Multiple sequence alignment - TraesCS1A01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G283600 chr1A 100.000 5408 0 0 1 5408 481288167 481293574 0.000000e+00 9987.0
1 TraesCS1A01G283600 chr1A 85.567 97 12 2 3946 4041 96488602 96488507 3.450000e-17 100.0
2 TraesCS1A01G283600 chr1B 89.587 3025 197 51 464 3442 510598319 510601271 0.000000e+00 3733.0
3 TraesCS1A01G283600 chr1B 89.383 1394 100 15 4037 5408 510601820 510603187 0.000000e+00 1711.0
4 TraesCS1A01G283600 chr1B 95.248 484 17 5 3439 3919 510601314 510601794 0.000000e+00 761.0
5 TraesCS1A01G283600 chr1B 87.413 286 32 2 1 282 510596410 510596695 5.220000e-85 326.0
6 TraesCS1A01G283600 chr1D 93.668 2274 101 21 1 2255 380768156 380770405 0.000000e+00 3362.0
7 TraesCS1A01G283600 chr1D 94.026 703 29 8 4003 4697 380772658 380773355 0.000000e+00 1053.0
8 TraesCS1A01G283600 chr1D 93.456 489 15 7 3468 3949 380772169 380772647 0.000000e+00 710.0
9 TraesCS1A01G283600 chr1D 84.903 669 56 21 2579 3218 380771401 380772053 7.640000e-178 634.0
10 TraesCS1A01G283600 chr1D 83.956 642 83 9 4773 5408 380777389 380778016 1.000000e-166 597.0
11 TraesCS1A01G283600 chr1D 92.749 331 22 2 2254 2582 380770482 380770812 1.360000e-130 477.0
12 TraesCS1A01G283600 chr1D 86.458 96 12 1 3946 4041 78965816 78965910 2.660000e-18 104.0
13 TraesCS1A01G283600 chr2D 86.286 350 39 5 2488 2835 625022417 625022759 6.620000e-99 372.0
14 TraesCS1A01G283600 chr2D 85.806 155 19 3 290 444 95194101 95194252 1.560000e-35 161.0
15 TraesCS1A01G283600 chr2D 87.356 87 11 0 3954 4040 29847326 29847412 3.450000e-17 100.0
16 TraesCS1A01G283600 chr7D 81.671 371 38 16 2482 2835 472384897 472385254 1.150000e-71 281.0
17 TraesCS1A01G283600 chr7D 88.235 85 9 1 3956 4040 41146563 41146646 3.450000e-17 100.0
18 TraesCS1A01G283600 chr7B 89.571 163 16 1 2652 2813 496343774 496343936 7.100000e-49 206.0
19 TraesCS1A01G283600 chr7B 88.506 87 8 2 3956 4040 725735053 725735139 2.660000e-18 104.0
20 TraesCS1A01G283600 chr4B 100.000 108 0 0 3246 3353 522533596 522533489 3.300000e-47 200.0
21 TraesCS1A01G283600 chr4B 83.851 161 20 4 290 444 440273981 440273821 1.210000e-31 148.0
22 TraesCS1A01G283600 chr2B 98.182 110 2 0 3244 3353 706703734 706703625 5.530000e-45 193.0
23 TraesCS1A01G283600 chr2B 86.458 96 11 2 3956 4051 794694273 794694180 2.660000e-18 104.0
24 TraesCS1A01G283600 chr2B 86.458 96 11 2 3956 4051 794803174 794803081 2.660000e-18 104.0
25 TraesCS1A01G283600 chr2B 87.209 86 11 0 3955 4040 677805526 677805611 1.240000e-16 99.0
26 TraesCS1A01G283600 chr2A 96.552 116 3 1 3244 3358 138184302 138184417 1.990000e-44 191.0
27 TraesCS1A01G283600 chr6A 96.429 112 4 0 3244 3355 576393253 576393142 9.250000e-43 185.0
28 TraesCS1A01G283600 chr6A 93.388 121 6 2 3238 3357 250834507 250834626 1.550000e-40 178.0
29 TraesCS1A01G283600 chr6A 87.952 83 10 0 3956 4038 16471528 16471446 1.240000e-16 99.0
30 TraesCS1A01G283600 chr7A 94.915 118 4 2 3240 3355 381253914 381254031 3.330000e-42 183.0
31 TraesCS1A01G283600 chr6B 94.828 116 6 0 3240 3355 212572022 212571907 1.200000e-41 182.0
32 TraesCS1A01G283600 chr6B 79.715 281 27 13 2548 2813 70878969 70878704 5.570000e-40 176.0
33 TraesCS1A01G283600 chr5B 94.872 117 5 1 3238 3353 515669575 515669459 1.200000e-41 182.0
34 TraesCS1A01G283600 chr3D 94.872 117 5 1 3244 3359 606889396 606889280 1.200000e-41 182.0
35 TraesCS1A01G283600 chr3D 81.313 198 18 6 4889 5081 39434526 39434709 5.650000e-30 143.0
36 TraesCS1A01G283600 chr6D 84.906 159 20 2 290 444 259285902 259286060 2.020000e-34 158.0
37 TraesCS1A01G283600 chr5D 83.626 171 24 3 283 450 481752878 481752709 2.020000e-34 158.0
38 TraesCS1A01G283600 chr5D 84.277 159 20 3 290 444 91724635 91724792 3.370000e-32 150.0
39 TraesCS1A01G283600 chr5D 90.323 62 5 1 2487 2548 249918856 249918796 4.490000e-11 80.5
40 TraesCS1A01G283600 chr4A 83.750 160 20 5 290 444 677649911 677649753 4.360000e-31 147.0
41 TraesCS1A01G283600 chr4A 88.889 63 4 2 2495 2555 516444541 516444602 2.090000e-09 75.0
42 TraesCS1A01G283600 chr4D 83.333 162 19 3 283 444 4040260 4040413 5.650000e-30 143.0
43 TraesCS1A01G283600 chr4D 84.564 149 18 2 300 444 419463176 419463029 5.650000e-30 143.0
44 TraesCS1A01G283600 chr4D 88.710 62 4 2 2496 2555 67276950 67277010 7.510000e-09 73.1
45 TraesCS1A01G283600 chr3B 80.571 175 18 4 4890 5060 144484112 144483950 2.650000e-23 121.0
46 TraesCS1A01G283600 chr3B 100.000 28 0 0 3455 3482 63532094 63532121 1.000000e-02 52.8
47 TraesCS1A01G283600 chr3A 78.947 152 13 14 2541 2687 69287662 69287525 9.650000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G283600 chr1A 481288167 481293574 5407 False 9987.00 9987 100.00000 1 5408 1 chr1A.!!$F1 5407
1 TraesCS1A01G283600 chr1B 510596410 510603187 6777 False 1632.75 3733 90.40775 1 5408 4 chr1B.!!$F1 5407
2 TraesCS1A01G283600 chr1D 380768156 380773355 5199 False 1247.20 3362 91.76040 1 4697 5 chr1D.!!$F3 4696
3 TraesCS1A01G283600 chr1D 380777389 380778016 627 False 597.00 597 83.95600 4773 5408 1 chr1D.!!$F2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.613777 GCCGAAGAGAAGGGAAGGAA 59.386 55.0 0.00 0.00 0.00 3.36 F
813 2303 0.744414 AATCCACCGTGATTCCAGCG 60.744 55.0 0.00 0.00 28.88 5.18 F
2331 3920 0.887247 TGTGGATTTTGCCATCCGTG 59.113 50.0 0.00 0.00 45.39 4.94 F
2828 5010 0.241749 CAACTTGTGCGGCATCATGT 59.758 50.0 5.72 11.33 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 3521 0.034574 TGCATTGGACGGCACCTATT 60.035 50.0 0.00 0.0 34.58 1.73 R
2339 3928 1.019278 CGGGGTGGATGACTGTTTCG 61.019 60.0 0.00 0.0 0.00 3.46 R
3406 5617 0.104304 GGAGTACATACTGCCACCCG 59.896 60.0 0.00 0.0 38.53 5.28 R
4744 7026 0.107654 GCCTTAGGACATGCCGTCTT 60.108 55.0 0.69 0.0 44.70 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.075450 GGGAGGGTAGGGACGTGAT 60.075 63.158 0.00 0.00 0.00 3.06
39 40 3.181447 ACGTGATCTCCGGGAAGAGTATA 60.181 47.826 0.00 0.00 35.28 1.47
62 63 0.613777 GCCGAAGAGAAGGGAAGGAA 59.386 55.000 0.00 0.00 0.00 3.36
92 94 3.319137 ACGACTATGTGTGTTGCATCT 57.681 42.857 0.00 0.00 0.00 2.90
308 313 2.033801 TGTTTAGGCGCTATACGGACTC 59.966 50.000 7.64 0.00 43.93 3.36
323 328 3.827302 ACGGACTCTACATGTCTCTTTGT 59.173 43.478 0.00 0.00 35.04 2.83
336 341 8.621286 ACATGTCTCTTTGTATTTCGTCTTTTT 58.379 29.630 0.00 0.00 0.00 1.94
364 370 6.271391 TGGTTTGTGAGAGAGGACCTTATTTA 59.729 38.462 0.00 0.00 0.00 1.40
368 374 5.127845 TGTGAGAGAGGACCTTATTTAGCTG 59.872 44.000 0.00 0.00 0.00 4.24
380 386 6.884295 ACCTTATTTAGCTGTGTGCATCTTAA 59.116 34.615 0.00 0.00 45.94 1.85
386 392 7.864108 TTAGCTGTGTGCATCTTAATTATGT 57.136 32.000 0.00 0.00 45.94 2.29
390 396 7.440556 AGCTGTGTGCATCTTAATTATGTAGAG 59.559 37.037 0.00 0.00 45.94 2.43
396 402 6.266786 TGCATCTTAATTATGTAGAGACCGGA 59.733 38.462 9.46 0.00 0.00 5.14
453 459 7.095271 TGCCTCTTTTTGAAAAACAGAGTTTTG 60.095 33.333 14.74 4.71 34.73 2.44
454 460 7.117667 GCCTCTTTTTGAAAAACAGAGTTTTGA 59.882 33.333 14.74 2.33 34.73 2.69
501 1991 1.471829 CCCCAAGGCAAAGAACCCAC 61.472 60.000 0.00 0.00 0.00 4.61
502 1992 0.758685 CCCAAGGCAAAGAACCCACA 60.759 55.000 0.00 0.00 0.00 4.17
657 2147 1.660607 CACGACACACACATATGGCTC 59.339 52.381 7.80 0.00 0.00 4.70
743 2233 1.203492 AGTCAAACAGGGAGGAGGGAT 60.203 52.381 0.00 0.00 0.00 3.85
744 2234 2.045885 AGTCAAACAGGGAGGAGGGATA 59.954 50.000 0.00 0.00 0.00 2.59
745 2235 2.436173 GTCAAACAGGGAGGAGGGATAG 59.564 54.545 0.00 0.00 0.00 2.08
746 2236 1.141858 CAAACAGGGAGGAGGGATAGC 59.858 57.143 0.00 0.00 0.00 2.97
765 2255 3.346631 TAGCGGTCGAAACGGGAGC 62.347 63.158 11.97 0.00 0.00 4.70
813 2303 0.744414 AATCCACCGTGATTCCAGCG 60.744 55.000 0.00 0.00 28.88 5.18
885 2375 1.404035 GCGACCCTCTCTCTTCTTCTC 59.596 57.143 0.00 0.00 0.00 2.87
906 2396 2.046507 CCAGCTCCAGTCCTGTGC 60.047 66.667 0.00 0.00 0.00 4.57
938 2428 0.992802 GTGAGTGCTACGTTGCTAGC 59.007 55.000 22.01 8.10 39.81 3.42
945 2435 2.221906 CTACGTTGCTAGCGTGGGGT 62.222 60.000 10.77 6.13 42.87 4.95
946 2436 2.495366 TACGTTGCTAGCGTGGGGTG 62.495 60.000 10.77 0.00 42.87 4.61
947 2437 2.032071 GTTGCTAGCGTGGGGTGT 59.968 61.111 10.77 0.00 0.00 4.16
948 2438 2.031919 TTGCTAGCGTGGGGTGTG 59.968 61.111 10.77 0.00 0.00 3.82
949 2439 2.512355 TTGCTAGCGTGGGGTGTGA 61.512 57.895 10.77 0.00 0.00 3.58
950 2440 2.434359 GCTAGCGTGGGGTGTGAC 60.434 66.667 0.00 0.00 0.00 3.67
951 2441 3.056458 CTAGCGTGGGGTGTGACA 58.944 61.111 0.00 0.00 0.00 3.58
952 2442 1.079819 CTAGCGTGGGGTGTGACAG 60.080 63.158 0.00 0.00 0.00 3.51
993 2494 1.227147 ACGGTGGTTCGTGTGAGTG 60.227 57.895 0.00 0.00 42.21 3.51
994 2495 1.954146 CGGTGGTTCGTGTGAGTGG 60.954 63.158 0.00 0.00 0.00 4.00
995 2496 2.251642 GGTGGTTCGTGTGAGTGGC 61.252 63.158 0.00 0.00 0.00 5.01
996 2497 1.522806 GTGGTTCGTGTGAGTGGCA 60.523 57.895 0.00 0.00 0.00 4.92
1154 2655 4.084888 GTACGTGCGCCTTGGTGC 62.085 66.667 17.34 17.34 0.00 5.01
1378 2879 1.683418 CCTCCAAGTACGTAGCCCCC 61.683 65.000 0.00 0.00 0.00 5.40
1405 2906 1.409427 GCCGTATTCTGCTCCAGTACT 59.591 52.381 0.00 0.00 32.61 2.73
1428 2929 6.531240 ACTTAGTGTCTTGTTTGCACATTTTG 59.469 34.615 0.00 0.00 35.75 2.44
1449 2950 4.527944 TGTTTACAAACATCTGGTCACCA 58.472 39.130 0.00 0.00 43.45 4.17
1459 2960 3.081710 TCTGGTCACCACGAGAAGATA 57.918 47.619 0.00 0.00 34.66 1.98
1460 2961 3.632333 TCTGGTCACCACGAGAAGATAT 58.368 45.455 0.00 0.00 34.66 1.63
1468 2969 2.695666 CCACGAGAAGATATCCACTGGT 59.304 50.000 0.00 4.10 0.00 4.00
1470 2971 4.115516 CACGAGAAGATATCCACTGGTTG 58.884 47.826 10.17 5.18 0.00 3.77
1498 2999 4.761235 ATCAACAGTTTCACATCAGCAG 57.239 40.909 0.00 0.00 0.00 4.24
1544 3045 3.708195 GCTGATTGCACGCAGAAAT 57.292 47.368 16.85 0.00 42.31 2.17
1570 3071 2.099141 TGCACCTCTCACAAGCATAC 57.901 50.000 0.00 0.00 0.00 2.39
1604 3106 4.451629 TTTTGGCCTTTCAAACGTGTAA 57.548 36.364 3.32 0.00 36.49 2.41
1615 3117 6.503616 TTCAAACGTGTAATGCATTTGAAC 57.496 33.333 18.75 10.53 39.33 3.18
1716 3219 9.199982 TGCATTTACTCGGTAATTAATAGTAGC 57.800 33.333 0.00 0.00 0.00 3.58
1761 3264 6.231211 ACGGTGAAGTCAAAACTGAAGATAT 58.769 36.000 0.00 0.00 35.36 1.63
1872 3379 1.065926 TCCAGATTGCAGCACAGTAGG 60.066 52.381 0.00 0.00 0.00 3.18
1927 3434 5.419542 GTCCAGATTACAGCACAGTTGATA 58.580 41.667 0.00 0.00 0.00 2.15
2014 3521 8.978472 AGATTAGTACTAATTAGCTTGTGGACA 58.022 33.333 25.25 0.00 36.02 4.02
2024 3531 1.086696 CTTGTGGACAATAGGTGCCG 58.913 55.000 0.00 0.00 36.96 5.69
2041 3548 1.656652 CCGTCCAATGCAGGTTAGAG 58.343 55.000 0.00 0.00 0.00 2.43
2078 3585 7.701445 TGCCAACAAATTTAATTTTGGTCAAG 58.299 30.769 20.93 10.68 40.20 3.02
2331 3920 0.887247 TGTGGATTTTGCCATCCGTG 59.113 50.000 0.00 0.00 45.39 4.94
2370 3959 5.180680 GTCATCCACCCCGCTTTATATTAAC 59.819 44.000 0.00 0.00 0.00 2.01
2380 3969 6.430000 CCCGCTTTATATTAACAAGGCTACAT 59.570 38.462 0.00 0.00 0.00 2.29
2403 3993 4.640201 TGGCAAATCATACAAAGTAGGAGC 59.360 41.667 0.00 0.00 0.00 4.70
2442 4032 7.362662 TCAAGAGCTCATCAACAAAAATACAC 58.637 34.615 17.77 0.00 0.00 2.90
2443 4033 7.229306 TCAAGAGCTCATCAACAAAAATACACT 59.771 33.333 17.77 0.00 0.00 3.55
2446 4036 6.831769 AGCTCATCAACAAAAATACACTACG 58.168 36.000 0.00 0.00 0.00 3.51
2447 4037 6.426937 AGCTCATCAACAAAAATACACTACGT 59.573 34.615 0.00 0.00 0.00 3.57
2451 4041 4.575236 TCAACAAAAATACACTACGTGGCA 59.425 37.500 0.00 0.00 37.94 4.92
2480 4070 2.170817 GGAAGGGGATGTAGGTGAGAAC 59.829 54.545 0.00 0.00 0.00 3.01
2486 4076 4.100498 GGGGATGTAGGTGAGAACGAATTA 59.900 45.833 0.00 0.00 0.00 1.40
2513 4103 4.338379 ACCTAAATAGTTGATCTCCGCC 57.662 45.455 0.00 0.00 0.00 6.13
2531 4121 3.127030 CCGCCAACTCCAATTCTCTTAAC 59.873 47.826 0.00 0.00 0.00 2.01
2582 4172 7.230712 CCTAAATAATTGATCCCCACCACTAAC 59.769 40.741 0.00 0.00 0.00 2.34
2583 4173 3.382083 AATTGATCCCCACCACTAACC 57.618 47.619 0.00 0.00 0.00 2.85
2594 4776 4.398319 CCACCACTAACCACAATTCTCTT 58.602 43.478 0.00 0.00 0.00 2.85
2595 4777 5.514136 CCCACCACTAACCACAATTCTCTTA 60.514 44.000 0.00 0.00 0.00 2.10
2596 4778 5.643777 CCACCACTAACCACAATTCTCTTAG 59.356 44.000 0.00 0.00 0.00 2.18
2630 4812 0.309922 GCCATCTCATCATGCCAACG 59.690 55.000 0.00 0.00 0.00 4.10
2649 4831 2.086869 CGTGCATCAGAAAAGACCCAT 58.913 47.619 0.00 0.00 0.00 4.00
2660 4842 7.781056 TCAGAAAAGACCCATATTAAAATGCC 58.219 34.615 0.00 0.00 0.00 4.40
2717 4899 8.685427 TCCACAACTATGGAATATTCAAATGTG 58.315 33.333 17.07 18.15 46.08 3.21
2812 4994 3.502191 TCAATAAATTCCGGCAGCAAC 57.498 42.857 0.00 0.00 0.00 4.17
2813 4995 3.088532 TCAATAAATTCCGGCAGCAACT 58.911 40.909 0.00 0.00 0.00 3.16
2814 4996 3.509575 TCAATAAATTCCGGCAGCAACTT 59.490 39.130 0.00 0.00 0.00 2.66
2825 5007 2.644418 GCAACTTGTGCGGCATCA 59.356 55.556 5.72 3.40 45.10 3.07
2826 5008 1.213537 GCAACTTGTGCGGCATCAT 59.786 52.632 5.72 0.00 45.10 2.45
2827 5009 1.074319 GCAACTTGTGCGGCATCATG 61.074 55.000 5.72 10.73 45.10 3.07
2828 5010 0.241749 CAACTTGTGCGGCATCATGT 59.758 50.000 5.72 11.33 0.00 3.21
2829 5011 0.523072 AACTTGTGCGGCATCATGTC 59.477 50.000 5.72 0.00 0.00 3.06
2830 5012 1.308069 ACTTGTGCGGCATCATGTCC 61.308 55.000 5.72 0.00 0.00 4.02
2855 5037 8.999431 CCAGTTAATAGTAGTGTGTGTGATTTT 58.001 33.333 0.00 0.00 0.00 1.82
2914 5096 6.515696 CGATATCTCAGGTTGCATTAGTCTCA 60.516 42.308 0.34 0.00 0.00 3.27
2957 5152 6.566942 GCACAACACCATAACGATAACTGAAA 60.567 38.462 0.00 0.00 0.00 2.69
2998 5193 4.830826 ACTTCGTTTGATTTCTTCCCAC 57.169 40.909 0.00 0.00 0.00 4.61
3018 5213 5.280521 CCCACCTCTTTGTATCTTGTAGGTT 60.281 44.000 0.00 0.00 33.67 3.50
3044 5239 5.015108 CGCAAACAAAGTTTTCTTTTCTGC 58.985 37.500 0.00 0.00 46.55 4.26
3045 5240 5.163963 CGCAAACAAAGTTTTCTTTTCTGCT 60.164 36.000 12.30 0.00 46.55 4.24
3053 5248 8.659491 CAAAGTTTTCTTTTCTGCTTAGCTTTT 58.341 29.630 5.60 0.00 46.55 2.27
3054 5249 7.993821 AGTTTTCTTTTCTGCTTAGCTTTTC 57.006 32.000 5.60 0.00 0.00 2.29
3061 5270 9.236006 TCTTTTCTGCTTAGCTTTTCTTCATAT 57.764 29.630 5.60 0.00 0.00 1.78
3063 5272 6.369059 TCTGCTTAGCTTTTCTTCATATGC 57.631 37.500 5.60 0.00 0.00 3.14
3086 5295 7.378966 TGCTTAGATTATTTCGTATAGCTGCT 58.621 34.615 7.57 7.57 0.00 4.24
3108 5317 2.159572 CGGTTAAAATCCCACGCTTGAG 60.160 50.000 0.00 0.00 0.00 3.02
3142 5351 8.150945 AGCACCGACATAAATATCAATTACTCT 58.849 33.333 0.00 0.00 0.00 3.24
3200 5410 6.913873 AAAGCGAGTAGTTTTGAAGTACAA 57.086 33.333 0.00 0.00 39.30 2.41
3201 5411 5.902051 AGCGAGTAGTTTTGAAGTACAAC 57.098 39.130 0.00 0.00 39.30 3.32
3209 5419 9.617975 AGTAGTTTTGAAGTACAACGACTATAC 57.382 33.333 6.90 0.00 38.46 1.47
3210 5420 9.617975 GTAGTTTTGAAGTACAACGACTATACT 57.382 33.333 0.00 0.00 38.46 2.12
3212 5422 8.355169 AGTTTTGAAGTACAACGACTATACTCA 58.645 33.333 0.00 0.00 38.29 3.41
3213 5423 8.636843 GTTTTGAAGTACAACGACTATACTCAG 58.363 37.037 0.00 0.00 38.29 3.35
3214 5424 7.444629 TTGAAGTACAACGACTATACTCAGT 57.555 36.000 0.00 0.00 33.18 3.41
3215 5425 8.552083 TTGAAGTACAACGACTATACTCAGTA 57.448 34.615 0.00 0.00 33.18 2.74
3216 5426 7.968246 TGAAGTACAACGACTATACTCAGTAC 58.032 38.462 0.00 0.00 0.00 2.73
3217 5427 7.603784 TGAAGTACAACGACTATACTCAGTACA 59.396 37.037 0.00 0.00 34.58 2.90
3219 5429 7.746929 AGTACAACGACTATACTCAGTACAAC 58.253 38.462 0.00 0.00 34.58 3.32
3220 5430 6.814506 ACAACGACTATACTCAGTACAACT 57.185 37.500 0.00 0.00 0.00 3.16
3221 5431 6.840075 ACAACGACTATACTCAGTACAACTC 58.160 40.000 0.00 0.00 0.00 3.01
3222 5432 6.128063 ACAACGACTATACTCAGTACAACTCC 60.128 42.308 0.00 0.00 0.00 3.85
3233 5444 4.402793 TCAGTACAACTCCTAGCTGATTCC 59.597 45.833 0.00 0.00 0.00 3.01
3234 5445 4.160439 CAGTACAACTCCTAGCTGATTCCA 59.840 45.833 0.00 0.00 0.00 3.53
3258 5469 2.694109 GCTACAATCTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
3262 5473 2.500098 CAATCTACTCCCTCCGTTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
3264 5475 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
3266 5477 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
3267 5478 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3268 5479 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3269 5480 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3271 5482 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3273 5484 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
3274 5485 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
3275 5486 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
3276 5487 3.479006 CGTTCCAAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 32.65 5.18
3277 5488 3.185594 CGTTCCAAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 32.65 4.26
3278 5489 4.319190 CGTTCCAAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
3279 5490 5.516090 GTTCCAAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
3280 5491 5.957842 TCCAAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
3281 5492 5.698832 TCCAAATTACTTGTCGCAGAAATG 58.301 37.500 0.00 0.00 39.69 2.32
3282 5493 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
3284 5495 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
3285 5496 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3286 5497 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3287 5498 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3289 5500 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3293 5504 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3294 5505 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
3325 5536 9.658799 AATACATCTAGATACAACCATACATGC 57.341 33.333 4.54 0.00 0.00 4.06
3326 5537 6.159293 ACATCTAGATACAACCATACATGCG 58.841 40.000 4.54 0.00 0.00 4.73
3327 5538 6.015434 ACATCTAGATACAACCATACATGCGA 60.015 38.462 4.54 0.00 0.00 5.10
3328 5539 5.769367 TCTAGATACAACCATACATGCGAC 58.231 41.667 0.00 0.00 0.00 5.19
3329 5540 4.400529 AGATACAACCATACATGCGACA 57.599 40.909 0.00 0.00 0.00 4.35
3330 5541 4.765273 AGATACAACCATACATGCGACAA 58.235 39.130 0.00 0.00 0.00 3.18
3331 5542 4.811024 AGATACAACCATACATGCGACAAG 59.189 41.667 0.00 0.00 0.00 3.16
3332 5543 2.778299 ACAACCATACATGCGACAAGT 58.222 42.857 0.00 0.00 0.00 3.16
3333 5544 3.932822 ACAACCATACATGCGACAAGTA 58.067 40.909 0.00 0.00 0.00 2.24
3334 5545 4.320023 ACAACCATACATGCGACAAGTAA 58.680 39.130 0.00 0.00 0.00 2.24
3336 5547 5.414454 ACAACCATACATGCGACAAGTAATT 59.586 36.000 0.00 0.00 0.00 1.40
3337 5548 5.734855 ACCATACATGCGACAAGTAATTC 57.265 39.130 0.00 0.00 0.00 2.17
3340 5551 2.967362 ACATGCGACAAGTAATTCGGA 58.033 42.857 0.00 0.00 40.02 4.55
3342 5553 3.124636 ACATGCGACAAGTAATTCGGAAC 59.875 43.478 0.00 0.00 39.13 3.62
3362 5573 1.685491 CGGAGGGAGTAGTGCCTAAGT 60.685 57.143 11.12 0.00 46.59 2.24
3364 5575 2.838813 GGAGGGAGTAGTGCCTAAGTTT 59.161 50.000 11.12 0.00 46.59 2.66
3413 5624 0.529119 CTATACCAACGACGGGTGGC 60.529 60.000 17.10 0.00 39.48 5.01
3428 5639 1.838077 GGTGGCAGTATGTACTCCCTT 59.162 52.381 2.08 0.00 35.13 3.95
3513 5775 6.832520 TGTGTACGTACAGAAATTACCCTA 57.167 37.500 28.02 0.00 36.78 3.53
3518 5780 8.313292 TGTACGTACAGAAATTACCCTAAATGT 58.687 33.333 24.10 0.00 0.00 2.71
3563 5825 3.961414 GGGAGCCCCGTGGACAAA 61.961 66.667 0.00 0.00 32.13 2.83
3863 6128 2.945008 ACATGCCACATACATCTTTCCG 59.055 45.455 0.00 0.00 0.00 4.30
3928 6198 8.306761 TGACGTGATGCATACATAGAAGAATAT 58.693 33.333 0.00 0.00 36.35 1.28
3945 6215 7.984050 AGAAGAATATCGTATATGGATTGGCAG 59.016 37.037 0.00 0.00 0.00 4.85
3946 6216 6.586344 AGAATATCGTATATGGATTGGCAGG 58.414 40.000 0.00 0.00 0.00 4.85
3947 6217 5.957771 ATATCGTATATGGATTGGCAGGT 57.042 39.130 0.00 0.00 0.00 4.00
3948 6218 7.344612 AGAATATCGTATATGGATTGGCAGGTA 59.655 37.037 0.00 0.00 0.00 3.08
3949 6219 4.801330 TCGTATATGGATTGGCAGGTAG 57.199 45.455 0.00 0.00 0.00 3.18
3950 6220 3.513912 TCGTATATGGATTGGCAGGTAGG 59.486 47.826 0.00 0.00 0.00 3.18
3951 6221 2.887151 ATATGGATTGGCAGGTAGGC 57.113 50.000 0.00 0.00 44.50 3.93
3968 6238 2.424733 GCAGGTACTCCCTCCGTCC 61.425 68.421 0.00 0.00 43.86 4.79
3969 6239 1.000019 CAGGTACTCCCTCCGTCCA 60.000 63.158 0.00 0.00 43.86 4.02
3975 6245 4.140853 AGGTACTCCCTCCGTCCAATAATA 60.141 45.833 0.00 0.00 40.71 0.98
3976 6246 4.776308 GGTACTCCCTCCGTCCAATAATAT 59.224 45.833 0.00 0.00 0.00 1.28
3977 6247 5.954150 GGTACTCCCTCCGTCCAATAATATA 59.046 44.000 0.00 0.00 0.00 0.86
3978 6248 6.438425 GGTACTCCCTCCGTCCAATAATATAA 59.562 42.308 0.00 0.00 0.00 0.98
3979 6249 6.607004 ACTCCCTCCGTCCAATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3980 6250 6.320518 ACTCCCTCCGTCCAATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3981 6251 6.960542 ACTCCCTCCGTCCAATAATATAAGAT 59.039 38.462 0.00 0.00 0.00 2.40
3982 6252 7.124448 ACTCCCTCCGTCCAATAATATAAGATC 59.876 40.741 0.00 0.00 0.00 2.75
3983 6253 6.096423 TCCCTCCGTCCAATAATATAAGATCG 59.904 42.308 0.00 0.00 0.00 3.69
3984 6254 6.127423 CCCTCCGTCCAATAATATAAGATCGT 60.127 42.308 0.00 0.00 0.00 3.73
3985 6255 7.321153 CCTCCGTCCAATAATATAAGATCGTT 58.679 38.462 0.00 0.00 0.00 3.85
3986 6256 7.817962 CCTCCGTCCAATAATATAAGATCGTTT 59.182 37.037 0.00 0.00 0.00 3.60
3987 6257 9.204570 CTCCGTCCAATAATATAAGATCGTTTT 57.795 33.333 0.00 0.00 0.00 2.43
3988 6258 8.984764 TCCGTCCAATAATATAAGATCGTTTTG 58.015 33.333 0.00 0.00 0.00 2.44
3989 6259 7.744715 CCGTCCAATAATATAAGATCGTTTTGC 59.255 37.037 0.00 0.00 0.00 3.68
3990 6260 8.279800 CGTCCAATAATATAAGATCGTTTTGCA 58.720 33.333 0.00 0.00 0.00 4.08
3991 6261 9.944663 GTCCAATAATATAAGATCGTTTTGCAA 57.055 29.630 0.00 0.00 0.00 4.08
3993 6263 8.905702 CCAATAATATAAGATCGTTTTGCAAGC 58.094 33.333 0.00 0.00 0.00 4.01
3994 6264 9.669353 CAATAATATAAGATCGTTTTGCAAGCT 57.331 29.630 0.00 0.00 0.00 3.74
3995 6265 9.669353 AATAATATAAGATCGTTTTGCAAGCTG 57.331 29.630 0.00 0.00 0.00 4.24
3996 6266 6.683974 ATATAAGATCGTTTTGCAAGCTGT 57.316 33.333 0.00 0.00 0.00 4.40
3997 6267 3.715628 AAGATCGTTTTGCAAGCTGTT 57.284 38.095 0.00 0.00 0.00 3.16
3998 6268 3.715628 AGATCGTTTTGCAAGCTGTTT 57.284 38.095 0.00 0.00 0.00 2.83
3999 6269 4.045636 AGATCGTTTTGCAAGCTGTTTT 57.954 36.364 0.00 0.00 0.00 2.43
4000 6270 5.181690 AGATCGTTTTGCAAGCTGTTTTA 57.818 34.783 0.00 0.00 0.00 1.52
4001 6271 5.215160 AGATCGTTTTGCAAGCTGTTTTAG 58.785 37.500 0.00 0.00 0.00 1.85
4028 6298 8.657387 TCACAAAATGACCTTAAATTATGGGA 57.343 30.769 9.36 0.00 29.99 4.37
4030 6300 7.763985 CACAAAATGACCTTAAATTATGGGACC 59.236 37.037 9.36 0.00 0.00 4.46
4031 6301 7.456269 ACAAAATGACCTTAAATTATGGGACCA 59.544 33.333 9.36 0.00 0.00 4.02
4063 6333 6.453092 AGCTACGTTACAAAACTGTGTCTAT 58.547 36.000 0.00 0.00 33.15 1.98
4372 6647 3.062466 CGGGTGTCCTCGAGAGCA 61.062 66.667 15.71 9.42 0.00 4.26
4419 6694 3.058450 GCTCATGTGAATCTCCTCATCG 58.942 50.000 0.00 0.00 0.00 3.84
4442 6717 2.486191 CCATCCTACCCAGCATGAAGTC 60.486 54.545 0.00 0.00 39.69 3.01
4446 6721 4.298626 TCCTACCCAGCATGAAGTCTTAT 58.701 43.478 0.00 0.00 39.69 1.73
4496 6774 0.034059 ACTTCTCACCGGCTGACAAG 59.966 55.000 0.00 10.53 32.54 3.16
4509 6787 0.404040 TGACAAGGGGATCCACCAAC 59.596 55.000 11.44 0.48 41.20 3.77
4524 6802 6.978343 TCCACCAACAGATAAATAAACTCG 57.022 37.500 0.00 0.00 0.00 4.18
4581 6859 3.859386 CCATTGGCAAACTTAATTCGCTC 59.141 43.478 3.01 0.00 0.00 5.03
4589 6867 5.560953 GCAAACTTAATTCGCTCACTGAACT 60.561 40.000 0.00 0.00 0.00 3.01
4615 6893 8.582437 TCCATAAAACTTATATCGGAATCTCGT 58.418 33.333 0.00 0.00 0.00 4.18
4623 6901 1.103803 TCGGAATCTCGTCCCTCTTG 58.896 55.000 0.00 0.00 33.74 3.02
4665 6947 5.751028 GGCGCCTAAATTGCATGTTAAATTA 59.249 36.000 22.15 0.00 0.00 1.40
4666 6948 6.292114 GGCGCCTAAATTGCATGTTAAATTAC 60.292 38.462 22.15 0.00 0.00 1.89
4701 6983 9.457436 TTCCCTAAGGTGTATTTGACTTTTATC 57.543 33.333 0.00 0.00 0.00 1.75
4713 6995 2.331194 ACTTTTATCGGTTCACGGTCG 58.669 47.619 0.00 0.00 44.45 4.79
4716 6998 0.179192 TTATCGGTTCACGGTCGTCG 60.179 55.000 0.00 0.00 44.45 5.12
4717 6999 1.980951 TATCGGTTCACGGTCGTCGG 61.981 60.000 0.00 0.00 44.45 4.79
4720 7002 1.285641 GGTTCACGGTCGTCGGTTA 59.714 57.895 0.00 0.00 44.45 2.85
4741 7023 3.896133 CGCAGATGTGGCATGGGC 61.896 66.667 0.00 0.00 40.13 5.36
4938 7220 0.172578 TGGTCTCGGTATCTTGCACG 59.827 55.000 0.00 0.00 0.00 5.34
4942 7224 0.172578 CTCGGTATCTTGCACGGTCA 59.827 55.000 0.00 0.00 0.00 4.02
4978 7267 2.606065 CCGACACAGTGTACATTCGTGA 60.606 50.000 21.84 0.00 0.00 4.35
4985 7274 2.299013 AGTGTACATTCGTGAGGCAGAA 59.701 45.455 0.00 0.00 0.00 3.02
4992 7281 0.452184 TCGTGAGGCAGAACTCGATC 59.548 55.000 0.00 0.00 40.39 3.69
5031 7324 2.657296 ACCTTGCACACGTCGTCG 60.657 61.111 0.00 0.00 43.34 5.12
5052 7345 3.680786 CGGTGCTGGACCTGACGA 61.681 66.667 16.57 0.00 43.55 4.20
5068 7362 1.751924 GACGACCAGCTCTCCTTGTAT 59.248 52.381 0.00 0.00 0.00 2.29
5071 7365 2.111384 GACCAGCTCTCCTTGTATCCA 58.889 52.381 0.00 0.00 0.00 3.41
5145 7439 3.505386 GCCCAGAGGAAGAGATCTATCA 58.495 50.000 0.00 0.00 33.47 2.15
5147 7441 4.739793 CCCAGAGGAAGAGATCTATCACT 58.260 47.826 0.00 0.00 33.47 3.41
5153 7447 5.765510 AGGAAGAGATCTATCACTCACACT 58.234 41.667 0.00 0.00 35.83 3.55
5158 7452 4.865905 AGATCTATCACTCACACTCCACT 58.134 43.478 0.00 0.00 0.00 4.00
5207 7501 2.032620 CCTCGAGCACACTAACCCTAT 58.967 52.381 6.99 0.00 0.00 2.57
5245 7539 1.298157 CGCTTCAAGATCCGGTTGCA 61.298 55.000 0.00 0.00 0.00 4.08
5265 7559 2.440796 CCCCATCGTGCCATGCTT 60.441 61.111 0.00 0.00 0.00 3.91
5282 7576 2.572095 CTTGGACTGCGCGTGGGATA 62.572 60.000 8.43 0.00 0.00 2.59
5294 7588 1.335964 CGTGGGATATAGTCACCTGCG 60.336 57.143 0.00 0.00 0.00 5.18
5319 7613 0.531090 TGCGGCGTTTCTACAAGTGT 60.531 50.000 9.37 0.00 0.00 3.55
5367 7662 9.231297 CTATATTTTTCAGTTCAGGGACTTTCA 57.769 33.333 0.00 0.00 34.60 2.69
5369 7664 5.576447 TTTTCAGTTCAGGGACTTTCAAC 57.424 39.130 0.00 0.00 34.60 3.18
5383 7678 0.541764 TTCAACCCCATTCAGCCACC 60.542 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.963782 GCCTTTATACTCTTCCCGGAGA 59.036 50.000 0.73 0.00 37.13 3.71
39 40 1.003696 CTTCCCTTCTCTTCGGCCTTT 59.996 52.381 0.00 0.00 0.00 3.11
62 63 4.819630 ACACACATAGTCGTTTGATGGTTT 59.180 37.500 0.00 0.00 0.00 3.27
92 94 2.787144 TCCCCTCAGGAGCCATCA 59.213 61.111 0.00 0.00 40.93 3.07
262 267 7.118390 CAGTAGGATTCAAAACTCTGTTGTAGG 59.882 40.741 0.00 0.00 0.00 3.18
308 313 8.467402 AAGACGAAATACAAAGAGACATGTAG 57.533 34.615 0.00 0.00 35.64 2.74
336 341 3.202151 AGGTCCTCTCTCACAAACCAAAA 59.798 43.478 0.00 0.00 0.00 2.44
340 345 4.828072 ATAAGGTCCTCTCTCACAAACC 57.172 45.455 0.00 0.00 0.00 3.27
364 370 7.275183 TCTACATAATTAAGATGCACACAGCT 58.725 34.615 0.00 0.00 46.79 4.24
368 374 7.096023 CGGTCTCTACATAATTAAGATGCACAC 60.096 40.741 0.00 0.00 0.00 3.82
380 386 8.880991 AGTATTACATCCGGTCTCTACATAAT 57.119 34.615 0.00 0.00 0.00 1.28
427 433 5.659440 ACTCTGTTTTTCAAAAAGAGGCA 57.341 34.783 17.32 2.41 37.41 4.75
429 435 8.532977 TCAAAACTCTGTTTTTCAAAAAGAGG 57.467 30.769 17.32 11.52 37.41 3.69
453 459 6.096673 TCTGTTTTAGCTTTGGGGAAATTC 57.903 37.500 0.00 0.00 0.00 2.17
454 460 5.012046 CCTCTGTTTTAGCTTTGGGGAAATT 59.988 40.000 0.00 0.00 0.00 1.82
501 1991 1.374758 GACACGGAGAGCAAGGGTG 60.375 63.158 0.00 0.00 34.87 4.61
502 1992 2.584391 GGACACGGAGAGCAAGGGT 61.584 63.158 0.00 0.00 0.00 4.34
657 2147 3.760684 AGCCAGATTGTTTTCTTGGCTAG 59.239 43.478 14.14 0.00 42.89 3.42
743 2233 1.430632 CCGTTTCGACCGCTAGCTA 59.569 57.895 13.93 0.00 0.00 3.32
744 2234 2.181021 CCGTTTCGACCGCTAGCT 59.819 61.111 13.93 0.00 0.00 3.32
745 2235 2.884207 CCCGTTTCGACCGCTAGC 60.884 66.667 4.06 4.06 0.00 3.42
746 2236 1.226603 CTCCCGTTTCGACCGCTAG 60.227 63.158 0.00 0.00 0.00 3.42
765 2255 1.640428 TTTGTATGGCTTCTCGCTCG 58.360 50.000 0.00 0.00 39.13 5.03
813 2303 2.289756 GGAGGAGGTGGAGAACAAAGTC 60.290 54.545 0.00 0.00 0.00 3.01
885 2375 1.190833 ACAGGACTGGAGCTGGAGTG 61.191 60.000 4.14 0.00 34.19 3.51
906 2396 4.207891 AGCACTCACCAATAACTACCAG 57.792 45.455 0.00 0.00 0.00 4.00
938 2428 2.972505 GTGCTGTCACACCCCACG 60.973 66.667 0.00 0.00 42.66 4.94
945 2435 2.588596 CCGTGCAGTGCTGTCACA 60.589 61.111 17.60 0.00 45.49 3.58
946 2436 4.017877 GCCGTGCAGTGCTGTCAC 62.018 66.667 17.60 4.88 43.44 3.67
949 2439 4.908687 TTCGCCGTGCAGTGCTGT 62.909 61.111 17.60 0.00 0.00 4.40
950 2440 4.081030 CTTCGCCGTGCAGTGCTG 62.081 66.667 17.60 8.80 0.00 4.41
993 2494 4.864334 CCGGTCCTCATGCCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
994 2495 4.864334 CCCGGTCCTCATGCCTGC 62.864 72.222 0.00 0.00 0.00 4.85
995 2496 4.181010 CCCCGGTCCTCATGCCTG 62.181 72.222 0.00 0.00 0.00 4.85
1059 2560 4.735132 ACCATGGACCGTGCGTCG 62.735 66.667 21.47 0.00 42.99 5.12
1378 2879 1.883084 GCAGAATACGGCTGGTCGG 60.883 63.158 0.00 0.00 34.59 4.79
1379 2880 0.872021 GAGCAGAATACGGCTGGTCG 60.872 60.000 0.00 0.00 46.67 4.79
1381 2882 1.264749 TGGAGCAGAATACGGCTGGT 61.265 55.000 0.00 0.00 46.41 4.00
1382 2883 0.531532 CTGGAGCAGAATACGGCTGG 60.532 60.000 0.00 0.00 46.41 4.85
1383 2884 0.176680 ACTGGAGCAGAATACGGCTG 59.823 55.000 0.00 0.00 46.41 4.85
1386 2887 3.802948 AAGTACTGGAGCAGAATACGG 57.197 47.619 0.00 0.00 35.18 4.02
1391 2892 4.408276 AGACACTAAGTACTGGAGCAGAA 58.592 43.478 0.00 0.00 35.18 3.02
1405 2906 6.393990 ACAAAATGTGCAAACAAGACACTAA 58.606 32.000 0.00 0.00 35.33 2.24
1428 2929 4.553938 CGTGGTGACCAGATGTTTGTAAAC 60.554 45.833 3.58 0.65 35.17 2.01
1446 2947 2.695666 CCAGTGGATATCTTCTCGTGGT 59.304 50.000 1.68 0.00 0.00 4.16
1449 2950 4.023980 TCAACCAGTGGATATCTTCTCGT 58.976 43.478 18.40 0.00 0.00 4.18
1468 2969 8.196103 TGATGTGAAACTGTTGATTGAAATCAA 58.804 29.630 13.20 13.20 44.46 2.57
1470 2971 7.148853 GCTGATGTGAAACTGTTGATTGAAATC 60.149 37.037 0.00 0.00 38.04 2.17
1498 2999 1.393883 GTTCGCGAGGATTTGTCCTTC 59.606 52.381 9.59 0.00 40.86 3.46
1539 3040 4.699257 GTGAGAGGTGCATTTCTGATTTCT 59.301 41.667 7.56 0.00 0.00 2.52
1540 3041 4.456911 TGTGAGAGGTGCATTTCTGATTTC 59.543 41.667 7.56 0.00 0.00 2.17
1541 3042 4.401022 TGTGAGAGGTGCATTTCTGATTT 58.599 39.130 7.56 0.00 0.00 2.17
1542 3043 4.025040 TGTGAGAGGTGCATTTCTGATT 57.975 40.909 7.56 0.00 0.00 2.57
1543 3044 3.708403 TGTGAGAGGTGCATTTCTGAT 57.292 42.857 7.56 0.00 0.00 2.90
1544 3045 3.405831 CTTGTGAGAGGTGCATTTCTGA 58.594 45.455 7.56 0.00 0.00 3.27
1741 3244 8.375506 ACTACCATATCTTCAGTTTTGACTTCA 58.624 33.333 0.00 0.00 31.71 3.02
1761 3264 4.616553 ACTGTATCCCACACATACTACCA 58.383 43.478 0.00 0.00 32.33 3.25
1872 3379 1.274167 TCCCACTGTTGTCCGACATAC 59.726 52.381 1.09 4.73 0.00 2.39
1927 3434 4.225942 TGCTCTCCATCTGTAAAAGGACAT 59.774 41.667 0.00 0.00 0.00 3.06
2007 3514 0.036765 GACGGCACCTATTGTCCACA 60.037 55.000 0.00 0.00 0.00 4.17
2014 3521 0.034574 TGCATTGGACGGCACCTATT 60.035 50.000 0.00 0.00 34.58 1.73
2024 3531 2.113860 TGCTCTAACCTGCATTGGAC 57.886 50.000 0.00 0.00 33.94 4.02
2041 3548 1.367659 TGTTGGCAAAAACAGCTTGC 58.632 45.000 0.00 0.00 46.82 4.01
2095 3602 5.184479 ACACAAACAGCAAATGCATCTCTAT 59.816 36.000 8.28 0.00 45.16 1.98
2331 3920 3.192844 TGGATGACTGTTTCGAGACTACC 59.807 47.826 7.68 3.11 0.00 3.18
2339 3928 1.019278 CGGGGTGGATGACTGTTTCG 61.019 60.000 0.00 0.00 0.00 3.46
2370 3959 4.338964 TGTATGATTTGCCATGTAGCCTTG 59.661 41.667 0.00 0.00 0.00 3.61
2380 3969 4.640201 GCTCCTACTTTGTATGATTTGCCA 59.360 41.667 0.00 0.00 0.00 4.92
2403 3993 5.083533 AGCTCTTGAAGACTACCTCAATG 57.916 43.478 0.00 0.00 0.00 2.82
2511 4101 5.644644 CATGTTAAGAGAATTGGAGTTGGC 58.355 41.667 0.00 0.00 0.00 4.52
2513 4103 6.258230 TGCATGTTAAGAGAATTGGAGTTG 57.742 37.500 0.00 0.00 0.00 3.16
2594 4776 9.797642 ATGAGATGGCATATTTGAATGTTACTA 57.202 29.630 0.00 0.00 0.00 1.82
2595 4777 8.701908 ATGAGATGGCATATTTGAATGTTACT 57.298 30.769 0.00 0.00 0.00 2.24
2596 4778 8.570488 TGATGAGATGGCATATTTGAATGTTAC 58.430 33.333 0.00 0.00 0.00 2.50
2603 4785 4.461431 GGCATGATGAGATGGCATATTTGA 59.539 41.667 0.00 0.00 45.82 2.69
2630 4812 5.841957 AATATGGGTCTTTTCTGATGCAC 57.158 39.130 0.00 0.00 0.00 4.57
2636 4818 6.986231 GGGCATTTTAATATGGGTCTTTTCTG 59.014 38.462 7.83 0.00 0.00 3.02
2812 4994 1.307355 TGGACATGATGCCGCACAAG 61.307 55.000 0.00 0.00 0.00 3.16
2813 4995 1.303155 TGGACATGATGCCGCACAA 60.303 52.632 0.00 0.00 0.00 3.33
2814 4996 1.746239 CTGGACATGATGCCGCACA 60.746 57.895 0.00 0.00 0.00 4.57
2819 5001 6.425114 CACTACTATTAACTGGACATGATGCC 59.575 42.308 0.00 0.00 0.00 4.40
2820 5002 6.986817 ACACTACTATTAACTGGACATGATGC 59.013 38.462 0.00 0.00 0.00 3.91
2821 5003 7.981789 ACACACTACTATTAACTGGACATGATG 59.018 37.037 0.00 0.00 0.00 3.07
2822 5004 7.981789 CACACACTACTATTAACTGGACATGAT 59.018 37.037 0.00 0.00 0.00 2.45
2823 5005 7.039293 ACACACACTACTATTAACTGGACATGA 60.039 37.037 0.00 0.00 0.00 3.07
2824 5006 7.063426 CACACACACTACTATTAACTGGACATG 59.937 40.741 0.00 0.00 0.00 3.21
2825 5007 7.039293 TCACACACACTACTATTAACTGGACAT 60.039 37.037 0.00 0.00 0.00 3.06
2826 5008 6.265876 TCACACACACTACTATTAACTGGACA 59.734 38.462 0.00 0.00 0.00 4.02
2827 5009 6.684686 TCACACACACTACTATTAACTGGAC 58.315 40.000 0.00 0.00 0.00 4.02
2828 5010 6.904463 TCACACACACTACTATTAACTGGA 57.096 37.500 0.00 0.00 0.00 3.86
2829 5011 8.547967 AAATCACACACACTACTATTAACTGG 57.452 34.615 0.00 0.00 0.00 4.00
2855 5037 4.009675 GTGAGGGAACACATGCTAAATGA 58.990 43.478 0.00 0.00 40.11 2.57
2914 5096 7.117812 GTGTTGTGCATACATGTTTAGTAGACT 59.882 37.037 2.30 0.00 36.53 3.24
2995 5190 5.422214 ACCTACAAGATACAAAGAGGTGG 57.578 43.478 0.00 0.00 34.55 4.61
2998 5193 6.037098 CGAGAACCTACAAGATACAAAGAGG 58.963 44.000 0.00 0.00 0.00 3.69
3018 5213 6.307800 CAGAAAAGAAAACTTTGTTTGCGAGA 59.692 34.615 0.00 0.00 34.94 4.04
3061 5270 7.378966 AGCAGCTATACGAAATAATCTAAGCA 58.621 34.615 0.00 0.00 0.00 3.91
3063 5272 7.219154 CCGAGCAGCTATACGAAATAATCTAAG 59.781 40.741 0.00 0.00 0.00 2.18
3076 5285 4.451435 GGGATTTTAACCGAGCAGCTATAC 59.549 45.833 0.00 0.00 0.00 1.47
3086 5295 1.807742 CAAGCGTGGGATTTTAACCGA 59.192 47.619 0.00 0.00 0.00 4.69
3108 5317 4.742438 TTTATGTCGGTGCTTTCAACTC 57.258 40.909 0.00 0.00 0.00 3.01
3166 5375 8.892905 CAAAACTACTCGCTTTGTAAAGAAATC 58.107 33.333 8.47 0.00 38.28 2.17
3178 5388 5.051240 CGTTGTACTTCAAAACTACTCGCTT 60.051 40.000 0.00 0.00 37.81 4.68
3181 5391 5.684626 AGTCGTTGTACTTCAAAACTACTCG 59.315 40.000 0.00 0.00 37.81 4.18
3200 5410 5.743117 AGGAGTTGTACTGAGTATAGTCGT 58.257 41.667 0.00 6.67 32.19 4.34
3201 5411 6.073657 GCTAGGAGTTGTACTGAGTATAGTCG 60.074 46.154 0.00 1.33 32.19 4.18
3209 5419 5.451242 GGAATCAGCTAGGAGTTGTACTGAG 60.451 48.000 0.00 0.00 37.56 3.35
3210 5420 4.402793 GGAATCAGCTAGGAGTTGTACTGA 59.597 45.833 0.00 0.00 38.42 3.41
3212 5422 4.353777 TGGAATCAGCTAGGAGTTGTACT 58.646 43.478 0.00 0.00 0.00 2.73
3213 5423 4.737855 TGGAATCAGCTAGGAGTTGTAC 57.262 45.455 0.00 0.00 0.00 2.90
3214 5424 4.381612 CGTTGGAATCAGCTAGGAGTTGTA 60.382 45.833 0.00 0.00 0.00 2.41
3215 5425 3.617531 CGTTGGAATCAGCTAGGAGTTGT 60.618 47.826 0.00 0.00 0.00 3.32
3216 5426 2.932614 CGTTGGAATCAGCTAGGAGTTG 59.067 50.000 0.00 0.00 0.00 3.16
3217 5427 2.678190 GCGTTGGAATCAGCTAGGAGTT 60.678 50.000 0.00 0.00 0.00 3.01
3219 5429 1.137872 AGCGTTGGAATCAGCTAGGAG 59.862 52.381 0.00 0.00 38.29 3.69
3220 5430 1.195115 AGCGTTGGAATCAGCTAGGA 58.805 50.000 0.00 0.00 38.29 2.94
3221 5431 2.159099 TGTAGCGTTGGAATCAGCTAGG 60.159 50.000 0.00 0.00 42.05 3.02
3222 5432 3.165058 TGTAGCGTTGGAATCAGCTAG 57.835 47.619 0.00 0.00 42.05 3.42
3233 5444 3.491104 GGAGGGAGTAGATTGTAGCGTTG 60.491 52.174 0.00 0.00 0.00 4.10
3234 5445 2.694109 GGAGGGAGTAGATTGTAGCGTT 59.306 50.000 0.00 0.00 0.00 4.84
3258 5469 5.335583 CCATTTCTGCGACAAGTAATTTGGA 60.336 40.000 0.00 0.00 41.25 3.53
3262 5473 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3264 5475 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3266 5477 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3267 5478 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3268 5479 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3269 5480 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3271 5482 6.405278 TTCTAGATACATCCATTTCTGCGA 57.595 37.500 0.00 0.00 0.00 5.10
3301 5512 7.175990 TCGCATGTATGGTTGTATCTAGATGTA 59.824 37.037 15.79 1.12 0.00 2.29
3304 5515 6.015434 TGTCGCATGTATGGTTGTATCTAGAT 60.015 38.462 10.73 10.73 0.00 1.98
3308 5519 4.400529 TGTCGCATGTATGGTTGTATCT 57.599 40.909 0.00 0.00 0.00 1.98
3309 5520 4.570772 ACTTGTCGCATGTATGGTTGTATC 59.429 41.667 0.00 0.00 0.00 2.24
3310 5521 4.513442 ACTTGTCGCATGTATGGTTGTAT 58.487 39.130 0.00 0.00 0.00 2.29
3311 5522 3.932822 ACTTGTCGCATGTATGGTTGTA 58.067 40.909 0.00 0.00 0.00 2.41
3312 5523 2.778299 ACTTGTCGCATGTATGGTTGT 58.222 42.857 0.00 0.00 0.00 3.32
3313 5524 4.937696 TTACTTGTCGCATGTATGGTTG 57.062 40.909 0.00 0.00 0.00 3.77
3314 5525 5.220586 CGAATTACTTGTCGCATGTATGGTT 60.221 40.000 0.00 4.03 0.00 3.67
3315 5526 4.270084 CGAATTACTTGTCGCATGTATGGT 59.730 41.667 0.00 0.00 0.00 3.55
3316 5527 4.318760 CCGAATTACTTGTCGCATGTATGG 60.319 45.833 0.00 4.42 35.93 2.74
3317 5528 4.506288 TCCGAATTACTTGTCGCATGTATG 59.494 41.667 0.00 0.00 35.93 2.39
3318 5529 4.689071 TCCGAATTACTTGTCGCATGTAT 58.311 39.130 0.00 0.00 35.93 2.29
3319 5530 4.112716 TCCGAATTACTTGTCGCATGTA 57.887 40.909 0.00 2.87 35.93 2.29
3320 5531 2.967362 TCCGAATTACTTGTCGCATGT 58.033 42.857 0.00 4.39 35.93 3.21
3321 5532 3.670203 GTTCCGAATTACTTGTCGCATG 58.330 45.455 0.00 0.00 35.93 4.06
3322 5533 2.347452 CGTTCCGAATTACTTGTCGCAT 59.653 45.455 0.00 0.00 35.93 4.73
3323 5534 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3324 5535 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3325 5536 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3326 5537 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3327 5538 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3328 5539 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3329 5540 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3330 5541 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3331 5542 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3332 5543 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3333 5544 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3334 5545 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
3336 5547 0.679002 CACTACTCCCTCCGTTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
3337 5548 1.807886 CACTACTCCCTCCGTTCCG 59.192 63.158 0.00 0.00 0.00 4.30
3340 5551 0.333993 TAGGCACTACTCCCTCCGTT 59.666 55.000 0.00 0.00 41.75 4.44
3342 5553 1.033574 CTTAGGCACTACTCCCTCCG 58.966 60.000 0.00 0.00 42.67 4.63
3355 5566 4.674475 TGTTTTCGTTTCCAAACTTAGGC 58.326 39.130 0.91 0.00 36.77 3.93
3358 5569 5.900865 ACCTGTTTTCGTTTCCAAACTTA 57.099 34.783 0.91 0.00 36.77 2.24
3362 5573 6.543100 AGTGTATACCTGTTTTCGTTTCCAAA 59.457 34.615 0.00 0.00 0.00 3.28
3364 5575 5.613329 AGTGTATACCTGTTTTCGTTTCCA 58.387 37.500 0.00 0.00 0.00 3.53
3406 5617 0.104304 GGAGTACATACTGCCACCCG 59.896 60.000 0.00 0.00 38.53 5.28
3413 5624 8.842358 TTTCTTTACAAAGGGAGTACATACTG 57.158 34.615 0.00 0.00 35.23 2.74
3451 5713 8.548877 ACTCCCTCTGTAAAGAAAATATAAGCA 58.451 33.333 0.00 0.00 0.00 3.91
3500 5762 7.334921 TCGTTGGTACATTTAGGGTAATTTCTG 59.665 37.037 0.00 0.00 39.30 3.02
3513 5775 5.123820 CACATTGGATCTCGTTGGTACATTT 59.876 40.000 0.00 0.00 39.30 2.32
3518 5780 2.835156 TCCACATTGGATCTCGTTGGTA 59.165 45.455 0.00 0.00 42.67 3.25
3863 6128 3.002348 CCGCGAGAATTATTCAGGGTTTC 59.998 47.826 8.23 0.00 0.00 2.78
3928 6198 3.513912 CCTACCTGCCAATCCATATACGA 59.486 47.826 0.00 0.00 0.00 3.43
3953 6223 2.077687 TATTGGACGGAGGGAGTACC 57.922 55.000 0.00 0.00 40.67 3.34
3968 6238 9.669353 AGCTTGCAAAACGATCTTATATTATTG 57.331 29.630 0.00 0.00 0.00 1.90
3969 6239 9.669353 CAGCTTGCAAAACGATCTTATATTATT 57.331 29.630 0.00 0.00 0.00 1.40
3975 6245 5.376854 AACAGCTTGCAAAACGATCTTAT 57.623 34.783 0.00 0.00 0.00 1.73
3976 6246 4.829064 AACAGCTTGCAAAACGATCTTA 57.171 36.364 0.00 0.00 0.00 2.10
3977 6247 3.715628 AACAGCTTGCAAAACGATCTT 57.284 38.095 0.00 0.00 0.00 2.40
3978 6248 3.715628 AAACAGCTTGCAAAACGATCT 57.284 38.095 0.00 0.00 0.00 2.75
3979 6249 5.486095 CTAAAACAGCTTGCAAAACGATC 57.514 39.130 0.00 0.00 0.00 3.69
4002 6272 8.748412 TCCCATAATTTAAGGTCATTTTGTGAG 58.252 33.333 0.00 0.00 37.56 3.51
4003 6273 8.527810 GTCCCATAATTTAAGGTCATTTTGTGA 58.472 33.333 0.00 0.00 0.00 3.58
4004 6274 7.763985 GGTCCCATAATTTAAGGTCATTTTGTG 59.236 37.037 0.00 0.00 0.00 3.33
4005 6275 7.456269 TGGTCCCATAATTTAAGGTCATTTTGT 59.544 33.333 0.00 0.00 0.00 2.83
4006 6276 7.846066 TGGTCCCATAATTTAAGGTCATTTTG 58.154 34.615 0.00 0.00 0.00 2.44
4007 6277 8.442660 TTGGTCCCATAATTTAAGGTCATTTT 57.557 30.769 0.00 0.00 0.00 1.82
4008 6278 7.125659 CCTTGGTCCCATAATTTAAGGTCATTT 59.874 37.037 0.00 0.00 0.00 2.32
4028 6298 1.934410 AACGTAGCTACTCCCTTGGT 58.066 50.000 21.20 7.35 0.00 3.67
4030 6300 4.445452 TTGTAACGTAGCTACTCCCTTG 57.555 45.455 21.20 7.42 29.27 3.61
4031 6301 5.011431 AGTTTTGTAACGTAGCTACTCCCTT 59.989 40.000 21.20 9.57 39.31 3.95
4063 6333 0.318022 CTGCGCAGAAACATGCAACA 60.318 50.000 33.66 0.00 46.87 3.33
4170 6442 0.941542 TGCCAACACGTTAGCTTCAC 59.058 50.000 0.00 0.00 0.00 3.18
4172 6444 1.135689 CCATGCCAACACGTTAGCTTC 60.136 52.381 0.00 0.00 0.00 3.86
4372 6647 3.328931 TCAGCCTTCTTGACCTTTGAGAT 59.671 43.478 0.00 0.00 0.00 2.75
4419 6694 3.713902 CATGCTGGGTAGGATGGAC 57.286 57.895 1.41 0.00 45.76 4.02
4442 6717 9.840427 TTTTCTTTTCCGAATTCAGCTAATAAG 57.160 29.630 6.22 0.26 0.00 1.73
4446 6721 7.504924 TCTTTTCTTTTCCGAATTCAGCTAA 57.495 32.000 6.22 0.00 0.00 3.09
4496 6774 3.662759 TTTATCTGTTGGTGGATCCCC 57.337 47.619 9.90 10.76 34.77 4.81
4524 6802 7.535489 ACAAATCCGTACAAATACTAAGCTC 57.465 36.000 0.00 0.00 0.00 4.09
4540 6818 3.283751 TGGGCCATTTAGTACAAATCCG 58.716 45.455 0.00 0.00 0.00 4.18
4581 6859 8.765219 CCGATATAAGTTTTATGGAGTTCAGTG 58.235 37.037 0.00 0.00 0.00 3.66
4589 6867 8.582437 ACGAGATTCCGATATAAGTTTTATGGA 58.418 33.333 0.00 0.76 0.00 3.41
4615 6893 1.404391 GATAGACGCGAACAAGAGGGA 59.596 52.381 15.93 0.00 0.00 4.20
4623 6901 1.287425 CCCCTTTGATAGACGCGAAC 58.713 55.000 15.93 6.52 0.00 3.95
4665 6947 3.165071 CACCTTAGGGAAAAAGCATGGT 58.835 45.455 2.32 0.00 36.25 3.55
4666 6948 3.165071 ACACCTTAGGGAAAAAGCATGG 58.835 45.455 2.32 0.00 36.25 3.66
4672 6954 8.541899 AAAGTCAAATACACCTTAGGGAAAAA 57.458 30.769 2.32 0.00 36.25 1.94
4673 6955 8.541899 AAAAGTCAAATACACCTTAGGGAAAA 57.458 30.769 2.32 0.00 36.25 2.29
4701 6983 2.456594 TAACCGACGACCGTGAACCG 62.457 60.000 0.00 0.00 36.31 4.44
4716 6998 2.461110 CCACATCTGCGGCGTAACC 61.461 63.158 9.37 0.00 0.00 2.85
4717 6999 3.089784 CCACATCTGCGGCGTAAC 58.910 61.111 9.37 0.00 0.00 2.50
4742 7024 1.560923 CTTAGGACATGCCGTCTTCG 58.439 55.000 0.00 0.00 44.70 3.79
4743 7025 1.941325 CCTTAGGACATGCCGTCTTC 58.059 55.000 0.00 0.00 44.70 2.87
4744 7026 0.107654 GCCTTAGGACATGCCGTCTT 60.108 55.000 0.69 0.00 44.70 3.01
4745 7027 1.522569 GCCTTAGGACATGCCGTCT 59.477 57.895 0.69 0.00 44.70 4.18
4746 7028 1.883084 CGCCTTAGGACATGCCGTC 60.883 63.158 0.69 0.00 44.57 4.79
4747 7029 2.186903 CGCCTTAGGACATGCCGT 59.813 61.111 0.69 0.00 43.43 5.68
4748 7030 2.173669 CACGCCTTAGGACATGCCG 61.174 63.158 0.69 0.00 43.43 5.69
4749 7031 1.090052 GTCACGCCTTAGGACATGCC 61.090 60.000 0.69 0.00 0.00 4.40
4750 7032 0.391130 TGTCACGCCTTAGGACATGC 60.391 55.000 0.69 0.00 36.69 4.06
4751 7033 1.066858 AGTGTCACGCCTTAGGACATG 60.067 52.381 0.69 0.00 42.81 3.21
4752 7034 1.267121 AGTGTCACGCCTTAGGACAT 58.733 50.000 0.69 0.00 42.81 3.06
4753 7035 1.045407 AAGTGTCACGCCTTAGGACA 58.955 50.000 0.69 0.00 39.09 4.02
4754 7036 3.521947 ATAAGTGTCACGCCTTAGGAC 57.478 47.619 0.69 0.00 0.00 3.85
4755 7037 4.020928 TCAAATAAGTGTCACGCCTTAGGA 60.021 41.667 0.69 0.00 0.00 2.94
4840 7122 7.019774 ACACAAATCAGATCGTCCAATATTG 57.980 36.000 8.58 8.58 0.00 1.90
4938 7220 4.452455 GTCGGATCCATATGACAAATGACC 59.548 45.833 13.41 0.00 0.00 4.02
4942 7224 5.034852 TGTGTCGGATCCATATGACAAAT 57.965 39.130 18.33 0.00 42.43 2.32
4978 7267 1.209019 AGCATTGATCGAGTTCTGCCT 59.791 47.619 8.62 0.00 0.00 4.75
4985 7274 3.990318 TCGATGTAGCATTGATCGAGT 57.010 42.857 0.00 0.00 42.20 4.18
4992 7281 1.331756 GGCCAACTCGATGTAGCATTG 59.668 52.381 0.00 0.00 31.83 2.82
5068 7362 3.636231 CCTGAACTGGGCCGTGGA 61.636 66.667 0.00 0.00 0.00 4.02
5158 7452 5.686753 ACTGAAAAATGTACCACCACACTA 58.313 37.500 0.00 0.00 0.00 2.74
5170 7464 5.582665 GCTCGAGGAGATAACTGAAAAATGT 59.417 40.000 15.58 0.00 0.00 2.71
5207 7501 1.327303 GGCTGTTGGTTCACCATTGA 58.673 50.000 0.00 0.00 46.97 2.57
5221 7515 1.448540 CGGATCTTGAAGCGGCTGT 60.449 57.895 1.81 0.00 0.00 4.40
5245 7539 2.591753 CATGGCACGATGGGGAGT 59.408 61.111 0.00 0.00 0.00 3.85
5265 7559 1.110518 TATATCCCACGCGCAGTCCA 61.111 55.000 5.73 0.00 0.00 4.02
5282 7576 0.458543 CAAGCGACGCAGGTGACTAT 60.459 55.000 23.70 0.00 40.21 2.12
5303 7597 2.206750 TCACACACTTGTAGAAACGCC 58.793 47.619 0.00 0.00 33.30 5.68
5319 7613 6.822667 AGATTGCTTACATTGTGATTCACA 57.177 33.333 15.41 15.41 43.02 3.58
5367 7662 0.625849 CTAGGTGGCTGAATGGGGTT 59.374 55.000 0.00 0.00 0.00 4.11
5369 7664 1.533711 CCTAGGTGGCTGAATGGGG 59.466 63.158 0.00 0.00 0.00 4.96
5383 7678 5.745227 AGATGATAACCAAACACACCCTAG 58.255 41.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.