Multiple sequence alignment - TraesCS1A01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G283400 chr1A 100.000 3921 0 0 1 3921 480936897 480932977 0.000000e+00 7241.0
1 TraesCS1A01G283400 chr1A 77.758 1115 186 46 1621 2698 481674397 481675486 2.570000e-176 628.0
2 TraesCS1A01G283400 chr1D 91.896 3554 194 42 404 3921 379913323 379909828 0.000000e+00 4881.0
3 TraesCS1A01G283400 chr1D 77.946 1120 187 43 1621 2698 381019449 381020550 0.000000e+00 645.0
4 TraesCS1A01G283400 chr1D 83.175 422 28 12 1 380 379913727 379913307 2.900000e-91 346.0
5 TraesCS1A01G283400 chr1B 93.631 2936 114 29 404 3305 509903677 509900781 0.000000e+00 4318.0
6 TraesCS1A01G283400 chr1B 77.500 1120 192 41 1621 2698 510809232 510810333 5.570000e-173 617.0
7 TraesCS1A01G283400 chr1B 83.966 474 58 9 3451 3918 509900155 509899694 4.650000e-119 438.0
8 TraesCS1A01G283400 chr1B 84.807 441 29 21 1 405 509904074 509903636 3.650000e-110 409.0
9 TraesCS1A01G283400 chr3A 82.559 969 153 9 1738 2699 608751173 608752132 0.000000e+00 839.0
10 TraesCS1A01G283400 chr3A 75.900 1000 188 36 1738 2701 608347365 608346383 2.760000e-126 462.0
11 TraesCS1A01G283400 chr3A 85.811 148 19 2 1121 1267 608750339 608750485 5.250000e-34 156.0
12 TraesCS1A01G283400 chr3A 97.222 36 0 1 3376 3410 423857189 423857224 4.230000e-05 60.2
13 TraesCS1A01G283400 chr3D 79.530 1192 202 33 1738 2906 465510082 465511254 0.000000e+00 811.0
14 TraesCS1A01G283400 chr3D 76.248 1002 181 42 1738 2701 465027152 465026170 2.740000e-131 479.0
15 TraesCS1A01G283400 chr3D 84.459 148 21 2 1121 1267 465509275 465509421 1.140000e-30 145.0
16 TraesCS1A01G283400 chr3D 82.418 91 15 1 3377 3466 319839385 319839475 1.170000e-10 78.7
17 TraesCS1A01G283400 chr3D 88.525 61 6 1 3374 3434 421670465 421670524 5.430000e-09 73.1
18 TraesCS1A01G283400 chr3B 81.153 971 163 12 1738 2699 618870681 618871640 0.000000e+00 761.0
19 TraesCS1A01G283400 chr3B 75.624 1001 189 40 1738 2701 618442175 618441193 2.780000e-121 446.0
20 TraesCS1A01G283400 chr3B 84.459 148 21 2 1121 1267 618869558 618869704 1.140000e-30 145.0
21 TraesCS1A01G283400 chr3B 79.808 104 19 2 3377 3478 400325332 400325229 1.510000e-09 75.0
22 TraesCS1A01G283400 chr4A 76.229 997 187 41 1738 2705 104410506 104409531 2.120000e-132 483.0
23 TraesCS1A01G283400 chr4A 94.737 38 2 0 2004 2041 139546463 139546500 4.230000e-05 60.2
24 TraesCS1A01G283400 chr6A 88.525 61 6 1 3378 3438 104356781 104356840 5.430000e-09 73.1
25 TraesCS1A01G283400 chr6A 88.525 61 6 1 3378 3438 104446807 104446748 5.430000e-09 73.1
26 TraesCS1A01G283400 chr2A 87.719 57 7 0 3378 3434 738142755 738142811 2.530000e-07 67.6
27 TraesCS1A01G283400 chr2B 90.698 43 3 1 3377 3418 6196674 6196716 5.470000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G283400 chr1A 480932977 480936897 3920 True 7241.000000 7241 100.0000 1 3921 1 chr1A.!!$R1 3920
1 TraesCS1A01G283400 chr1A 481674397 481675486 1089 False 628.000000 628 77.7580 1621 2698 1 chr1A.!!$F1 1077
2 TraesCS1A01G283400 chr1D 379909828 379913727 3899 True 2613.500000 4881 87.5355 1 3921 2 chr1D.!!$R1 3920
3 TraesCS1A01G283400 chr1D 381019449 381020550 1101 False 645.000000 645 77.9460 1621 2698 1 chr1D.!!$F1 1077
4 TraesCS1A01G283400 chr1B 509899694 509904074 4380 True 1721.666667 4318 87.4680 1 3918 3 chr1B.!!$R1 3917
5 TraesCS1A01G283400 chr1B 510809232 510810333 1101 False 617.000000 617 77.5000 1621 2698 1 chr1B.!!$F1 1077
6 TraesCS1A01G283400 chr3A 608750339 608752132 1793 False 497.500000 839 84.1850 1121 2699 2 chr3A.!!$F2 1578
7 TraesCS1A01G283400 chr3A 608346383 608347365 982 True 462.000000 462 75.9000 1738 2701 1 chr3A.!!$R1 963
8 TraesCS1A01G283400 chr3D 465026170 465027152 982 True 479.000000 479 76.2480 1738 2701 1 chr3D.!!$R1 963
9 TraesCS1A01G283400 chr3D 465509275 465511254 1979 False 478.000000 811 81.9945 1121 2906 2 chr3D.!!$F3 1785
10 TraesCS1A01G283400 chr3B 618869558 618871640 2082 False 453.000000 761 82.8060 1121 2699 2 chr3B.!!$F1 1578
11 TraesCS1A01G283400 chr3B 618441193 618442175 982 True 446.000000 446 75.6240 1738 2701 1 chr3B.!!$R2 963
12 TraesCS1A01G283400 chr4A 104409531 104410506 975 True 483.000000 483 76.2290 1738 2705 1 chr4A.!!$R1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 941 0.031857 CATCCACTCTCTAGCCAGCG 59.968 60.0 0.00 0.0 0.0 5.18 F
1010 1067 0.040058 AGCTGCACAATGGGAATGGA 59.960 50.0 1.02 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 2180 0.040958 GAGCTTGAACGTGCTGTTGG 60.041 55.0 2.46 0.0 42.09 3.77 R
2999 3682 0.768622 TCCTCGACCACCACCAAATT 59.231 50.0 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 2.499693 TGAATTATCGGTGTGAGGCAGA 59.500 45.455 0.00 0.00 0.00 4.26
147 149 4.757594 TGGTTTCAATGATTAATGGCAGC 58.242 39.130 0.00 0.00 0.00 5.25
161 163 2.704808 GCAGCCCACCAGCTTAAGC 61.705 63.158 20.09 20.09 42.61 3.09
178 180 2.193306 AGCTTTGCAACAGTTTGTCG 57.807 45.000 0.00 0.00 34.90 4.35
179 181 1.199624 GCTTTGCAACAGTTTGTCGG 58.800 50.000 0.00 0.00 34.90 4.79
180 182 1.469079 GCTTTGCAACAGTTTGTCGGT 60.469 47.619 0.00 0.00 34.90 4.69
183 185 4.319911 GCTTTGCAACAGTTTGTCGGTATA 60.320 41.667 0.00 0.00 34.90 1.47
184 186 5.351233 TTTGCAACAGTTTGTCGGTATAG 57.649 39.130 0.00 0.00 34.90 1.31
185 187 3.331150 TGCAACAGTTTGTCGGTATAGG 58.669 45.455 0.00 0.00 34.90 2.57
208 237 1.966451 CCTGCACCGTCCCACTTTC 60.966 63.158 0.00 0.00 0.00 2.62
216 245 1.226030 CGTCCCACTTTCGGTGTTCC 61.226 60.000 0.00 0.00 43.94 3.62
217 246 0.179040 GTCCCACTTTCGGTGTTCCA 60.179 55.000 0.00 0.00 43.94 3.53
223 252 1.133915 ACTTTCGGTGTTCCACATGGT 60.134 47.619 0.00 0.00 35.86 3.55
244 288 5.527214 TGGTGTTAATAGCAGATGCATACAC 59.473 40.000 12.89 12.89 45.16 2.90
293 337 3.772572 TCATCTTCTACCCCATCGACAAA 59.227 43.478 0.00 0.00 0.00 2.83
296 340 5.174037 TCTTCTACCCCATCGACAAATTT 57.826 39.130 0.00 0.00 0.00 1.82
298 342 3.881220 TCTACCCCATCGACAAATTTCC 58.119 45.455 0.00 0.00 0.00 3.13
301 345 2.308866 ACCCCATCGACAAATTTCCTCT 59.691 45.455 0.00 0.00 0.00 3.69
312 361 6.148811 CGACAAATTTCCTCTACCAAGCTTTA 59.851 38.462 0.00 0.00 0.00 1.85
380 429 4.744795 AACTGATATTCCAAGTCTCGCT 57.255 40.909 0.00 0.00 0.00 4.93
381 430 4.744795 ACTGATATTCCAAGTCTCGCTT 57.255 40.909 0.00 0.00 38.08 4.68
382 431 4.688021 ACTGATATTCCAAGTCTCGCTTC 58.312 43.478 0.00 0.00 34.69 3.86
383 432 4.404073 ACTGATATTCCAAGTCTCGCTTCT 59.596 41.667 0.00 0.00 34.69 2.85
384 433 5.105146 ACTGATATTCCAAGTCTCGCTTCTT 60.105 40.000 0.00 0.00 34.69 2.52
386 435 1.512926 TTCCAAGTCTCGCTTCTTGC 58.487 50.000 0.00 0.00 39.47 4.01
387 436 0.320771 TCCAAGTCTCGCTTCTTGCC 60.321 55.000 0.00 0.00 39.47 4.52
388 437 0.603707 CCAAGTCTCGCTTCTTGCCA 60.604 55.000 0.00 0.00 39.47 4.92
389 438 1.229428 CAAGTCTCGCTTCTTGCCAA 58.771 50.000 0.00 0.00 38.78 4.52
390 439 1.603802 CAAGTCTCGCTTCTTGCCAAA 59.396 47.619 0.00 0.00 38.78 3.28
391 440 1.967319 AGTCTCGCTTCTTGCCAAAA 58.033 45.000 0.00 0.00 38.78 2.44
392 441 1.876156 AGTCTCGCTTCTTGCCAAAAG 59.124 47.619 0.00 0.00 38.78 2.27
393 442 1.873591 GTCTCGCTTCTTGCCAAAAGA 59.126 47.619 4.30 0.00 38.78 2.52
394 443 2.290641 GTCTCGCTTCTTGCCAAAAGAA 59.709 45.455 0.99 0.99 38.78 2.52
395 444 2.948979 TCTCGCTTCTTGCCAAAAGAAA 59.051 40.909 2.48 0.00 36.01 2.52
396 445 3.380004 TCTCGCTTCTTGCCAAAAGAAAA 59.620 39.130 2.48 0.00 36.01 2.29
397 446 3.705604 TCGCTTCTTGCCAAAAGAAAAG 58.294 40.909 2.48 0.57 36.01 2.27
398 447 3.380004 TCGCTTCTTGCCAAAAGAAAAGA 59.620 39.130 2.48 2.58 36.01 2.52
399 448 4.111916 CGCTTCTTGCCAAAAGAAAAGAA 58.888 39.130 2.48 0.00 36.01 2.52
400 449 4.566360 CGCTTCTTGCCAAAAGAAAAGAAA 59.434 37.500 2.48 0.00 37.98 2.52
401 450 5.063312 CGCTTCTTGCCAAAAGAAAAGAAAA 59.937 36.000 2.48 0.00 37.98 2.29
402 451 6.402011 CGCTTCTTGCCAAAAGAAAAGAAAAA 60.402 34.615 2.48 0.00 37.98 1.94
403 452 6.963242 GCTTCTTGCCAAAAGAAAAGAAAAAG 59.037 34.615 2.48 0.00 37.98 2.27
404 453 7.148423 GCTTCTTGCCAAAAGAAAAGAAAAAGA 60.148 33.333 2.48 0.00 37.98 2.52
405 454 8.791327 TTCTTGCCAAAAGAAAAGAAAAAGAT 57.209 26.923 0.00 0.00 36.10 2.40
406 455 9.883142 TTCTTGCCAAAAGAAAAGAAAAAGATA 57.117 25.926 0.00 0.00 36.10 1.98
410 459 8.977505 TGCCAAAAGAAAAGAAAAAGATATTCG 58.022 29.630 0.00 0.00 32.04 3.34
411 460 9.191995 GCCAAAAGAAAAGAAAAAGATATTCGA 57.808 29.630 0.00 0.00 32.04 3.71
472 521 1.164411 CCAAGACATGCCTGCGTTTA 58.836 50.000 0.00 0.00 0.00 2.01
532 582 7.910162 CACATGAAGTAGCGTGCTTAAATTAAT 59.090 33.333 0.00 0.00 0.00 1.40
551 601 2.824689 TATTCCTGGCCATCAAAGCA 57.175 45.000 5.51 0.00 0.00 3.91
647 698 4.335647 AACCACTCGCAGGGCCAG 62.336 66.667 6.18 0.00 0.00 4.85
649 700 4.767255 CCACTCGCAGGGCCAGTC 62.767 72.222 6.18 0.00 0.00 3.51
678 729 2.115291 GGTGGCTGGAAAGATCGGC 61.115 63.158 0.00 0.00 0.00 5.54
833 884 0.037975 CCGCCGGCCGTTTATATAGT 60.038 55.000 26.12 0.00 34.38 2.12
839 890 3.572584 CGGCCGTTTATATAGTCACTCC 58.427 50.000 19.50 0.00 0.00 3.85
864 915 3.317711 CCCTAGCTACTCATGTCACTCAG 59.682 52.174 0.00 0.00 0.00 3.35
881 932 0.177604 CAGCACCTCCATCCACTCTC 59.822 60.000 0.00 0.00 0.00 3.20
882 933 0.042431 AGCACCTCCATCCACTCTCT 59.958 55.000 0.00 0.00 0.00 3.10
883 934 1.289231 AGCACCTCCATCCACTCTCTA 59.711 52.381 0.00 0.00 0.00 2.43
884 935 1.686052 GCACCTCCATCCACTCTCTAG 59.314 57.143 0.00 0.00 0.00 2.43
885 936 1.686052 CACCTCCATCCACTCTCTAGC 59.314 57.143 0.00 0.00 0.00 3.42
886 937 1.337118 CCTCCATCCACTCTCTAGCC 58.663 60.000 0.00 0.00 0.00 3.93
887 938 1.412217 CCTCCATCCACTCTCTAGCCA 60.412 57.143 0.00 0.00 0.00 4.75
888 939 1.962807 CTCCATCCACTCTCTAGCCAG 59.037 57.143 0.00 0.00 0.00 4.85
889 940 0.392336 CCATCCACTCTCTAGCCAGC 59.608 60.000 0.00 0.00 0.00 4.85
890 941 0.031857 CATCCACTCTCTAGCCAGCG 59.968 60.000 0.00 0.00 0.00 5.18
902 953 2.049618 CCAGCGAGCTAGCGATCC 60.050 66.667 13.42 0.00 43.00 3.36
930 981 4.182132 CAGCTCCTGCAGAGTTCG 57.818 61.111 17.39 0.00 45.21 3.95
958 1009 5.119815 GCTTTACATAGCTAATCGATCGC 57.880 43.478 11.09 10.66 38.15 4.58
1010 1067 0.040058 AGCTGCACAATGGGAATGGA 59.960 50.000 1.02 0.00 0.00 3.41
1119 1185 1.145803 GCTACACCTTCAACGTGACC 58.854 55.000 0.00 0.00 35.17 4.02
1560 1737 3.932545 TTTTTGTCACTGTGTGTGCTT 57.067 38.095 7.79 0.00 45.81 3.91
1564 1741 0.657840 GTCACTGTGTGTGCTTCACC 59.342 55.000 7.79 3.40 45.81 4.02
1569 1746 0.809636 TGTGTGTGCTTCACCGACTG 60.810 55.000 9.37 0.00 45.61 3.51
1574 1751 1.411246 TGTGCTTCACCGACTGTAACT 59.589 47.619 0.00 0.00 32.73 2.24
1576 1753 3.068448 TGTGCTTCACCGACTGTAACTTA 59.932 43.478 0.00 0.00 32.73 2.24
1578 1755 3.319972 TGCTTCACCGACTGTAACTTACT 59.680 43.478 0.71 0.00 0.00 2.24
1579 1756 4.520111 TGCTTCACCGACTGTAACTTACTA 59.480 41.667 0.71 0.00 0.00 1.82
1580 1757 5.009911 TGCTTCACCGACTGTAACTTACTAA 59.990 40.000 0.71 0.00 0.00 2.24
1581 1758 5.344396 GCTTCACCGACTGTAACTTACTAAC 59.656 44.000 0.71 0.00 0.00 2.34
1582 1759 5.034554 TCACCGACTGTAACTTACTAACG 57.965 43.478 0.71 3.77 0.00 3.18
1583 1760 4.515191 TCACCGACTGTAACTTACTAACGT 59.485 41.667 0.71 0.00 0.00 3.99
1584 1761 4.614284 CACCGACTGTAACTTACTAACGTG 59.386 45.833 0.00 0.00 0.00 4.49
1585 1762 4.515191 ACCGACTGTAACTTACTAACGTGA 59.485 41.667 0.00 0.00 0.00 4.35
1586 1763 4.848299 CCGACTGTAACTTACTAACGTGAC 59.152 45.833 0.00 0.00 0.00 3.67
1587 1764 5.334414 CCGACTGTAACTTACTAACGTGACT 60.334 44.000 0.00 0.00 0.00 3.41
1589 1766 5.218139 ACTGTAACTTACTAACGTGACTGC 58.782 41.667 0.00 0.00 0.00 4.40
1591 1768 5.217393 TGTAACTTACTAACGTGACTGCTG 58.783 41.667 0.00 0.00 0.00 4.41
1729 2176 3.179265 CGTACAACTGCTCGGGCG 61.179 66.667 1.14 0.00 42.25 6.13
2353 3030 2.362120 ACTACAGGCGCCGGTACT 60.362 61.111 31.76 21.49 0.00 2.73
2568 3245 3.621892 CTTCCACGTCGTCGGGACC 62.622 68.421 5.72 0.00 43.98 4.46
2715 3392 4.324486 CCCGGTAGGTTATTTTAACCACCT 60.324 45.833 21.93 10.05 42.69 4.00
2718 3395 5.571251 CGGTAGGTTATTTTAACCACCTCCA 60.571 44.000 21.93 3.55 42.69 3.86
2720 3397 5.594199 AGGTTATTTTAACCACCTCCACT 57.406 39.130 16.54 0.00 42.69 4.00
2721 3398 5.960704 AGGTTATTTTAACCACCTCCACTT 58.039 37.500 16.54 0.00 42.69 3.16
2722 3399 5.773176 AGGTTATTTTAACCACCTCCACTTG 59.227 40.000 16.54 0.00 42.69 3.16
2724 3401 2.738587 TTTAACCACCTCCACTTGCA 57.261 45.000 0.00 0.00 0.00 4.08
2727 3404 1.136828 AACCACCTCCACTTGCACTA 58.863 50.000 0.00 0.00 0.00 2.74
2732 3409 1.002544 ACCTCCACTTGCACTAGCTTC 59.997 52.381 0.00 0.00 42.74 3.86
2734 3411 2.344950 CTCCACTTGCACTAGCTTCAG 58.655 52.381 0.00 0.00 42.74 3.02
2735 3412 1.002430 TCCACTTGCACTAGCTTCAGG 59.998 52.381 0.00 0.00 42.74 3.86
2736 3413 1.271054 CCACTTGCACTAGCTTCAGGT 60.271 52.381 0.00 0.00 42.74 4.00
2738 3415 2.225019 CACTTGCACTAGCTTCAGGTTG 59.775 50.000 0.00 0.00 42.74 3.77
2739 3416 2.104792 ACTTGCACTAGCTTCAGGTTGA 59.895 45.455 0.00 0.00 42.74 3.18
2740 3417 2.169832 TGCACTAGCTTCAGGTTGAC 57.830 50.000 0.00 0.00 42.74 3.18
2741 3418 1.694150 TGCACTAGCTTCAGGTTGACT 59.306 47.619 0.00 0.00 42.74 3.41
2770 3447 4.325972 TGACTGCTGCAGTATTGATTGAA 58.674 39.130 33.04 9.32 45.44 2.69
2772 3449 3.441572 ACTGCTGCAGTATTGATTGAACC 59.558 43.478 32.18 0.00 43.46 3.62
2783 3460 7.647715 CAGTATTGATTGAACCGTTGACTTTTT 59.352 33.333 0.00 0.00 0.00 1.94
2956 3639 0.111446 TCCTTGGCGATTTTGGTCCA 59.889 50.000 0.00 0.00 0.00 4.02
2961 3644 1.873572 GCGATTTTGGTCCATGCGC 60.874 57.895 0.00 0.00 36.12 6.09
3044 3727 0.804989 CTCGATTGGTTTGGCCTGAC 59.195 55.000 3.32 1.89 38.35 3.51
3045 3728 0.400213 TCGATTGGTTTGGCCTGACT 59.600 50.000 3.32 0.00 38.35 3.41
3046 3729 0.523072 CGATTGGTTTGGCCTGACTG 59.477 55.000 3.32 0.00 38.35 3.51
3047 3730 0.890683 GATTGGTTTGGCCTGACTGG 59.109 55.000 3.32 0.00 38.35 4.00
3048 3731 0.482446 ATTGGTTTGGCCTGACTGGA 59.518 50.000 3.32 0.00 38.35 3.86
3049 3732 0.482446 TTGGTTTGGCCTGACTGGAT 59.518 50.000 3.32 0.00 38.35 3.41
3050 3733 0.251297 TGGTTTGGCCTGACTGGATG 60.251 55.000 3.32 0.00 38.35 3.51
3051 3734 0.038166 GGTTTGGCCTGACTGGATGA 59.962 55.000 3.32 0.00 38.35 2.92
3052 3735 1.547675 GGTTTGGCCTGACTGGATGAA 60.548 52.381 3.32 0.00 38.35 2.57
3053 3736 2.450476 GTTTGGCCTGACTGGATGAAT 58.550 47.619 3.32 0.00 38.35 2.57
3054 3737 2.133281 TTGGCCTGACTGGATGAATG 57.867 50.000 3.32 0.00 38.35 2.67
3055 3738 1.288188 TGGCCTGACTGGATGAATGA 58.712 50.000 3.32 0.00 38.35 2.57
3063 3746 5.009710 CCTGACTGGATGAATGAATGAATGG 59.990 44.000 0.00 0.00 38.35 3.16
3100 3787 5.420421 TGTGATGTTTGGTTTTCTCTTGGAA 59.580 36.000 0.00 0.00 0.00 3.53
3139 3826 9.052759 AGATTGGTGTAACTGTAAACTTGTAAG 57.947 33.333 0.00 0.00 36.74 2.34
3251 3947 4.853924 ACATCTGTTGATTGTTGGGTTC 57.146 40.909 0.00 0.00 0.00 3.62
3258 3954 6.775142 TCTGTTGATTGTTGGGTTCAAGATTA 59.225 34.615 0.00 0.00 32.92 1.75
3264 3960 5.499004 TGTTGGGTTCAAGATTACTAGCT 57.501 39.130 0.00 0.00 32.92 3.32
3341 4037 6.293081 CGTATTCTGGACCAGCTAATGATTTG 60.293 42.308 17.33 0.01 0.00 2.32
3343 4039 2.016318 TGGACCAGCTAATGATTTGCG 58.984 47.619 5.99 2.11 0.00 4.85
3352 4048 6.264832 CAGCTAATGATTTGCGGAAATGTTA 58.735 36.000 20.22 15.61 31.58 2.41
3393 4089 4.511527 AGAGAGCATGACAAATCGAATGT 58.488 39.130 6.90 6.90 0.00 2.71
3416 4542 7.859598 TGTTTTTCATGGCAATTTATGTTGTC 58.140 30.769 0.00 0.00 34.37 3.18
3420 4546 3.567576 TGGCAATTTATGTTGTCGTGG 57.432 42.857 0.00 0.00 36.51 4.94
3426 4552 3.704800 TTTATGTTGTCGTGGGGATGA 57.295 42.857 0.00 0.00 0.00 2.92
3445 4571 6.089417 GGGATGACAATTTTCTTTAGCAAACG 59.911 38.462 0.00 0.00 0.00 3.60
3446 4572 5.881637 TGACAATTTTCTTTAGCAAACGC 57.118 34.783 0.00 0.00 0.00 4.84
3487 4613 0.394216 TGAATTGGGCCATCCTCACG 60.394 55.000 7.26 0.00 36.20 4.35
3489 4667 0.552848 AATTGGGCCATCCTCACGAT 59.447 50.000 7.26 0.00 36.20 3.73
3495 4673 2.301870 GGGCCATCCTCACGATAACATA 59.698 50.000 4.39 0.00 0.00 2.29
3503 4681 7.445402 CCATCCTCACGATAACATAAAATCCTT 59.555 37.037 0.00 0.00 0.00 3.36
3527 4705 3.357079 CCTCGGCCTGCACACAAC 61.357 66.667 0.00 0.00 0.00 3.32
3540 4718 2.780924 ACAACCAGGGGGAAGGCA 60.781 61.111 0.00 0.00 38.05 4.75
3566 4744 2.039405 GGAGCACCTCAAGCAGCAG 61.039 63.158 0.00 0.00 31.08 4.24
3573 4751 1.600076 CTCAAGCAGCAGCACCTGT 60.600 57.895 3.17 0.00 45.49 4.00
3668 4848 1.007038 GTTGTGCATGCAGTGGTGG 60.007 57.895 23.41 0.00 0.00 4.61
3685 4865 0.546507 TGGACCAGTGTGCAGGGATA 60.547 55.000 0.00 0.00 37.97 2.59
3690 4870 1.271871 CCAGTGTGCAGGGATAAACCA 60.272 52.381 0.00 0.00 41.20 3.67
3701 4881 2.433436 GGATAAACCACTTCGTTGCCT 58.567 47.619 0.00 0.00 38.79 4.75
3731 4911 3.262420 GTTCCGCTGCTCATCTTAAAGA 58.738 45.455 0.00 0.00 0.00 2.52
3754 4934 1.769026 TCTCTAGCAACGCTCTCCAT 58.231 50.000 0.00 0.00 40.44 3.41
3756 4936 3.491342 TCTCTAGCAACGCTCTCCATAT 58.509 45.455 0.00 0.00 40.44 1.78
3764 4944 7.700044 TAGCAACGCTCTCCATATAATGGACT 61.700 42.308 4.49 1.53 46.26 3.85
3776 4956 0.602638 AATGGACTTGCGCTTCGTCA 60.603 50.000 20.09 10.12 0.00 4.35
3777 4957 0.391661 ATGGACTTGCGCTTCGTCAT 60.392 50.000 20.09 11.63 0.00 3.06
3818 5003 3.996825 GTCATTGACGCCATGTTCC 57.003 52.632 0.13 0.00 0.00 3.62
3819 5004 1.453155 GTCATTGACGCCATGTTCCT 58.547 50.000 0.13 0.00 0.00 3.36
3821 5006 1.003003 TCATTGACGCCATGTTCCTCA 59.997 47.619 0.00 0.00 0.00 3.86
3833 5018 1.069090 TTCCTCATATGGTCGCGCC 59.931 57.895 0.00 6.97 37.90 6.53
3837 5022 2.357517 CATATGGTCGCGCCTCCC 60.358 66.667 18.14 8.66 38.35 4.30
3838 5023 3.626924 ATATGGTCGCGCCTCCCC 61.627 66.667 18.14 6.42 38.35 4.81
3853 5038 2.438434 CCCATCACCTTCACCGGC 60.438 66.667 0.00 0.00 0.00 6.13
3856 5041 1.002134 CATCACCTTCACCGGCCTT 60.002 57.895 0.00 0.00 0.00 4.35
3861 5046 1.073199 CCTTCACCGGCCTTGACTT 59.927 57.895 0.00 0.00 0.00 3.01
3869 5054 2.027625 GGCCTTGACTTGTCCGTCG 61.028 63.158 0.00 0.00 36.71 5.12
3900 5085 4.514577 CGCGACGCTCCCCAAGAT 62.515 66.667 19.02 0.00 0.00 2.40
3904 5089 1.078143 GACGCTCCCCAAGATGCTT 60.078 57.895 0.00 0.00 0.00 3.91
3908 5093 1.202687 CGCTCCCCAAGATGCTTATCA 60.203 52.381 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.326264 AGCCTCATGTGACCTTCACC 59.674 55.000 3.91 0.00 46.40 4.02
161 163 2.559998 ACCGACAAACTGTTGCAAAG 57.440 45.000 0.00 3.85 38.39 2.77
163 165 3.749088 CCTATACCGACAAACTGTTGCAA 59.251 43.478 0.00 0.00 38.39 4.08
178 180 1.068741 CGGTGCAGGAGTTCCTATACC 59.931 57.143 17.03 17.03 46.65 2.73
179 181 1.755380 ACGGTGCAGGAGTTCCTATAC 59.245 52.381 0.00 3.28 46.65 1.47
180 182 2.029623 GACGGTGCAGGAGTTCCTATA 58.970 52.381 0.00 0.00 46.65 1.31
184 186 2.047179 GGACGGTGCAGGAGTTCC 60.047 66.667 0.00 0.00 0.00 3.62
185 187 2.047179 GGGACGGTGCAGGAGTTC 60.047 66.667 1.14 0.00 0.00 3.01
216 245 4.336153 TGCATCTGCTATTAACACCATGTG 59.664 41.667 3.53 0.00 42.66 3.21
217 246 4.525996 TGCATCTGCTATTAACACCATGT 58.474 39.130 3.53 0.00 42.66 3.21
223 252 5.679601 TGGTGTATGCATCTGCTATTAACA 58.320 37.500 0.19 0.00 42.66 2.41
244 288 2.734755 TTTCATCCCAGGCAGTATGG 57.265 50.000 0.00 0.00 35.86 2.74
293 337 6.374417 TCAGTAAAGCTTGGTAGAGGAAAT 57.626 37.500 0.00 0.00 0.00 2.17
296 340 5.307196 AGTTTCAGTAAAGCTTGGTAGAGGA 59.693 40.000 0.00 0.00 0.00 3.71
298 342 6.459923 AGAGTTTCAGTAAAGCTTGGTAGAG 58.540 40.000 0.00 0.00 0.00 2.43
301 345 6.169557 TGAGAGTTTCAGTAAAGCTTGGTA 57.830 37.500 0.00 0.00 0.00 3.25
380 429 8.791327 ATCTTTTTCTTTTCTTTTGGCAAGAA 57.209 26.923 0.00 0.00 34.23 2.52
384 433 8.977505 CGAATATCTTTTTCTTTTCTTTTGGCA 58.022 29.630 0.00 0.00 0.00 4.92
394 443 9.712305 TGAGAGACTTCGAATATCTTTTTCTTT 57.288 29.630 12.05 0.00 0.00 2.52
395 444 9.712305 TTGAGAGACTTCGAATATCTTTTTCTT 57.288 29.630 12.05 0.00 0.00 2.52
396 445 9.712305 TTTGAGAGACTTCGAATATCTTTTTCT 57.288 29.630 12.05 6.27 0.00 2.52
400 449 9.712305 TCTTTTTGAGAGACTTCGAATATCTTT 57.288 29.630 12.05 7.65 0.00 2.52
401 450 9.712305 TTCTTTTTGAGAGACTTCGAATATCTT 57.288 29.630 12.05 4.55 35.37 2.40
402 451 9.712305 TTTCTTTTTGAGAGACTTCGAATATCT 57.288 29.630 10.91 10.91 35.37 1.98
431 480 8.940397 TTGGAATATCAGTTTCTCTTTTTCCT 57.060 30.769 0.00 0.00 33.05 3.36
432 481 9.014297 TCTTGGAATATCAGTTTCTCTTTTTCC 57.986 33.333 0.00 0.00 0.00 3.13
433 482 9.833182 GTCTTGGAATATCAGTTTCTCTTTTTC 57.167 33.333 0.00 0.00 0.00 2.29
472 521 0.679002 GCTGACATGATGGTGCACCT 60.679 55.000 34.75 21.08 36.82 4.00
532 582 2.824689 TGCTTTGATGGCCAGGAATA 57.175 45.000 13.05 0.00 0.00 1.75
551 601 7.944554 TGTTTCTGATTCTGAAACCTAGGAAAT 59.055 33.333 30.26 0.00 45.27 2.17
584 634 2.970974 GCAAGTTGACGGCAGGCTC 61.971 63.158 7.16 0.00 0.00 4.70
587 637 2.639286 GTGCAAGTTGACGGCAGG 59.361 61.111 7.16 0.00 38.38 4.85
678 729 0.246086 AGCTCTTTCTGCTCGACTGG 59.754 55.000 0.00 0.00 35.67 4.00
833 884 2.042569 TGAGTAGCTAGGGTTGGAGTGA 59.957 50.000 0.00 0.00 0.00 3.41
839 890 3.449018 AGTGACATGAGTAGCTAGGGTTG 59.551 47.826 0.00 0.00 0.00 3.77
864 915 1.686052 CTAGAGAGTGGATGGAGGTGC 59.314 57.143 0.00 0.00 0.00 5.01
882 933 1.857318 GATCGCTAGCTCGCTGGCTA 61.857 60.000 21.96 13.69 46.36 3.93
883 934 3.206211 GATCGCTAGCTCGCTGGCT 62.206 63.158 21.96 7.14 46.36 4.75
884 935 2.732843 GATCGCTAGCTCGCTGGC 60.733 66.667 16.09 16.09 45.32 4.85
885 936 2.049618 GGATCGCTAGCTCGCTGG 60.050 66.667 13.93 0.00 0.00 4.85
886 937 0.732196 GATGGATCGCTAGCTCGCTG 60.732 60.000 13.93 2.46 0.00 5.18
887 938 0.893270 AGATGGATCGCTAGCTCGCT 60.893 55.000 13.93 0.00 0.00 4.93
888 939 0.455972 GAGATGGATCGCTAGCTCGC 60.456 60.000 13.93 0.00 28.42 5.03
889 940 0.170116 GGAGATGGATCGCTAGCTCG 59.830 60.000 13.93 0.00 38.72 5.03
890 941 0.530288 GGGAGATGGATCGCTAGCTC 59.470 60.000 13.93 4.14 37.31 4.09
898 949 0.473326 AGCTGCAAGGGAGATGGATC 59.527 55.000 1.02 0.00 0.00 3.36
902 953 0.464013 CAGGAGCTGCAAGGGAGATG 60.464 60.000 8.35 0.00 0.00 2.90
952 1003 0.732880 ACACTTCAACTCCGCGATCG 60.733 55.000 11.69 11.69 0.00 3.69
957 1008 2.617274 GGCCACACTTCAACTCCGC 61.617 63.158 0.00 0.00 0.00 5.54
958 1009 1.227823 TGGCCACACTTCAACTCCG 60.228 57.895 0.00 0.00 0.00 4.63
1035 1101 3.806667 AGGAGGAGGCATGCAGGC 61.807 66.667 21.36 16.47 44.61 4.85
1522 1699 1.194781 AATGGCGGACAGTGGAGTCT 61.195 55.000 0.00 0.00 38.57 3.24
1523 1700 0.321653 AAATGGCGGACAGTGGAGTC 60.322 55.000 0.00 0.00 37.80 3.36
1560 1737 4.515191 ACGTTAGTAAGTTACAGTCGGTGA 59.485 41.667 15.28 0.00 0.00 4.02
1564 1741 5.562998 CAGTCACGTTAGTAAGTTACAGTCG 59.437 44.000 15.28 15.88 0.00 4.18
1569 1746 4.620184 CCAGCAGTCACGTTAGTAAGTTAC 59.380 45.833 4.78 4.78 0.00 2.50
1574 1751 2.351060 CGACCAGCAGTCACGTTAGTAA 60.351 50.000 7.56 0.00 46.69 2.24
1576 1753 0.039437 CGACCAGCAGTCACGTTAGT 60.039 55.000 7.56 0.00 46.69 2.24
1578 1755 1.287815 CCGACCAGCAGTCACGTTA 59.712 57.895 7.56 0.00 46.69 3.18
1579 1756 2.029073 CCGACCAGCAGTCACGTT 59.971 61.111 7.56 0.00 46.69 3.99
1580 1757 2.792947 AACCGACCAGCAGTCACGT 61.793 57.895 7.56 0.00 46.69 4.49
1581 1758 2.029073 AACCGACCAGCAGTCACG 59.971 61.111 7.56 0.00 46.69 4.35
1582 1759 1.961277 CCAACCGACCAGCAGTCAC 60.961 63.158 7.56 0.00 46.69 3.67
1583 1760 2.425592 CCAACCGACCAGCAGTCA 59.574 61.111 7.56 0.00 46.69 3.41
1584 1761 3.050275 GCCAACCGACCAGCAGTC 61.050 66.667 0.00 0.00 42.54 3.51
1585 1762 3.832237 CTGCCAACCGACCAGCAGT 62.832 63.158 2.75 0.00 46.00 4.40
1586 1763 3.052082 CTGCCAACCGACCAGCAG 61.052 66.667 0.00 0.00 45.92 4.24
1587 1764 4.641645 CCTGCCAACCGACCAGCA 62.642 66.667 0.00 0.00 0.00 4.41
1589 1766 2.669569 CACCTGCCAACCGACCAG 60.670 66.667 0.00 0.00 0.00 4.00
1591 1768 2.358737 CTCACCTGCCAACCGACC 60.359 66.667 0.00 0.00 0.00 4.79
1595 1772 1.152756 AACCACTCACCTGCCAACC 60.153 57.895 0.00 0.00 0.00 3.77
1730 2177 3.462333 TTGAACGTGCTGTTGGCGC 62.462 57.895 0.00 0.00 46.87 6.53
1733 2180 0.040958 GAGCTTGAACGTGCTGTTGG 60.041 55.000 2.46 0.00 42.09 3.77
1734 2181 0.657312 TGAGCTTGAACGTGCTGTTG 59.343 50.000 2.46 0.00 42.09 3.33
1736 2183 0.940126 CTTGAGCTTGAACGTGCTGT 59.060 50.000 2.46 0.00 39.91 4.40
1737 2184 0.236711 CCTTGAGCTTGAACGTGCTG 59.763 55.000 2.46 0.00 39.91 4.41
1738 2185 0.179045 ACCTTGAGCTTGAACGTGCT 60.179 50.000 0.00 0.00 42.82 4.40
1739 2186 0.040958 CACCTTGAGCTTGAACGTGC 60.041 55.000 0.00 0.00 0.00 5.34
1740 2187 1.581934 TCACCTTGAGCTTGAACGTG 58.418 50.000 0.00 0.00 0.00 4.49
1741 2188 2.213499 CTTCACCTTGAGCTTGAACGT 58.787 47.619 0.00 0.00 0.00 3.99
2568 3245 2.090524 GTCGTAGTTGCCGAACCCG 61.091 63.158 0.00 0.00 35.89 5.28
2715 3392 1.002430 CCTGAAGCTAGTGCAAGTGGA 59.998 52.381 0.00 0.00 42.74 4.02
2718 3395 2.104792 TCAACCTGAAGCTAGTGCAAGT 59.895 45.455 0.00 0.00 42.74 3.16
2720 3397 2.104792 AGTCAACCTGAAGCTAGTGCAA 59.895 45.455 0.00 0.00 42.74 4.08
2721 3398 1.694150 AGTCAACCTGAAGCTAGTGCA 59.306 47.619 0.00 0.00 42.74 4.57
2722 3399 2.464157 AGTCAACCTGAAGCTAGTGC 57.536 50.000 0.00 0.00 40.05 4.40
2724 3401 4.130118 CACAAAGTCAACCTGAAGCTAGT 58.870 43.478 0.00 0.00 0.00 2.57
2727 3404 3.004752 ACACAAAGTCAACCTGAAGCT 57.995 42.857 0.00 0.00 0.00 3.74
2732 3409 3.731867 GCAGTCAACACAAAGTCAACCTG 60.732 47.826 0.00 0.00 0.00 4.00
2734 3411 2.423538 AGCAGTCAACACAAAGTCAACC 59.576 45.455 0.00 0.00 0.00 3.77
2735 3412 3.429085 CAGCAGTCAACACAAAGTCAAC 58.571 45.455 0.00 0.00 0.00 3.18
2736 3413 2.159393 GCAGCAGTCAACACAAAGTCAA 60.159 45.455 0.00 0.00 0.00 3.18
2738 3415 1.401552 TGCAGCAGTCAACACAAAGTC 59.598 47.619 0.00 0.00 0.00 3.01
2739 3416 1.402968 CTGCAGCAGTCAACACAAAGT 59.597 47.619 14.90 0.00 0.00 2.66
2740 3417 1.402968 ACTGCAGCAGTCAACACAAAG 59.597 47.619 23.11 0.00 41.21 2.77
2741 3418 1.462616 ACTGCAGCAGTCAACACAAA 58.537 45.000 23.11 0.00 41.21 2.83
2783 3460 4.022416 GTGCATGATCCAAACACCTACAAA 60.022 41.667 0.00 0.00 0.00 2.83
2785 3468 3.081061 GTGCATGATCCAAACACCTACA 58.919 45.455 0.00 0.00 0.00 2.74
2999 3682 0.768622 TCCTCGACCACCACCAAATT 59.231 50.000 0.00 0.00 0.00 1.82
3031 3714 0.251297 CATCCAGTCAGGCCAAACCA 60.251 55.000 5.01 0.00 43.14 3.67
3044 3727 5.588240 CACACCATTCATTCATTCATCCAG 58.412 41.667 0.00 0.00 0.00 3.86
3045 3728 4.142116 GCACACCATTCATTCATTCATCCA 60.142 41.667 0.00 0.00 0.00 3.41
3046 3729 4.365723 GCACACCATTCATTCATTCATCC 58.634 43.478 0.00 0.00 0.00 3.51
3047 3730 4.365723 GGCACACCATTCATTCATTCATC 58.634 43.478 0.00 0.00 35.26 2.92
3048 3731 3.133362 GGGCACACCATTCATTCATTCAT 59.867 43.478 0.00 0.00 39.85 2.57
3049 3732 2.496871 GGGCACACCATTCATTCATTCA 59.503 45.455 0.00 0.00 39.85 2.57
3050 3733 2.480073 CGGGCACACCATTCATTCATTC 60.480 50.000 0.00 0.00 40.22 2.67
3051 3734 1.477700 CGGGCACACCATTCATTCATT 59.522 47.619 0.00 0.00 40.22 2.57
3052 3735 1.105457 CGGGCACACCATTCATTCAT 58.895 50.000 0.00 0.00 40.22 2.57
3053 3736 0.251121 ACGGGCACACCATTCATTCA 60.251 50.000 0.00 0.00 40.22 2.57
3054 3737 0.887933 AACGGGCACACCATTCATTC 59.112 50.000 0.00 0.00 40.22 2.67
3055 3738 1.337118 AAACGGGCACACCATTCATT 58.663 45.000 0.00 0.00 40.22 2.57
3063 3746 1.202359 ACATCACAAAAACGGGCACAC 60.202 47.619 0.00 0.00 0.00 3.82
3110 3797 8.403236 ACAAGTTTACAGTTACACCAATCTTTC 58.597 33.333 0.00 0.00 0.00 2.62
3251 3947 8.112016 TGTACATAGCCTAGCTAGTAATCTTG 57.888 38.462 19.31 10.95 44.66 3.02
3305 4001 8.230486 GCTGGTCCAGAATACGATTTAATATTG 58.770 37.037 23.77 0.00 32.44 1.90
3306 4002 8.157476 AGCTGGTCCAGAATACGATTTAATATT 58.843 33.333 23.77 0.00 32.44 1.28
3311 4007 6.474140 TTAGCTGGTCCAGAATACGATTTA 57.526 37.500 23.77 0.00 32.44 1.40
3315 4011 3.958147 TCATTAGCTGGTCCAGAATACGA 59.042 43.478 23.77 9.58 32.44 3.43
3321 4017 3.282021 GCAAATCATTAGCTGGTCCAGA 58.718 45.455 23.77 1.66 32.44 3.86
3324 4020 1.334869 CCGCAAATCATTAGCTGGTCC 59.665 52.381 0.00 0.00 0.00 4.46
3341 4037 3.840890 TCACCACAATAACATTTCCGC 57.159 42.857 0.00 0.00 0.00 5.54
3343 4039 5.799936 CGAACATCACCACAATAACATTTCC 59.200 40.000 0.00 0.00 0.00 3.13
3352 4048 2.079158 CTCAGCGAACATCACCACAAT 58.921 47.619 0.00 0.00 0.00 2.71
3393 4089 6.703607 ACGACAACATAAATTGCCATGAAAAA 59.296 30.769 0.00 0.00 32.47 1.94
3416 4542 4.519540 AAAGAAAATTGTCATCCCCACG 57.480 40.909 0.00 0.00 0.00 4.94
3420 4546 6.089417 CGTTTGCTAAAGAAAATTGTCATCCC 59.911 38.462 0.00 0.00 0.00 3.85
3426 4552 4.439776 GTCGCGTTTGCTAAAGAAAATTGT 59.560 37.500 5.77 0.00 39.65 2.71
3479 4605 7.385205 CGAAGGATTTTATGTTATCGTGAGGAT 59.615 37.037 0.00 0.00 39.25 3.24
3487 4613 5.374898 GCGCTCGAAGGATTTTATGTTATC 58.625 41.667 0.00 0.00 0.00 1.75
3489 4667 3.558418 GGCGCTCGAAGGATTTTATGTTA 59.442 43.478 7.64 0.00 0.00 2.41
3495 4673 2.768834 GAGGCGCTCGAAGGATTTT 58.231 52.632 7.64 0.00 0.00 1.82
3527 4705 1.152610 CATCATGCCTTCCCCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
3573 4751 4.961511 GTGTGCCTCCACGACGCA 62.962 66.667 0.00 0.00 45.04 5.24
3592 4772 3.873812 GCCCGGTCCCCTACATGG 61.874 72.222 0.00 0.00 0.00 3.66
3594 4774 2.768344 CTGCCCGGTCCCCTACAT 60.768 66.667 0.00 0.00 0.00 2.29
3635 4815 0.180406 ACAACAAGTGCTTCCTCCGT 59.820 50.000 0.00 0.00 0.00 4.69
3668 4848 2.084546 GTTTATCCCTGCACACTGGTC 58.915 52.381 0.00 0.00 33.14 4.02
3685 4865 2.052782 AGAAGGCAACGAAGTGGTTT 57.947 45.000 0.00 0.00 45.00 3.27
3723 4903 5.980116 GCGTTGCTAGAGATGATCTTTAAGA 59.020 40.000 0.00 0.00 39.64 2.10
3731 4911 2.295909 GGAGAGCGTTGCTAGAGATGAT 59.704 50.000 0.00 0.00 39.88 2.45
3754 4934 3.120792 GACGAAGCGCAAGTCCATTATA 58.879 45.455 11.47 0.00 41.68 0.98
3756 4936 1.337354 TGACGAAGCGCAAGTCCATTA 60.337 47.619 21.28 5.78 41.68 1.90
3807 4992 1.490490 ACCATATGAGGAACATGGCGT 59.510 47.619 3.65 0.00 39.77 5.68
3813 4998 0.529773 GCGCGACCATATGAGGAACA 60.530 55.000 12.10 0.00 0.00 3.18
3815 5000 1.069090 GGCGCGACCATATGAGGAA 59.931 57.895 12.10 0.00 38.86 3.36
3818 5003 1.373497 GGAGGCGCGACCATATGAG 60.373 63.158 9.25 0.00 43.14 2.90
3819 5004 2.734591 GGAGGCGCGACCATATGA 59.265 61.111 9.25 0.00 43.14 2.15
3821 5006 3.626924 GGGGAGGCGCGACCATAT 61.627 66.667 9.25 0.00 43.14 1.78
3833 5018 1.221840 CGGTGAAGGTGATGGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
3837 5022 2.438434 GGCCGGTGAAGGTGATGG 60.438 66.667 1.90 0.00 0.00 3.51
3838 5023 1.002134 AAGGCCGGTGAAGGTGATG 60.002 57.895 1.90 0.00 0.00 3.07
3839 5024 1.002134 CAAGGCCGGTGAAGGTGAT 60.002 57.895 1.90 0.00 0.00 3.06
3853 5038 2.372690 CGCGACGGACAAGTCAAGG 61.373 63.158 0.00 0.00 40.98 3.61
3856 5041 3.891586 GAGCGCGACGGACAAGTCA 62.892 63.158 12.10 0.00 40.98 3.41
3861 5046 3.324099 GAGAAGAGCGCGACGGACA 62.324 63.158 12.10 0.00 0.00 4.02
3869 5054 3.891834 CGCGAACGAGAAGAGCGC 61.892 66.667 0.00 0.00 44.19 5.92
3900 5085 1.948834 CGTTGATGCCCATGATAAGCA 59.051 47.619 0.00 0.00 41.50 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.