Multiple sequence alignment - TraesCS1A01G288500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G288500 chr1A 100.000 4999 0 0 1 4999 485364051 485359053 0.000000e+00 9232.0
1 TraesCS1A01G288500 chr1B 88.642 2386 176 45 108 2446 518187087 518184750 0.000000e+00 2817.0
2 TraesCS1A01G288500 chr1B 87.975 1106 47 29 3441 4486 518183568 518182489 0.000000e+00 1227.0
3 TraesCS1A01G288500 chr1B 97.239 652 16 2 2794 3444 518184435 518183785 0.000000e+00 1103.0
4 TraesCS1A01G288500 chr1B 86.029 909 75 21 1067 1954 178971945 178972822 0.000000e+00 928.0
5 TraesCS1A01G288500 chr1B 85.751 393 37 7 1559 1951 490597456 490597829 1.010000e-106 398.0
6 TraesCS1A01G288500 chr1B 86.040 351 40 6 1166 1510 490597112 490597459 7.910000e-98 368.0
7 TraesCS1A01G288500 chr1B 93.200 250 16 1 2443 2692 518184680 518184432 2.840000e-97 366.0
8 TraesCS1A01G288500 chr1D 91.739 1961 101 27 506 2446 385813150 385811231 0.000000e+00 2667.0
9 TraesCS1A01G288500 chr1D 90.133 1277 90 20 2794 4041 385810917 385809648 0.000000e+00 1628.0
10 TraesCS1A01G288500 chr1D 90.160 935 61 15 4070 4982 385809556 385808631 0.000000e+00 1188.0
11 TraesCS1A01G288500 chr1D 82.759 1102 88 42 798 1874 24353426 24352402 0.000000e+00 889.0
12 TraesCS1A01G288500 chr1D 96.400 250 9 0 2443 2692 385811163 385810914 3.600000e-111 412.0
13 TraesCS1A01G288500 chr1D 77.044 318 48 23 1 300 385814064 385813754 5.180000e-35 159.0
14 TraesCS1A01G288500 chr1D 95.349 43 2 0 3316 3358 385810433 385810391 8.980000e-08 69.4
15 TraesCS1A01G288500 chr7A 85.748 849 70 27 1046 1874 104383060 104382243 0.000000e+00 850.0
16 TraesCS1A01G288500 chr7A 85.237 779 66 24 1076 1836 358383567 358384314 0.000000e+00 756.0
17 TraesCS1A01G288500 chr7A 95.763 118 5 0 2680 2797 619039544 619039661 1.840000e-44 191.0
18 TraesCS1A01G288500 chr7A 82.110 218 31 8 4596 4809 150427486 150427273 3.980000e-41 180.0
19 TraesCS1A01G288500 chr2A 85.956 826 68 21 1067 1874 547863463 547864258 0.000000e+00 839.0
20 TraesCS1A01G288500 chr2A 85.237 779 65 23 1076 1836 274139692 274140438 0.000000e+00 756.0
21 TraesCS1A01G288500 chr5B 85.490 827 69 19 1068 1874 629217232 629216437 0.000000e+00 815.0
22 TraesCS1A01G288500 chr4D 84.588 850 79 25 1046 1874 407023951 407023133 0.000000e+00 797.0
23 TraesCS1A01G288500 chr2D 87.209 516 39 13 1067 1567 584504592 584505095 3.380000e-156 562.0
24 TraesCS1A01G288500 chr2D 90.196 255 18 2 1623 1874 584515144 584515394 4.830000e-85 326.0
25 TraesCS1A01G288500 chr2B 86.768 393 33 7 1559 1951 9920890 9921263 2.150000e-113 420.0
26 TraesCS1A01G288500 chr2B 87.119 295 21 5 1166 1454 9920540 9920823 8.080000e-83 318.0
27 TraesCS1A01G288500 chr2B 99.091 110 1 0 2688 2797 623966833 623966724 1.100000e-46 198.0
28 TraesCS1A01G288500 chr5A 89.058 329 31 3 1623 1951 639312390 639312067 2.170000e-108 403.0
29 TraesCS1A01G288500 chr5A 89.078 293 20 7 1217 1503 639312730 639312444 2.210000e-93 353.0
30 TraesCS1A01G288500 chr5A 93.651 126 7 1 2680 2804 4707549 4707674 2.380000e-43 187.0
31 TraesCS1A01G288500 chr3B 93.902 164 9 1 1087 1249 605668167 605668004 3.870000e-61 246.0
32 TraesCS1A01G288500 chr3B 99.130 115 1 0 2684 2798 665983604 665983718 1.820000e-49 207.0
33 TraesCS1A01G288500 chr3A 89.000 200 17 5 1052 1249 600928919 600928723 5.000000e-60 243.0
34 TraesCS1A01G288500 chr3A 98.230 113 2 0 2685 2797 19299652 19299540 1.100000e-46 198.0
35 TraesCS1A01G288500 chr3D 93.293 164 10 1 1087 1249 458626622 458626459 1.800000e-59 241.0
36 TraesCS1A01G288500 chr3D 77.820 266 39 11 4597 4859 522130996 522131244 4.030000e-31 147.0
37 TraesCS1A01G288500 chr6B 98.198 111 2 0 2691 2801 646638167 646638277 1.420000e-45 195.0
38 TraesCS1A01G288500 chr7B 95.082 122 5 1 2685 2806 447705610 447705490 1.840000e-44 191.0
39 TraesCS1A01G288500 chr6A 96.522 115 4 0 2683 2797 535140101 535140215 1.840000e-44 191.0
40 TraesCS1A01G288500 chr4A 87.135 171 14 7 2671 2837 181949537 181949371 2.380000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G288500 chr1A 485359053 485364051 4998 True 9232.000000 9232 100.0000 1 4999 1 chr1A.!!$R1 4998
1 TraesCS1A01G288500 chr1B 518182489 518187087 4598 True 1378.250000 2817 91.7640 108 4486 4 chr1B.!!$R1 4378
2 TraesCS1A01G288500 chr1B 178971945 178972822 877 False 928.000000 928 86.0290 1067 1954 1 chr1B.!!$F1 887
3 TraesCS1A01G288500 chr1B 490597112 490597829 717 False 383.000000 398 85.8955 1166 1951 2 chr1B.!!$F2 785
4 TraesCS1A01G288500 chr1D 385808631 385814064 5433 True 1020.566667 2667 90.1375 1 4982 6 chr1D.!!$R2 4981
5 TraesCS1A01G288500 chr1D 24352402 24353426 1024 True 889.000000 889 82.7590 798 1874 1 chr1D.!!$R1 1076
6 TraesCS1A01G288500 chr7A 104382243 104383060 817 True 850.000000 850 85.7480 1046 1874 1 chr7A.!!$R1 828
7 TraesCS1A01G288500 chr7A 358383567 358384314 747 False 756.000000 756 85.2370 1076 1836 1 chr7A.!!$F1 760
8 TraesCS1A01G288500 chr2A 547863463 547864258 795 False 839.000000 839 85.9560 1067 1874 1 chr2A.!!$F2 807
9 TraesCS1A01G288500 chr2A 274139692 274140438 746 False 756.000000 756 85.2370 1076 1836 1 chr2A.!!$F1 760
10 TraesCS1A01G288500 chr5B 629216437 629217232 795 True 815.000000 815 85.4900 1068 1874 1 chr5B.!!$R1 806
11 TraesCS1A01G288500 chr4D 407023133 407023951 818 True 797.000000 797 84.5880 1046 1874 1 chr4D.!!$R1 828
12 TraesCS1A01G288500 chr2D 584504592 584505095 503 False 562.000000 562 87.2090 1067 1567 1 chr2D.!!$F1 500
13 TraesCS1A01G288500 chr2B 9920540 9921263 723 False 369.000000 420 86.9435 1166 1951 2 chr2B.!!$F1 785
14 TraesCS1A01G288500 chr5A 639312067 639312730 663 True 378.000000 403 89.0680 1217 1951 2 chr5A.!!$R1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 288 0.104120 TGACACCACCTCTCAACACG 59.896 55.000 0.00 0.00 0.00 4.49 F
261 289 0.104304 GACACCACCTCTCAACACGT 59.896 55.000 0.00 0.00 0.00 4.49 F
790 1245 0.457851 CTTCTCCAGCGTCGGATCTT 59.542 55.000 0.00 0.00 33.56 2.40 F
1667 2188 0.681733 TCAGCTTGGTGACTGAGGAC 59.318 55.000 0.00 0.00 37.99 3.85 F
1870 2396 1.002257 AACTGGGACATGCATGCGA 60.002 52.632 26.53 7.67 38.20 5.10 F
3358 3964 1.002366 CTGTTAAGCTGCTAGGCGTG 58.998 55.000 0.90 0.00 37.29 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 2132 0.976641 TGCCAACTACTCCAGGACAG 59.023 55.000 0.00 0.00 0.00 3.51 R
1612 2133 1.347707 CTTGCCAACTACTCCAGGACA 59.652 52.381 0.00 0.00 0.00 4.02 R
2779 3385 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30 R
2780 3386 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55 R
3601 4468 1.332686 CACATGAACATGGAGGATGCG 59.667 52.381 17.25 0.00 42.91 4.73 R
4487 5454 0.038892 AAGAAAAGCGCTGTGGCATG 60.039 50.000 12.58 0.00 38.60 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.153369 AGATTGGGATGTGGCGACG 60.153 57.895 0.00 0.00 0.00 5.12
47 48 1.198094 TGCCCGTGGAGATGGAAGAA 61.198 55.000 0.00 0.00 0.00 2.52
48 49 0.744771 GCCCGTGGAGATGGAAGAAC 60.745 60.000 0.00 0.00 0.00 3.01
56 57 2.360801 GGAGATGGAAGAACGAGGAGAG 59.639 54.545 0.00 0.00 0.00 3.20
63 64 3.555168 GGAAGAACGAGGAGAGAGCAAAA 60.555 47.826 0.00 0.00 0.00 2.44
67 68 0.898320 CGAGGAGAGAGCAAAAGGGA 59.102 55.000 0.00 0.00 0.00 4.20
68 69 1.276421 CGAGGAGAGAGCAAAAGGGAA 59.724 52.381 0.00 0.00 0.00 3.97
69 70 2.705730 GAGGAGAGAGCAAAAGGGAAC 58.294 52.381 0.00 0.00 0.00 3.62
71 72 1.002087 GGAGAGAGCAAAAGGGAACGA 59.998 52.381 0.00 0.00 0.00 3.85
72 73 2.342179 GAGAGAGCAAAAGGGAACGAG 58.658 52.381 0.00 0.00 0.00 4.18
73 74 0.799393 GAGAGCAAAAGGGAACGAGC 59.201 55.000 0.00 0.00 0.00 5.03
74 75 0.951040 AGAGCAAAAGGGAACGAGCG 60.951 55.000 0.00 0.00 0.00 5.03
75 76 1.912371 GAGCAAAAGGGAACGAGCGG 61.912 60.000 0.00 0.00 0.00 5.52
76 77 2.978018 GCAAAAGGGAACGAGCGGG 61.978 63.158 0.00 0.00 0.00 6.13
87 88 2.380410 CGAGCGGGGAAACAAGACG 61.380 63.158 0.00 0.00 0.00 4.18
119 120 7.554476 CCGAGAAATTTCTAGAGGAAAAGGAAT 59.446 37.037 24.75 0.00 45.56 3.01
135 163 0.881118 GAATGTGCGGGAAGAAGCAA 59.119 50.000 0.00 0.00 45.61 3.91
146 174 1.187567 AAGAAGCAATGTGTGGGCCC 61.188 55.000 17.59 17.59 0.00 5.80
148 176 3.465218 AAGCAATGTGTGGGCCCCA 62.465 57.895 22.27 14.62 0.00 4.96
163 191 3.803082 CCAAGGATGCGTGGCGTG 61.803 66.667 6.20 0.00 0.00 5.34
230 258 6.966632 CACAAATCATACATAAACCCTCAACG 59.033 38.462 0.00 0.00 0.00 4.10
242 270 9.289303 CATAAACCCTCAACGAAATAAAGAATG 57.711 33.333 0.00 0.00 0.00 2.67
260 288 0.104120 TGACACCACCTCTCAACACG 59.896 55.000 0.00 0.00 0.00 4.49
261 289 0.104304 GACACCACCTCTCAACACGT 59.896 55.000 0.00 0.00 0.00 4.49
302 350 1.074775 CAAACCAGGCACTAGGGCA 59.925 57.895 20.77 0.00 46.44 5.36
351 715 2.579787 GGTGCGTCGACGGAGATG 60.580 66.667 36.13 10.72 41.17 2.90
360 724 2.226912 GTCGACGGAGATGGAAGATAGG 59.773 54.545 0.00 0.00 0.00 2.57
382 746 0.827368 AGAGAGCAAAGGGATCGACC 59.173 55.000 0.00 0.00 36.90 4.79
383 747 0.528684 GAGAGCAAAGGGATCGACCG 60.529 60.000 0.00 0.00 36.90 4.79
384 748 1.521681 GAGCAAAGGGATCGACCGG 60.522 63.158 0.00 0.00 40.11 5.28
386 750 2.189521 CAAAGGGATCGACCGGGG 59.810 66.667 6.32 0.00 40.11 5.73
427 791 6.239345 GCCGAGAAATTTCTAGAGGATAAGGA 60.239 42.308 27.48 0.00 37.73 3.36
439 814 4.228438 AGAGGATAAGGAAGAAACAAGGGG 59.772 45.833 0.00 0.00 0.00 4.79
484 875 4.569023 CGAGGGCATGCGCGACTA 62.569 66.667 26.71 0.00 39.92 2.59
493 884 0.721718 ATGCGCGACTAGTTTTCAGC 59.278 50.000 12.10 0.00 0.00 4.26
515 969 1.862827 GGTTGAGTGTACGCGTTTTCT 59.137 47.619 20.78 13.36 0.00 2.52
537 991 8.877864 TTCTCACAAATCATACATAAACCCTT 57.122 30.769 0.00 0.00 0.00 3.95
538 992 9.967451 TTCTCACAAATCATACATAAACCCTTA 57.033 29.630 0.00 0.00 0.00 2.69
580 1034 1.210967 ACCTCTCACCACACGGAAAAA 59.789 47.619 0.00 0.00 35.59 1.94
699 1154 2.674177 CGCTCCGGGTGGCTATTTATAG 60.674 54.545 0.00 0.00 34.14 1.31
790 1245 0.457851 CTTCTCCAGCGTCGGATCTT 59.542 55.000 0.00 0.00 33.56 2.40
1460 1964 2.560542 CTGCAGAAGTACAGAGAGGTGT 59.439 50.000 8.42 0.00 35.90 4.16
1480 1999 1.185315 GTGCCCATTTAGCCATGTGT 58.815 50.000 0.00 0.00 0.00 3.72
1518 2039 5.324832 ACTAATTGGGGATGGATTAGTGG 57.675 43.478 7.07 0.00 36.87 4.00
1525 2046 2.024369 GGGATGGATTAGTGGTTTGGGT 60.024 50.000 0.00 0.00 0.00 4.51
1526 2047 3.565670 GGGATGGATTAGTGGTTTGGGTT 60.566 47.826 0.00 0.00 0.00 4.11
1527 2048 4.093743 GGATGGATTAGTGGTTTGGGTTT 58.906 43.478 0.00 0.00 0.00 3.27
1528 2049 4.081697 GGATGGATTAGTGGTTTGGGTTTG 60.082 45.833 0.00 0.00 0.00 2.93
1529 2050 3.235200 TGGATTAGTGGTTTGGGTTTGG 58.765 45.455 0.00 0.00 0.00 3.28
1530 2051 2.565391 GGATTAGTGGTTTGGGTTTGGG 59.435 50.000 0.00 0.00 0.00 4.12
1545 2066 0.979187 TTGGGAGTTAGGTAGGCCCG 60.979 60.000 0.00 0.00 41.79 6.13
1561 2082 3.070590 AGGCCCGTCGCTAGTTTAATATT 59.929 43.478 0.00 0.00 37.74 1.28
1611 2132 3.412237 TGGCACTTTGGTTAGTCCTAC 57.588 47.619 0.00 0.00 37.07 3.18
1612 2133 2.976882 TGGCACTTTGGTTAGTCCTACT 59.023 45.455 0.00 0.00 37.07 2.57
1613 2134 3.244422 TGGCACTTTGGTTAGTCCTACTG 60.244 47.826 0.00 0.00 37.07 2.74
1614 2135 3.244457 GGCACTTTGGTTAGTCCTACTGT 60.244 47.826 0.00 0.00 37.07 3.55
1615 2136 3.995048 GCACTTTGGTTAGTCCTACTGTC 59.005 47.826 0.00 0.00 37.07 3.51
1616 2137 4.566987 CACTTTGGTTAGTCCTACTGTCC 58.433 47.826 0.00 0.00 37.07 4.02
1617 2138 4.283722 CACTTTGGTTAGTCCTACTGTCCT 59.716 45.833 0.00 0.00 37.07 3.85
1618 2139 4.283722 ACTTTGGTTAGTCCTACTGTCCTG 59.716 45.833 0.00 0.00 37.07 3.86
1619 2140 2.816411 TGGTTAGTCCTACTGTCCTGG 58.184 52.381 0.00 0.00 37.07 4.45
1620 2141 2.380932 TGGTTAGTCCTACTGTCCTGGA 59.619 50.000 0.00 0.00 37.07 3.86
1621 2142 3.025262 GGTTAGTCCTACTGTCCTGGAG 58.975 54.545 0.00 0.00 0.00 3.86
1622 2143 3.563915 GGTTAGTCCTACTGTCCTGGAGT 60.564 52.174 0.00 0.00 37.33 3.85
1623 2144 4.324874 GGTTAGTCCTACTGTCCTGGAGTA 60.325 50.000 0.00 0.00 35.41 2.59
1646 2167 3.596940 TGGCAAGTTTAAACACCCCTA 57.403 42.857 20.06 1.42 0.00 3.53
1664 2185 3.529533 CCTATTCAGCTTGGTGACTGAG 58.470 50.000 1.72 1.02 43.43 3.35
1667 2188 0.681733 TCAGCTTGGTGACTGAGGAC 59.318 55.000 0.00 0.00 37.99 3.85
1712 2233 7.201679 CCAATCAGCTTATTGTCCTTAGAACAG 60.202 40.741 17.23 0.00 35.48 3.16
1752 2276 6.899089 TCCAATTACTGCCATTCAGATCTTA 58.101 36.000 0.00 0.00 45.72 2.10
1753 2277 7.345691 TCCAATTACTGCCATTCAGATCTTAA 58.654 34.615 0.00 0.00 45.72 1.85
1754 2278 7.833682 TCCAATTACTGCCATTCAGATCTTAAA 59.166 33.333 0.00 0.00 45.72 1.52
1755 2279 8.469200 CCAATTACTGCCATTCAGATCTTAAAA 58.531 33.333 0.00 0.00 45.72 1.52
1756 2280 9.859427 CAATTACTGCCATTCAGATCTTAAAAA 57.141 29.630 0.00 0.00 45.72 1.94
1817 2341 5.845985 TTCGAAGCACTAAGAATTGTCTG 57.154 39.130 0.00 0.00 33.05 3.51
1870 2396 1.002257 AACTGGGACATGCATGCGA 60.002 52.632 26.53 7.67 38.20 5.10
2017 2546 7.721286 AAGCTATGCATCATACTTACAAGTC 57.279 36.000 0.19 0.00 40.37 3.01
2089 2619 9.979270 CATTCAATACTTCTTAACACAGCTTAG 57.021 33.333 0.00 0.00 0.00 2.18
2103 2635 4.980434 CACAGCTTAGATTTTATGCATGGC 59.020 41.667 10.16 0.08 0.00 4.40
2119 2651 2.127271 TGGCCATTGGTCACTGTATG 57.873 50.000 5.72 0.00 29.54 2.39
2133 2665 5.297029 GTCACTGTATGCTTTTTATCCTCCC 59.703 44.000 0.00 0.00 0.00 4.30
2136 2668 4.792068 TGTATGCTTTTTATCCTCCCCTG 58.208 43.478 0.00 0.00 0.00 4.45
2141 2673 5.646215 TGCTTTTTATCCTCCCCTGTTTAA 58.354 37.500 0.00 0.00 0.00 1.52
2174 2706 5.922053 TCCATCTGACATGACTTATCTTGG 58.078 41.667 0.00 0.00 34.92 3.61
2199 2731 1.243342 TTCTGTTTGGCGGATGGCTG 61.243 55.000 0.00 0.00 42.94 4.85
2231 2763 4.217767 TGCAGACGGAGGTATGTGTATATC 59.782 45.833 0.00 0.00 37.68 1.63
2270 2802 3.751479 AAAAATGTGTTCCCTCCTTGC 57.249 42.857 0.00 0.00 0.00 4.01
2286 2818 4.502415 TCCTTGCATGGATTCCTCCTATA 58.498 43.478 17.00 0.00 42.59 1.31
2288 2820 5.190528 TCCTTGCATGGATTCCTCCTATATC 59.809 44.000 17.00 0.00 42.59 1.63
2293 2825 7.170965 TGCATGGATTCCTCCTATATCTTTTC 58.829 38.462 3.95 0.00 42.59 2.29
2313 2845 7.437862 TCTTTTCATGTGTTCTTTGCCATTTAC 59.562 33.333 0.00 0.00 0.00 2.01
2316 2848 3.300388 TGTGTTCTTTGCCATTTACCCA 58.700 40.909 0.00 0.00 0.00 4.51
2337 2869 8.166422 ACCCACAAAGTTTTCTGACTATTAAG 57.834 34.615 0.00 0.00 0.00 1.85
2372 2904 6.012113 AGTTGGAATCACTGGAAATTGATCA 58.988 36.000 0.00 0.00 30.96 2.92
2380 2912 7.149569 TCACTGGAAATTGATCATTTGAGAC 57.850 36.000 0.00 0.00 35.02 3.36
2401 2933 3.525199 ACTTTGAGCTATCCCATCCTGTT 59.475 43.478 0.00 0.00 0.00 3.16
2414 2946 4.991056 CCCATCCTGTTCATATCGTACTTG 59.009 45.833 0.00 0.00 0.00 3.16
2422 2955 9.261180 CCTGTTCATATCGTACTTGTATCATTT 57.739 33.333 0.00 0.00 0.00 2.32
2424 2957 9.594478 TGTTCATATCGTACTTGTATCATTTGT 57.406 29.630 0.00 0.00 0.00 2.83
2425 2958 9.849607 GTTCATATCGTACTTGTATCATTTGTG 57.150 33.333 0.00 0.00 0.00 3.33
2426 2959 8.072238 TCATATCGTACTTGTATCATTTGTGC 57.928 34.615 0.00 0.00 0.00 4.57
2427 2960 7.708752 TCATATCGTACTTGTATCATTTGTGCA 59.291 33.333 0.00 0.00 0.00 4.57
2647 3253 2.291741 GGTTGTTCTGTTGGCTTCTCTG 59.708 50.000 0.00 0.00 0.00 3.35
2691 3297 5.652014 CCCCATGATGCTTCTTTAACAAGTA 59.348 40.000 0.00 0.00 0.00 2.24
2692 3298 6.404734 CCCCATGATGCTTCTTTAACAAGTAC 60.405 42.308 0.00 0.00 0.00 2.73
2693 3299 6.375455 CCCATGATGCTTCTTTAACAAGTACT 59.625 38.462 0.00 0.00 0.00 2.73
2694 3300 7.414540 CCCATGATGCTTCTTTAACAAGTACTC 60.415 40.741 0.00 0.00 0.00 2.59
2695 3301 7.414540 CCATGATGCTTCTTTAACAAGTACTCC 60.415 40.741 0.00 0.00 0.00 3.85
2696 3302 5.938125 TGATGCTTCTTTAACAAGTACTCCC 59.062 40.000 0.00 0.00 0.00 4.30
2697 3303 5.562298 TGCTTCTTTAACAAGTACTCCCT 57.438 39.130 0.00 0.00 0.00 4.20
2698 3304 5.548406 TGCTTCTTTAACAAGTACTCCCTC 58.452 41.667 0.00 0.00 0.00 4.30
2699 3305 4.936411 GCTTCTTTAACAAGTACTCCCTCC 59.064 45.833 0.00 0.00 0.00 4.30
2700 3306 4.796038 TCTTTAACAAGTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
2701 3307 4.154942 TCTTTAACAAGTACTCCCTCCGT 58.845 43.478 0.00 0.00 0.00 4.69
2702 3308 4.590222 TCTTTAACAAGTACTCCCTCCGTT 59.410 41.667 0.00 0.00 0.00 4.44
2703 3309 4.525912 TTAACAAGTACTCCCTCCGTTC 57.474 45.455 0.00 0.00 0.00 3.95
2704 3310 2.005370 ACAAGTACTCCCTCCGTTCA 57.995 50.000 0.00 0.00 0.00 3.18
2705 3311 1.893801 ACAAGTACTCCCTCCGTTCAG 59.106 52.381 0.00 0.00 0.00 3.02
2706 3312 2.168496 CAAGTACTCCCTCCGTTCAGA 58.832 52.381 0.00 0.00 0.00 3.27
2707 3313 2.561419 CAAGTACTCCCTCCGTTCAGAA 59.439 50.000 0.00 0.00 0.00 3.02
2708 3314 3.103080 AGTACTCCCTCCGTTCAGAAT 57.897 47.619 0.00 0.00 0.00 2.40
2709 3315 3.442076 AGTACTCCCTCCGTTCAGAATT 58.558 45.455 0.00 0.00 0.00 2.17
2710 3316 4.607239 AGTACTCCCTCCGTTCAGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
2711 3317 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2712 3318 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2713 3319 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2714 3320 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2715 3321 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2716 3322 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2717 3323 3.612860 CCTCCGTTCAGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2718 3324 2.991190 TCCGTTCAGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2719 3325 2.734606 CCGTTCAGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2720 3326 3.181530 CCGTTCAGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
2721 3327 3.673338 CGTTCAGAATTACTTGTCGCAGA 59.327 43.478 0.00 0.00 0.00 4.26
2722 3328 4.149922 CGTTCAGAATTACTTGTCGCAGAA 59.850 41.667 0.00 0.00 39.69 3.02
2723 3329 5.333035 CGTTCAGAATTACTTGTCGCAGAAA 60.333 40.000 0.00 0.00 39.69 2.52
2724 3330 6.603095 GTTCAGAATTACTTGTCGCAGAAAT 58.397 36.000 0.00 0.00 39.69 2.17
2725 3331 6.169419 TCAGAATTACTTGTCGCAGAAATG 57.831 37.500 0.00 0.00 39.69 2.32
2726 3332 5.122239 TCAGAATTACTTGTCGCAGAAATGG 59.878 40.000 0.00 0.00 39.69 3.16
2727 3333 5.122239 CAGAATTACTTGTCGCAGAAATGGA 59.878 40.000 0.00 0.00 39.69 3.41
2728 3334 5.882557 AGAATTACTTGTCGCAGAAATGGAT 59.117 36.000 0.00 0.00 39.69 3.41
2729 3335 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2730 3336 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2731 3337 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2732 3338 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2733 3339 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2734 3340 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2735 3341 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2736 3342 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2737 3343 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2738 3344 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
2739 3345 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
2740 3346 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
2741 3347 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
2742 3348 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
2743 3349 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
2773 3379 9.778741 GTTTTAGATACATCCATATCCAAGACA 57.221 33.333 0.00 0.00 32.76 3.41
2776 3382 7.623999 AGATACATCCATATCCAAGACAAGT 57.376 36.000 0.00 0.00 32.76 3.16
2777 3383 8.727100 AGATACATCCATATCCAAGACAAGTA 57.273 34.615 0.00 0.00 32.76 2.24
2778 3384 9.159254 AGATACATCCATATCCAAGACAAGTAA 57.841 33.333 0.00 0.00 32.76 2.24
2779 3385 9.950496 GATACATCCATATCCAAGACAAGTAAT 57.050 33.333 0.00 0.00 0.00 1.89
2781 3387 8.682936 ACATCCATATCCAAGACAAGTAATTC 57.317 34.615 0.00 0.00 0.00 2.17
2782 3388 7.721399 ACATCCATATCCAAGACAAGTAATTCC 59.279 37.037 0.00 0.00 0.00 3.01
2783 3389 6.288294 TCCATATCCAAGACAAGTAATTCCG 58.712 40.000 0.00 0.00 0.00 4.30
2784 3390 6.099125 TCCATATCCAAGACAAGTAATTCCGA 59.901 38.462 0.00 0.00 0.00 4.55
2785 3391 6.765989 CCATATCCAAGACAAGTAATTCCGAA 59.234 38.462 0.00 0.00 0.00 4.30
2786 3392 7.254795 CCATATCCAAGACAAGTAATTCCGAAC 60.255 40.741 0.00 0.00 0.00 3.95
2787 3393 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
2788 3394 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
2789 3395 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
2790 3396 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2791 3397 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2792 3398 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2793 3399 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2794 3400 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2795 3401 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2923 3529 8.034215 AGTCATCTCTTCTTCTGTCAATACTTG 58.966 37.037 0.00 0.00 0.00 3.16
3044 3650 5.252164 AGGGGTTAGTATGCCTGTTTTCTTA 59.748 40.000 0.00 0.00 0.00 2.10
3156 3762 4.922206 TGCAACCTCAGGTGATTATCTTT 58.078 39.130 0.00 0.00 35.34 2.52
3295 3901 2.420372 TGTAGTTAGACTCAGCAGCTCG 59.580 50.000 0.00 0.00 0.00 5.03
3358 3964 1.002366 CTGTTAAGCTGCTAGGCGTG 58.998 55.000 0.90 0.00 37.29 5.34
3601 4468 2.284190 GAGCAAGTAGGATTGGCTCAC 58.716 52.381 7.04 0.00 35.37 3.51
3629 4496 4.281688 CCTCCATGTTCATGTGTTCCTTTT 59.718 41.667 11.13 0.00 0.00 2.27
3775 4642 4.453136 TGACGTGCCCAACTAAGTTTTATC 59.547 41.667 0.00 0.00 0.00 1.75
3811 4683 7.938490 AGAAATGCAAACCTTTTGGATATGTTT 59.062 29.630 6.13 0.00 44.07 2.83
3812 4684 7.671495 AATGCAAACCTTTTGGATATGTTTC 57.329 32.000 6.13 0.00 44.07 2.78
3843 4715 4.737279 TGTTTGACAACATGTTTGTATGCG 59.263 37.500 8.77 0.00 38.03 4.73
3855 4727 9.282126 ACATGTTTGTATGCGACGGAGTATCTA 62.282 40.741 0.00 0.00 35.43 1.98
3894 4784 5.585820 AATGTGTTTTTCTTTGGTACGGT 57.414 34.783 0.00 0.00 0.00 4.83
3901 4791 4.886247 TTTCTTTGGTACGGTGAACTTG 57.114 40.909 0.00 0.00 0.00 3.16
3905 4795 2.983907 TGGTACGGTGAACTTGTTCA 57.016 45.000 11.62 11.62 0.00 3.18
3912 4802 2.542178 CGGTGAACTTGTTCATTCGTCA 59.458 45.455 17.56 0.00 33.02 4.35
3916 4806 4.963953 GTGAACTTGTTCATTCGTCAACAG 59.036 41.667 17.56 0.00 34.07 3.16
3950 4840 8.952278 AGTTTAATGTAGTTGTGTTTTCTGACA 58.048 29.630 0.00 0.00 0.00 3.58
3968 4861 6.837312 TCTGACAATTCTCTTTTCCCTTGTA 58.163 36.000 0.00 0.00 0.00 2.41
4017 4910 3.829026 CTGAAGATATGGACCATCTCCGA 59.171 47.826 11.17 0.00 43.03 4.55
4028 4921 1.028130 CATCTCCGAGACTGCTGCTA 58.972 55.000 0.00 0.00 0.00 3.49
4059 4975 6.954487 AGGTACACGTCACTGAATCATATA 57.046 37.500 0.00 0.00 0.00 0.86
4106 5062 7.388776 TGTCTGATGCATTTCTAATATGTAGGC 59.611 37.037 0.00 0.00 0.00 3.93
4201 5157 0.978907 TCTGCCAGAACTGATGCTCA 59.021 50.000 3.19 0.00 0.00 4.26
4326 5292 0.605319 GTGGCTGTCATTCGGTTCCA 60.605 55.000 0.00 0.00 0.00 3.53
4333 5299 5.122396 GGCTGTCATTCGGTTCCATATAATC 59.878 44.000 0.00 0.00 0.00 1.75
4422 5388 5.552870 TGAGAAGAGTTGCTTTTAGTCCT 57.447 39.130 0.00 0.00 36.83 3.85
4428 5394 4.134563 GAGTTGCTTTTAGTCCTTCACCA 58.865 43.478 0.00 0.00 0.00 4.17
4445 5411 1.985159 ACCAACTCCCATGTGCTAAGA 59.015 47.619 0.00 0.00 0.00 2.10
4477 5443 0.179103 CGAATGCATTTTGCCCCTCC 60.179 55.000 14.33 0.00 44.23 4.30
4478 5444 1.197812 GAATGCATTTTGCCCCTCCT 58.802 50.000 14.33 0.00 44.23 3.69
4479 5445 0.906775 AATGCATTTTGCCCCTCCTG 59.093 50.000 5.99 0.00 44.23 3.86
4480 5446 1.619807 ATGCATTTTGCCCCTCCTGC 61.620 55.000 0.00 0.00 44.23 4.85
4481 5447 1.986210 GCATTTTGCCCCTCCTGCT 60.986 57.895 0.00 0.00 37.42 4.24
4482 5448 1.895238 CATTTTGCCCCTCCTGCTG 59.105 57.895 0.00 0.00 0.00 4.41
4484 5450 4.684134 TTTGCCCCTCCTGCTGCC 62.684 66.667 0.00 0.00 0.00 4.85
4496 5463 4.129737 GCTGCCTGCATGCCACAG 62.130 66.667 16.68 19.46 42.31 3.66
4509 5476 2.705730 TGCCACAGCGCTTTTCTTATA 58.294 42.857 7.50 0.00 44.31 0.98
4513 5480 2.677836 CACAGCGCTTTTCTTATAGGCA 59.322 45.455 7.50 0.00 0.00 4.75
4532 5499 1.561769 ATCTGGTTCACCCATGCGGA 61.562 55.000 7.17 0.00 44.15 5.54
4560 5531 9.431887 GATACTAACCAACTTCATGTCACTTAA 57.568 33.333 0.00 0.00 0.00 1.85
4590 5561 7.620215 ACAAATTTTGATTCAACACAACATCG 58.380 30.769 15.81 0.00 0.00 3.84
4628 5610 9.764363 GATTCAAAGGAGTTTTGTAGGATTTTT 57.236 29.630 0.22 0.00 45.17 1.94
4629 5611 8.940768 TTCAAAGGAGTTTTGTAGGATTTTTG 57.059 30.769 0.22 0.00 45.17 2.44
4735 5717 7.956420 ACGACTCATTTGTACTATGTTTTGA 57.044 32.000 0.00 0.00 0.00 2.69
4761 5743 5.456042 GGAAAATTTCATCCACCCAAACCTT 60.456 40.000 8.09 0.00 35.71 3.50
4769 5751 6.022315 TCATCCACCCAAACCTTTTGATATT 58.978 36.000 0.09 0.00 0.00 1.28
4770 5752 6.500049 TCATCCACCCAAACCTTTTGATATTT 59.500 34.615 0.09 0.00 0.00 1.40
4820 5802 3.120199 ACGCACTTTCATCCAAAATCGAG 60.120 43.478 0.00 0.00 0.00 4.04
4824 5806 5.335191 GCACTTTCATCCAAAATCGAGTTCT 60.335 40.000 0.00 0.00 0.00 3.01
4867 5849 9.941325 ACATGATATTCTATTCCTCTGTGAATC 57.059 33.333 0.00 0.00 36.41 2.52
4868 5850 9.939802 CATGATATTCTATTCCTCTGTGAATCA 57.060 33.333 0.00 0.00 36.41 2.57
4882 5869 3.017442 GTGAATCAAAGAGGCCCTTACC 58.983 50.000 0.00 0.00 34.00 2.85
4909 5896 1.549203 AACCAGGCCAATTACAGCAG 58.451 50.000 5.01 0.00 0.00 4.24
4922 5909 7.201732 GCCAATTACAGCAGAATTAGAGCTTTA 60.202 37.037 0.00 0.00 36.26 1.85
4926 5913 6.674694 ACAGCAGAATTAGAGCTTTACATG 57.325 37.500 0.00 0.00 36.26 3.21
4972 5959 2.040545 TCGGGCCTAGATTCCAAAAACA 59.959 45.455 0.84 0.00 0.00 2.83
4973 5960 3.023832 CGGGCCTAGATTCCAAAAACAT 58.976 45.455 0.84 0.00 0.00 2.71
4975 5962 4.036380 CGGGCCTAGATTCCAAAAACATAC 59.964 45.833 0.84 0.00 0.00 2.39
4982 5969 6.619801 AGATTCCAAAAACATACGGATAGC 57.380 37.500 0.00 0.00 0.00 2.97
4983 5970 6.119536 AGATTCCAAAAACATACGGATAGCA 58.880 36.000 0.00 0.00 0.00 3.49
4984 5971 5.554822 TTCCAAAAACATACGGATAGCAC 57.445 39.130 0.00 0.00 0.00 4.40
4985 5972 4.580868 TCCAAAAACATACGGATAGCACA 58.419 39.130 0.00 0.00 0.00 4.57
4986 5973 5.004448 TCCAAAAACATACGGATAGCACAA 58.996 37.500 0.00 0.00 0.00 3.33
4987 5974 5.473846 TCCAAAAACATACGGATAGCACAAA 59.526 36.000 0.00 0.00 0.00 2.83
4988 5975 6.016192 TCCAAAAACATACGGATAGCACAAAA 60.016 34.615 0.00 0.00 0.00 2.44
4989 5976 6.642950 CCAAAAACATACGGATAGCACAAAAA 59.357 34.615 0.00 0.00 0.00 1.94
4990 5977 7.330700 CCAAAAACATACGGATAGCACAAAAAT 59.669 33.333 0.00 0.00 0.00 1.82
4991 5978 9.347934 CAAAAACATACGGATAGCACAAAAATA 57.652 29.630 0.00 0.00 0.00 1.40
4992 5979 9.567848 AAAAACATACGGATAGCACAAAAATAG 57.432 29.630 0.00 0.00 0.00 1.73
4993 5980 6.861065 ACATACGGATAGCACAAAAATAGG 57.139 37.500 0.00 0.00 0.00 2.57
4994 5981 6.588204 ACATACGGATAGCACAAAAATAGGA 58.412 36.000 0.00 0.00 0.00 2.94
4995 5982 7.224297 ACATACGGATAGCACAAAAATAGGAT 58.776 34.615 0.00 0.00 0.00 3.24
4996 5983 7.719633 ACATACGGATAGCACAAAAATAGGATT 59.280 33.333 0.00 0.00 0.00 3.01
4997 5984 6.619801 ACGGATAGCACAAAAATAGGATTC 57.380 37.500 0.00 0.00 0.00 2.52
4998 5985 5.531287 ACGGATAGCACAAAAATAGGATTCC 59.469 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.450312 CTTCCATCTCCACGGGCAC 60.450 63.158 0.00 0.00 0.00 5.01
30 31 0.460284 CGTTCTTCCATCTCCACGGG 60.460 60.000 0.00 0.00 0.00 5.28
38 39 2.223711 GCTCTCTCCTCGTTCTTCCATC 60.224 54.545 0.00 0.00 0.00 3.51
47 48 0.610687 CCCTTTTGCTCTCTCCTCGT 59.389 55.000 0.00 0.00 0.00 4.18
48 49 0.898320 TCCCTTTTGCTCTCTCCTCG 59.102 55.000 0.00 0.00 0.00 4.63
56 57 1.497722 CGCTCGTTCCCTTTTGCTC 59.502 57.895 0.00 0.00 0.00 4.26
63 64 2.926242 TTTCCCCGCTCGTTCCCT 60.926 61.111 0.00 0.00 0.00 4.20
67 68 0.883370 GTCTTGTTTCCCCGCTCGTT 60.883 55.000 0.00 0.00 0.00 3.85
68 69 1.301479 GTCTTGTTTCCCCGCTCGT 60.301 57.895 0.00 0.00 0.00 4.18
69 70 2.380410 CGTCTTGTTTCCCCGCTCG 61.380 63.158 0.00 0.00 0.00 5.03
71 72 2.668550 GCGTCTTGTTTCCCCGCT 60.669 61.111 0.00 0.00 41.06 5.52
72 73 4.084888 CGCGTCTTGTTTCCCCGC 62.085 66.667 0.00 0.00 40.87 6.13
73 74 2.663852 ACGCGTCTTGTTTCCCCG 60.664 61.111 5.58 0.00 0.00 5.73
74 75 2.613506 CCACGCGTCTTGTTTCCCC 61.614 63.158 9.86 0.00 0.00 4.81
75 76 2.943653 CCACGCGTCTTGTTTCCC 59.056 61.111 9.86 0.00 0.00 3.97
76 77 2.251371 GCCACGCGTCTTGTTTCC 59.749 61.111 9.86 0.00 0.00 3.13
87 88 1.327764 CTAGAAATTTCTCGGCCACGC 59.672 52.381 23.70 0.00 40.69 5.34
88 89 2.860735 CTCTAGAAATTTCTCGGCCACG 59.139 50.000 23.70 5.86 38.70 4.94
119 120 0.537143 ACATTGCTTCTTCCCGCACA 60.537 50.000 0.00 0.00 35.60 4.57
135 163 2.248374 ATCCTTGGGGCCCACACAT 61.248 57.895 28.84 14.32 30.78 3.21
146 174 3.803082 CACGCCACGCATCCTTGG 61.803 66.667 0.00 0.00 33.69 3.61
191 219 0.736053 TTTGTGGGAAAGCACGTCAC 59.264 50.000 0.00 0.00 0.00 3.67
197 225 7.319646 GTTTATGTATGATTTGTGGGAAAGCA 58.680 34.615 0.00 0.00 0.00 3.91
230 258 6.655003 TGAGAGGTGGTGTCATTCTTTATTTC 59.345 38.462 0.00 0.00 0.00 2.17
242 270 0.104304 ACGTGTTGAGAGGTGGTGTC 59.896 55.000 0.00 0.00 0.00 3.67
260 288 0.749649 TGGCACATGGTGTTTTCCAC 59.250 50.000 0.00 0.00 43.74 4.02
261 289 1.411977 CTTGGCACATGGTGTTTTCCA 59.588 47.619 0.00 0.00 39.30 3.53
288 316 4.473520 CGGTGCCCTAGTGCCTGG 62.474 72.222 0.00 0.00 0.00 4.45
340 388 2.505405 CCTATCTTCCATCTCCGTCGA 58.495 52.381 0.00 0.00 0.00 4.20
351 715 2.390225 TGCTCTCTCCCCTATCTTCC 57.610 55.000 0.00 0.00 0.00 3.46
360 724 0.105778 CGATCCCTTTGCTCTCTCCC 59.894 60.000 0.00 0.00 0.00 4.30
382 746 1.227734 ACACGTCTTGTTTCCCCCG 60.228 57.895 0.00 0.00 33.09 5.73
383 747 1.170290 CCACACGTCTTGTTTCCCCC 61.170 60.000 0.00 0.00 35.67 5.40
384 748 1.792118 GCCACACGTCTTGTTTCCCC 61.792 60.000 0.00 0.00 35.67 4.81
386 750 1.652563 GGCCACACGTCTTGTTTCC 59.347 57.895 0.00 0.00 35.67 3.13
427 791 2.983592 CGCCGCCCCTTGTTTCTT 60.984 61.111 0.00 0.00 0.00 2.52
474 854 0.721718 GCTGAAAACTAGTCGCGCAT 59.278 50.000 8.75 0.00 0.00 4.73
475 855 1.289109 GGCTGAAAACTAGTCGCGCA 61.289 55.000 8.75 0.00 0.00 6.09
479 870 1.459592 CAACCGGCTGAAAACTAGTCG 59.540 52.381 0.00 0.00 42.50 4.18
483 874 2.158871 ACACTCAACCGGCTGAAAACTA 60.159 45.455 9.21 0.00 0.00 2.24
484 875 1.308998 CACTCAACCGGCTGAAAACT 58.691 50.000 9.21 0.00 0.00 2.66
493 884 1.216941 AAACGCGTACACTCAACCGG 61.217 55.000 14.46 0.00 0.00 5.28
537 991 8.052748 AGGTGGTGTGATTCTTTATTTGCTATA 58.947 33.333 0.00 0.00 0.00 1.31
538 992 6.891908 AGGTGGTGTGATTCTTTATTTGCTAT 59.108 34.615 0.00 0.00 0.00 2.97
539 993 6.245408 AGGTGGTGTGATTCTTTATTTGCTA 58.755 36.000 0.00 0.00 0.00 3.49
580 1034 1.599606 TTGCACTTTGGCACGTGGTT 61.600 50.000 18.88 0.00 44.86 3.67
591 1045 4.279043 GCGCCCGGTTTGCACTTT 62.279 61.111 0.00 0.00 0.00 2.66
1460 1964 1.184431 CACATGGCTAAATGGGCACA 58.816 50.000 0.00 0.00 44.25 4.57
1518 2039 2.953453 ACCTAACTCCCAAACCCAAAC 58.047 47.619 0.00 0.00 0.00 2.93
1525 2046 1.292085 GGGCCTACCTAACTCCCAAA 58.708 55.000 0.84 0.00 36.96 3.28
1526 2047 0.979187 CGGGCCTACCTAACTCCCAA 60.979 60.000 0.84 0.00 36.79 4.12
1527 2048 1.382146 CGGGCCTACCTAACTCCCA 60.382 63.158 0.84 0.00 36.79 4.37
1528 2049 1.382283 ACGGGCCTACCTAACTCCC 60.382 63.158 0.84 0.00 36.97 4.30
1529 2050 1.732417 CGACGGGCCTACCTAACTCC 61.732 65.000 0.84 0.00 36.97 3.85
1530 2051 1.732308 CGACGGGCCTACCTAACTC 59.268 63.158 0.84 0.00 36.97 3.01
1545 2066 6.412072 CAGCAGCAAAATATTAAACTAGCGAC 59.588 38.462 0.00 0.00 0.00 5.19
1611 2132 0.976641 TGCCAACTACTCCAGGACAG 59.023 55.000 0.00 0.00 0.00 3.51
1612 2133 1.347707 CTTGCCAACTACTCCAGGACA 59.652 52.381 0.00 0.00 0.00 4.02
1613 2134 1.348036 ACTTGCCAACTACTCCAGGAC 59.652 52.381 0.00 0.00 0.00 3.85
1614 2135 1.729586 ACTTGCCAACTACTCCAGGA 58.270 50.000 0.00 0.00 0.00 3.86
1615 2136 2.568623 AACTTGCCAACTACTCCAGG 57.431 50.000 0.00 0.00 0.00 4.45
1616 2137 5.298276 TGTTTAAACTTGCCAACTACTCCAG 59.702 40.000 18.72 0.00 0.00 3.86
1617 2138 5.066764 GTGTTTAAACTTGCCAACTACTCCA 59.933 40.000 18.72 0.00 0.00 3.86
1618 2139 5.506815 GGTGTTTAAACTTGCCAACTACTCC 60.507 44.000 18.72 0.00 0.00 3.85
1619 2140 5.506815 GGGTGTTTAAACTTGCCAACTACTC 60.507 44.000 18.72 2.25 0.00 2.59
1620 2141 4.340097 GGGTGTTTAAACTTGCCAACTACT 59.660 41.667 18.72 0.00 0.00 2.57
1621 2142 4.500205 GGGGTGTTTAAACTTGCCAACTAC 60.500 45.833 18.72 5.65 0.00 2.73
1622 2143 3.637694 GGGGTGTTTAAACTTGCCAACTA 59.362 43.478 18.72 0.00 0.00 2.24
1623 2144 2.432874 GGGGTGTTTAAACTTGCCAACT 59.567 45.455 18.72 0.00 0.00 3.16
1646 2167 1.980765 TCCTCAGTCACCAAGCTGAAT 59.019 47.619 0.00 0.00 40.68 2.57
1664 2185 3.570212 AGGCAGTGTGGGGTGTCC 61.570 66.667 0.00 0.00 0.00 4.02
1712 2233 5.405935 AATTGGAAGGATAAAGCAACACC 57.594 39.130 0.00 0.00 0.00 4.16
1787 2311 6.408858 TTCTTAGTGCTTCGAATCATTCAC 57.591 37.500 4.82 5.89 0.00 3.18
1817 2341 7.480810 ACTTCATTTTAATAGTTGGATTCCGC 58.519 34.615 0.00 0.00 0.00 5.54
1870 2396 4.130118 CCTGCACAAGAGAAAGTAGTGTT 58.870 43.478 0.00 0.00 32.99 3.32
2062 2592 7.383102 AGCTGTGTTAAGAAGTATTGAATGG 57.617 36.000 0.00 0.00 0.00 3.16
2066 2596 9.944376 AATCTAAGCTGTGTTAAGAAGTATTGA 57.056 29.630 0.00 0.00 0.00 2.57
2089 2619 4.060205 GACCAATGGCCATGCATAAAATC 58.940 43.478 21.63 5.19 0.00 2.17
2103 2635 4.789012 AAAAGCATACAGTGACCAATGG 57.211 40.909 0.00 0.00 0.00 3.16
2119 2651 6.183360 GGATTAAACAGGGGAGGATAAAAAGC 60.183 42.308 0.00 0.00 0.00 3.51
2133 2665 7.775093 TCAGATGGATAAACTGGATTAAACAGG 59.225 37.037 13.19 0.00 40.23 4.00
2136 2668 8.506168 TGTCAGATGGATAAACTGGATTAAAC 57.494 34.615 0.00 0.00 33.19 2.01
2141 2673 6.100859 AGTCATGTCAGATGGATAAACTGGAT 59.899 38.462 0.00 0.00 33.19 3.41
2174 2706 3.308530 CATCCGCCAAACAGAAGAAAAC 58.691 45.455 0.00 0.00 0.00 2.43
2246 2778 5.219633 CAAGGAGGGAACACATTTTTAACG 58.780 41.667 0.00 0.00 0.00 3.18
2258 2790 2.027385 GAATCCATGCAAGGAGGGAAC 58.973 52.381 16.89 2.41 41.90 3.62
2270 2802 9.175312 CATGAAAAGATATAGGAGGAATCCATG 57.825 37.037 0.61 0.00 0.00 3.66
2286 2818 5.534207 TGGCAAAGAACACATGAAAAGAT 57.466 34.783 0.00 0.00 0.00 2.40
2288 2820 6.607735 AAATGGCAAAGAACACATGAAAAG 57.392 33.333 0.00 0.00 0.00 2.27
2293 2825 4.244862 GGGTAAATGGCAAAGAACACATG 58.755 43.478 0.00 0.00 0.00 3.21
2313 2845 8.166422 ACTTAATAGTCAGAAAACTTTGTGGG 57.834 34.615 0.09 0.00 32.81 4.61
2337 2869 6.127897 CCAGTGATTCCAACTTCCATTAAGAC 60.128 42.308 0.00 0.00 38.67 3.01
2372 2904 5.441718 TGGGATAGCTCAAAGTCTCAAAT 57.558 39.130 0.00 0.00 0.00 2.32
2380 2912 3.853355 ACAGGATGGGATAGCTCAAAG 57.147 47.619 0.00 0.00 43.62 2.77
2401 2933 7.708752 TGCACAAATGATACAAGTACGATATGA 59.291 33.333 0.00 0.00 0.00 2.15
2414 2946 7.148755 GGTCAGTTGAAATTGCACAAATGATAC 60.149 37.037 17.29 11.66 46.79 2.24
2422 2955 3.384146 ACATGGTCAGTTGAAATTGCACA 59.616 39.130 0.00 0.00 0.00 4.57
2423 2956 3.981211 ACATGGTCAGTTGAAATTGCAC 58.019 40.909 0.00 0.00 0.00 4.57
2424 2957 4.669206 AACATGGTCAGTTGAAATTGCA 57.331 36.364 0.00 0.00 0.00 4.08
2425 2958 7.656707 AATTAACATGGTCAGTTGAAATTGC 57.343 32.000 0.00 0.00 0.00 3.56
2516 3122 5.186198 ACCTAGAAACAATGCATACAGGTC 58.814 41.667 0.00 0.00 0.00 3.85
2647 3253 3.490933 GGGAACAAAAGAACCAAGCAGTC 60.491 47.826 0.00 0.00 0.00 3.51
2691 3297 3.442076 AGTAATTCTGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2692 3298 4.184629 CAAGTAATTCTGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2693 3299 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2694 3300 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2695 3301 3.612860 CGACAAGTAATTCTGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2696 3302 3.060895 GCGACAAGTAATTCTGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
2697 3303 2.991190 GCGACAAGTAATTCTGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2698 3304 2.734606 TGCGACAAGTAATTCTGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
2699 3305 3.673338 TCTGCGACAAGTAATTCTGAACG 59.327 43.478 0.00 0.00 0.00 3.95
2700 3306 5.591643 TTCTGCGACAAGTAATTCTGAAC 57.408 39.130 0.00 0.00 0.00 3.18
2701 3307 6.348458 CCATTTCTGCGACAAGTAATTCTGAA 60.348 38.462 0.00 0.00 0.00 3.02
2702 3308 5.122239 CCATTTCTGCGACAAGTAATTCTGA 59.878 40.000 0.00 0.00 0.00 3.27
2703 3309 5.122239 TCCATTTCTGCGACAAGTAATTCTG 59.878 40.000 0.00 0.00 0.00 3.02
2704 3310 5.245531 TCCATTTCTGCGACAAGTAATTCT 58.754 37.500 0.00 0.00 0.00 2.40
2705 3311 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2706 3312 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2707 3313 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2708 3314 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2709 3315 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2710 3316 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2711 3317 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2712 3318 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2713 3319 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2714 3320 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2715 3321 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
2716 3322 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
2717 3323 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
2747 3353 9.778741 TGTCTTGGATATGGATGTATCTAAAAC 57.221 33.333 0.00 0.00 33.13 2.43
2750 3356 9.159254 ACTTGTCTTGGATATGGATGTATCTAA 57.841 33.333 0.00 0.00 32.72 2.10
2751 3357 8.727100 ACTTGTCTTGGATATGGATGTATCTA 57.273 34.615 0.00 0.00 32.78 1.98
2752 3358 7.623999 ACTTGTCTTGGATATGGATGTATCT 57.376 36.000 0.00 0.00 32.78 1.98
2753 3359 9.950496 ATTACTTGTCTTGGATATGGATGTATC 57.050 33.333 0.00 0.00 0.00 2.24
2755 3361 9.778741 GAATTACTTGTCTTGGATATGGATGTA 57.221 33.333 0.00 0.00 0.00 2.29
2756 3362 7.721399 GGAATTACTTGTCTTGGATATGGATGT 59.279 37.037 0.00 0.00 0.00 3.06
2757 3363 7.095060 CGGAATTACTTGTCTTGGATATGGATG 60.095 40.741 0.00 0.00 0.00 3.51
2758 3364 6.936900 CGGAATTACTTGTCTTGGATATGGAT 59.063 38.462 0.00 0.00 0.00 3.41
2759 3365 6.099125 TCGGAATTACTTGTCTTGGATATGGA 59.901 38.462 0.00 0.00 0.00 3.41
2760 3366 6.288294 TCGGAATTACTTGTCTTGGATATGG 58.712 40.000 0.00 0.00 0.00 2.74
2761 3367 7.516785 CGTTCGGAATTACTTGTCTTGGATATG 60.517 40.741 0.00 0.00 0.00 1.78
2762 3368 6.479001 CGTTCGGAATTACTTGTCTTGGATAT 59.521 38.462 0.00 0.00 0.00 1.63
2763 3369 5.808540 CGTTCGGAATTACTTGTCTTGGATA 59.191 40.000 0.00 0.00 0.00 2.59
2764 3370 4.630069 CGTTCGGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
2765 3371 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
2766 3372 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
2767 3373 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
2768 3374 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
2769 3375 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2770 3376 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2771 3377 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2772 3378 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2773 3379 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2774 3380 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2775 3381 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2776 3382 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2777 3383 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2778 3384 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
2779 3385 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
2780 3386 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
2781 3387 1.878734 GTATCTACTCCCTCCGTTCGG 59.121 57.143 4.74 4.74 0.00 4.30
2782 3388 2.848691 AGTATCTACTCCCTCCGTTCG 58.151 52.381 0.00 0.00 0.00 3.95
2783 3389 4.463070 AGAAGTATCTACTCCCTCCGTTC 58.537 47.826 0.00 0.00 34.99 3.95
2784 3390 4.523168 AGAAGTATCTACTCCCTCCGTT 57.477 45.455 0.00 0.00 34.99 4.44
2785 3391 4.523168 AAGAAGTATCTACTCCCTCCGT 57.477 45.455 0.00 0.00 34.99 4.69
2786 3392 5.623169 AGTAAGAAGTATCTACTCCCTCCG 58.377 45.833 0.00 0.00 34.99 4.63
2787 3393 7.170277 CCTAGTAAGAAGTATCTACTCCCTCC 58.830 46.154 0.00 0.00 34.99 4.30
2788 3394 7.170277 CCCTAGTAAGAAGTATCTACTCCCTC 58.830 46.154 0.00 0.00 34.99 4.30
2789 3395 6.045813 CCCCTAGTAAGAAGTATCTACTCCCT 59.954 46.154 0.00 0.00 34.99 4.20
2790 3396 6.183361 ACCCCTAGTAAGAAGTATCTACTCCC 60.183 46.154 0.00 0.00 34.99 4.30
2791 3397 6.851318 ACCCCTAGTAAGAAGTATCTACTCC 58.149 44.000 0.00 0.00 34.99 3.85
2792 3398 8.102676 CCTACCCCTAGTAAGAAGTATCTACTC 58.897 44.444 0.00 0.00 34.99 2.59
2793 3399 7.798599 TCCTACCCCTAGTAAGAAGTATCTACT 59.201 40.741 0.00 0.00 38.39 2.57
2794 3400 7.983363 TCCTACCCCTAGTAAGAAGTATCTAC 58.017 42.308 0.00 0.00 33.77 2.59
2795 3401 8.769566 ATCCTACCCCTAGTAAGAAGTATCTA 57.230 38.462 0.00 0.00 33.77 1.98
2859 3465 5.277250 TGTCACCCCTCTCATTTGTATAGA 58.723 41.667 0.00 0.00 0.00 1.98
2923 3529 3.892588 AGCTAGCTTACTATCACCCTGTC 59.107 47.826 12.68 0.00 0.00 3.51
3156 3762 8.394877 CCGACTAAAACATTGTCAAGCATATTA 58.605 33.333 0.00 0.00 33.98 0.98
3312 3918 5.411831 TTCTCAAGCTGCTGAATCTAGAA 57.588 39.130 1.35 3.97 0.00 2.10
3319 3925 3.562973 CAGAAGTTTCTCAAGCTGCTGAA 59.437 43.478 1.35 0.00 37.97 3.02
3601 4468 1.332686 CACATGAACATGGAGGATGCG 59.667 52.381 17.25 0.00 42.91 4.73
3775 4642 6.199937 AGGTTTGCATTTCTAATAGCACAG 57.800 37.500 0.00 0.00 36.62 3.66
3827 4699 2.158645 TCCGTCGCATACAAACATGTTG 59.841 45.455 12.82 8.99 0.00 3.33
3843 4715 9.583765 AAAAATTGTAGTCTTAGATACTCCGTC 57.416 33.333 0.00 0.00 0.00 4.79
3880 4770 4.263435 ACAAGTTCACCGTACCAAAGAAA 58.737 39.130 0.00 0.00 0.00 2.52
3894 4784 8.348565 CGACTGTTGACGAATGAACAAGTTCA 62.349 42.308 16.99 16.99 41.98 3.18
3901 4791 4.446857 TTTCGACTGTTGACGAATGAAC 57.553 40.909 0.00 0.00 45.82 3.18
3905 4795 6.780706 AAACTATTTCGACTGTTGACGAAT 57.219 33.333 0.00 0.00 45.82 3.34
3945 4835 6.486657 TGTACAAGGGAAAAGAGAATTGTCAG 59.513 38.462 5.28 0.00 33.31 3.51
3946 4836 6.361433 TGTACAAGGGAAAAGAGAATTGTCA 58.639 36.000 5.28 0.00 33.31 3.58
3947 4837 6.486993 ACTGTACAAGGGAAAAGAGAATTGTC 59.513 38.462 0.00 0.00 33.31 3.18
3948 4838 6.365520 ACTGTACAAGGGAAAAGAGAATTGT 58.634 36.000 0.00 0.00 35.28 2.71
3949 4839 6.884280 ACTGTACAAGGGAAAAGAGAATTG 57.116 37.500 0.00 0.00 0.00 2.32
3950 4840 6.940867 GGTACTGTACAAGGGAAAAGAGAATT 59.059 38.462 18.79 0.00 0.00 2.17
3968 4861 4.307259 AGATGTCCCCATTATGGTACTGT 58.693 43.478 10.65 2.20 35.17 3.55
4017 4910 2.023673 CTAGCAGAGTAGCAGCAGTCT 58.976 52.381 0.00 0.00 36.85 3.24
4028 4921 1.811359 GTGACGTGTACCTAGCAGAGT 59.189 52.381 0.00 0.00 0.00 3.24
4099 5055 0.322322 TGACGAAAACCCGCCTACAT 59.678 50.000 0.00 0.00 0.00 2.29
4106 5062 0.796312 CTCCACATGACGAAAACCCG 59.204 55.000 0.00 0.00 0.00 5.28
4142 5098 6.734281 ACTAATGGGGGTACTAAGAGTTTTCT 59.266 38.462 0.00 0.00 34.29 2.52
4147 5103 5.456779 GAGACTAATGGGGGTACTAAGAGT 58.543 45.833 0.00 0.00 0.00 3.24
4201 5157 0.407139 ACATCTGGGAAGCAGCCTTT 59.593 50.000 0.00 0.00 0.00 3.11
4326 5292 6.217693 GTCTCCCCCAAATACCCAGATTATAT 59.782 42.308 0.00 0.00 0.00 0.86
4333 5299 1.295020 TGTCTCCCCCAAATACCCAG 58.705 55.000 0.00 0.00 0.00 4.45
4422 5388 0.478072 AGCACATGGGAGTTGGTGAA 59.522 50.000 0.00 0.00 33.16 3.18
4428 5394 2.743183 GCGATCTTAGCACATGGGAGTT 60.743 50.000 0.00 0.00 34.19 3.01
4445 5411 1.134995 TGCATTCGTCTCAAGAGCGAT 60.135 47.619 14.10 0.00 37.05 4.58
4484 5450 2.758770 AAAAGCGCTGTGGCATGCAG 62.759 55.000 21.36 9.71 38.60 4.41
4487 5454 0.038892 AAGAAAAGCGCTGTGGCATG 60.039 50.000 12.58 0.00 38.60 4.06
4495 5462 3.812053 CAGATGCCTATAAGAAAAGCGCT 59.188 43.478 2.64 2.64 0.00 5.92
4496 5463 3.058639 CCAGATGCCTATAAGAAAAGCGC 60.059 47.826 0.00 0.00 0.00 5.92
4499 5466 6.038714 GGTGAACCAGATGCCTATAAGAAAAG 59.961 42.308 0.00 0.00 35.64 2.27
4509 5476 3.920817 TGGGTGAACCAGATGCCT 58.079 55.556 1.16 0.00 46.80 4.75
4532 5499 7.624549 AGTGACATGAAGTTGGTTAGTATCAT 58.375 34.615 0.00 0.00 0.00 2.45
4560 5531 8.825745 GTTGTGTTGAATCAAAATTTGTATGGT 58.174 29.630 5.56 0.00 0.00 3.55
4588 5559 0.606096 TGAATCAAAGGAGTCCGCGA 59.394 50.000 8.23 1.95 37.33 5.87
4590 5561 3.477899 CTTTGAATCAAAGGAGTCCGC 57.522 47.619 23.96 0.00 44.75 5.54
4616 5598 7.847711 TCCAAATCCTTCAAAAATCCTACAA 57.152 32.000 0.00 0.00 0.00 2.41
4617 5599 7.124147 GGATCCAAATCCTTCAAAAATCCTACA 59.876 37.037 6.95 0.00 46.97 2.74
4660 5642 4.183865 CTGCGAATCAAAGAGTCACCATA 58.816 43.478 0.00 0.00 0.00 2.74
4670 5652 4.604976 GATTCCAATCCTGCGAATCAAAG 58.395 43.478 0.00 0.00 38.19 2.77
4708 5690 9.689075 CAAAACATAGTACAAATGAGTCGTATG 57.311 33.333 13.42 3.37 0.00 2.39
4710 5692 9.478768 TTCAAAACATAGTACAAATGAGTCGTA 57.521 29.630 13.42 0.00 0.00 3.43
4712 5694 7.957484 CCTTCAAAACATAGTACAAATGAGTCG 59.043 37.037 13.42 2.41 0.00 4.18
4735 5717 5.456042 GGTTTGGGTGGATGAAATTTTCCTT 60.456 40.000 9.74 0.00 32.95 3.36
4743 5725 4.033709 TCAAAAGGTTTGGGTGGATGAAA 58.966 39.130 1.15 0.00 0.00 2.69
4774 5756 5.860941 TGATAGCACAGGAAAAACCAAAA 57.139 34.783 0.00 0.00 42.04 2.44
4778 5760 4.226761 CGTTTGATAGCACAGGAAAAACC 58.773 43.478 0.00 0.00 39.35 3.27
4842 5824 9.939802 TGATTCACAGAGGAATAGAATATCATG 57.060 33.333 0.00 0.00 37.61 3.07
4859 5841 2.503895 AGGGCCTCTTTGATTCACAG 57.496 50.000 0.00 0.00 0.00 3.66
4860 5842 2.978156 AAGGGCCTCTTTGATTCACA 57.022 45.000 6.46 0.00 29.99 3.58
4863 5845 3.054361 TCTGGTAAGGGCCTCTTTGATTC 60.054 47.826 6.46 0.00 36.93 2.52
4864 5846 2.919602 TCTGGTAAGGGCCTCTTTGATT 59.080 45.455 6.46 0.00 36.93 2.57
4865 5847 2.507471 CTCTGGTAAGGGCCTCTTTGAT 59.493 50.000 6.46 0.00 36.93 2.57
4866 5848 1.909302 CTCTGGTAAGGGCCTCTTTGA 59.091 52.381 6.46 1.11 36.93 2.69
4867 5849 1.065126 CCTCTGGTAAGGGCCTCTTTG 60.065 57.143 6.46 0.00 36.93 2.77
4868 5850 1.290134 CCTCTGGTAAGGGCCTCTTT 58.710 55.000 6.46 0.00 36.93 2.52
4903 5890 5.065731 GCATGTAAAGCTCTAATTCTGCTGT 59.934 40.000 0.00 0.00 37.11 4.40
4909 5896 4.336433 TGCTGGCATGTAAAGCTCTAATTC 59.664 41.667 14.65 0.00 37.82 2.17
4922 5909 1.001641 GGACCTTCTGCTGGCATGT 60.002 57.895 0.00 0.00 0.00 3.21
4926 5913 1.527433 GGTTTGGACCTTCTGCTGGC 61.527 60.000 0.00 0.00 42.99 4.85
4946 5933 1.309950 GGAATCTAGGCCCGAAAAGC 58.690 55.000 0.00 0.00 0.00 3.51
4952 5939 2.442413 TGTTTTTGGAATCTAGGCCCG 58.558 47.619 0.00 0.00 0.00 6.13
4972 5959 7.390718 GGAATCCTATTTTTGTGCTATCCGTAT 59.609 37.037 0.00 0.00 0.00 3.06
4973 5960 6.708949 GGAATCCTATTTTTGTGCTATCCGTA 59.291 38.462 0.00 0.00 0.00 4.02
4975 5962 6.002062 GGAATCCTATTTTTGTGCTATCCG 57.998 41.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.