Multiple sequence alignment - TraesCS1A01G288400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G288400 chr1A 100.000 5295 0 0 804 6098 485353187 485358481 0.000000e+00 9779
1 TraesCS1A01G288400 chr1A 100.000 560 0 0 1 560 485352384 485352943 0.000000e+00 1035
2 TraesCS1A01G288400 chr1A 79.720 143 29 0 4664 4806 485356990 485357132 3.010000e-18 104
3 TraesCS1A01G288400 chr1A 79.720 143 29 0 4607 4749 485357047 485357189 3.010000e-18 104
4 TraesCS1A01G288400 chr1D 95.414 5233 161 38 808 5995 385802971 385808169 0.000000e+00 8261
5 TraesCS1A01G288400 chr1D 92.806 278 19 1 1 278 385801980 385802256 9.520000e-108 401
6 TraesCS1A01G288400 chr1D 93.750 224 12 2 333 555 385802405 385802627 9.790000e-88 335
7 TraesCS1A01G288400 chr1D 79.720 143 29 0 4664 4806 385806777 385806919 3.010000e-18 104
8 TraesCS1A01G288400 chr1B 95.792 3018 92 12 808 3800 518176325 518179332 0.000000e+00 4837
9 TraesCS1A01G288400 chr1B 94.361 1791 87 7 3827 5605 518179326 518181114 0.000000e+00 2736
10 TraesCS1A01G288400 chr1B 90.391 281 27 0 1 281 518175647 518175927 2.680000e-98 370
11 TraesCS1A01G288400 chr1B 90.141 284 12 9 278 555 518176004 518176277 7.520000e-94 355
12 TraesCS1A01G288400 chr1B 94.643 112 3 2 5561 5670 518181112 518181222 2.920000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G288400 chr1A 485352384 485358481 6097 False 2755.50 9779 89.8600 1 6098 4 chr1A.!!$F1 6097
1 TraesCS1A01G288400 chr1D 385801980 385808169 6189 False 2275.25 8261 90.4225 1 5995 4 chr1D.!!$F1 5994
2 TraesCS1A01G288400 chr1B 518175647 518181222 5575 False 1693.80 4837 93.0656 1 5670 5 chr1B.!!$F1 5669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 482 0.316204 CTTGCCAGGCCTTTTCACTG 59.684 55.000 9.64 0.0 0.0 3.66 F
457 567 0.336048 CTGTTTCCCCCACCCATCAT 59.664 55.000 0.00 0.0 0.0 2.45 F
975 1179 1.034838 TCTCTTCTCTCCTCTGCGCC 61.035 60.000 4.18 0.0 0.0 6.53 F
1222 1444 1.293498 CCCGGGATGCTATTCGAGG 59.707 63.158 18.48 0.0 0.0 4.63 F
2310 2541 1.344438 GCATGGGTCGAGGATGATACA 59.656 52.381 0.00 0.0 0.0 2.29 F
2709 2940 3.325870 TGCGAATGAACTTACTGTGGAG 58.674 45.455 0.00 0.0 0.0 3.86 F
4108 4339 0.674895 GTGGGTACAGCAGCAGAAGG 60.675 60.000 0.00 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1418 0.249447 CATCTGGCGCACCTCGAATA 60.249 55.000 10.83 0.00 41.67 1.75 R
1520 1748 0.390340 TCAACGCTGCAGGCTAGAAG 60.390 55.000 17.12 0.00 39.13 2.85 R
2709 2940 0.793250 GTCTCCTCTTTGCGCACTTC 59.207 55.000 11.12 0.00 0.00 3.01 R
2957 3188 5.011431 CAGTAGGAGTCCTGCATATGATCAA 59.989 44.000 26.79 0.00 38.73 2.57 R
3753 3984 1.214589 CAGGTTCAGCTTGGCATGC 59.785 57.895 16.84 16.84 0.00 4.06 R
4398 4629 0.712380 ATTTCATCCCCTGGTGCCTT 59.288 50.000 0.00 0.00 0.00 4.35 R
5817 6116 0.032815 GGCCTTCCTCTCGATAGTGC 59.967 60.000 0.00 0.00 37.40 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.850557 CCATCATAAACATGGGCAACTAA 57.149 39.130 0.00 0.00 37.71 2.24
56 57 5.360714 ACATGGGCAACTAAATTAGACATGG 59.639 40.000 7.06 2.52 37.93 3.66
86 87 7.733773 TCATCATAGTTTCTTACTTCCCTCA 57.266 36.000 0.00 0.00 38.33 3.86
97 98 6.082707 TCTTACTTCCCTCAGAGGTAAACTT 58.917 40.000 15.86 0.00 43.95 2.66
98 99 4.625607 ACTTCCCTCAGAGGTAAACTTG 57.374 45.455 15.86 0.00 31.97 3.16
209 210 5.862924 TTCTTCGCCAAGAATTTGTCTAG 57.137 39.130 2.03 0.00 42.66 2.43
215 216 4.553547 CGCCAAGAATTTGTCTAGCATAGC 60.554 45.833 0.00 0.00 38.99 2.97
260 261 0.470456 AATGGTGCTGGGCCATATGG 60.470 55.000 18.07 18.07 45.21 2.74
285 286 8.763049 GCACTTTGCCTCTTTTATTTTAAGAT 57.237 30.769 0.00 0.00 37.42 2.40
370 480 1.667722 CCTTGCCAGGCCTTTTCAC 59.332 57.895 9.64 0.00 31.53 3.18
372 482 0.316204 CTTGCCAGGCCTTTTCACTG 59.684 55.000 9.64 0.00 0.00 3.66
381 491 3.273080 CTTTTCACTGGCAGGCCGC 62.273 63.158 20.34 10.60 39.42 6.53
450 560 1.681264 CAACAACTCTGTTTCCCCCAC 59.319 52.381 0.00 0.00 43.45 4.61
452 562 0.539669 CAACTCTGTTTCCCCCACCC 60.540 60.000 0.00 0.00 0.00 4.61
453 563 0.996762 AACTCTGTTTCCCCCACCCA 60.997 55.000 0.00 0.00 0.00 4.51
454 564 0.776080 ACTCTGTTTCCCCCACCCAT 60.776 55.000 0.00 0.00 0.00 4.00
456 566 0.774096 TCTGTTTCCCCCACCCATCA 60.774 55.000 0.00 0.00 0.00 3.07
457 567 0.336048 CTGTTTCCCCCACCCATCAT 59.664 55.000 0.00 0.00 0.00 2.45
461 571 3.511610 CCCCCACCCATCATCCCC 61.512 72.222 0.00 0.00 0.00 4.81
558 670 4.026357 ACACTCCCTCCCCCTCCC 62.026 72.222 0.00 0.00 0.00 4.30
862 1066 1.221021 CCAGGTAAACTCCCGAGCC 59.779 63.158 0.00 0.00 0.00 4.70
959 1163 1.067250 GAGCTCCGTGGCTGATCTC 59.933 63.158 0.87 0.00 43.20 2.75
960 1164 1.381056 AGCTCCGTGGCTGATCTCT 60.381 57.895 0.00 0.00 41.43 3.10
965 1169 1.110442 CCGTGGCTGATCTCTTCTCT 58.890 55.000 0.00 0.00 0.00 3.10
970 1174 2.244510 TGGCTGATCTCTTCTCTCCTCT 59.755 50.000 0.00 0.00 0.00 3.69
971 1175 2.624838 GGCTGATCTCTTCTCTCCTCTG 59.375 54.545 0.00 0.00 0.00 3.35
975 1179 1.034838 TCTCTTCTCTCCTCTGCGCC 61.035 60.000 4.18 0.00 0.00 6.53
1105 1309 1.755783 GCCCCAAGCAGGATTCTGG 60.756 63.158 2.40 0.00 42.97 3.86
1111 1315 2.045926 GCAGGATTCTGGTGCCGT 60.046 61.111 2.40 0.00 41.19 5.68
1187 1391 2.249413 CTGCCGCTGAGGTCAAGGAT 62.249 60.000 0.00 0.00 43.70 3.24
1216 1420 3.252284 CCTGGCCCGGGATGCTAT 61.252 66.667 29.31 0.00 29.82 2.97
1222 1444 1.293498 CCCGGGATGCTATTCGAGG 59.707 63.158 18.48 0.00 0.00 4.63
1259 1481 2.188994 GAAGAGGCAGATGCGGCT 59.811 61.111 0.00 0.00 45.92 5.52
1308 1536 2.270257 GCAGCTGGCATGGTTGTCA 61.270 57.895 17.12 0.00 43.97 3.58
1518 1746 4.608948 ACTGCTTATAGTAGATGCCACC 57.391 45.455 0.00 0.00 32.00 4.61
1520 1748 2.288825 TGCTTATAGTAGATGCCACCGC 60.289 50.000 0.72 0.00 0.00 5.68
1569 1797 3.026630 TCGCACTTCGTTTCAGAATCT 57.973 42.857 0.00 0.00 39.67 2.40
1596 1827 6.019479 GTGAACTCGGAGAATATCATGTCAAC 60.019 42.308 12.86 0.00 34.09 3.18
1702 1933 1.448365 CAGTGCGCCAGATACAGCA 60.448 57.895 4.18 0.00 37.26 4.41
1716 1947 2.777832 ACAGCATTCCTCCTCTTGAC 57.222 50.000 0.00 0.00 0.00 3.18
1734 1965 3.131396 TGACAAAGAAGGCTTTCGAGTC 58.869 45.455 17.65 17.65 42.27 3.36
1758 1989 4.020218 TCTGATCTTGTCTGGGGTAAAGTG 60.020 45.833 0.00 0.00 0.00 3.16
1800 2031 3.119291 CGGTGAGATCTTTGATCCTTCG 58.881 50.000 0.00 1.44 0.00 3.79
1832 2063 2.951269 TGGCATTGAAGCACCAGAG 58.049 52.632 0.00 0.00 35.83 3.35
2161 2392 5.187186 AGTCCAGAAAGCCTTCTTCGTTATA 59.813 40.000 0.00 0.00 40.05 0.98
2220 2451 6.150474 GTGATCTCCTAGAGTTAGTGATAGCC 59.850 46.154 0.00 0.00 0.00 3.93
2310 2541 1.344438 GCATGGGTCGAGGATGATACA 59.656 52.381 0.00 0.00 0.00 2.29
2315 2546 4.935578 TGGGTCGAGGATGATACAGATAT 58.064 43.478 0.00 0.00 0.00 1.63
2709 2940 3.325870 TGCGAATGAACTTACTGTGGAG 58.674 45.455 0.00 0.00 0.00 3.86
2957 3188 4.749785 GCCTTCTCCTGAGCTAGAGACTAT 60.750 50.000 9.50 0.00 38.83 2.12
3281 3512 3.768757 AGGTCAACTGATCTTCTCTCAGG 59.231 47.826 5.41 0.00 43.58 3.86
3284 3515 5.279708 GGTCAACTGATCTTCTCTCAGGAAA 60.280 44.000 5.41 0.00 43.58 3.13
3335 3566 4.766891 TGGCCCACTAAAAGAATCTGAAAG 59.233 41.667 0.00 0.00 0.00 2.62
3753 3984 6.092670 TGAACAAGTTGAGACTGTCAAGAAAG 59.907 38.462 10.54 0.00 46.18 2.62
3948 4179 4.397420 TCAAGCTCCAAAAGATGCAGTTA 58.603 39.130 0.00 0.00 0.00 2.24
4108 4339 0.674895 GTGGGTACAGCAGCAGAAGG 60.675 60.000 0.00 0.00 0.00 3.46
4398 4629 0.472925 TACTGCAGGGACACTTGGGA 60.473 55.000 19.93 0.00 0.00 4.37
4409 4640 2.036256 CTTGGGAAGGCACCAGGG 59.964 66.667 0.00 0.00 39.57 4.45
4433 4664 3.509442 TGAAATGGAAAACAGGGATGCT 58.491 40.909 0.00 0.00 0.00 3.79
4444 4675 0.106819 AGGGATGCTGCTGAATCACC 60.107 55.000 10.11 9.86 31.80 4.02
4529 4760 1.881925 GCACTTGCTGGTATGTCCACA 60.882 52.381 0.00 0.00 41.93 4.17
4714 4945 0.706433 AAACCAGTGGAGGATGCCAT 59.294 50.000 18.40 0.00 40.68 4.40
4965 5196 6.279513 TGCCATGTTTTGTATAGGAAAAGG 57.720 37.500 0.00 0.00 0.00 3.11
4994 5225 0.528684 GTCTGACCCTAGCATCGCAC 60.529 60.000 0.00 0.00 0.00 5.34
5032 5263 7.736447 GCTAAGGCTATAGCATATATTTGGG 57.264 40.000 25.53 6.38 46.06 4.12
5049 5280 1.077005 TGGGCCCTTTCACATAAGCTT 59.923 47.619 25.70 3.48 0.00 3.74
5248 5479 7.170277 TGGGACATCATATGATTCTTGTATGG 58.830 38.462 15.74 4.15 31.21 2.74
5401 5633 1.013596 CGCGCCATGTTTATTCCTGA 58.986 50.000 0.00 0.00 0.00 3.86
5534 5766 6.554334 TTAGATTGTTTTCTGTCCTTTCGG 57.446 37.500 0.00 0.00 0.00 4.30
5543 5775 5.932619 TTCTGTCCTTTCGGAATCTATGA 57.067 39.130 0.00 0.00 42.08 2.15
5553 5785 4.537751 TCGGAATCTATGACTGGACTTCT 58.462 43.478 0.00 0.00 0.00 2.85
5554 5786 4.956700 TCGGAATCTATGACTGGACTTCTT 59.043 41.667 0.00 0.00 0.00 2.52
5555 5787 5.067936 TCGGAATCTATGACTGGACTTCTTC 59.932 44.000 0.00 0.00 0.00 2.87
5556 5788 5.163509 CGGAATCTATGACTGGACTTCTTCA 60.164 44.000 0.00 0.00 0.00 3.02
5611 5896 9.717942 GATAGTAATGGCTGAGTTTGAAGATAT 57.282 33.333 0.00 0.00 0.00 1.63
5734 6021 1.808411 ACCAGTTACAACATGCCTCG 58.192 50.000 0.00 0.00 0.00 4.63
5800 6099 1.172180 ACACCAGACACAATTGGCCG 61.172 55.000 10.83 0.21 38.03 6.13
5801 6100 1.603455 ACCAGACACAATTGGCCGG 60.603 57.895 10.83 0.00 38.03 6.13
5802 6101 2.568090 CAGACACAATTGGCCGGC 59.432 61.111 21.18 21.18 0.00 6.13
5805 6104 2.990967 ACACAATTGGCCGGCCTG 60.991 61.111 43.34 34.69 36.94 4.85
5806 6105 2.990967 CACAATTGGCCGGCCTGT 60.991 61.111 43.34 35.37 36.94 4.00
5807 6106 2.676471 ACAATTGGCCGGCCTGTC 60.676 61.111 43.34 20.30 36.94 3.51
5811 6110 2.552231 AATTGGCCGGCCTGTCTACC 62.552 60.000 43.34 17.51 36.94 3.18
5814 6113 4.468689 GCCGGCCTGTCTACCCAC 62.469 72.222 18.11 0.00 0.00 4.61
5815 6114 3.000819 CCGGCCTGTCTACCCACA 61.001 66.667 0.00 0.00 0.00 4.17
5816 6115 2.367202 CCGGCCTGTCTACCCACAT 61.367 63.158 0.00 0.00 0.00 3.21
5817 6116 1.153369 CGGCCTGTCTACCCACATG 60.153 63.158 0.00 0.00 0.00 3.21
5818 6117 1.452108 GGCCTGTCTACCCACATGC 60.452 63.158 0.00 0.00 37.23 4.06
5824 6123 3.493350 CCTGTCTACCCACATGCACTATC 60.493 52.174 0.00 0.00 0.00 2.08
5839 6138 0.676736 CTATCGAGAGGAAGGCCACC 59.323 60.000 5.01 8.40 36.29 4.61
5860 6159 2.383527 CGAGGTTGTCCGCAAGAGC 61.384 63.158 0.00 0.00 43.02 4.09
5871 6170 3.610242 GTCCGCAAGAGCTATATTCATCG 59.390 47.826 0.00 0.00 43.02 3.84
5875 6174 4.151335 CGCAAGAGCTATATTCATCGCTTT 59.849 41.667 0.00 0.00 33.58 3.51
5893 6192 3.616821 GCTTTTTCCTGACCAAACAACAC 59.383 43.478 0.00 0.00 0.00 3.32
5912 6211 2.155732 CACCGACTTCGTCACATTGAAG 59.844 50.000 0.00 0.71 45.53 3.02
5916 6215 1.873591 ACTTCGTCACATTGAAGCACC 59.126 47.619 2.10 0.00 44.24 5.01
5917 6216 1.872952 CTTCGTCACATTGAAGCACCA 59.127 47.619 0.00 0.00 35.63 4.17
5918 6217 1.960417 TCGTCACATTGAAGCACCAA 58.040 45.000 0.00 0.00 0.00 3.67
5919 6218 1.601903 TCGTCACATTGAAGCACCAAC 59.398 47.619 0.00 0.00 0.00 3.77
5920 6219 1.660052 CGTCACATTGAAGCACCAACG 60.660 52.381 0.00 0.00 0.00 4.10
5921 6220 1.601903 GTCACATTGAAGCACCAACGA 59.398 47.619 0.00 0.00 0.00 3.85
5922 6221 1.872952 TCACATTGAAGCACCAACGAG 59.127 47.619 0.00 0.00 0.00 4.18
5923 6222 0.593128 ACATTGAAGCACCAACGAGC 59.407 50.000 0.00 0.00 0.00 5.03
5927 6226 2.594592 AAGCACCAACGAGCCACC 60.595 61.111 0.00 0.00 0.00 4.61
5932 6231 2.669569 CCAACGAGCCACCAGGTG 60.670 66.667 13.35 13.35 37.19 4.00
5961 6260 3.918253 TAGCTGCCCAAAGCCCACG 62.918 63.158 0.00 0.00 44.68 4.94
5995 6294 1.821759 CAACCGGCCACACTCACAA 60.822 57.895 0.00 0.00 0.00 3.33
5996 6295 1.077357 AACCGGCCACACTCACAAA 60.077 52.632 0.00 0.00 0.00 2.83
5997 6296 0.467290 AACCGGCCACACTCACAAAT 60.467 50.000 0.00 0.00 0.00 2.32
5998 6297 0.398696 ACCGGCCACACTCACAAATA 59.601 50.000 0.00 0.00 0.00 1.40
5999 6298 1.086696 CCGGCCACACTCACAAATAG 58.913 55.000 2.24 0.00 0.00 1.73
6000 6299 0.447801 CGGCCACACTCACAAATAGC 59.552 55.000 2.24 0.00 0.00 2.97
6001 6300 1.826385 GGCCACACTCACAAATAGCT 58.174 50.000 0.00 0.00 0.00 3.32
6002 6301 1.470098 GGCCACACTCACAAATAGCTG 59.530 52.381 0.00 0.00 0.00 4.24
6003 6302 1.135575 GCCACACTCACAAATAGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
6004 6303 1.470098 CCACACTCACAAATAGCTGCC 59.530 52.381 0.00 0.00 0.00 4.85
6005 6304 1.470098 CACACTCACAAATAGCTGCCC 59.530 52.381 0.00 0.00 0.00 5.36
6006 6305 1.073763 ACACTCACAAATAGCTGCCCA 59.926 47.619 0.00 0.00 0.00 5.36
6007 6306 2.161855 CACTCACAAATAGCTGCCCAA 58.838 47.619 0.00 0.00 0.00 4.12
6008 6307 2.756760 CACTCACAAATAGCTGCCCAAT 59.243 45.455 0.00 0.00 0.00 3.16
6009 6308 3.194116 CACTCACAAATAGCTGCCCAATT 59.806 43.478 0.00 0.00 0.00 2.32
6010 6309 3.834231 ACTCACAAATAGCTGCCCAATTT 59.166 39.130 0.00 0.00 0.00 1.82
6011 6310 5.016173 ACTCACAAATAGCTGCCCAATTTA 58.984 37.500 0.00 0.00 0.00 1.40
6012 6311 5.126061 ACTCACAAATAGCTGCCCAATTTAG 59.874 40.000 0.00 0.00 0.00 1.85
6013 6312 4.114794 CACAAATAGCTGCCCAATTTAGC 58.885 43.478 0.00 0.00 37.71 3.09
6014 6313 3.181487 ACAAATAGCTGCCCAATTTAGCG 60.181 43.478 0.00 0.00 42.10 4.26
6015 6314 2.638480 ATAGCTGCCCAATTTAGCGA 57.362 45.000 0.00 0.00 42.10 4.93
6016 6315 2.411628 TAGCTGCCCAATTTAGCGAA 57.588 45.000 0.00 0.00 42.10 4.70
6017 6316 1.098050 AGCTGCCCAATTTAGCGAAG 58.902 50.000 0.00 0.00 42.10 3.79
6018 6317 0.811281 GCTGCCCAATTTAGCGAAGT 59.189 50.000 0.00 0.00 0.00 3.01
6019 6318 1.202348 GCTGCCCAATTTAGCGAAGTT 59.798 47.619 0.00 0.00 0.00 2.66
6020 6319 2.732282 GCTGCCCAATTTAGCGAAGTTC 60.732 50.000 0.00 0.00 0.00 3.01
6021 6320 1.466950 TGCCCAATTTAGCGAAGTTCG 59.533 47.619 20.87 20.87 43.89 3.95
6034 6333 3.940303 CGAAGTTCGCTTTATCATTGGG 58.060 45.455 13.08 0.00 37.61 4.12
6035 6334 3.695816 GAAGTTCGCTTTATCATTGGGC 58.304 45.455 0.00 0.00 37.61 5.36
6036 6335 2.024414 AGTTCGCTTTATCATTGGGCC 58.976 47.619 0.00 0.00 0.00 5.80
6037 6336 2.024414 GTTCGCTTTATCATTGGGCCT 58.976 47.619 4.53 0.00 0.00 5.19
6038 6337 1.679139 TCGCTTTATCATTGGGCCTG 58.321 50.000 4.53 0.00 0.00 4.85
6039 6338 0.670162 CGCTTTATCATTGGGCCTGG 59.330 55.000 4.53 0.00 0.00 4.45
6040 6339 0.390492 GCTTTATCATTGGGCCTGGC 59.610 55.000 11.05 11.05 0.00 4.85
6054 6353 4.892965 TGGCCGCTGTGCTTGGTT 62.893 61.111 0.00 0.00 0.00 3.67
6055 6354 2.671619 GGCCGCTGTGCTTGGTTA 60.672 61.111 0.00 0.00 0.00 2.85
6056 6355 2.690778 GGCCGCTGTGCTTGGTTAG 61.691 63.158 0.00 0.00 0.00 2.34
6057 6356 2.690778 GCCGCTGTGCTTGGTTAGG 61.691 63.158 0.00 0.00 0.00 2.69
6058 6357 1.003839 CCGCTGTGCTTGGTTAGGA 60.004 57.895 0.00 0.00 0.00 2.94
6059 6358 1.298859 CCGCTGTGCTTGGTTAGGAC 61.299 60.000 0.00 0.00 44.78 3.85
6063 6362 2.556286 GTGCTTGGTTAGGACAGCC 58.444 57.895 0.00 0.00 44.03 4.85
6064 6363 0.250727 GTGCTTGGTTAGGACAGCCA 60.251 55.000 0.00 0.00 44.03 4.75
6065 6364 0.250727 TGCTTGGTTAGGACAGCCAC 60.251 55.000 0.00 0.00 37.23 5.01
6066 6365 0.250727 GCTTGGTTAGGACAGCCACA 60.251 55.000 0.00 0.00 37.23 4.17
6067 6366 1.614317 GCTTGGTTAGGACAGCCACAT 60.614 52.381 0.00 0.00 37.23 3.21
6068 6367 2.086869 CTTGGTTAGGACAGCCACATG 58.913 52.381 0.00 0.00 37.23 3.21
6069 6368 0.327924 TGGTTAGGACAGCCACATGG 59.672 55.000 0.00 0.00 31.56 3.66
6070 6369 0.328258 GGTTAGGACAGCCACATGGT 59.672 55.000 0.00 0.00 37.57 3.55
6071 6370 1.679032 GGTTAGGACAGCCACATGGTC 60.679 57.143 0.00 0.00 37.57 4.02
6072 6371 1.279271 GTTAGGACAGCCACATGGTCT 59.721 52.381 0.00 0.00 37.57 3.85
6073 6372 1.656587 TAGGACAGCCACATGGTCTT 58.343 50.000 0.00 0.00 37.57 3.01
6074 6373 0.326264 AGGACAGCCACATGGTCTTC 59.674 55.000 0.00 0.00 37.57 2.87
6075 6374 0.678048 GGACAGCCACATGGTCTTCC 60.678 60.000 0.00 0.00 37.57 3.46
6076 6375 1.003355 ACAGCCACATGGTCTTCCG 60.003 57.895 0.00 0.00 37.57 4.30
6077 6376 1.003355 CAGCCACATGGTCTTCCGT 60.003 57.895 0.00 0.00 37.57 4.69
6078 6377 0.606401 CAGCCACATGGTCTTCCGTT 60.606 55.000 0.00 0.00 37.57 4.44
6079 6378 0.321653 AGCCACATGGTCTTCCGTTC 60.322 55.000 0.00 0.00 37.57 3.95
6080 6379 1.635663 GCCACATGGTCTTCCGTTCG 61.636 60.000 0.00 0.00 37.57 3.95
6081 6380 0.320421 CCACATGGTCTTCCGTTCGT 60.320 55.000 0.00 0.00 36.30 3.85
6082 6381 1.068474 CACATGGTCTTCCGTTCGTC 58.932 55.000 0.00 0.00 36.30 4.20
6083 6382 0.966920 ACATGGTCTTCCGTTCGTCT 59.033 50.000 0.00 0.00 36.30 4.18
6084 6383 1.067776 ACATGGTCTTCCGTTCGTCTC 60.068 52.381 0.00 0.00 36.30 3.36
6085 6384 1.202582 CATGGTCTTCCGTTCGTCTCT 59.797 52.381 0.00 0.00 36.30 3.10
6086 6385 0.596577 TGGTCTTCCGTTCGTCTCTG 59.403 55.000 0.00 0.00 36.30 3.35
6087 6386 0.733223 GGTCTTCCGTTCGTCTCTGC 60.733 60.000 0.00 0.00 0.00 4.26
6088 6387 0.733223 GTCTTCCGTTCGTCTCTGCC 60.733 60.000 0.00 0.00 0.00 4.85
6089 6388 1.176619 TCTTCCGTTCGTCTCTGCCA 61.177 55.000 0.00 0.00 0.00 4.92
6090 6389 1.006571 TTCCGTTCGTCTCTGCCAC 60.007 57.895 0.00 0.00 0.00 5.01
6091 6390 1.740332 TTCCGTTCGTCTCTGCCACA 61.740 55.000 0.00 0.00 0.00 4.17
6092 6391 1.300620 CCGTTCGTCTCTGCCACAA 60.301 57.895 0.00 0.00 0.00 3.33
6093 6392 0.670546 CCGTTCGTCTCTGCCACAAT 60.671 55.000 0.00 0.00 0.00 2.71
6094 6393 0.439985 CGTTCGTCTCTGCCACAATG 59.560 55.000 0.00 0.00 0.00 2.82
6095 6394 0.798776 GTTCGTCTCTGCCACAATGG 59.201 55.000 0.00 0.00 41.55 3.16
6096 6395 0.396435 TTCGTCTCTGCCACAATGGT 59.604 50.000 0.00 0.00 40.46 3.55
6097 6396 0.320683 TCGTCTCTGCCACAATGGTG 60.321 55.000 0.00 0.00 44.85 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.878953 ACACCGCAAGTTTACCTCTG 58.121 50.000 0.00 0.00 0.00 3.35
86 87 3.756933 TTACACCGCAAGTTTACCTCT 57.243 42.857 0.00 0.00 0.00 3.69
97 98 3.960237 CGAAGCCTTTACACCGCA 58.040 55.556 0.00 0.00 0.00 5.69
209 210 3.742882 TGTATCGAGCATTTGAGCTATGC 59.257 43.478 11.30 11.30 46.75 3.14
215 216 5.784750 TGACTTTGTATCGAGCATTTGAG 57.215 39.130 0.00 0.00 0.00 3.02
260 261 8.763049 ATCTTAAAATAAAAGAGGCAAAGTGC 57.237 30.769 0.00 0.00 37.44 4.40
291 378 0.467290 TTCCAGGCCTTCTGCGTTTT 60.467 50.000 0.00 0.00 42.05 2.43
315 402 2.631428 CGGCCCGCGTTCATATTG 59.369 61.111 4.92 0.00 0.00 1.90
959 1163 2.103934 CGGCGCAGAGGAGAGAAG 59.896 66.667 10.83 0.00 0.00 2.85
960 1164 4.135153 GCGGCGCAGAGGAGAGAA 62.135 66.667 29.21 0.00 0.00 2.87
965 1169 2.819595 GATTTGCGGCGCAGAGGA 60.820 61.111 34.19 21.19 40.61 3.71
970 1174 4.713735 TGGAGGATTTGCGGCGCA 62.714 61.111 33.07 33.07 36.47 6.09
971 1175 3.880846 CTGGAGGATTTGCGGCGC 61.881 66.667 27.44 27.44 0.00 6.53
975 1179 2.482326 GGAACCTGGAGGATTTGCG 58.518 57.895 0.00 0.00 38.94 4.85
1011 1215 1.508088 CAAAATCACCCTGCCGAGC 59.492 57.895 0.00 0.00 0.00 5.03
1084 1288 4.447342 AATCCTGCTTGGGGCCGG 62.447 66.667 0.00 0.00 45.08 6.13
1127 1331 1.884464 CGCCATGGTCACATCGGAG 60.884 63.158 14.67 0.00 34.35 4.63
1214 1418 0.249447 CATCTGGCGCACCTCGAATA 60.249 55.000 10.83 0.00 41.67 1.75
1215 1419 1.522355 CATCTGGCGCACCTCGAAT 60.522 57.895 10.83 0.00 41.67 3.34
1216 1420 2.125552 CATCTGGCGCACCTCGAA 60.126 61.111 10.83 0.00 41.67 3.71
1240 1462 3.267860 CCGCATCTGCCTCTTCGC 61.268 66.667 0.00 0.00 37.91 4.70
1241 1463 3.267860 GCCGCATCTGCCTCTTCG 61.268 66.667 0.00 0.00 37.91 3.79
1308 1536 1.902508 ACCATCGACACATCCTTCTGT 59.097 47.619 0.00 0.00 0.00 3.41
1361 1589 4.099170 GCCTTGCTGTCGCTGCTG 62.099 66.667 0.00 0.00 36.97 4.41
1423 1651 0.403271 AGAAGCACCAGCAACATCCT 59.597 50.000 0.00 0.00 45.49 3.24
1424 1652 0.524862 CAGAAGCACCAGCAACATCC 59.475 55.000 0.00 0.00 45.49 3.51
1520 1748 0.390340 TCAACGCTGCAGGCTAGAAG 60.390 55.000 17.12 0.00 39.13 2.85
1569 1797 4.405680 ACATGATATTCTCCGAGTTCACCA 59.594 41.667 0.00 0.00 0.00 4.17
1611 1842 4.516698 CCATTATCCTGTCCTTCATTTCCG 59.483 45.833 0.00 0.00 0.00 4.30
1702 1933 4.809007 GCCTTCTTTGTCAAGAGGAGGAAT 60.809 45.833 18.89 0.00 38.57 3.01
1716 1947 3.431572 CAGAGACTCGAAAGCCTTCTTTG 59.568 47.826 0.00 0.00 42.24 2.77
1734 1965 4.223923 ACTTTACCCCAGACAAGATCAGAG 59.776 45.833 0.00 0.00 0.00 3.35
1779 2010 3.119291 CGAAGGATCAAAGATCTCACCG 58.881 50.000 0.00 3.22 0.00 4.94
1800 2031 1.319541 ATGCCAGCTCAGATGCATTC 58.680 50.000 0.00 0.00 41.40 2.67
1832 2063 5.643379 TGCAACCAAATGACTATCCTTTC 57.357 39.130 0.00 0.00 0.00 2.62
1878 2109 1.375396 CTGGGATTCGTCGCACCAA 60.375 57.895 0.00 0.00 0.00 3.67
2161 2392 2.362717 GGAACAGAGCTAGCGACCTAAT 59.637 50.000 9.55 0.83 0.00 1.73
2220 2451 8.802856 CGATAGAAAGATGTAAGTTGAGAACAG 58.197 37.037 0.00 0.00 39.76 3.16
2310 2541 5.090139 ACATCCTCGATGGGAGAAATATCT 58.910 41.667 6.58 0.00 46.23 1.98
2315 2546 3.384789 CACTACATCCTCGATGGGAGAAA 59.615 47.826 6.58 0.00 46.23 2.52
2709 2940 0.793250 GTCTCCTCTTTGCGCACTTC 59.207 55.000 11.12 0.00 0.00 3.01
2957 3188 5.011431 CAGTAGGAGTCCTGCATATGATCAA 59.989 44.000 26.79 0.00 38.73 2.57
3281 3512 7.701445 ACCGAATTTCTTGATCAGATCATTTC 58.299 34.615 14.11 10.74 39.39 2.17
3284 3515 5.464722 CGACCGAATTTCTTGATCAGATCAT 59.535 40.000 14.11 0.00 39.39 2.45
3407 3638 1.221840 CCATACTTCCCAGCAGCGT 59.778 57.895 0.00 0.00 0.00 5.07
3577 3808 7.700234 TGCAACATTGTTTTAGTTGTGAACTAG 59.300 33.333 0.00 0.00 44.22 2.57
3578 3809 7.539436 TGCAACATTGTTTTAGTTGTGAACTA 58.461 30.769 0.00 0.00 43.31 2.24
3579 3810 6.393990 TGCAACATTGTTTTAGTTGTGAACT 58.606 32.000 0.00 0.00 43.31 3.01
3753 3984 1.214589 CAGGTTCAGCTTGGCATGC 59.785 57.895 16.84 16.84 0.00 4.06
3948 4179 5.510179 CCAGCTTCACATCACAAGGAATTTT 60.510 40.000 0.00 0.00 0.00 1.82
4108 4339 1.267121 TAGGTCTTGAGCAGTGTCCC 58.733 55.000 2.64 0.00 0.00 4.46
4398 4629 0.712380 ATTTCATCCCCTGGTGCCTT 59.288 50.000 0.00 0.00 0.00 4.35
4409 4640 4.681512 GCATCCCTGTTTTCCATTTCATCC 60.682 45.833 0.00 0.00 0.00 3.51
4433 4664 2.350895 CCACCCGGTGATTCAGCA 59.649 61.111 19.81 0.00 35.23 4.41
4444 4675 4.344865 CACCAACCTCCCCACCCG 62.345 72.222 0.00 0.00 0.00 5.28
4529 4760 1.157870 CGGCAGTCGTTTCACCTTGT 61.158 55.000 0.00 0.00 0.00 3.16
4714 4945 4.812476 CATCCCGCGCTTCGACCA 62.812 66.667 5.56 0.00 41.67 4.02
4965 5196 2.574399 GGTCAGACAGACTCCCGC 59.426 66.667 2.17 0.00 46.72 6.13
4994 5225 2.822764 CCTTAGCTAACCTAACAGCGG 58.177 52.381 0.86 0.00 42.74 5.52
5016 5247 6.889722 GTGAAAGGGCCCAAATATATGCTATA 59.110 38.462 27.56 0.00 0.00 1.31
5017 5248 5.716703 GTGAAAGGGCCCAAATATATGCTAT 59.283 40.000 27.56 0.00 0.00 2.97
5032 5263 3.696051 TGATGAAGCTTATGTGAAAGGGC 59.304 43.478 0.00 0.00 0.00 5.19
5049 5280 6.329986 ACACCAATACCCTAGATGATTGATGA 59.670 38.462 10.21 0.00 32.16 2.92
5248 5479 6.978080 ACACAACCAGTTTACAAATGACAATC 59.022 34.615 0.00 0.00 0.00 2.67
5401 5633 1.485895 ACCAAAAGCACAGCAAACCAT 59.514 42.857 0.00 0.00 0.00 3.55
5478 5710 9.015577 CGTCTTGTCTCTTATTTTCTGATCTAC 57.984 37.037 0.00 0.00 0.00 2.59
5534 5766 7.495901 TCATGAAGAAGTCCAGTCATAGATTC 58.504 38.462 0.00 0.00 0.00 2.52
5543 5775 4.330250 CCACAATCATGAAGAAGTCCAGT 58.670 43.478 0.00 0.00 0.00 4.00
5553 5785 2.905085 ACCAATTGGCCACAATCATGAA 59.095 40.909 24.79 0.00 46.25 2.57
5554 5786 2.496871 GACCAATTGGCCACAATCATGA 59.503 45.455 24.79 0.00 46.25 3.07
5555 5787 2.234168 TGACCAATTGGCCACAATCATG 59.766 45.455 24.79 0.00 46.25 3.07
5556 5788 2.498481 CTGACCAATTGGCCACAATCAT 59.502 45.455 24.79 0.76 46.25 2.45
5611 5896 6.874278 TCTATGAATCAAAGAGGTCCTTCA 57.126 37.500 0.00 0.00 33.02 3.02
5705 5992 3.132925 GTTGTAACTGGTTTCGCTACCA 58.867 45.455 8.00 8.00 45.73 3.25
5709 5996 2.031157 GCATGTTGTAACTGGTTTCGCT 60.031 45.455 0.00 0.00 0.00 4.93
5717 6004 3.249799 TGTTTCGAGGCATGTTGTAACTG 59.750 43.478 0.00 0.00 0.00 3.16
5718 6005 3.250040 GTGTTTCGAGGCATGTTGTAACT 59.750 43.478 0.00 0.00 0.00 2.24
5734 6021 1.866601 GCCAATTGTGCCTTGTGTTTC 59.133 47.619 4.43 0.00 0.00 2.78
5759 6046 1.240256 CGGATTTCACCCGGTTTTCA 58.760 50.000 0.00 0.00 43.05 2.69
5766 6053 1.081094 GGTGTAACGGATTTCACCCG 58.919 55.000 4.89 0.00 45.79 5.28
5800 6099 1.452108 GCATGTGGGTAGACAGGCC 60.452 63.158 0.00 0.00 45.64 5.19
5801 6100 4.225497 GCATGTGGGTAGACAGGC 57.775 61.111 0.00 0.00 45.32 4.85
5802 6101 0.615331 AGTGCATGTGGGTAGACAGG 59.385 55.000 0.00 0.00 0.00 4.00
5805 6104 2.361119 TCGATAGTGCATGTGGGTAGAC 59.639 50.000 0.00 0.00 37.40 2.59
5806 6105 2.623416 CTCGATAGTGCATGTGGGTAGA 59.377 50.000 0.00 0.00 37.40 2.59
5807 6106 2.623416 TCTCGATAGTGCATGTGGGTAG 59.377 50.000 0.00 0.00 37.40 3.18
5811 6110 1.683385 TCCTCTCGATAGTGCATGTGG 59.317 52.381 0.00 0.00 37.40 4.17
5812 6111 3.379240 CTTCCTCTCGATAGTGCATGTG 58.621 50.000 0.00 0.00 37.40 3.21
5813 6112 2.363680 CCTTCCTCTCGATAGTGCATGT 59.636 50.000 0.00 0.00 37.40 3.21
5814 6113 2.865670 GCCTTCCTCTCGATAGTGCATG 60.866 54.545 0.00 0.00 37.40 4.06
5815 6114 1.342819 GCCTTCCTCTCGATAGTGCAT 59.657 52.381 0.00 0.00 37.40 3.96
5816 6115 0.747255 GCCTTCCTCTCGATAGTGCA 59.253 55.000 0.00 0.00 37.40 4.57
5817 6116 0.032815 GGCCTTCCTCTCGATAGTGC 59.967 60.000 0.00 0.00 37.40 4.40
5818 6117 1.067821 GTGGCCTTCCTCTCGATAGTG 59.932 57.143 3.32 0.00 37.40 2.74
5824 6123 3.358076 GACGGTGGCCTTCCTCTCG 62.358 68.421 3.32 0.00 0.00 4.04
5839 6138 2.355363 TTGCGGACAACCTCGACG 60.355 61.111 0.00 0.00 0.00 5.12
5852 6151 3.249091 AGCGATGAATATAGCTCTTGCG 58.751 45.455 0.00 0.00 40.65 4.85
5860 6159 6.483307 TGGTCAGGAAAAAGCGATGAATATAG 59.517 38.462 0.00 0.00 0.00 1.31
5871 6170 3.616821 GTGTTGTTTGGTCAGGAAAAAGC 59.383 43.478 0.00 0.00 0.00 3.51
5875 6174 1.746220 CGGTGTTGTTTGGTCAGGAAA 59.254 47.619 0.00 0.00 0.00 3.13
5912 6211 3.357079 CTGGTGGCTCGTTGGTGC 61.357 66.667 0.00 0.00 0.00 5.01
5927 6226 1.098050 GCTATTTCAGTGGCCACCTG 58.902 55.000 32.29 26.35 0.00 4.00
5932 6231 1.387295 GGGCAGCTATTTCAGTGGCC 61.387 60.000 0.00 0.00 41.91 5.36
5978 6277 0.467290 ATTTGTGAGTGTGGCCGGTT 60.467 50.000 1.90 0.00 0.00 4.44
5995 6294 2.930950 TCGCTAAATTGGGCAGCTATT 58.069 42.857 0.00 0.00 33.03 1.73
5996 6295 2.638480 TCGCTAAATTGGGCAGCTAT 57.362 45.000 0.00 0.00 33.03 2.97
5997 6296 2.288666 CTTCGCTAAATTGGGCAGCTA 58.711 47.619 0.00 0.00 33.03 3.32
5998 6297 1.098050 CTTCGCTAAATTGGGCAGCT 58.902 50.000 0.00 0.00 33.03 4.24
5999 6298 0.811281 ACTTCGCTAAATTGGGCAGC 59.189 50.000 4.24 0.00 0.00 5.25
6000 6299 2.476185 CGAACTTCGCTAAATTGGGCAG 60.476 50.000 0.00 0.00 31.14 4.85
6001 6300 1.466950 CGAACTTCGCTAAATTGGGCA 59.533 47.619 0.00 0.00 31.14 5.36
6002 6301 2.174060 CGAACTTCGCTAAATTGGGC 57.826 50.000 0.00 0.00 31.14 5.36
6013 6312 3.788797 GCCCAATGATAAAGCGAACTTCG 60.789 47.826 6.82 6.82 43.89 3.79
6014 6313 3.489229 GGCCCAATGATAAAGCGAACTTC 60.489 47.826 0.00 0.00 34.05 3.01
6015 6314 2.427095 GGCCCAATGATAAAGCGAACTT 59.573 45.455 0.00 0.00 37.90 2.66
6016 6315 2.024414 GGCCCAATGATAAAGCGAACT 58.976 47.619 0.00 0.00 0.00 3.01
6017 6316 2.024414 AGGCCCAATGATAAAGCGAAC 58.976 47.619 0.00 0.00 0.00 3.95
6018 6317 2.023673 CAGGCCCAATGATAAAGCGAA 58.976 47.619 0.00 0.00 0.00 4.70
6019 6318 1.679139 CAGGCCCAATGATAAAGCGA 58.321 50.000 0.00 0.00 0.00 4.93
6020 6319 0.670162 CCAGGCCCAATGATAAAGCG 59.330 55.000 0.00 0.00 0.00 4.68
6021 6320 0.390492 GCCAGGCCCAATGATAAAGC 59.610 55.000 0.00 0.00 0.00 3.51
6022 6321 1.043022 GGCCAGGCCCAATGATAAAG 58.957 55.000 21.62 0.00 44.06 1.85
6023 6322 3.222287 GGCCAGGCCCAATGATAAA 57.778 52.632 21.62 0.00 44.06 1.40
6037 6336 3.483788 TAACCAAGCACAGCGGCCA 62.484 57.895 2.24 0.00 0.00 5.36
6038 6337 2.671619 TAACCAAGCACAGCGGCC 60.672 61.111 0.00 0.00 0.00 6.13
6039 6338 2.690778 CCTAACCAAGCACAGCGGC 61.691 63.158 0.00 0.00 0.00 6.53
6040 6339 1.003839 TCCTAACCAAGCACAGCGG 60.004 57.895 0.00 0.00 0.00 5.52
6041 6340 0.602638 TGTCCTAACCAAGCACAGCG 60.603 55.000 0.00 0.00 0.00 5.18
6042 6341 1.160137 CTGTCCTAACCAAGCACAGC 58.840 55.000 0.00 0.00 0.00 4.40
6043 6342 1.160137 GCTGTCCTAACCAAGCACAG 58.840 55.000 0.00 0.00 38.01 3.66
6044 6343 0.250727 GGCTGTCCTAACCAAGCACA 60.251 55.000 0.00 0.00 0.00 4.57
6045 6344 0.250727 TGGCTGTCCTAACCAAGCAC 60.251 55.000 0.00 0.00 0.00 4.40
6046 6345 0.250727 GTGGCTGTCCTAACCAAGCA 60.251 55.000 0.00 0.00 34.63 3.91
6047 6346 0.250727 TGTGGCTGTCCTAACCAAGC 60.251 55.000 0.00 0.00 34.63 4.01
6048 6347 2.086869 CATGTGGCTGTCCTAACCAAG 58.913 52.381 0.00 0.00 34.63 3.61
6049 6348 1.271871 CCATGTGGCTGTCCTAACCAA 60.272 52.381 0.00 0.00 34.63 3.67
6050 6349 0.327924 CCATGTGGCTGTCCTAACCA 59.672 55.000 0.00 0.00 0.00 3.67
6051 6350 0.328258 ACCATGTGGCTGTCCTAACC 59.672 55.000 0.00 0.00 39.32 2.85
6052 6351 1.279271 AGACCATGTGGCTGTCCTAAC 59.721 52.381 0.00 0.00 39.32 2.34
6053 6352 1.656587 AGACCATGTGGCTGTCCTAA 58.343 50.000 0.00 0.00 39.32 2.69
6054 6353 1.555075 GAAGACCATGTGGCTGTCCTA 59.445 52.381 0.00 0.00 39.32 2.94
6055 6354 0.326264 GAAGACCATGTGGCTGTCCT 59.674 55.000 0.00 0.00 39.32 3.85
6056 6355 0.678048 GGAAGACCATGTGGCTGTCC 60.678 60.000 0.00 0.00 39.32 4.02
6057 6356 1.021390 CGGAAGACCATGTGGCTGTC 61.021 60.000 0.00 0.00 39.32 3.51
6058 6357 1.003355 CGGAAGACCATGTGGCTGT 60.003 57.895 0.00 0.00 39.32 4.40
6059 6358 0.606401 AACGGAAGACCATGTGGCTG 60.606 55.000 0.00 0.00 39.32 4.85
6060 6359 0.321653 GAACGGAAGACCATGTGGCT 60.322 55.000 0.00 0.00 39.32 4.75
6061 6360 1.635663 CGAACGGAAGACCATGTGGC 61.636 60.000 0.00 0.00 39.32 5.01
6062 6361 0.320421 ACGAACGGAAGACCATGTGG 60.320 55.000 0.00 0.00 42.17 4.17
6063 6362 1.068474 GACGAACGGAAGACCATGTG 58.932 55.000 0.00 0.00 35.59 3.21
6064 6363 0.966920 AGACGAACGGAAGACCATGT 59.033 50.000 0.00 0.00 35.59 3.21
6065 6364 1.202582 AGAGACGAACGGAAGACCATG 59.797 52.381 0.00 0.00 35.59 3.66
6066 6365 1.202582 CAGAGACGAACGGAAGACCAT 59.797 52.381 0.00 0.00 35.59 3.55
6067 6366 0.596577 CAGAGACGAACGGAAGACCA 59.403 55.000 0.00 0.00 35.59 4.02
6068 6367 0.733223 GCAGAGACGAACGGAAGACC 60.733 60.000 0.00 0.00 0.00 3.85
6069 6368 0.733223 GGCAGAGACGAACGGAAGAC 60.733 60.000 0.00 0.00 0.00 3.01
6070 6369 1.176619 TGGCAGAGACGAACGGAAGA 61.177 55.000 0.00 0.00 0.00 2.87
6071 6370 1.009389 GTGGCAGAGACGAACGGAAG 61.009 60.000 0.00 0.00 0.00 3.46
6072 6371 1.006571 GTGGCAGAGACGAACGGAA 60.007 57.895 0.00 0.00 0.00 4.30
6073 6372 1.740332 TTGTGGCAGAGACGAACGGA 61.740 55.000 0.00 0.00 0.00 4.69
6074 6373 0.670546 ATTGTGGCAGAGACGAACGG 60.671 55.000 0.00 0.00 0.00 4.44
6075 6374 0.439985 CATTGTGGCAGAGACGAACG 59.560 55.000 0.00 0.00 0.00 3.95
6076 6375 0.798776 CCATTGTGGCAGAGACGAAC 59.201 55.000 0.00 0.00 0.00 3.95
6077 6376 0.396435 ACCATTGTGGCAGAGACGAA 59.604 50.000 0.00 0.00 42.67 3.85
6078 6377 0.320683 CACCATTGTGGCAGAGACGA 60.321 55.000 0.00 0.00 42.67 4.20
6079 6378 2.165380 CACCATTGTGGCAGAGACG 58.835 57.895 0.00 0.00 42.67 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.