Multiple sequence alignment - TraesCS1A01G288600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G288600 chr1A 100.000 9763 0 0 1 9763 485567136 485557374 0.000000e+00 18029
1 TraesCS1A01G288600 chr1A 93.243 148 8 2 2966 3112 588377220 588377366 5.940000e-52 217
2 TraesCS1A01G288600 chr1D 97.053 6209 130 20 3106 9278 386125630 386119439 0.000000e+00 10403
3 TraesCS1A01G288600 chr1D 95.415 2530 78 17 480 2984 386128143 386125627 0.000000e+00 3995
4 TraesCS1A01G288600 chr1D 88.498 426 16 12 9358 9761 386119059 386118645 1.470000e-132 484
5 TraesCS1A01G288600 chr1D 94.444 144 6 2 2976 3118 469018688 469018546 4.590000e-53 220
6 TraesCS1A01G288600 chr1D 93.243 148 9 1 3106 3252 100461990 100461843 5.940000e-52 217
7 TraesCS1A01G288600 chr1B 97.024 4099 99 8 3106 7186 518263910 518259817 0.000000e+00 6872
8 TraesCS1A01G288600 chr1B 95.011 1844 51 11 882 2709 518266723 518264905 0.000000e+00 2857
9 TraesCS1A01G288600 chr1B 93.260 638 35 7 8273 8905 518259001 518258367 0.000000e+00 933
10 TraesCS1A01G288600 chr1B 95.122 410 16 3 7868 8276 518259486 518259080 2.300000e-180 643
11 TraesCS1A01G288600 chr1B 87.961 407 26 11 8884 9278 518258117 518257722 8.940000e-125 459
12 TraesCS1A01G288600 chr1B 89.106 358 34 5 1 355 518271078 518270723 3.240000e-119 440
13 TraesCS1A01G288600 chr1B 91.722 302 8 2 533 827 518267552 518267261 4.250000e-108 403
14 TraesCS1A01G288600 chr1B 91.905 210 13 2 7614 7823 518259689 518259484 3.450000e-74 291
15 TraesCS1A01G288600 chr1B 98.000 150 3 0 2835 2984 518264056 518263907 2.700000e-65 261
16 TraesCS1A01G288600 chr1B 89.320 206 9 2 9566 9762 518242578 518242377 7.570000e-61 246
17 TraesCS1A01G288600 chr1B 86.631 187 12 7 366 540 518268780 518268595 2.780000e-45 195
18 TraesCS1A01G288600 chr1B 92.373 118 8 1 2868 2984 415552094 415551977 6.070000e-37 167
19 TraesCS1A01G288600 chr7A 90.273 843 56 9 1249 2091 134549240 134550056 0.000000e+00 1079
20 TraesCS1A01G288600 chr7A 92.208 154 9 3 2967 3118 625074771 625074619 2.140000e-51 215
21 TraesCS1A01G288600 chr6A 81.757 1343 163 51 6529 7823 175653251 175651943 0.000000e+00 1048
22 TraesCS1A01G288600 chr6A 90.204 245 23 1 1264 1508 77889672 77889915 1.580000e-82 318
23 TraesCS1A01G288600 chr6A 89.388 245 25 1 1264 1508 78019190 78019433 3.430000e-79 307
24 TraesCS1A01G288600 chr6A 88.398 181 12 6 3079 3252 384087743 384087921 9.940000e-50 209
25 TraesCS1A01G288600 chr3A 88.915 866 69 10 1227 2091 712620810 712621649 0.000000e+00 1042
26 TraesCS1A01G288600 chr3A 92.105 152 11 1 3106 3256 419388580 419388429 7.680000e-51 213
27 TraesCS1A01G288600 chr6D 85.736 666 71 15 6532 7186 134288652 134288000 0.000000e+00 682
28 TraesCS1A01G288600 chr6D 85.435 666 73 15 6532 7186 134693814 134693162 0.000000e+00 671
29 TraesCS1A01G288600 chr6D 81.016 669 91 25 7168 7823 134693153 134692508 5.260000e-137 499
30 TraesCS1A01G288600 chr6D 80.568 669 94 25 7168 7823 134287991 134287346 5.300000e-132 483
31 TraesCS1A01G288600 chr6D 90.204 245 17 4 1264 1508 161148513 161148750 7.360000e-81 313
32 TraesCS1A01G288600 chr6D 86.331 139 16 2 7868 8003 134287348 134287210 2.200000e-31 148
33 TraesCS1A01G288600 chr6D 86.331 139 16 2 7868 8003 134692510 134692372 2.200000e-31 148
34 TraesCS1A01G288600 chr6B 86.344 454 54 5 6697 7150 233032940 233032495 1.140000e-133 488
35 TraesCS1A01G288600 chr6B 86.466 266 25 9 7563 7823 233032129 233031870 2.080000e-71 281
36 TraesCS1A01G288600 chr6B 89.855 207 15 5 6532 6733 233033147 233032942 2.700000e-65 261
37 TraesCS1A01G288600 chr6B 77.975 395 66 16 2869 3252 12849628 12849244 2.740000e-55 228
38 TraesCS1A01G288600 chr6B 85.106 141 16 2 7868 8003 233031872 233031732 1.320000e-28 139
39 TraesCS1A01G288600 chr4A 91.358 243 21 0 1264 1506 94762724 94762966 5.650000e-87 333
40 TraesCS1A01G288600 chr4A 93.960 149 7 2 3106 3252 211380333 211380481 3.550000e-54 224
41 TraesCS1A01G288600 chr4A 93.836 146 7 2 2971 3115 637202591 637202735 1.650000e-52 219
42 TraesCS1A01G288600 chr4A 93.162 117 7 1 2869 2984 467683853 467683969 4.690000e-38 171
43 TraesCS1A01G288600 chr5D 88.288 222 23 3 1271 1492 435121194 435121412 7.520000e-66 263
44 TraesCS1A01G288600 chr2D 94.595 148 7 1 3106 3252 627516591 627516444 2.740000e-55 228
45 TraesCS1A01G288600 chr2D 97.037 135 3 1 2981 3115 389889379 389889246 9.870000e-55 226
46 TraesCS1A01G288600 chr3D 94.406 143 6 2 2967 3107 351086609 351086751 1.650000e-52 219
47 TraesCS1A01G288600 chr3D 93.103 116 7 1 2869 2983 379001613 379001498 1.690000e-37 169
48 TraesCS1A01G288600 chr2B 92.208 154 9 3 2967 3118 160674680 160674832 2.140000e-51 215
49 TraesCS1A01G288600 chr2B 85.128 195 26 3 2918 3111 799588689 799588497 7.740000e-46 196
50 TraesCS1A01G288600 chr4B 91.195 159 9 3 3093 3250 132324790 132324944 2.760000e-50 211
51 TraesCS1A01G288600 chr5B 90.184 163 12 4 3106 3265 591105287 591105126 9.940000e-50 209
52 TraesCS1A01G288600 chr5B 88.506 174 14 4 2943 3116 254980601 254980434 1.290000e-48 206
53 TraesCS1A01G288600 chr5B 93.220 118 7 1 2868 2984 219821873 219821756 1.300000e-38 172
54 TraesCS1A01G288600 chr7D 91.667 120 9 1 2866 2984 42220756 42220875 2.180000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G288600 chr1A 485557374 485567136 9762 True 18029.000000 18029 100.000000 1 9763 1 chr1A.!!$R1 9762
1 TraesCS1A01G288600 chr1D 386118645 386128143 9498 True 4960.666667 10403 93.655333 480 9761 3 chr1D.!!$R3 9281
2 TraesCS1A01G288600 chr1B 518257722 518271078 13356 True 1335.400000 6872 92.574200 1 9278 10 chr1B.!!$R3 9277
3 TraesCS1A01G288600 chr7A 134549240 134550056 816 False 1079.000000 1079 90.273000 1249 2091 1 chr7A.!!$F1 842
4 TraesCS1A01G288600 chr6A 175651943 175653251 1308 True 1048.000000 1048 81.757000 6529 7823 1 chr6A.!!$R1 1294
5 TraesCS1A01G288600 chr3A 712620810 712621649 839 False 1042.000000 1042 88.915000 1227 2091 1 chr3A.!!$F1 864
6 TraesCS1A01G288600 chr6D 134692372 134693814 1442 True 439.333333 671 84.260667 6532 8003 3 chr6D.!!$R2 1471
7 TraesCS1A01G288600 chr6D 134287210 134288652 1442 True 437.666667 682 84.211667 6532 8003 3 chr6D.!!$R1 1471
8 TraesCS1A01G288600 chr6B 233031732 233033147 1415 True 292.250000 488 86.942750 6532 8003 4 chr6B.!!$R2 1471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 3617 0.750249 AAGTCCAAAAGCAAACCCCG 59.250 50.000 0.00 0.0 0.00 5.73 F
923 4408 0.989164 TGATCGATCGTGTTCGTTGC 59.011 50.000 20.03 0.0 40.03 4.17 F
1649 5153 1.228429 CCTGAAAACCCGGCCAGAA 60.228 57.895 2.24 0.0 0.00 3.02 F
1784 5288 1.734137 CTTGCAGGCAGGCATGATC 59.266 57.895 10.42 0.0 44.48 2.92 F
2100 5604 2.086869 TGCTCTGCTAATGTTTCAGGC 58.913 47.619 0.00 0.0 0.00 4.85 F
2259 5763 2.093447 CAGCGGACTCACTTCCCTTAAT 60.093 50.000 0.00 0.0 31.03 1.40 F
2997 7331 2.905415 TGTACTCCCTCCGTCCTAAA 57.095 50.000 0.00 0.0 0.00 1.85 F
3104 7438 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.0 0.00 4.30 F
4356 8706 1.996191 GACTCTGCCGACAAGTCATTC 59.004 52.381 8.41 0.0 39.36 2.67 F
5319 9670 1.280457 AGAAAGGGTCGCCATCTTCT 58.720 50.000 0.00 1.8 0.00 2.85 F
6380 10731 0.038744 CATGTGGAGGGGTGAGCTTT 59.961 55.000 0.00 0.0 0.00 3.51 F
8437 13080 1.585668 CTGCTATCGAAACTGAGCACG 59.414 52.381 0.00 0.0 39.93 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 5237 1.340657 GCCGCAGCGATATCTTCTCG 61.341 60.000 18.75 0.00 39.11 4.04 R
2772 6277 1.133513 TCTTTTGGCTGCTTCTCCCAA 60.134 47.619 0.00 0.00 36.88 4.12 R
3089 7423 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
3090 7424 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12 R
3091 7425 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37 R
3093 7427 1.144503 TCCATAGTACTCCCTCCGTCC 59.855 57.143 0.00 0.00 0.00 4.79 R
4863 9213 0.958091 TGGGCCACAGAAATTGTTCG 59.042 50.000 0.00 0.00 38.16 3.95 R
5282 9633 4.471904 TTCTTCGAGCATGGTTCTACAT 57.528 40.909 0.00 0.00 0.00 2.29 R
6380 10731 0.106769 TTGGTGCCAGCTTCACAAGA 60.107 50.000 15.40 1.28 36.22 3.02 R
6733 11126 2.332063 ACTCCATAAGGGTCATTGCG 57.668 50.000 0.00 0.00 38.11 4.85 R
8548 13193 0.608130 ACTACTGACTTGGATGCGCA 59.392 50.000 14.96 14.96 0.00 6.09 R
9284 14244 0.034059 AAGAGACACCTCAAGCACGG 59.966 55.000 0.00 0.00 41.87 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.351054 CGCCAAACCTCCCCTGCT 62.351 66.667 0.00 0.00 0.00 4.24
66 67 2.361737 GCCAAACCTCCCCTGCTC 60.362 66.667 0.00 0.00 0.00 4.26
67 68 2.911926 GCCAAACCTCCCCTGCTCT 61.912 63.158 0.00 0.00 0.00 4.09
68 69 1.001641 CCAAACCTCCCCTGCTCTG 60.002 63.158 0.00 0.00 0.00 3.35
69 70 1.676967 CAAACCTCCCCTGCTCTGC 60.677 63.158 0.00 0.00 0.00 4.26
98 100 2.311463 GCCTGAGCTCATACTCCTACA 58.689 52.381 18.63 0.00 35.72 2.74
99 101 2.035321 GCCTGAGCTCATACTCCTACAC 59.965 54.545 18.63 0.00 35.72 2.90
101 103 3.894427 CCTGAGCTCATACTCCTACACAT 59.106 47.826 18.63 0.00 35.72 3.21
102 104 4.261952 CCTGAGCTCATACTCCTACACATG 60.262 50.000 18.63 0.00 35.72 3.21
108 110 5.468072 GCTCATACTCCTACACATGAATTGG 59.532 44.000 0.00 0.00 0.00 3.16
117 119 6.718912 TCCTACACATGAATTGGTTGAAATCA 59.281 34.615 0.00 0.00 0.00 2.57
136 138 1.076014 GTGGGAATCGGGGTTGGTT 59.924 57.895 0.00 0.00 0.00 3.67
139 141 2.348104 GGAATCGGGGTTGGTTGCC 61.348 63.158 0.00 0.00 0.00 4.52
158 160 2.688515 GCCGGAAATTGGAGGGGATTTA 60.689 50.000 5.05 0.00 0.00 1.40
180 182 1.363744 CAGAATCGGAGCACCTTGTC 58.636 55.000 0.00 0.00 0.00 3.18
191 193 2.354821 AGCACCTTGTCGAAGTTTTGTC 59.645 45.455 0.00 0.00 0.00 3.18
197 199 2.466846 TGTCGAAGTTTTGTCGGACTC 58.533 47.619 9.88 0.00 39.01 3.36
236 238 2.493675 GTTGGGCTGAAATTTCTCTCCC 59.506 50.000 23.98 23.98 34.00 4.30
237 239 1.710244 TGGGCTGAAATTTCTCTCCCA 59.290 47.619 26.98 26.98 37.89 4.37
245 247 0.831307 ATTTCTCTCCCACCTACCGC 59.169 55.000 0.00 0.00 0.00 5.68
252 254 4.467084 CCACCTACCGCCGCATGT 62.467 66.667 0.00 0.00 0.00 3.21
270 272 5.180492 CGCATGTCTTTTTAGTTCACCCTAA 59.820 40.000 0.00 0.00 0.00 2.69
273 275 7.595130 GCATGTCTTTTTAGTTCACCCTAAAAG 59.405 37.037 0.00 0.00 43.81 2.27
318 320 3.072211 GGGTACAAGTTCTTCTTTCGGG 58.928 50.000 0.00 0.00 33.63 5.14
327 329 6.223351 AGTTCTTCTTTCGGGGAGTTATAG 57.777 41.667 0.00 0.00 0.00 1.31
350 353 2.041251 TTTTTCCCTAATACCGGCCG 57.959 50.000 21.04 21.04 0.00 6.13
354 357 0.911053 TCCCTAATACCGGCCGTTTT 59.089 50.000 26.12 16.30 0.00 2.43
355 358 2.114616 TCCCTAATACCGGCCGTTTTA 58.885 47.619 26.12 16.55 0.00 1.52
356 359 2.705127 TCCCTAATACCGGCCGTTTTAT 59.295 45.455 26.12 14.43 0.00 1.40
357 360 2.809696 CCCTAATACCGGCCGTTTTATG 59.190 50.000 26.12 10.10 0.00 1.90
358 361 2.809696 CCTAATACCGGCCGTTTTATGG 59.190 50.000 26.12 15.13 0.00 2.74
359 362 2.423446 AATACCGGCCGTTTTATGGT 57.577 45.000 26.12 15.21 36.72 3.55
361 364 3.775261 ATACCGGCCGTTTTATGGTAT 57.225 42.857 26.12 18.50 40.24 2.73
362 365 1.670791 ACCGGCCGTTTTATGGTATG 58.329 50.000 26.12 6.21 0.00 2.39
363 366 1.065272 ACCGGCCGTTTTATGGTATGT 60.065 47.619 26.12 6.94 0.00 2.29
367 2302 3.127203 CGGCCGTTTTATGGTATGTGAAA 59.873 43.478 19.50 0.00 0.00 2.69
378 2313 8.958175 TTATGGTATGTGAAATTGTTTTCGTC 57.042 30.769 0.00 0.00 43.49 4.20
394 2329 7.081212 GTTTTCGTCCAAAACCGTAAAATAC 57.919 36.000 0.67 0.00 45.76 1.89
449 2386 7.609760 TTAGATTGCTTACCACAATACAGTG 57.390 36.000 0.00 0.00 37.85 3.66
450 2387 4.396166 AGATTGCTTACCACAATACAGTGC 59.604 41.667 0.00 0.00 37.85 4.40
451 2388 2.432444 TGCTTACCACAATACAGTGCC 58.568 47.619 0.00 0.00 38.18 5.01
452 2389 2.039746 TGCTTACCACAATACAGTGCCT 59.960 45.455 0.00 0.00 38.18 4.75
453 2390 3.081804 GCTTACCACAATACAGTGCCTT 58.918 45.455 0.00 0.00 38.18 4.35
454 2391 3.506067 GCTTACCACAATACAGTGCCTTT 59.494 43.478 0.00 0.00 38.18 3.11
456 2393 5.182380 GCTTACCACAATACAGTGCCTTTTA 59.818 40.000 0.00 0.00 38.18 1.52
457 2394 6.563222 TTACCACAATACAGTGCCTTTTAC 57.437 37.500 0.00 0.00 38.18 2.01
458 2395 4.725490 ACCACAATACAGTGCCTTTTACT 58.275 39.130 0.00 0.00 38.18 2.24
459 2396 5.871834 ACCACAATACAGTGCCTTTTACTA 58.128 37.500 0.00 0.00 38.18 1.82
460 2397 5.938125 ACCACAATACAGTGCCTTTTACTAG 59.062 40.000 0.00 0.00 38.18 2.57
622 3617 0.750249 AAGTCCAAAAGCAAACCCCG 59.250 50.000 0.00 0.00 0.00 5.73
904 4389 4.516326 CCCCCGATTCCCCTCCCT 62.516 72.222 0.00 0.00 0.00 4.20
923 4408 0.989164 TGATCGATCGTGTTCGTTGC 59.011 50.000 20.03 0.00 40.03 4.17
1509 5013 2.588877 GTGCGCGCCATCACCTAT 60.589 61.111 30.77 0.00 0.00 2.57
1649 5153 1.228429 CCTGAAAACCCGGCCAGAA 60.228 57.895 2.24 0.00 0.00 3.02
1682 5186 2.474526 CCTGAACGAAGCGCTTTATGTG 60.475 50.000 25.84 13.97 0.00 3.21
1683 5187 2.409012 TGAACGAAGCGCTTTATGTGA 58.591 42.857 25.84 10.76 0.00 3.58
1684 5188 3.000041 TGAACGAAGCGCTTTATGTGAT 59.000 40.909 25.84 9.30 0.00 3.06
1733 5237 2.253452 CAGTGCTTGCAGGCGTTC 59.747 61.111 16.68 9.11 34.52 3.95
1784 5288 1.734137 CTTGCAGGCAGGCATGATC 59.266 57.895 10.42 0.00 44.48 2.92
1787 5291 2.487532 GCAGGCAGGCATGATCACC 61.488 63.158 10.42 0.00 0.00 4.02
2100 5604 2.086869 TGCTCTGCTAATGTTTCAGGC 58.913 47.619 0.00 0.00 0.00 4.85
2259 5763 2.093447 CAGCGGACTCACTTCCCTTAAT 60.093 50.000 0.00 0.00 31.03 1.40
2531 6036 4.220602 CCAGGTTGGTTGCTTAATAGCTTT 59.779 41.667 0.00 0.00 39.42 3.51
2611 6116 3.068307 GTCCATAACCTACACGAGCAGAT 59.932 47.826 0.00 0.00 0.00 2.90
2695 6200 7.299246 ACTAGAAAAGAACTAGTAGGCACAA 57.701 36.000 0.00 0.00 45.52 3.33
2715 6220 5.182001 CACAATTCTTTTGTCCGATTCTCCT 59.818 40.000 0.00 0.00 0.00 3.69
2747 6252 6.098409 GTGAGAATTGGACCTCTAGGATTGTA 59.902 42.308 2.23 0.00 38.94 2.41
2991 7325 8.840200 ATATCAAATATATGTACTCCCTCCGT 57.160 34.615 0.00 0.00 0.00 4.69
2992 7326 6.585695 TCAAATATATGTACTCCCTCCGTC 57.414 41.667 0.00 0.00 0.00 4.79
2993 7327 5.479375 TCAAATATATGTACTCCCTCCGTCC 59.521 44.000 0.00 0.00 0.00 4.79
2994 7328 4.949966 ATATATGTACTCCCTCCGTCCT 57.050 45.455 0.00 0.00 0.00 3.85
2995 7329 6.398655 AATATATGTACTCCCTCCGTCCTA 57.601 41.667 0.00 0.00 0.00 2.94
2996 7330 4.736611 ATATGTACTCCCTCCGTCCTAA 57.263 45.455 0.00 0.00 0.00 2.69
2997 7331 2.905415 TGTACTCCCTCCGTCCTAAA 57.095 50.000 0.00 0.00 0.00 1.85
2998 7332 3.173953 TGTACTCCCTCCGTCCTAAAA 57.826 47.619 0.00 0.00 0.00 1.52
2999 7333 3.716431 TGTACTCCCTCCGTCCTAAAAT 58.284 45.455 0.00 0.00 0.00 1.82
3000 7334 4.098894 TGTACTCCCTCCGTCCTAAAATT 58.901 43.478 0.00 0.00 0.00 1.82
3001 7335 3.908643 ACTCCCTCCGTCCTAAAATTC 57.091 47.619 0.00 0.00 0.00 2.17
3002 7336 3.451890 ACTCCCTCCGTCCTAAAATTCT 58.548 45.455 0.00 0.00 0.00 2.40
3003 7337 3.844804 ACTCCCTCCGTCCTAAAATTCTT 59.155 43.478 0.00 0.00 0.00 2.52
3004 7338 4.192317 CTCCCTCCGTCCTAAAATTCTTG 58.808 47.826 0.00 0.00 0.00 3.02
3005 7339 3.585732 TCCCTCCGTCCTAAAATTCTTGT 59.414 43.478 0.00 0.00 0.00 3.16
3006 7340 3.939592 CCCTCCGTCCTAAAATTCTTGTC 59.060 47.826 0.00 0.00 0.00 3.18
3007 7341 4.323562 CCCTCCGTCCTAAAATTCTTGTCT 60.324 45.833 0.00 0.00 0.00 3.41
3008 7342 5.246307 CCTCCGTCCTAAAATTCTTGTCTT 58.754 41.667 0.00 0.00 0.00 3.01
3009 7343 6.403878 CCTCCGTCCTAAAATTCTTGTCTTA 58.596 40.000 0.00 0.00 0.00 2.10
3010 7344 6.535508 CCTCCGTCCTAAAATTCTTGTCTTAG 59.464 42.308 0.00 0.00 0.00 2.18
3011 7345 7.235935 TCCGTCCTAAAATTCTTGTCTTAGA 57.764 36.000 0.00 0.00 0.00 2.10
3012 7346 7.848128 TCCGTCCTAAAATTCTTGTCTTAGAT 58.152 34.615 0.00 0.00 0.00 1.98
3013 7347 8.319146 TCCGTCCTAAAATTCTTGTCTTAGATT 58.681 33.333 0.00 0.00 0.00 2.40
3014 7348 8.947115 CCGTCCTAAAATTCTTGTCTTAGATTT 58.053 33.333 0.00 0.00 0.00 2.17
3015 7349 9.760660 CGTCCTAAAATTCTTGTCTTAGATTTG 57.239 33.333 0.00 0.00 0.00 2.32
3026 7360 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3027 7361 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3028 7362 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3029 7363 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3030 7364 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3031 7365 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3048 7382 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
3049 7383 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
3050 7384 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
3051 7385 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
3061 7395 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3062 7396 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3063 7397 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3064 7398 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3065 7399 4.025015 ACGTGACTTGATACATCCGTAC 57.975 45.455 0.00 0.00 0.00 3.67
3066 7400 3.693085 ACGTGACTTGATACATCCGTACT 59.307 43.478 0.00 0.00 0.00 2.73
3067 7401 4.157289 ACGTGACTTGATACATCCGTACTT 59.843 41.667 0.00 0.00 0.00 2.24
3068 7402 5.355071 ACGTGACTTGATACATCCGTACTTA 59.645 40.000 0.00 0.00 0.00 2.24
3069 7403 5.907945 CGTGACTTGATACATCCGTACTTAG 59.092 44.000 0.00 0.00 0.00 2.18
3070 7404 6.238293 CGTGACTTGATACATCCGTACTTAGA 60.238 42.308 0.00 0.00 0.00 2.10
3071 7405 6.911511 GTGACTTGATACATCCGTACTTAGAC 59.088 42.308 0.00 0.00 0.00 2.59
3072 7406 6.600427 TGACTTGATACATCCGTACTTAGACA 59.400 38.462 0.00 0.00 0.00 3.41
3073 7407 7.121611 TGACTTGATACATCCGTACTTAGACAA 59.878 37.037 0.00 0.00 0.00 3.18
3074 7408 7.833786 ACTTGATACATCCGTACTTAGACAAA 58.166 34.615 0.00 0.00 0.00 2.83
3075 7409 8.475639 ACTTGATACATCCGTACTTAGACAAAT 58.524 33.333 0.00 0.00 0.00 2.32
3076 7410 9.314321 CTTGATACATCCGTACTTAGACAAATT 57.686 33.333 0.00 0.00 0.00 1.82
3077 7411 9.661563 TTGATACATCCGTACTTAGACAAATTT 57.338 29.630 0.00 0.00 0.00 1.82
3082 7416 9.148104 ACATCCGTACTTAGACAAATTTAAGAC 57.852 33.333 5.62 0.58 32.52 3.01
3083 7417 9.146984 CATCCGTACTTAGACAAATTTAAGACA 57.853 33.333 5.62 0.00 32.52 3.41
3084 7418 9.715121 ATCCGTACTTAGACAAATTTAAGACAA 57.285 29.630 5.62 0.00 32.52 3.18
3085 7419 9.199982 TCCGTACTTAGACAAATTTAAGACAAG 57.800 33.333 5.62 2.54 32.52 3.16
3086 7420 9.199982 CCGTACTTAGACAAATTTAAGACAAGA 57.800 33.333 5.62 0.00 32.52 3.02
3094 7428 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
3095 7429 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
3096 7430 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3097 7431 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3098 7432 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3099 7433 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3100 7434 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3101 7435 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3102 7436 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3103 7437 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3104 7438 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3125 7459 7.402071 AGGGAGTACTATGGAACTACATTTCAA 59.598 37.037 0.00 0.00 32.39 2.69
3404 7741 2.867109 AGTTCACACTAGCTGCCAAT 57.133 45.000 0.00 0.00 0.00 3.16
3605 7942 5.814705 CCTATCTTGATCAAGGTCTGTTCAC 59.185 44.000 30.33 0.00 38.88 3.18
3878 8228 8.689251 TCGTTAATTGTCTGAGTCTAAATGAG 57.311 34.615 0.00 0.00 0.00 2.90
4344 8694 3.126000 GTGCAGTTCTAAATGACTCTGCC 59.874 47.826 11.45 1.48 44.58 4.85
4356 8706 1.996191 GACTCTGCCGACAAGTCATTC 59.004 52.381 8.41 0.00 39.36 2.67
4863 9213 8.449251 AAATCTCTTCTTCCTTGCATTCTATC 57.551 34.615 0.00 0.00 0.00 2.08
4941 9291 4.134563 CACCACCTAGTAGTGTTGCTTTT 58.865 43.478 0.00 0.00 35.93 2.27
5157 9508 7.937394 GGTTTGGCTATTACTTCATACATACCT 59.063 37.037 0.00 0.00 0.00 3.08
5319 9670 1.280457 AGAAAGGGTCGCCATCTTCT 58.720 50.000 0.00 1.80 0.00 2.85
5402 9753 4.750598 GTCTCTTGTTCTGGTAACCTCAAC 59.249 45.833 0.00 0.00 0.00 3.18
5929 10280 4.884164 CCTTCTGTTTCTTCAGTTCCACTT 59.116 41.667 0.00 0.00 36.85 3.16
6380 10731 0.038744 CATGTGGAGGGGTGAGCTTT 59.961 55.000 0.00 0.00 0.00 3.51
6835 11229 5.423015 AGCACATCTGATTTGTCTTATCGT 58.577 37.500 5.76 0.00 0.00 3.73
6919 11313 5.470047 TTTCTTCAGAGGGTACTTCAGAC 57.530 43.478 0.00 0.00 0.00 3.51
6941 11337 4.570772 ACAATGTAAGTGATATGACCGTGC 59.429 41.667 0.00 0.00 34.17 5.34
7130 11529 4.080919 TCAGGTATGCTATATCATGGTGCC 60.081 45.833 0.00 0.00 0.00 5.01
7157 11636 8.331022 GCTCTCATATGTTTATACTTGTGTGTG 58.669 37.037 1.90 0.00 0.00 3.82
7297 11832 7.757097 AGTTTATATGCGTTCTACACTCTTG 57.243 36.000 0.00 0.00 0.00 3.02
7412 11950 9.184523 CATTCCTCATTTAATAACCCTGTGTAA 57.815 33.333 0.00 0.00 0.00 2.41
7587 12134 4.183865 TGATTTGTAACTCATGAGCCTCG 58.816 43.478 22.83 0.00 0.00 4.63
7675 12222 2.698274 TGGTGTTGTCTCTTACTGCTCA 59.302 45.455 0.00 0.00 0.00 4.26
7823 12374 5.186256 TGGGATGTATGTGCCTTTTCTTA 57.814 39.130 0.00 0.00 0.00 2.10
8423 13066 6.096282 GTCTGAACTCTCTACCTTTCTGCTAT 59.904 42.308 0.00 0.00 0.00 2.97
8425 13068 5.066634 TGAACTCTCTACCTTTCTGCTATCG 59.933 44.000 0.00 0.00 0.00 2.92
8434 13077 3.308323 CCTTTCTGCTATCGAAACTGAGC 59.692 47.826 0.00 0.00 35.43 4.26
8437 13080 1.585668 CTGCTATCGAAACTGAGCACG 59.414 52.381 0.00 0.00 39.93 5.34
8548 13193 7.173390 GCTAAAAGAAACTGTGGACTATGAAGT 59.827 37.037 0.00 0.00 39.21 3.01
8612 13257 3.720949 TCTGGCATGATTATTTGCAGC 57.279 42.857 0.00 0.00 40.66 5.25
8616 13263 3.196039 TGGCATGATTATTTGCAGCAGTT 59.804 39.130 0.00 0.00 40.66 3.16
8627 13274 2.221169 TGCAGCAGTTAGTTCCAGTTG 58.779 47.619 0.00 0.00 0.00 3.16
8659 13306 4.773013 TGAGTTTCCTGAAAGTTACCGTT 58.227 39.130 1.75 0.00 34.36 4.44
8667 13314 3.215151 TGAAAGTTACCGTTCATTGGCA 58.785 40.909 0.00 0.00 34.72 4.92
8686 13333 4.279671 TGGCATACTAACACCAAACCTTTG 59.720 41.667 0.00 0.00 37.90 2.77
8687 13334 4.234574 GCATACTAACACCAAACCTTTGC 58.765 43.478 0.00 0.00 36.86 3.68
8860 13508 5.587388 TGTAGGGAAACAAGATACGTAGG 57.413 43.478 0.08 0.00 0.00 3.18
8947 13868 3.637273 GGTTCCCCGTCAGCCAGT 61.637 66.667 0.00 0.00 0.00 4.00
8977 13898 5.537300 ATCCTTGCCTGTACATACTAGTG 57.463 43.478 5.39 0.00 0.00 2.74
8978 13899 3.704566 TCCTTGCCTGTACATACTAGTGG 59.295 47.826 5.39 0.00 0.00 4.00
9034 13960 1.337071 GGCGACCATCGACTTAGATCA 59.663 52.381 1.69 0.00 46.20 2.92
9051 13977 5.301835 AGATCACTGCTATTTATGTGGCT 57.698 39.130 0.00 0.00 0.00 4.75
9052 13978 5.061853 AGATCACTGCTATTTATGTGGCTG 58.938 41.667 0.00 0.00 0.00 4.85
9053 13979 4.486125 TCACTGCTATTTATGTGGCTGA 57.514 40.909 0.00 0.00 0.00 4.26
9132 14067 4.347453 CAGCCGGTGTTTGCCTGC 62.347 66.667 1.90 0.00 38.75 4.85
9172 14107 5.424121 AGCATTTGCCGAAATATGTCTAC 57.576 39.130 0.00 0.00 43.38 2.59
9202 14137 1.407299 GCAGCATGTGGGTATGTCTGA 60.407 52.381 0.00 0.00 39.31 3.27
9207 14142 2.319025 TGTGGGTATGTCTGACCTCA 57.681 50.000 5.17 0.00 37.13 3.86
9208 14143 2.179427 TGTGGGTATGTCTGACCTCAG 58.821 52.381 5.17 0.00 45.08 3.35
9221 14156 5.769967 CTGACCTCAGACGAAACTATTTG 57.230 43.478 0.00 0.00 46.59 2.32
9222 14157 3.994392 TGACCTCAGACGAAACTATTTGC 59.006 43.478 0.00 0.00 0.00 3.68
9223 14158 3.335579 ACCTCAGACGAAACTATTTGCC 58.664 45.455 0.00 0.00 0.00 4.52
9224 14159 2.678336 CCTCAGACGAAACTATTTGCCC 59.322 50.000 0.00 0.00 0.00 5.36
9244 14179 2.268076 CCCACGTTGGCTCCTTTGG 61.268 63.158 0.00 0.00 35.79 3.28
9259 14195 0.179012 TTTGGAGGGGAACGTGGAAC 60.179 55.000 0.00 0.00 0.00 3.62
9278 14214 5.065474 TGGAACGACTTTAGGTTTTGTTGAG 59.935 40.000 0.00 0.00 0.00 3.02
9279 14215 5.295045 GGAACGACTTTAGGTTTTGTTGAGA 59.705 40.000 0.00 0.00 0.00 3.27
9284 14244 6.565999 CGACTTTAGGTTTTGTTGAGATGGAC 60.566 42.308 0.00 0.00 0.00 4.02
9286 14246 2.504367 AGGTTTTGTTGAGATGGACCG 58.496 47.619 0.00 0.00 0.00 4.79
9293 14253 0.684535 TTGAGATGGACCGTGCTTGA 59.315 50.000 0.00 0.00 0.00 3.02
9301 14261 0.667792 GACCGTGCTTGAGGTGTCTC 60.668 60.000 0.00 0.00 41.51 3.36
9315 14275 2.608261 GGTGTCTCTTTCACTCAGGACG 60.608 54.545 0.00 0.00 36.25 4.79
9322 14282 1.481871 TTCACTCAGGACGGGGTATC 58.518 55.000 0.00 0.00 0.00 2.24
9323 14283 0.629596 TCACTCAGGACGGGGTATCT 59.370 55.000 0.00 0.00 0.00 1.98
9326 14286 2.820787 CACTCAGGACGGGGTATCTATC 59.179 54.545 0.00 0.00 0.00 2.08
9331 14299 5.999044 TCAGGACGGGGTATCTATCTATAC 58.001 45.833 0.00 0.00 0.00 1.47
9344 14312 9.675464 GTATCTATCTATACCAGTAGCTTCAGT 57.325 37.037 0.00 0.00 0.00 3.41
9349 14317 7.569639 TCTATACCAGTAGCTTCAGTAGTTG 57.430 40.000 0.00 0.00 0.00 3.16
9350 14318 3.963428 ACCAGTAGCTTCAGTAGTTGG 57.037 47.619 0.00 0.00 0.00 3.77
9352 14320 2.093447 CCAGTAGCTTCAGTAGTTGGGG 60.093 54.545 0.00 0.00 0.00 4.96
9353 14321 2.093447 CAGTAGCTTCAGTAGTTGGGGG 60.093 54.545 0.00 0.00 0.00 5.40
9354 14322 1.907255 GTAGCTTCAGTAGTTGGGGGT 59.093 52.381 0.00 0.00 0.00 4.95
9356 14324 0.322546 GCTTCAGTAGTTGGGGGTGG 60.323 60.000 0.00 0.00 0.00 4.61
9383 14619 1.177401 GTGGAAATGGAACTCTGGGC 58.823 55.000 0.00 0.00 0.00 5.36
9387 14623 2.087646 GAAATGGAACTCTGGGCACTC 58.912 52.381 0.00 0.00 0.00 3.51
9392 14628 2.158475 TGGAACTCTGGGCACTCAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
9393 14629 3.073798 TGGAACTCTGGGCACTCAAAATA 59.926 43.478 0.00 0.00 0.00 1.40
9394 14630 3.691609 GGAACTCTGGGCACTCAAAATAG 59.308 47.826 0.00 0.00 0.00 1.73
9395 14631 4.565652 GGAACTCTGGGCACTCAAAATAGA 60.566 45.833 0.00 0.00 0.00 1.98
9396 14632 4.213564 ACTCTGGGCACTCAAAATAGAG 57.786 45.455 0.00 0.00 41.44 2.43
9397 14633 3.840666 ACTCTGGGCACTCAAAATAGAGA 59.159 43.478 4.38 0.00 38.98 3.10
9398 14634 4.287067 ACTCTGGGCACTCAAAATAGAGAA 59.713 41.667 4.38 0.00 38.98 2.87
9399 14635 5.221925 ACTCTGGGCACTCAAAATAGAGAAA 60.222 40.000 4.38 0.00 38.98 2.52
9404 14640 5.163509 GGGCACTCAAAATAGAGAAATTCCC 60.164 44.000 0.00 0.00 38.98 3.97
9433 14669 6.294286 GGAATTCCATCGTTTGGTGTTCTTAA 60.294 38.462 20.04 4.03 46.52 1.85
9503 14742 1.855513 TGTACACCGGTCTTGTTTCG 58.144 50.000 2.59 0.00 0.00 3.46
9541 14780 4.379186 CGTCCTACGATTACACACTTGTCT 60.379 45.833 0.00 0.00 46.05 3.41
9543 14782 4.157289 TCCTACGATTACACACTTGTCTCC 59.843 45.833 0.00 0.00 37.15 3.71
9563 14802 5.776744 CTCCTTTTGTTGGAGGAAAAGATG 58.223 41.667 0.00 0.00 45.39 2.90
9565 14804 5.301805 TCCTTTTGTTGGAGGAAAAGATGTC 59.698 40.000 0.00 0.00 40.25 3.06
9598 14856 1.148273 TGCGAAAGGTGGTTGAGCT 59.852 52.632 0.00 0.00 0.00 4.09
9623 14881 1.813859 CCGAGGTCGCTGGAATACA 59.186 57.895 0.00 0.00 38.18 2.29
9662 14920 1.141657 AGATGCGGCCAAGTCATGTAT 59.858 47.619 2.24 0.00 0.00 2.29
9663 14921 1.265095 GATGCGGCCAAGTCATGTATG 59.735 52.381 2.24 0.00 0.00 2.39
9664 14922 0.035534 TGCGGCCAAGTCATGTATGT 60.036 50.000 2.24 0.00 0.00 2.29
9665 14923 1.208293 TGCGGCCAAGTCATGTATGTA 59.792 47.619 2.24 0.00 0.00 2.29
9669 14927 3.069016 CGGCCAAGTCATGTATGTACCTA 59.931 47.826 2.24 0.00 0.00 3.08
9693 14951 3.080381 TGGTAACAGCGCAAGGCAATG 62.080 52.381 11.47 0.00 46.17 2.82
9703 14961 1.599542 GCAAGGCAATGATACGACTCC 59.400 52.381 0.00 0.00 0.00 3.85
9761 15019 6.534634 ACTCCTGTTACTTTGCAGATAAGTT 58.465 36.000 7.54 0.00 37.12 2.66
9762 15020 7.676947 ACTCCTGTTACTTTGCAGATAAGTTA 58.323 34.615 7.54 0.00 37.12 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.759795 GCAGAGCAGGGGAGGTTT 59.240 61.111 0.00 0.00 0.00 3.27
53 54 3.334054 GGCAGAGCAGGGGAGGTT 61.334 66.667 0.00 0.00 0.00 3.50
72 73 3.094062 TATGAGCTCAGGCGGGCAC 62.094 63.158 22.96 0.00 44.37 5.01
88 90 6.957631 TCAACCAATTCATGTGTAGGAGTAT 58.042 36.000 0.00 0.00 0.00 2.12
98 100 5.279607 CCCACTGATTTCAACCAATTCATGT 60.280 40.000 0.00 0.00 0.00 3.21
99 101 5.047164 TCCCACTGATTTCAACCAATTCATG 60.047 40.000 0.00 0.00 0.00 3.07
101 103 4.478203 TCCCACTGATTTCAACCAATTCA 58.522 39.130 0.00 0.00 0.00 2.57
102 104 5.467035 TTCCCACTGATTTCAACCAATTC 57.533 39.130 0.00 0.00 0.00 2.17
108 110 2.423538 CCCGATTCCCACTGATTTCAAC 59.576 50.000 0.00 0.00 0.00 3.18
117 119 1.432023 AACCAACCCCGATTCCCACT 61.432 55.000 0.00 0.00 0.00 4.00
136 138 1.580066 ATCCCCTCCAATTTCCGGCA 61.580 55.000 0.00 0.00 0.00 5.69
139 141 3.222603 CCTAAATCCCCTCCAATTTCCG 58.777 50.000 0.00 0.00 0.00 4.30
158 160 1.557269 AAGGTGCTCCGATTCTGCCT 61.557 55.000 0.00 0.00 39.05 4.75
213 215 2.162408 GAGAGAAATTTCAGCCCAACCG 59.838 50.000 19.99 0.00 0.00 4.44
217 219 1.710244 TGGGAGAGAAATTTCAGCCCA 59.290 47.619 27.91 27.91 39.84 5.36
236 238 2.852495 AAGACATGCGGCGGTAGGTG 62.852 60.000 9.78 0.00 0.00 4.00
237 239 2.180159 AAAGACATGCGGCGGTAGGT 62.180 55.000 9.78 0.00 0.00 3.08
245 247 3.365969 GGGTGAACTAAAAAGACATGCGG 60.366 47.826 0.00 0.00 0.00 5.69
252 254 7.225341 GTCGACTTTTAGGGTGAACTAAAAAGA 59.775 37.037 8.70 8.63 46.42 2.52
270 272 1.416401 TCCAGCTTTGGAGTCGACTTT 59.584 47.619 21.08 0.00 33.38 2.66
273 275 2.961526 TATCCAGCTTTGGAGTCGAC 57.038 50.000 7.70 7.70 41.88 4.20
347 350 6.096695 ACAATTTCACATACCATAAAACGGC 58.903 36.000 0.00 0.00 0.00 5.68
354 357 7.175119 TGGACGAAAACAATTTCACATACCATA 59.825 33.333 0.00 0.00 44.24 2.74
355 358 6.015856 TGGACGAAAACAATTTCACATACCAT 60.016 34.615 0.00 0.00 44.24 3.55
356 359 5.299531 TGGACGAAAACAATTTCACATACCA 59.700 36.000 0.00 0.00 44.24 3.25
357 360 5.764131 TGGACGAAAACAATTTCACATACC 58.236 37.500 0.00 0.00 44.24 2.73
358 361 7.687005 TTTGGACGAAAACAATTTCACATAC 57.313 32.000 0.00 0.00 44.24 2.39
427 2364 4.396166 GCACTGTATTGTGGTAAGCAATCT 59.604 41.667 0.00 0.00 37.65 2.40
433 2370 5.705609 AAAAGGCACTGTATTGTGGTAAG 57.294 39.130 0.00 0.00 40.86 2.34
449 2386 9.418045 CTTTATCTAGCAGATCTAGTAAAAGGC 57.582 37.037 0.00 0.00 44.10 4.35
450 2387 9.921637 CCTTTATCTAGCAGATCTAGTAAAAGG 57.078 37.037 20.04 20.04 46.48 3.11
454 2391 9.469097 GGATCCTTTATCTAGCAGATCTAGTAA 57.531 37.037 3.84 0.00 44.10 2.24
456 2393 6.895204 GGGATCCTTTATCTAGCAGATCTAGT 59.105 42.308 12.58 0.00 44.10 2.57
457 2394 6.039270 CGGGATCCTTTATCTAGCAGATCTAG 59.961 46.154 12.58 0.00 44.90 2.43
458 2395 5.888724 CGGGATCCTTTATCTAGCAGATCTA 59.111 44.000 12.58 0.00 36.20 1.98
459 2396 4.709397 CGGGATCCTTTATCTAGCAGATCT 59.291 45.833 12.58 0.00 36.20 2.75
460 2397 4.464597 ACGGGATCCTTTATCTAGCAGATC 59.535 45.833 12.58 0.00 36.20 2.75
509 2454 1.518774 GATTACGTGGAGGCCGGAA 59.481 57.895 5.05 0.00 31.77 4.30
622 3617 3.336138 TGGTTTGGTTTGGTTTGGTTC 57.664 42.857 0.00 0.00 0.00 3.62
774 3776 5.298527 AATCCGGGAGATTTTTAACCGATTC 59.701 40.000 0.00 0.00 42.86 2.52
902 4387 1.583856 CAACGAACACGATCGATCAGG 59.416 52.381 24.34 17.17 45.48 3.86
904 4389 0.989164 GCAACGAACACGATCGATCA 59.011 50.000 24.34 0.00 45.48 2.92
923 4408 3.827898 GTCCTCGCTCCGTCCCAG 61.828 72.222 0.00 0.00 0.00 4.45
1509 5013 4.819761 GGCATGGCGTCGCAGAGA 62.820 66.667 20.50 0.00 36.95 3.10
1590 5094 2.420129 GGCCACATCAAGGTACTCGATT 60.420 50.000 0.00 0.00 38.49 3.34
1649 5153 3.401033 TCGTTCAGGTCAATGTGATGT 57.599 42.857 0.00 0.00 0.00 3.06
1682 5186 4.047822 AGAAGAAGCGTGATTGATCGATC 58.952 43.478 18.72 18.72 0.00 3.69
1683 5187 3.801050 CAGAAGAAGCGTGATTGATCGAT 59.199 43.478 0.00 0.00 0.00 3.59
1684 5188 3.182182 CAGAAGAAGCGTGATTGATCGA 58.818 45.455 0.00 0.00 0.00 3.59
1733 5237 1.340657 GCCGCAGCGATATCTTCTCG 61.341 60.000 18.75 0.00 39.11 4.04
1787 5291 2.525248 AATGTATGCGAGCACGGCG 61.525 57.895 4.80 4.80 40.15 6.46
2531 6036 9.778741 CTATAGAAATATGGACTGGCAGTAAAA 57.221 33.333 22.11 9.52 0.00 1.52
2695 6200 6.546428 TCTAGGAGAATCGGACAAAAGAAT 57.454 37.500 0.00 0.00 34.37 2.40
2715 6220 4.956700 AGAGGTCCAATTCTCACGATTCTA 59.043 41.667 0.00 0.00 32.76 2.10
2722 6227 5.104735 ACAATCCTAGAGGTCCAATTCTCAC 60.105 44.000 0.00 0.00 36.34 3.51
2724 6229 5.622346 ACAATCCTAGAGGTCCAATTCTC 57.378 43.478 0.00 0.00 36.34 2.87
2755 6260 4.668636 TCCCAAAATCTTGAACCCGTATT 58.331 39.130 0.00 0.00 34.14 1.89
2757 6262 3.328343 TCTCCCAAAATCTTGAACCCGTA 59.672 43.478 0.00 0.00 34.14 4.02
2758 6263 2.107552 TCTCCCAAAATCTTGAACCCGT 59.892 45.455 0.00 0.00 34.14 5.28
2759 6264 2.790433 TCTCCCAAAATCTTGAACCCG 58.210 47.619 0.00 0.00 34.14 5.28
2760 6265 3.056536 GCTTCTCCCAAAATCTTGAACCC 60.057 47.826 0.00 0.00 34.14 4.11
2761 6266 3.573967 TGCTTCTCCCAAAATCTTGAACC 59.426 43.478 0.00 0.00 34.14 3.62
2762 6267 4.802999 CTGCTTCTCCCAAAATCTTGAAC 58.197 43.478 0.00 0.00 34.14 3.18
2772 6277 1.133513 TCTTTTGGCTGCTTCTCCCAA 60.134 47.619 0.00 0.00 36.88 4.12
2774 6279 1.270826 GTTCTTTTGGCTGCTTCTCCC 59.729 52.381 0.00 0.00 0.00 4.30
2979 7313 4.405036 AGAATTTTAGGACGGAGGGAGTAC 59.595 45.833 0.00 0.00 0.00 2.73
2984 7318 3.939592 GACAAGAATTTTAGGACGGAGGG 59.060 47.826 0.00 0.00 0.00 4.30
2986 7320 7.321153 TCTAAGACAAGAATTTTAGGACGGAG 58.679 38.462 0.00 0.00 0.00 4.63
2987 7321 7.235935 TCTAAGACAAGAATTTTAGGACGGA 57.764 36.000 0.00 0.00 0.00 4.69
2988 7322 8.494016 AATCTAAGACAAGAATTTTAGGACGG 57.506 34.615 0.00 0.00 0.00 4.79
2989 7323 9.760660 CAAATCTAAGACAAGAATTTTAGGACG 57.239 33.333 0.00 0.00 0.00 4.79
3000 7334 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3001 7335 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3002 7336 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3003 7337 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3004 7338 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3005 7339 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3022 7356 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
3023 7357 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
3024 7358 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
3025 7359 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
3035 7369 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3036 7370 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3037 7371 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3038 7372 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3039 7373 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3040 7374 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3041 7375 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3042 7376 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3043 7377 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3044 7378 3.693085 AGTACGGATGTATCAAGTCACGT 59.307 43.478 0.00 0.00 37.14 4.49
3045 7379 4.288670 AGTACGGATGTATCAAGTCACG 57.711 45.455 0.00 0.00 32.11 4.35
3046 7380 6.911511 GTCTAAGTACGGATGTATCAAGTCAC 59.088 42.308 0.00 0.00 32.11 3.67
3047 7381 6.600427 TGTCTAAGTACGGATGTATCAAGTCA 59.400 38.462 0.00 0.00 32.11 3.41
3048 7382 7.024340 TGTCTAAGTACGGATGTATCAAGTC 57.976 40.000 0.00 0.00 32.11 3.01
3049 7383 7.400599 TTGTCTAAGTACGGATGTATCAAGT 57.599 36.000 0.00 0.00 32.11 3.16
3050 7384 8.873215 ATTTGTCTAAGTACGGATGTATCAAG 57.127 34.615 0.00 0.00 32.11 3.02
3051 7385 9.661563 AAATTTGTCTAAGTACGGATGTATCAA 57.338 29.630 0.00 0.00 32.11 2.57
3056 7390 9.148104 GTCTTAAATTTGTCTAAGTACGGATGT 57.852 33.333 0.00 0.00 0.00 3.06
3057 7391 9.146984 TGTCTTAAATTTGTCTAAGTACGGATG 57.853 33.333 0.00 0.00 0.00 3.51
3058 7392 9.715121 TTGTCTTAAATTTGTCTAAGTACGGAT 57.285 29.630 0.00 0.00 0.00 4.18
3059 7393 9.199982 CTTGTCTTAAATTTGTCTAAGTACGGA 57.800 33.333 0.00 0.00 0.00 4.69
3060 7394 9.199982 TCTTGTCTTAAATTTGTCTAAGTACGG 57.800 33.333 0.00 0.00 0.00 4.02
3068 7402 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
3069 7403 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
3070 7404 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3071 7405 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3072 7406 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3073 7407 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3074 7408 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3075 7409 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3076 7410 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3077 7411 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3078 7412 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3079 7413 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3080 7414 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3081 7415 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3082 7416 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3083 7417 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3084 7418 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3085 7419 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3086 7420 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3087 7421 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3088 7422 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3089 7423 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3090 7424 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3091 7425 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
3092 7426 1.618487 CATAGTACTCCCTCCGTCCC 58.382 60.000 0.00 0.00 0.00 4.46
3093 7427 1.144503 TCCATAGTACTCCCTCCGTCC 59.855 57.143 0.00 0.00 0.00 4.79
3094 7428 2.622470 GTTCCATAGTACTCCCTCCGTC 59.378 54.545 0.00 0.00 0.00 4.79
3095 7429 2.244252 AGTTCCATAGTACTCCCTCCGT 59.756 50.000 0.00 0.00 0.00 4.69
3096 7430 2.946785 AGTTCCATAGTACTCCCTCCG 58.053 52.381 0.00 0.00 0.00 4.63
3097 7431 4.801164 TGTAGTTCCATAGTACTCCCTCC 58.199 47.826 0.00 0.00 34.35 4.30
3098 7432 6.980416 AATGTAGTTCCATAGTACTCCCTC 57.020 41.667 0.00 0.00 34.35 4.30
3099 7433 6.901300 TGAAATGTAGTTCCATAGTACTCCCT 59.099 38.462 0.00 0.00 34.35 4.20
3100 7434 7.120923 TGAAATGTAGTTCCATAGTACTCCC 57.879 40.000 0.00 0.00 34.35 4.30
3101 7435 9.444600 TTTTGAAATGTAGTTCCATAGTACTCC 57.555 33.333 0.00 0.00 34.35 3.85
3317 7654 8.512956 TGATCGGACAAGTTCTACTATTATAGC 58.487 37.037 0.00 0.00 0.00 2.97
3426 7763 5.297029 GCTTCATTAACCTGGTAGGATCAAC 59.703 44.000 0.00 0.00 37.67 3.18
3605 7942 8.116753 CCTTAATGAGCTGTTAGTTCGTTATTG 58.883 37.037 0.00 5.38 36.99 1.90
3878 8228 9.366216 TGTCACATAATCACAGAAGTAACATAC 57.634 33.333 0.00 0.00 0.00 2.39
4344 8694 3.559655 TGTCTTGGTTGAATGACTTGTCG 59.440 43.478 0.00 0.00 0.00 4.35
4356 8706 6.135290 TCATTTTGAAGACTGTCTTGGTTG 57.865 37.500 26.47 15.52 36.73 3.77
4387 8737 2.932614 CCTCGCTCAAAATGGTAGACAG 59.067 50.000 0.00 0.00 0.00 3.51
4521 8871 8.390354 TCAGCATTGTAATCTTTAAGATTGTCG 58.610 33.333 25.27 12.73 44.14 4.35
4863 9213 0.958091 TGGGCCACAGAAATTGTTCG 59.042 50.000 0.00 0.00 38.16 3.95
5282 9633 4.471904 TTCTTCGAGCATGGTTCTACAT 57.528 40.909 0.00 0.00 0.00 2.29
5319 9670 4.343814 TCAAATCTAGACACACACTCACCA 59.656 41.667 0.00 0.00 0.00 4.17
5402 9753 2.034179 CAGCTGCACATCCATTATGGTG 59.966 50.000 11.39 10.97 40.16 4.17
5929 10280 6.995686 TCAATTTAGCACTAACAAACTCCTGA 59.004 34.615 0.00 0.00 0.00 3.86
6380 10731 0.106769 TTGGTGCCAGCTTCACAAGA 60.107 50.000 15.40 1.28 36.22 3.02
6733 11126 2.332063 ACTCCATAAGGGTCATTGCG 57.668 50.000 0.00 0.00 38.11 4.85
6835 11229 7.595819 AACAAGATCCTCAATTTTACAACCA 57.404 32.000 0.00 0.00 0.00 3.67
6919 11313 4.024893 GGCACGGTCATATCACTTACATTG 60.025 45.833 0.00 0.00 0.00 2.82
7130 11529 7.222805 ACACACAAGTATAAACATATGAGAGCG 59.777 37.037 10.38 0.00 0.00 5.03
7157 11636 7.291567 GTGTAACTGAAAAGCTGTCATTAGTC 58.708 38.462 1.05 0.00 0.00 2.59
7206 11741 2.552315 CCTACACGCACTCCACATTTTT 59.448 45.455 0.00 0.00 0.00 1.94
7234 11769 7.471539 GCCATGATAGCTTCTAGGTAAGTAACA 60.472 40.741 0.00 0.00 31.35 2.41
7587 12134 1.833934 CACCCTATTGGCCCCATGC 60.834 63.158 0.00 0.00 37.83 4.06
7643 12190 2.366916 AGACAACACCAGAGAAGAGTGG 59.633 50.000 0.00 0.00 39.98 4.00
7833 12384 7.055667 TCAACACAGAGTAATCTTGTTCTCT 57.944 36.000 13.88 0.00 37.70 3.10
7848 12399 8.050778 ACAAAAGTAATCTTGTTCAACACAGA 57.949 30.769 0.00 0.00 36.48 3.41
7855 12406 8.062065 ACTTCCAACAAAAGTAATCTTGTTCA 57.938 30.769 0.00 0.00 42.41 3.18
8423 13066 2.292569 ACTAAGACGTGCTCAGTTTCGA 59.707 45.455 0.00 0.00 0.00 3.71
8425 13068 5.044428 TCTACTAAGACGTGCTCAGTTTC 57.956 43.478 0.00 0.00 0.00 2.78
8494 13137 8.579850 AAGTGTTCCATCAAGATATTAAAGCA 57.420 30.769 0.00 0.00 0.00 3.91
8512 13155 7.644157 CCACAGTTTCTTTTAGCTTAAGTGTTC 59.356 37.037 4.02 0.00 31.84 3.18
8548 13193 0.608130 ACTACTGACTTGGATGCGCA 59.392 50.000 14.96 14.96 0.00 6.09
8612 13257 5.408356 ACGTATAGCAACTGGAACTAACTG 58.592 41.667 0.00 0.00 0.00 3.16
8616 13263 6.028146 TCAAACGTATAGCAACTGGAACTA 57.972 37.500 0.00 0.00 0.00 2.24
8627 13274 6.147328 ACTTTCAGGAAACTCAAACGTATAGC 59.853 38.462 0.00 0.00 40.21 2.97
8659 13306 4.461081 GGTTTGGTGTTAGTATGCCAATGA 59.539 41.667 0.00 0.00 40.23 2.57
8667 13314 3.057806 GCGCAAAGGTTTGGTGTTAGTAT 60.058 43.478 0.30 0.00 38.57 2.12
8771 13418 0.807667 GGCAGCCAGTGTCAGTATCG 60.808 60.000 6.55 0.00 0.00 2.92
8805 13452 1.828331 AAACCACGCGCGAGTTTCTC 61.828 55.000 39.36 0.00 0.00 2.87
8939 13859 4.039730 GCAAGGATAGATAAGACTGGCTGA 59.960 45.833 0.00 0.00 0.00 4.26
8942 13862 3.326297 AGGCAAGGATAGATAAGACTGGC 59.674 47.826 0.00 0.00 0.00 4.85
8947 13868 7.950684 AGTATGTACAGGCAAGGATAGATAAGA 59.049 37.037 0.33 0.00 0.00 2.10
8977 13898 3.057033 TCGAGAGCACACCTAAAACTACC 60.057 47.826 0.00 0.00 0.00 3.18
8978 13899 4.167268 CTCGAGAGCACACCTAAAACTAC 58.833 47.826 6.58 0.00 0.00 2.73
9034 13960 5.301835 AGATCAGCCACATAAATAGCAGT 57.698 39.130 0.00 0.00 0.00 4.40
9051 13977 7.361971 CCAATGTGTATGTACAGCAAAAGATCA 60.362 37.037 0.33 0.00 36.78 2.92
9052 13978 6.968904 CCAATGTGTATGTACAGCAAAAGATC 59.031 38.462 0.33 0.00 36.78 2.75
9053 13979 6.625740 GCCAATGTGTATGTACAGCAAAAGAT 60.626 38.462 0.33 0.00 36.78 2.40
9132 14067 2.149578 GCTAGGCAATACAGGATGCAG 58.850 52.381 0.00 0.00 44.32 4.41
9139 14074 2.287188 CGGCAAATGCTAGGCAATACAG 60.287 50.000 5.25 0.00 43.62 2.74
9141 14076 1.946768 TCGGCAAATGCTAGGCAATAC 59.053 47.619 5.25 0.00 43.62 1.89
9184 14119 1.210478 GGTCAGACATACCCACATGCT 59.790 52.381 2.17 0.00 0.00 3.79
9185 14120 1.210478 AGGTCAGACATACCCACATGC 59.790 52.381 2.17 0.00 37.77 4.06
9186 14121 2.501316 TGAGGTCAGACATACCCACATG 59.499 50.000 2.17 0.00 37.77 3.21
9187 14122 2.768527 CTGAGGTCAGACATACCCACAT 59.231 50.000 2.17 0.00 46.59 3.21
9202 14137 3.335579 GGCAAATAGTTTCGTCTGAGGT 58.664 45.455 0.00 0.00 0.00 3.85
9207 14142 1.084289 GCGGGCAAATAGTTTCGTCT 58.916 50.000 0.00 0.00 0.00 4.18
9208 14143 0.098200 GGCGGGCAAATAGTTTCGTC 59.902 55.000 0.00 0.00 0.00 4.20
9209 14144 1.310216 GGGCGGGCAAATAGTTTCGT 61.310 55.000 3.27 0.00 0.00 3.85
9210 14145 1.309499 TGGGCGGGCAAATAGTTTCG 61.309 55.000 3.27 0.00 0.00 3.46
9214 14149 2.437716 CGTGGGCGGGCAAATAGT 60.438 61.111 3.27 0.00 0.00 2.12
9215 14150 2.043980 AACGTGGGCGGGCAAATAG 61.044 57.895 3.27 0.00 43.45 1.73
9217 14152 3.679738 CAACGTGGGCGGGCAAAT 61.680 61.111 3.27 0.00 43.45 2.32
9240 14175 0.179012 GTTCCACGTTCCCCTCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
9244 14179 1.373873 GTCGTTCCACGTTCCCCTC 60.374 63.158 0.00 0.00 43.14 4.30
9259 14195 5.468746 TCCATCTCAACAAAACCTAAAGTCG 59.531 40.000 0.00 0.00 0.00 4.18
9266 14202 2.158667 ACGGTCCATCTCAACAAAACCT 60.159 45.455 0.00 0.00 0.00 3.50
9278 14214 1.021390 CACCTCAAGCACGGTCCATC 61.021 60.000 0.00 0.00 0.00 3.51
9279 14215 1.003355 CACCTCAAGCACGGTCCAT 60.003 57.895 0.00 0.00 0.00 3.41
9284 14244 0.034059 AAGAGACACCTCAAGCACGG 59.966 55.000 0.00 0.00 41.87 4.94
9286 14246 2.545946 GTGAAAGAGACACCTCAAGCAC 59.454 50.000 0.00 0.00 41.87 4.40
9293 14253 2.630580 GTCCTGAGTGAAAGAGACACCT 59.369 50.000 0.00 0.00 38.82 4.00
9301 14261 1.263356 TACCCCGTCCTGAGTGAAAG 58.737 55.000 0.00 0.00 0.00 2.62
9322 14282 9.509956 AACTACTGAAGCTACTGGTATAGATAG 57.490 37.037 0.00 0.00 0.00 2.08
9323 14283 9.286170 CAACTACTGAAGCTACTGGTATAGATA 57.714 37.037 0.00 0.00 0.00 1.98
9326 14286 6.239064 CCCAACTACTGAAGCTACTGGTATAG 60.239 46.154 0.00 0.00 0.00 1.31
9331 14299 2.093447 CCCCAACTACTGAAGCTACTGG 60.093 54.545 0.00 0.00 0.00 4.00
9339 14307 2.419457 TACCACCCCCAACTACTGAA 57.581 50.000 0.00 0.00 0.00 3.02
9344 14312 3.009695 CACAGAAATACCACCCCCAACTA 59.990 47.826 0.00 0.00 0.00 2.24
9349 14317 0.996583 TCCACAGAAATACCACCCCC 59.003 55.000 0.00 0.00 0.00 5.40
9350 14318 2.891191 TTCCACAGAAATACCACCCC 57.109 50.000 0.00 0.00 0.00 4.95
9379 14615 5.418840 GGAATTTCTCTATTTTGAGTGCCCA 59.581 40.000 0.00 0.00 35.68 5.36
9383 14619 7.362401 CCACAGGGAATTTCTCTATTTTGAGTG 60.362 40.741 0.00 1.57 35.59 3.51
9418 14654 6.920758 TCCATCAAAATTAAGAACACCAAACG 59.079 34.615 0.00 0.00 0.00 3.60
9433 14669 3.053619 GGACAGGGGTACTCCATCAAAAT 60.054 47.826 15.95 0.00 37.22 1.82
9482 14721 2.608546 CGAAACAAGACCGGTGTACAAA 59.391 45.455 14.63 0.00 0.00 2.83
9503 14742 1.442017 GACGAACGCAAACATGGCC 60.442 57.895 0.00 0.00 0.00 5.36
9541 14780 5.208121 ACATCTTTTCCTCCAACAAAAGGA 58.792 37.500 4.72 0.00 39.24 3.36
9543 14782 6.183360 ACAGACATCTTTTCCTCCAACAAAAG 60.183 38.462 0.00 0.00 39.84 2.27
9560 14799 2.152699 CGCACCGACGACAGACATC 61.153 63.158 0.00 0.00 34.06 3.06
9561 14800 2.126463 CGCACCGACGACAGACAT 60.126 61.111 0.00 0.00 34.06 3.06
9562 14801 4.337060 CCGCACCGACGACAGACA 62.337 66.667 0.00 0.00 34.06 3.41
9563 14802 4.338539 ACCGCACCGACGACAGAC 62.339 66.667 0.00 0.00 34.06 3.51
9623 14881 2.146342 CTGGAAGCGAACTGTGTCATT 58.854 47.619 0.00 0.00 0.00 2.57
9662 14920 2.691526 CGCTGTTACCAGGATAGGTACA 59.308 50.000 0.00 0.00 43.57 2.90
9663 14921 2.545322 GCGCTGTTACCAGGATAGGTAC 60.545 54.545 0.00 0.00 43.57 3.34
9664 14922 1.684983 GCGCTGTTACCAGGATAGGTA 59.315 52.381 0.00 0.00 43.08 3.08
9665 14923 0.464452 GCGCTGTTACCAGGATAGGT 59.536 55.000 0.00 0.00 45.72 3.08
9669 14927 0.392998 CCTTGCGCTGTTACCAGGAT 60.393 55.000 9.73 0.00 39.22 3.24
9703 14961 5.406477 CCATATCCATGGCATATATTCGACG 59.594 44.000 6.96 0.00 45.29 5.12
9731 14989 6.631016 TCTGCAAAGTAACAGGAGTAGTATG 58.369 40.000 0.00 0.00 34.57 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.