.642 37.500 0.00 0.00 0.00 3.18
1726 2518 0.755079 CTCGCTGATCCATCCCTTCA 59.245 55.000 0.00 0.00 0.00 3.02
1762 2556 2.233271 CACACACAAGCAAGGAAGGAT 58.767 47.619 0.00 0.00 0.00 3.24
1786 2580 2.928116 GGAACCACAATACTACGAGCAC 59.072 50.000 0.00 0.00 0.00 4.40
1787 2581 3.241067 GGAACCACAATACTACGAGCA 57.759 47.619 0.00 0.00 0.00 4.26
1835 2629 8.464404 TCAGTAACACGAAATGCTTAGTATACT 58.536 33.333 10.87 10.87 29.70 2.12
1836 2630 8.624701 TCAGTAACACGAAATGCTTAGTATAC 57.375 34.615 0.00 0.00 0.00 1.47
1921 2731 1.027357 GCACTCATAATGCACAGGGG 58.973 55.000 0.00 0.00 42.88 4.79
1932 2771 5.499004 AGGGAGTAACTTTTGCACTCATA 57.501 39.130 3.63 0.00 40.38 2.15
1991 2886 8.567285 AGATATCACCATCTTCTTTTTCGTTT 57.433 30.769 5.32 0.00 30.93 3.60
1994 2889 8.269424 CGTAAGATATCACCATCTTCTTTTTCG 58.731 37.037 5.32 0.00 42.83 3.46
2061 2969 3.864921 GCGGTGACTTGACTTTGGACTAT 60.865 47.826 0.00 0.00 0.00 2.12
2068 2976 1.597027 CGGGCGGTGACTTGACTTT 60.597 57.895 0.00 0.00 0.00 2.66
2182 3095 0.815615 CTGCTAATTGGCCCTCGTCC 60.816 60.000 11.64 0.00 0.00 4.79
2183 3096 1.440145 GCTGCTAATTGGCCCTCGTC 61.440 60.000 11.64 0.00 0.00 4.20
2193 3106 5.567138 ATTAAACGCTGAAGCTGCTAATT 57.433 34.783 0.90 0.00 39.32 1.40
2213 3126 8.090831 GGGAGCAAGAAAGTCAGAAAAATAATT 58.909 33.333 0.00 0.00 0.00 1.40
2222 3135 1.349026 CAGGGGAGCAAGAAAGTCAGA 59.651 52.381 0.00 0.00 0.00 3.27
2313 3246 0.466555 TTGGTATATTGGTGGGCGCC 60.467 55.000 21.18 21.18 0.00 6.53
2314 3247 1.616159 ATTGGTATATTGGTGGGCGC 58.384 50.000 0.00 0.00 0.00 6.53
2315 3248 4.000988 GACTATTGGTATATTGGTGGGCG 58.999 47.826 0.00 0.00 0.00 6.13
2316 3249 4.980573 TGACTATTGGTATATTGGTGGGC 58.019 43.478 0.00 0.00 0.00 5.36
2317 3250 5.945784 CCATGACTATTGGTATATTGGTGGG 59.054 44.000 0.00 0.00 0.00 4.61
2318 3251 5.945784 CCCATGACTATTGGTATATTGGTGG 59.054 44.000 0.00 0.00 31.99 4.61
2319 3252 6.778821 TCCCATGACTATTGGTATATTGGTG 58.221 40.000 0.00 0.00 31.99 4.17
2320 3253 7.581464 CGATCCCATGACTATTGGTATATTGGT 60.581 40.741 0.00 0.00 31.99 3.67
2321 3254 6.763135 CGATCCCATGACTATTGGTATATTGG 59.237 42.308 0.00 0.00 31.99 3.16
2322 3255 7.555965 TCGATCCCATGACTATTGGTATATTG 58.444 38.462 0.00 0.00 31.99 1.90
2323 3256 7.633772 GCTCGATCCCATGACTATTGGTATATT 60.634 40.741 0.00 0.00 31.99 1.28
2324 3257 6.183360 GCTCGATCCCATGACTATTGGTATAT 60.183 42.308 0.00 0.00 31.99 0.86
2325 3258 5.127194 GCTCGATCCCATGACTATTGGTATA 59.873 44.000 0.00 0.00 31.99 1.47
2439 3374 3.851098 ACTGAGGACGAATAAGAACAGC 58.149 45.455 0.00 0.00 0.00 4.40
2462 3397 3.942829 TGGCACACAATAGGAAGAAGAG 58.057 45.455 0.00 0.00 0.00 2.85
2485 3420 1.473434 CGGGTAAGGCAGGTCAAGATC 60.473 57.143 0.00 0.00 0.00 2.75
2559 3494 1.208165 GGATGTTGAGGGGAGGGTGT 61.208 60.000 0.00 0.00 0.00 4.16
2607 3542 1.929088 GGGGCTTAGAGGGGTGGTT 60.929 63.158 0.00 0.00 0.00 3.67
2630 3565 0.809385 GTCGTCGTCAGATCAAGGGA 59.191 55.000 0.00 0.00 0.00 4.20
2661 3596 2.028484 GTTGACCGGTGCGAGTGA 59.972 61.111 14.63 0.00 0.00 3.41
2707 3642 2.641559 GCTGCCACTGTGAGCAAC 59.358 61.111 19.46 13.98 38.82 4.17
2774 3709 0.604511 TGACGTGAGGAGCGACACTA 60.605 55.000 0.00 0.00 35.23 2.74
2794 3729 2.044551 CAAGGCTGAAGAGGGGGC 60.045 66.667 0.00 0.00 0.00 5.80
2810 3745 1.732941 CATCGGTCGATTTTGGGACA 58.267 50.000 2.84 0.00 34.87 4.02
2814 3749 1.861202 GCATGCATCGGTCGATTTTGG 60.861 52.381 14.21 0.00 31.62 3.28
2822 3757 4.666928 AAAATTTTTGCATGCATCGGTC 57.333 36.364 23.37 0.00 0.00 4.79
2840 3775 4.917385 TGCTAAATCTCAGGTGCCTAAAA 58.083 39.130 0.00 0.00 0.00 1.52
2898 3836 3.494398 GGCGATTGTCTCCTATAAAGCCA 60.494 47.826 0.00 0.00 36.63 4.75
2913 3851 2.330231 ACAAACATGAACGGCGATTG 57.670 45.000 16.62 7.74 0.00 2.67
2957 3896 2.288640 CCCTTCTTTCAACTACGGTCGT 60.289 50.000 0.69 0.69 0.00 4.34
2958 3897 2.288640 ACCCTTCTTTCAACTACGGTCG 60.289 50.000 0.00 0.00 0.00 4.79
2975 3914 2.303022 CCACTCATACACAACTGACCCT 59.697 50.000 0.00 0.00 0.00 4.34
2982 3921 3.937814 TGGTGATCCACTCATACACAAC 58.062 45.455 0.00 0.00 39.03 3.32
3284 4224 9.237187 TGAGCAATTGTGAGTAATTACCAATTA 57.763 29.630 21.06 10.45 32.38 1.40
3285 4225 8.121305 TGAGCAATTGTGAGTAATTACCAATT 57.879 30.769 18.14 18.14 34.90 2.32
3286 4226 7.701539 TGAGCAATTGTGAGTAATTACCAAT 57.298 32.000 12.05 11.35 0.00 3.16
3287 4227 7.013750 TGTTGAGCAATTGTGAGTAATTACCAA 59.986 33.333 12.05 9.63 0.00 3.67
3288 4228 6.488344 TGTTGAGCAATTGTGAGTAATTACCA 59.512 34.615 12.05 7.26 0.00 3.25
3289 4229 6.908825 TGTTGAGCAATTGTGAGTAATTACC 58.091 36.000 12.05 4.78 0.00 2.85
3290 4230 8.289618 TCTTGTTGAGCAATTGTGAGTAATTAC 58.710 33.333 7.57 7.57 36.36 1.89
3291 4231 8.389779 TCTTGTTGAGCAATTGTGAGTAATTA 57.610 30.769 7.40 0.00 36.36 1.40
3404 4344 1.533273 ACTGGGCTACACGTGGAGT 60.533 57.895 28.05 6.72 0.00 3.85
3456 4599 8.467963 TGCACAACCTGATCATGAATATTAAT 57.532 30.769 0.00 0.00 0.00 1.40
3458 4601 7.557358 ACTTGCACAACCTGATCATGAATATTA 59.443 33.333 0.00 0.00 0.00 0.98
3465 4608 3.253921 TGAACTTGCACAACCTGATCATG 59.746 43.478 0.00 0.00 0.00 3.07
3491 4635 1.290203 GCGACGGATCATGACAACAT 58.710 50.000 0.00 0.00 37.19 2.71
3510 4654 5.105228 TGAGTATTAGGACCAAAAGGTACGG 60.105 44.000 0.00 0.00 0.00 4.02
3544 4688 1.757118 AGCTCGCTTTGCTATGGACTA 59.243 47.619 0.00 0.00 39.21 2.59
3549 4693 2.286067 GCTACAAGCTCGCTTTGCTATG 60.286 50.000 0.58 0.00 40.22 2.23
3573 4717 8.543774 AGAAAGGATATTGAGAGAGCTTTTACA 58.456 33.333 0.00 0.00 0.00 2.41
3683 4827 5.303589 GCTACCTTGTAGATACCATGTACCA 59.696 44.000 5.48 0.00 0.00 3.25
3710 4854 1.680735 TCAAAGCCATCACCACAACAC 59.319 47.619 0.00 0.00 0.00 3.32
3715 4859 3.451141 TGTTTTCAAAGCCATCACCAC 57.549 42.857 0.00 0.00 0.00 4.16
3797 4941 6.481644 GTCACTCATACTTTGGGATCTCAATC 59.518 42.308 9.29 0.00 0.00 2.67
3807 4951 5.106157 GGGATGTTTGTCACTCATACTTTGG 60.106 44.000 0.00 0.00 0.00 3.28
3808 4952 5.473162 TGGGATGTTTGTCACTCATACTTTG 59.527 40.000 0.00 0.00 0.00 2.77
3809 4953 5.630121 TGGGATGTTTGTCACTCATACTTT 58.370 37.500 0.00 0.00 0.00 2.66
3810 4954 5.241403 TGGGATGTTTGTCACTCATACTT 57.759 39.130 0.00 0.00 0.00 2.24
3811 4955 4.908601 TGGGATGTTTGTCACTCATACT 57.091 40.909 0.00 0.00 0.00 2.12
3813 4957 5.630121 ACTTTGGGATGTTTGTCACTCATA 58.370 37.500 0.00 0.00 0.00 2.15
3814 4958 4.473444 ACTTTGGGATGTTTGTCACTCAT 58.527 39.130 0.00 0.00 0.00 2.90
3815 4959 3.897239 ACTTTGGGATGTTTGTCACTCA 58.103 40.909 0.00 0.00 0.00 3.41
3816 4960 5.705441 TCATACTTTGGGATGTTTGTCACTC 59.295 40.000 0.00 0.00 0.00 3.51
3819 4963 5.473162 CACTCATACTTTGGGATGTTTGTCA 59.527 40.000 0.00 0.00 0.00 3.58
3821 4965 4.218417 GCACTCATACTTTGGGATGTTTGT 59.782 41.667 0.00 0.00 0.00 2.83
3825 4969 2.308570 TGGCACTCATACTTTGGGATGT 59.691 45.455 0.00 0.00 0.00 3.06
3850 4994 5.587861 ACAGCTCCATGAGAGGATATATGA 58.412 41.667 11.63 0.00 43.46 2.15
3854 4998 6.753913 TTAAACAGCTCCATGAGAGGATAT 57.246 37.500 11.63 0.00 43.46 1.63
3867 5012 9.798994 ATTCAATCATCATTCTTTAAACAGCTC 57.201 29.630 0.00 0.00 0.00 4.09
3870 5015 9.361315 TGCATTCAATCATCATTCTTTAAACAG 57.639 29.630 0.00 0.00 0.00 3.16
3943 5088 2.943265 AGGCTGGCCAGGGATGTT 60.943 61.111 33.46 0.00 38.92 2.71
3945 5090 2.687610 AAGAGGCTGGCCAGGGATG 61.688 63.158 33.46 9.95 38.92 3.51
3957 5102 5.165961 TGGGTATATATGAAGCAAGAGGC 57.834 43.478 0.00 0.00 45.30 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.