Multiple sequence alignment - TraesCS1A01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G283200 chr1A 100.000 5201 0 0 1 5201 480826330 480831530 0.000000e+00 9605.0
1 TraesCS1A01G283200 chr1A 93.077 260 17 1 32 290 284899230 284899489 3.800000e-101 379.0
2 TraesCS1A01G283200 chr1A 80.550 509 79 17 35 535 101107288 101106792 1.770000e-99 374.0
3 TraesCS1A01G283200 chr1A 84.758 269 36 5 57 323 576317066 576317331 1.110000e-66 265.0
4 TraesCS1A01G283200 chr1A 76.508 315 52 13 33 333 249035275 249034969 9.020000e-33 152.0
5 TraesCS1A01G283200 chr1B 93.504 2386 84 19 2292 4612 509888493 509890872 0.000000e+00 3482.0
6 TraesCS1A01G283200 chr1B 93.545 914 22 19 635 1535 509886831 509887720 0.000000e+00 1327.0
7 TraesCS1A01G283200 chr1B 88.803 777 70 11 1578 2342 509887730 509888501 0.000000e+00 937.0
8 TraesCS1A01G283200 chr1B 91.429 490 23 12 4606 5079 509890908 509891394 0.000000e+00 654.0
9 TraesCS1A01G283200 chr1B 93.750 64 4 0 5138 5201 509891406 509891469 4.290000e-16 97.1
10 TraesCS1A01G283200 chr1D 93.443 2379 82 21 2292 4612 379793729 379796091 0.000000e+00 3461.0
11 TraesCS1A01G283200 chr1D 93.250 1126 38 17 588 1696 379789880 379790984 0.000000e+00 1624.0
12 TraesCS1A01G283200 chr1D 90.490 673 42 14 1686 2342 379793071 379793737 0.000000e+00 869.0
13 TraesCS1A01G283200 chr1D 95.270 296 13 1 4791 5085 379796273 379796568 7.890000e-128 468.0
14 TraesCS1A01G283200 chr1D 85.135 296 26 13 35 317 223030197 223030487 2.370000e-73 287.0
15 TraesCS1A01G283200 chr1D 82.484 314 40 10 33 333 89659932 89659621 1.440000e-65 261.0
16 TraesCS1A01G283200 chr5A 85.793 542 58 10 35 570 392388097 392387569 1.640000e-154 556.0
17 TraesCS1A01G283200 chr5A 85.681 433 59 3 35 465 392387578 392388009 2.210000e-123 453.0
18 TraesCS1A01G283200 chr5A 92.806 278 17 2 287 561 419513934 419514211 2.920000e-107 399.0
19 TraesCS1A01G283200 chr5A 92.692 260 18 1 32 290 465260198 465259939 1.770000e-99 374.0
20 TraesCS1A01G283200 chr5A 90.217 276 25 2 1354 1628 613924846 613925120 4.950000e-95 359.0
21 TraesCS1A01G283200 chr5A 92.946 241 15 2 1042 1282 613924496 613924734 2.980000e-92 350.0
22 TraesCS1A01G283200 chr5A 84.579 214 28 5 118 329 591364955 591364745 1.900000e-49 207.0
23 TraesCS1A01G283200 chr7A 94.231 260 11 2 35 290 722557772 722557513 1.360000e-105 394.0
24 TraesCS1A01G283200 chr7A 92.364 275 18 2 290 561 148983789 148983515 6.320000e-104 388.0
25 TraesCS1A01G283200 chr7A 89.610 154 16 0 3587 3740 83784986 83784833 4.110000e-46 196.0
26 TraesCS1A01G283200 chr6A 92.989 271 15 2 293 561 553185296 553185028 4.880000e-105 392.0
27 TraesCS1A01G283200 chr6A 80.912 351 55 6 63 410 591886493 591886152 3.090000e-67 267.0
28 TraesCS1A01G283200 chr5B 91.873 283 20 3 9 290 275309035 275309315 4.880000e-105 392.0
29 TraesCS1A01G283200 chr5B 90.850 153 14 0 3587 3739 574956597 574956445 6.830000e-49 206.0
30 TraesCS1A01G283200 chr2A 91.429 280 20 4 288 564 723881275 723881553 1.060000e-101 381.0
31 TraesCS1A01G283200 chr3A 90.877 285 23 2 290 571 212025 212309 3.800000e-101 379.0
32 TraesCS1A01G283200 chr3A 92.692 260 18 1 32 290 733919492 733919751 1.770000e-99 374.0
33 TraesCS1A01G283200 chr4A 93.050 259 17 1 33 290 433015917 433016175 1.370000e-100 377.0
34 TraesCS1A01G283200 chr4A 90.909 286 19 5 280 561 575728898 575729180 1.370000e-100 377.0
35 TraesCS1A01G283200 chr7B 90.132 152 15 0 3587 3738 639088040 639087889 1.140000e-46 198.0
36 TraesCS1A01G283200 chr3D 88.750 160 18 0 3580 3739 422517828 422517987 4.110000e-46 196.0
37 TraesCS1A01G283200 chr2B 89.610 154 16 0 3587 3740 140765959 140766112 4.110000e-46 196.0
38 TraesCS1A01G283200 chr2B 89.610 154 16 0 3587 3740 660461574 660461421 4.110000e-46 196.0
39 TraesCS1A01G283200 chr3B 88.125 160 19 0 3580 3739 550641589 550641748 1.910000e-44 191.0
40 TraesCS1A01G283200 chr7D 90.909 44 1 2 3127 3170 478082800 478082760 7.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G283200 chr1A 480826330 480831530 5200 False 9605.00 9605 100.00000 1 5201 1 chr1A.!!$F2 5200
1 TraesCS1A01G283200 chr1B 509886831 509891469 4638 False 1299.42 3482 92.20620 635 5201 5 chr1B.!!$F1 4566
2 TraesCS1A01G283200 chr1D 379789880 379796568 6688 False 1605.50 3461 93.11325 588 5085 4 chr1D.!!$F2 4497
3 TraesCS1A01G283200 chr5A 392387569 392388097 528 True 556.00 556 85.79300 35 570 1 chr5A.!!$R1 535
4 TraesCS1A01G283200 chr5A 613924496 613925120 624 False 354.50 359 91.58150 1042 1628 2 chr5A.!!$F3 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 569 0.034616 CTATGGCTAGCCTGACCAGC 59.965 60.000 33.07 5.85 36.78 4.85 F
577 579 0.181350 CCTGACCAGCCTAATCCCAC 59.819 60.000 0.00 0.00 0.00 4.61 F
795 797 0.534203 TGCTTCCCGCCGAATAATCC 60.534 55.000 0.00 0.00 38.05 3.01 F
2061 4241 0.108662 GCTGGGCCTGCAAACATTAC 60.109 55.000 28.08 0.00 0.00 1.89 F
3089 5334 1.478916 TGATGTTGGGCAGCATTCATG 59.521 47.619 0.00 0.00 38.74 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 3930 0.249120 AAAAATTAGCAAGGCCGGCC 59.751 50.000 39.29 39.29 0.00 6.13 R
2041 4221 0.541530 TAATGTTTGCAGGCCCAGCA 60.542 50.000 15.89 15.89 40.85 4.41 R
2095 4276 1.000274 GCAGCGGTCCAAAAATCTTGT 60.000 47.619 0.00 0.00 0.00 3.16 R
3863 6116 0.752743 GAATACATGCAGCAGGGCCA 60.753 55.000 12.54 0.00 0.00 5.36 R
4776 7208 0.702902 AACCTACTCCCTCCGTCTCA 59.297 55.000 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.203800 TCGTCATCCAATCACTACGC 57.796 50.000 0.00 0.00 0.00 4.42
21 22 1.474879 TCGTCATCCAATCACTACGCA 59.525 47.619 0.00 0.00 0.00 5.24
22 23 1.588404 CGTCATCCAATCACTACGCAC 59.412 52.381 0.00 0.00 0.00 5.34
23 24 2.616960 GTCATCCAATCACTACGCACA 58.383 47.619 0.00 0.00 0.00 4.57
24 25 2.348666 GTCATCCAATCACTACGCACAC 59.651 50.000 0.00 0.00 0.00 3.82
25 26 2.233676 TCATCCAATCACTACGCACACT 59.766 45.455 0.00 0.00 0.00 3.55
26 27 3.445805 TCATCCAATCACTACGCACACTA 59.554 43.478 0.00 0.00 0.00 2.74
27 28 3.945981 TCCAATCACTACGCACACTAA 57.054 42.857 0.00 0.00 0.00 2.24
28 29 3.581755 TCCAATCACTACGCACACTAAC 58.418 45.455 0.00 0.00 0.00 2.34
29 30 2.344441 CCAATCACTACGCACACTAACG 59.656 50.000 0.00 0.00 0.00 3.18
30 31 3.239254 CAATCACTACGCACACTAACGA 58.761 45.455 0.00 0.00 0.00 3.85
31 32 3.564235 ATCACTACGCACACTAACGAA 57.436 42.857 0.00 0.00 0.00 3.85
32 33 3.564235 TCACTACGCACACTAACGAAT 57.436 42.857 0.00 0.00 0.00 3.34
33 34 4.683501 TCACTACGCACACTAACGAATA 57.316 40.909 0.00 0.00 0.00 1.75
41 42 4.430908 GCACACTAACGAATAAGGCTAGT 58.569 43.478 0.00 0.00 0.00 2.57
46 47 7.919091 CACACTAACGAATAAGGCTAGTCATAA 59.081 37.037 0.00 0.00 0.00 1.90
48 49 8.916654 CACTAACGAATAAGGCTAGTCATAATG 58.083 37.037 0.00 0.00 0.00 1.90
86 87 8.120465 GCTAGTAACATAGCGCATTTTAAGAAA 58.880 33.333 11.47 0.00 38.90 2.52
160 162 4.689345 ACTGTAACATAGCGTTTCCAAGAC 59.311 41.667 0.00 0.00 39.14 3.01
177 179 5.775195 TCCAAGACAAGATGAGTCTACAAGA 59.225 40.000 0.00 0.00 45.11 3.02
238 240 9.983804 GTTACTTTGCATTATGAAGGTAGTAAC 57.016 33.333 13.90 13.90 38.55 2.50
240 242 8.494016 ACTTTGCATTATGAAGGTAGTAACTC 57.506 34.615 0.00 0.00 0.00 3.01
316 318 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
328 330 7.059156 GGGGAGTAACTTAGACTAGTGTCATA 58.941 42.308 0.00 0.00 45.20 2.15
330 332 8.569641 GGGAGTAACTTAGACTAGTGTCATATG 58.430 40.741 0.00 0.00 45.20 1.78
331 333 8.077386 GGAGTAACTTAGACTAGTGTCATATGC 58.923 40.741 0.00 0.00 45.20 3.14
354 356 6.154534 TGCATGACACCAGTCTAAGTTACTAT 59.845 38.462 0.00 0.00 45.20 2.12
357 359 7.627298 TGACACCAGTCTAAGTTACTATCTC 57.373 40.000 0.00 0.00 45.20 2.75
362 364 8.788806 CACCAGTCTAAGTTACTATCTCCATAG 58.211 40.741 0.00 0.00 38.45 2.23
432 434 7.558807 TGTCTTATAGACTCATTTTACCTCGGA 59.441 37.037 8.18 0.00 45.27 4.55
435 437 9.250624 CTTATAGACTCATTTTACCTCGGAAAG 57.749 37.037 0.00 0.00 0.00 2.62
437 439 4.000988 GACTCATTTTACCTCGGAAAGCA 58.999 43.478 0.00 0.00 0.00 3.91
443 445 4.546829 TTTACCTCGGAAAGCACTATGT 57.453 40.909 0.00 0.00 0.00 2.29
444 446 4.546829 TTACCTCGGAAAGCACTATGTT 57.453 40.909 0.00 0.00 0.00 2.71
445 447 5.664294 TTACCTCGGAAAGCACTATGTTA 57.336 39.130 0.00 0.00 0.00 2.41
446 448 3.858247 ACCTCGGAAAGCACTATGTTAC 58.142 45.455 0.00 0.00 0.00 2.50
447 449 3.259876 ACCTCGGAAAGCACTATGTTACA 59.740 43.478 0.00 0.00 0.00 2.41
448 450 3.865745 CCTCGGAAAGCACTATGTTACAG 59.134 47.826 0.00 0.00 0.00 2.74
449 451 4.495422 CTCGGAAAGCACTATGTTACAGT 58.505 43.478 0.00 0.00 0.00 3.55
450 452 5.393787 CCTCGGAAAGCACTATGTTACAGTA 60.394 44.000 0.00 0.00 0.00 2.74
451 453 6.028146 TCGGAAAGCACTATGTTACAGTAA 57.972 37.500 0.00 0.00 0.00 2.24
452 454 5.865552 TCGGAAAGCACTATGTTACAGTAAC 59.134 40.000 15.58 15.58 39.11 2.50
477 479 9.672673 ACATATTATGTTACTTCAAGCACTTCT 57.327 29.630 3.40 0.00 41.63 2.85
480 482 7.891183 TTATGTTACTTCAAGCACTTCTCTC 57.109 36.000 0.00 0.00 0.00 3.20
481 483 4.632153 TGTTACTTCAAGCACTTCTCTCC 58.368 43.478 0.00 0.00 0.00 3.71
482 484 4.345257 TGTTACTTCAAGCACTTCTCTCCT 59.655 41.667 0.00 0.00 0.00 3.69
483 485 3.676291 ACTTCAAGCACTTCTCTCCTC 57.324 47.619 0.00 0.00 0.00 3.71
484 486 2.968574 ACTTCAAGCACTTCTCTCCTCA 59.031 45.455 0.00 0.00 0.00 3.86
485 487 3.582208 ACTTCAAGCACTTCTCTCCTCAT 59.418 43.478 0.00 0.00 0.00 2.90
486 488 4.041444 ACTTCAAGCACTTCTCTCCTCATT 59.959 41.667 0.00 0.00 0.00 2.57
487 489 5.247110 ACTTCAAGCACTTCTCTCCTCATTA 59.753 40.000 0.00 0.00 0.00 1.90
488 490 5.745312 TCAAGCACTTCTCTCCTCATTAA 57.255 39.130 0.00 0.00 0.00 1.40
489 491 6.114187 TCAAGCACTTCTCTCCTCATTAAA 57.886 37.500 0.00 0.00 0.00 1.52
490 492 6.715280 TCAAGCACTTCTCTCCTCATTAAAT 58.285 36.000 0.00 0.00 0.00 1.40
491 493 7.851228 TCAAGCACTTCTCTCCTCATTAAATA 58.149 34.615 0.00 0.00 0.00 1.40
492 494 7.766278 TCAAGCACTTCTCTCCTCATTAAATAC 59.234 37.037 0.00 0.00 0.00 1.89
493 495 7.430760 AGCACTTCTCTCCTCATTAAATACT 57.569 36.000 0.00 0.00 0.00 2.12
494 496 7.856415 AGCACTTCTCTCCTCATTAAATACTT 58.144 34.615 0.00 0.00 0.00 2.24
495 497 7.768120 AGCACTTCTCTCCTCATTAAATACTTG 59.232 37.037 0.00 0.00 0.00 3.16
496 498 7.550906 GCACTTCTCTCCTCATTAAATACTTGT 59.449 37.037 0.00 0.00 0.00 3.16
497 499 9.092876 CACTTCTCTCCTCATTAAATACTTGTC 57.907 37.037 0.00 0.00 0.00 3.18
498 500 8.816894 ACTTCTCTCCTCATTAAATACTTGTCA 58.183 33.333 0.00 0.00 0.00 3.58
499 501 9.092876 CTTCTCTCCTCATTAAATACTTGTCAC 57.907 37.037 0.00 0.00 0.00 3.67
500 502 8.134202 TCTCTCCTCATTAAATACTTGTCACA 57.866 34.615 0.00 0.00 0.00 3.58
501 503 8.762645 TCTCTCCTCATTAAATACTTGTCACAT 58.237 33.333 0.00 0.00 0.00 3.21
553 555 6.758806 ACTACCTAAATTACCCCACTATGG 57.241 41.667 0.00 0.00 37.25 2.74
554 556 4.448720 ACCTAAATTACCCCACTATGGC 57.551 45.455 0.00 0.00 35.79 4.40
555 557 4.052199 ACCTAAATTACCCCACTATGGCT 58.948 43.478 0.00 0.00 35.79 4.75
556 558 5.229174 ACCTAAATTACCCCACTATGGCTA 58.771 41.667 0.00 0.00 35.79 3.93
557 559 5.309806 ACCTAAATTACCCCACTATGGCTAG 59.690 44.000 0.00 0.00 35.79 3.42
558 560 3.790089 AATTACCCCACTATGGCTAGC 57.210 47.619 6.04 6.04 35.79 3.42
559 561 1.430992 TTACCCCACTATGGCTAGCC 58.569 55.000 27.71 27.71 35.79 3.93
560 562 0.566176 TACCCCACTATGGCTAGCCT 59.434 55.000 33.07 20.80 35.79 4.58
561 563 1.056700 ACCCCACTATGGCTAGCCTG 61.057 60.000 33.07 22.44 35.79 4.85
562 564 0.764369 CCCCACTATGGCTAGCCTGA 60.764 60.000 33.07 19.90 35.79 3.86
563 565 0.394565 CCCACTATGGCTAGCCTGAC 59.605 60.000 33.07 8.57 35.79 3.51
564 566 0.394565 CCACTATGGCTAGCCTGACC 59.605 60.000 33.07 8.17 36.94 4.02
565 567 1.123077 CACTATGGCTAGCCTGACCA 58.877 55.000 33.07 14.38 37.99 4.02
566 568 1.069823 CACTATGGCTAGCCTGACCAG 59.930 57.143 33.07 22.44 36.78 4.00
567 569 0.034616 CTATGGCTAGCCTGACCAGC 59.965 60.000 33.07 5.85 36.78 4.85
570 572 3.956377 GCTAGCCTGACCAGCCTA 58.044 61.111 2.29 0.00 0.00 3.93
571 573 2.212327 GCTAGCCTGACCAGCCTAA 58.788 57.895 2.29 0.00 0.00 2.69
572 574 0.761802 GCTAGCCTGACCAGCCTAAT 59.238 55.000 2.29 0.00 0.00 1.73
573 575 1.270571 GCTAGCCTGACCAGCCTAATC 60.271 57.143 2.29 0.00 0.00 1.75
574 576 1.346068 CTAGCCTGACCAGCCTAATCC 59.654 57.143 0.00 0.00 0.00 3.01
575 577 1.149401 GCCTGACCAGCCTAATCCC 59.851 63.158 0.00 0.00 0.00 3.85
576 578 1.635817 GCCTGACCAGCCTAATCCCA 61.636 60.000 0.00 0.00 0.00 4.37
577 579 0.181350 CCTGACCAGCCTAATCCCAC 59.819 60.000 0.00 0.00 0.00 4.61
578 580 0.911769 CTGACCAGCCTAATCCCACA 59.088 55.000 0.00 0.00 0.00 4.17
579 581 0.911769 TGACCAGCCTAATCCCACAG 59.088 55.000 0.00 0.00 0.00 3.66
580 582 1.204146 GACCAGCCTAATCCCACAGA 58.796 55.000 0.00 0.00 0.00 3.41
581 583 1.559682 GACCAGCCTAATCCCACAGAA 59.440 52.381 0.00 0.00 0.00 3.02
582 584 1.992557 ACCAGCCTAATCCCACAGAAA 59.007 47.619 0.00 0.00 0.00 2.52
583 585 2.025887 ACCAGCCTAATCCCACAGAAAG 60.026 50.000 0.00 0.00 0.00 2.62
584 586 2.648059 CAGCCTAATCCCACAGAAAGG 58.352 52.381 0.00 0.00 35.65 3.11
585 587 2.239654 CAGCCTAATCCCACAGAAAGGA 59.760 50.000 0.00 0.00 34.87 3.36
586 588 2.919602 AGCCTAATCCCACAGAAAGGAA 59.080 45.455 0.00 0.00 34.87 3.36
587 589 3.017442 GCCTAATCCCACAGAAAGGAAC 58.983 50.000 0.00 0.00 34.87 3.62
588 590 3.561313 GCCTAATCCCACAGAAAGGAACA 60.561 47.826 0.00 0.00 34.87 3.18
589 591 4.265073 CCTAATCCCACAGAAAGGAACAG 58.735 47.826 0.00 0.00 34.87 3.16
590 592 2.206576 ATCCCACAGAAAGGAACAGC 57.793 50.000 0.00 0.00 35.30 4.40
591 593 0.843309 TCCCACAGAAAGGAACAGCA 59.157 50.000 0.00 0.00 0.00 4.41
592 594 0.954452 CCCACAGAAAGGAACAGCAC 59.046 55.000 0.00 0.00 0.00 4.40
593 595 0.954452 CCACAGAAAGGAACAGCACC 59.046 55.000 0.00 0.00 0.00 5.01
594 596 0.588252 CACAGAAAGGAACAGCACCG 59.412 55.000 0.00 0.00 0.00 4.94
623 625 0.599558 GCTGGCACTCAAATTCTGCA 59.400 50.000 0.00 0.00 32.20 4.41
666 668 2.671177 CCGCCACTTTCTGTCTGCG 61.671 63.158 0.00 0.00 42.84 5.18
715 717 0.883814 CGGCAGATCCTCCATGCTTC 60.884 60.000 4.15 0.00 39.88 3.86
794 796 0.868406 CTGCTTCCCGCCGAATAATC 59.132 55.000 0.00 0.00 38.05 1.75
795 797 0.534203 TGCTTCCCGCCGAATAATCC 60.534 55.000 0.00 0.00 38.05 3.01
796 798 0.534203 GCTTCCCGCCGAATAATCCA 60.534 55.000 0.00 0.00 0.00 3.41
797 799 1.882352 GCTTCCCGCCGAATAATCCAT 60.882 52.381 0.00 0.00 0.00 3.41
798 800 2.614481 GCTTCCCGCCGAATAATCCATA 60.614 50.000 0.00 0.00 0.00 2.74
799 801 3.670625 CTTCCCGCCGAATAATCCATAA 58.329 45.455 0.00 0.00 0.00 1.90
800 802 3.992943 TCCCGCCGAATAATCCATAAT 57.007 42.857 0.00 0.00 0.00 1.28
881 892 2.529389 GACTCACCCACCCACCCT 60.529 66.667 0.00 0.00 0.00 4.34
882 893 2.529389 ACTCACCCACCCACCCTC 60.529 66.667 0.00 0.00 0.00 4.30
884 895 1.847968 CTCACCCACCCACCCTCTT 60.848 63.158 0.00 0.00 0.00 2.85
893 904 2.456840 CACCCTCTTCCTCCCCCT 59.543 66.667 0.00 0.00 0.00 4.79
894 905 1.690985 CACCCTCTTCCTCCCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
897 908 2.652113 CCTCTTCCTCCCCCTCCCT 61.652 68.421 0.00 0.00 0.00 4.20
898 909 1.074850 CTCTTCCTCCCCCTCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
1330 1382 1.675641 GTGGAGCGGAATGGTGCTT 60.676 57.895 0.00 0.00 42.60 3.91
1338 1390 1.613437 CGGAATGGTGCTTGGTTCTTT 59.387 47.619 0.00 0.00 0.00 2.52
1351 1403 3.506398 TGGTTCTTTCAGAATTTCCCCC 58.494 45.455 0.00 0.00 36.50 5.40
1410 1472 1.106285 CCTCCCAGTTAGGCAAATGC 58.894 55.000 0.00 0.00 41.14 3.56
1434 1496 3.891422 TTAATGCCAATTTGCCTCCTG 57.109 42.857 0.00 0.00 0.00 3.86
1449 1511 3.228453 CCTCCTGGGATTGGATCATTTG 58.772 50.000 0.00 0.00 37.23 2.32
1531 1601 8.251383 TGTTAAAGGAGGGACTTGATAGATAG 57.749 38.462 0.00 0.00 41.55 2.08
1532 1602 8.065627 TGTTAAAGGAGGGACTTGATAGATAGA 58.934 37.037 0.00 0.00 41.55 1.98
1533 1603 9.095700 GTTAAAGGAGGGACTTGATAGATAGAT 57.904 37.037 0.00 0.00 41.55 1.98
1536 1606 8.658840 AAGGAGGGACTTGATAGATAGATAAC 57.341 38.462 0.00 0.00 41.55 1.89
1571 1641 2.834549 AGATCCGAATCTGAGTGTTGGT 59.165 45.455 0.00 0.00 40.84 3.67
1572 1642 2.455674 TCCGAATCTGAGTGTTGGTG 57.544 50.000 0.00 0.00 0.00 4.17
1620 1690 5.179533 GGATCCAGTCTAAGTTTGAAGGTC 58.820 45.833 6.95 5.00 0.00 3.85
1756 3926 7.572759 TCGCAAAGTAAAGTGACTCTAAATTG 58.427 34.615 0.00 0.00 0.00 2.32
1760 3930 6.952935 AGTAAAGTGACTCTAAATTGAGCG 57.047 37.500 0.00 0.00 37.58 5.03
1763 3933 1.666189 GTGACTCTAAATTGAGCGGCC 59.334 52.381 0.00 0.00 37.58 6.13
1877 4057 4.297510 CATTTTCCAAAGTGAATGCGACA 58.702 39.130 0.00 0.00 0.00 4.35
1990 4170 8.426881 TTTCCCTTTATTAGTTTGTTTTGTGC 57.573 30.769 0.00 0.00 0.00 4.57
2020 4200 5.747197 GGTGTGTTATAACGGTAGACATCAG 59.253 44.000 10.92 0.00 0.00 2.90
2021 4201 5.747197 GTGTGTTATAACGGTAGACATCAGG 59.253 44.000 10.92 0.00 0.00 3.86
2032 4212 4.401519 GGTAGACATCAGGTGTAAGTAGCA 59.598 45.833 0.00 0.00 42.36 3.49
2034 4214 5.016051 AGACATCAGGTGTAAGTAGCATG 57.984 43.478 0.00 0.00 42.36 4.06
2041 4221 4.997395 CAGGTGTAAGTAGCATGTTCTGTT 59.003 41.667 0.00 0.00 0.00 3.16
2051 4231 0.896940 ATGTTCTGTTGCTGGGCCTG 60.897 55.000 4.53 5.32 0.00 4.85
2060 4240 0.541530 TGCTGGGCCTGCAAACATTA 60.542 50.000 32.45 10.28 35.52 1.90
2061 4241 0.108662 GCTGGGCCTGCAAACATTAC 60.109 55.000 28.08 0.00 0.00 1.89
2072 4253 5.403766 CCTGCAAACATTACGCATAACAAAA 59.596 36.000 0.00 0.00 34.63 2.44
2073 4254 6.399880 CCTGCAAACATTACGCATAACAAAAG 60.400 38.462 0.00 0.00 34.63 2.27
2180 4362 5.473796 TTGTGGTGTTAAACGAAGAGTTC 57.526 39.130 0.00 0.00 43.37 3.01
2181 4363 3.872771 TGTGGTGTTAAACGAAGAGTTCC 59.127 43.478 0.00 0.00 43.37 3.62
2186 4368 4.573607 GTGTTAAACGAAGAGTTCCCTGTT 59.426 41.667 0.00 0.00 43.37 3.16
2270 4465 7.558081 GGAAAATGAAAGGGAGATTAGCTTAGT 59.442 37.037 0.00 0.00 0.00 2.24
2304 4499 3.536956 TGAGGTGGGAGTAAATAAGCG 57.463 47.619 0.00 0.00 0.00 4.68
2328 4564 5.674933 GGAAATCCCATCGTCTGATTTAC 57.325 43.478 0.00 0.00 38.47 2.01
2345 4581 7.180229 TCTGATTTACTCTGGAGTACAATTCCA 59.820 37.037 9.65 2.62 43.02 3.53
2374 4610 8.784043 ACGATAGCTGACAAAAATTAACTTCTT 58.216 29.630 0.00 0.00 42.67 2.52
2411 4647 6.457528 GCCTCAAAATACTCAATCTGTACTGC 60.458 42.308 0.00 0.00 0.00 4.40
2450 4686 8.623903 GTGATTTGAGATATTGCCAGAAATGTA 58.376 33.333 0.00 0.00 0.00 2.29
2563 4799 7.978925 TGATCCTTCTATTTTATCTCCCCTTC 58.021 38.462 0.00 0.00 0.00 3.46
2566 4802 6.857222 TCCTTCTATTTTATCTCCCCTTCCAT 59.143 38.462 0.00 0.00 0.00 3.41
2801 5038 5.353394 TCTAATTGTAGGGAGCGTCATTT 57.647 39.130 0.00 0.00 0.00 2.32
2990 5235 1.675714 CCATTAACTCTGGCGCTGTCA 60.676 52.381 7.64 0.00 0.00 3.58
3084 5329 2.232941 CTCTTTTGATGTTGGGCAGCAT 59.767 45.455 0.00 0.00 43.58 3.79
3086 5331 2.747396 TTTGATGTTGGGCAGCATTC 57.253 45.000 0.00 0.00 43.58 2.67
3087 5332 1.630223 TTGATGTTGGGCAGCATTCA 58.370 45.000 0.00 0.00 43.58 2.57
3088 5333 1.855295 TGATGTTGGGCAGCATTCAT 58.145 45.000 0.00 0.00 38.74 2.57
3089 5334 1.478916 TGATGTTGGGCAGCATTCATG 59.521 47.619 0.00 0.00 38.74 3.07
3256 5501 8.948631 AGAAGATGAACTATTTTCTATTCGCA 57.051 30.769 0.00 0.00 38.17 5.10
3257 5502 9.039870 AGAAGATGAACTATTTTCTATTCGCAG 57.960 33.333 0.00 0.00 38.17 5.18
3655 5908 5.221441 GCCTTTTGCGGAAATATAGGGAAAT 60.221 40.000 17.19 0.00 0.00 2.17
3661 5914 5.001232 GCGGAAATATAGGGAAATACTGCA 58.999 41.667 0.00 0.00 0.00 4.41
3792 6045 4.638865 ACTCAAACTGTGGAAACAGGTAAC 59.361 41.667 10.40 0.00 44.46 2.50
3833 6086 3.305608 CCCTTCATTGCTTTCAACCAGAC 60.306 47.826 0.00 0.00 34.60 3.51
3946 6228 2.095263 GCGCCAGTTTAACACATGATGT 60.095 45.455 0.00 0.00 46.42 3.06
3956 6238 1.303561 ACATGATGTGGGCTTGCGT 60.304 52.632 0.00 0.00 0.00 5.24
3992 6274 5.682862 CCGAACTATAATCATGTTTGCTTGC 59.317 40.000 0.00 0.00 0.00 4.01
4137 6419 1.876714 CCTACGGTTCCGTGCATCG 60.877 63.158 24.37 9.06 42.91 3.84
4161 6443 8.862085 TCGTATGATATTTTACCATCTACACCA 58.138 33.333 0.00 0.00 0.00 4.17
4210 6492 8.777413 CATTACATTCACATTGAGGTACATAGG 58.223 37.037 0.00 0.00 0.00 2.57
4279 6561 4.265073 AGTGTACCATTTCTGAGCCATTC 58.735 43.478 0.00 0.00 0.00 2.67
4280 6562 4.018960 AGTGTACCATTTCTGAGCCATTCT 60.019 41.667 0.00 0.00 0.00 2.40
4305 6605 8.950007 TGGATACTTCTTAAAACCCTCAAATT 57.050 30.769 0.00 0.00 37.61 1.82
4347 6647 3.181461 CCTGCGGATCCAGAAGTATTTCT 60.181 47.826 13.41 0.00 44.45 2.52
4348 6648 4.446371 CTGCGGATCCAGAAGTATTTCTT 58.554 43.478 13.41 0.00 41.71 2.52
4363 6663 4.749048 ATTTCTTCCTCTCCAGGGTTTT 57.251 40.909 0.00 0.00 40.80 2.43
4385 6685 7.504924 TTTGTTTTGAGATGGTCGTATTTCT 57.495 32.000 0.00 0.00 0.00 2.52
4453 6762 8.676401 GTTTGTACACAAAAAGTCTAACCCTTA 58.324 33.333 9.01 0.00 46.08 2.69
4490 6800 1.133253 CATGCTGTGTTCGGAAGCG 59.867 57.895 0.00 0.00 39.88 4.68
4601 6923 3.241067 ACATGGAAATGTCATTGCTGC 57.759 42.857 3.47 0.00 0.00 5.25
4685 7055 2.040009 AACATACGCCATCTCCCCCG 62.040 60.000 0.00 0.00 0.00 5.73
4705 7075 1.537202 GAAGCACAGTAGCCAACAAGG 59.463 52.381 0.00 0.00 41.84 3.61
4746 7178 8.828029 GCTTTGTGCAGATTATTTTCTACTAC 57.172 34.615 0.00 0.00 42.31 2.73
4747 7179 8.669243 GCTTTGTGCAGATTATTTTCTACTACT 58.331 33.333 0.00 0.00 42.31 2.57
4753 7185 9.982651 TGCAGATTATTTTCTACTACTACATCC 57.017 33.333 0.00 0.00 0.00 3.51
4754 7186 9.425577 GCAGATTATTTTCTACTACTACATCCC 57.574 37.037 0.00 0.00 0.00 3.85
4789 7221 3.334583 TTTTTGATGAGACGGAGGGAG 57.665 47.619 0.00 0.00 0.00 4.30
4790 7222 1.938585 TTTGATGAGACGGAGGGAGT 58.061 50.000 0.00 0.00 0.00 3.85
4791 7223 2.820728 TTGATGAGACGGAGGGAGTA 57.179 50.000 0.00 0.00 0.00 2.59
4804 7236 4.347607 GGAGGGAGTAGGTTACAACAGTA 58.652 47.826 0.00 0.00 0.00 2.74
4965 7398 0.321671 TCTCTTCCTCTTTGGTGGCG 59.678 55.000 0.00 0.00 37.07 5.69
4970 7403 2.032528 CTCTTTGGTGGCGGCAGA 59.967 61.111 13.91 4.57 0.00 4.26
5049 7483 8.380099 TGTACTTTCTAACAATCACAAGGGTAT 58.620 33.333 0.00 0.00 0.00 2.73
5079 7513 9.607988 AAAATGGATAATAGACATGACACGTAA 57.392 29.630 0.00 0.00 0.00 3.18
5085 7519 3.473093 AGACATGACACGTAACTCTCG 57.527 47.619 0.00 0.00 0.00 4.04
5087 7521 3.125487 AGACATGACACGTAACTCTCGAG 59.875 47.826 5.93 5.93 0.00 4.04
5089 7523 2.963498 TGACACGTAACTCTCGAGTG 57.037 50.000 13.13 12.94 41.58 3.51
5091 7525 2.615447 TGACACGTAACTCTCGAGTGTT 59.385 45.455 29.38 29.38 44.79 3.32
5092 7526 3.224750 GACACGTAACTCTCGAGTGTTC 58.775 50.000 30.10 21.15 44.79 3.18
5093 7527 2.877168 ACACGTAACTCTCGAGTGTTCT 59.123 45.455 30.10 14.89 42.56 3.01
5094 7528 3.059051 ACACGTAACTCTCGAGTGTTCTC 60.059 47.826 30.10 22.91 42.56 2.87
5095 7529 3.059120 CACGTAACTCTCGAGTGTTCTCA 60.059 47.826 30.10 14.85 41.58 3.27
5096 7530 3.562973 ACGTAACTCTCGAGTGTTCTCAA 59.437 43.478 30.10 14.53 41.58 3.02
5097 7531 4.152526 CGTAACTCTCGAGTGTTCTCAAG 58.847 47.826 30.10 15.36 41.58 3.02
5098 7532 4.083961 CGTAACTCTCGAGTGTTCTCAAGA 60.084 45.833 30.10 13.57 41.58 3.02
5099 7533 4.920640 AACTCTCGAGTGTTCTCAAGAA 57.079 40.909 23.45 0.00 41.58 2.52
5100 7534 4.920640 ACTCTCGAGTGTTCTCAAGAAA 57.079 40.909 14.16 0.00 40.75 2.52
5101 7535 5.461032 ACTCTCGAGTGTTCTCAAGAAAT 57.539 39.130 14.16 0.00 40.75 2.17
5102 7536 5.465935 ACTCTCGAGTGTTCTCAAGAAATC 58.534 41.667 14.16 0.00 40.75 2.17
5103 7537 4.476862 TCTCGAGTGTTCTCAAGAAATCG 58.523 43.478 13.13 13.11 40.44 3.34
5104 7538 2.987149 TCGAGTGTTCTCAAGAAATCGC 59.013 45.455 13.93 3.38 40.44 4.58
5105 7539 2.222376 CGAGTGTTCTCAAGAAATCGCG 60.222 50.000 0.00 0.00 40.44 5.87
5106 7540 2.731976 GAGTGTTCTCAAGAAATCGCGT 59.268 45.455 5.77 0.00 40.18 6.01
5107 7541 3.909430 AGTGTTCTCAAGAAATCGCGTA 58.091 40.909 5.77 0.00 35.58 4.42
5108 7542 4.304110 AGTGTTCTCAAGAAATCGCGTAA 58.696 39.130 5.77 0.00 35.58 3.18
5109 7543 4.748102 AGTGTTCTCAAGAAATCGCGTAAA 59.252 37.500 5.77 0.00 35.58 2.01
5110 7544 4.839174 GTGTTCTCAAGAAATCGCGTAAAC 59.161 41.667 5.77 0.00 35.58 2.01
5111 7545 4.508492 TGTTCTCAAGAAATCGCGTAAACA 59.492 37.500 5.77 0.84 35.58 2.83
5112 7546 5.006844 TGTTCTCAAGAAATCGCGTAAACAA 59.993 36.000 5.77 0.00 35.58 2.83
5113 7547 5.264060 TCTCAAGAAATCGCGTAAACAAG 57.736 39.130 5.77 0.00 0.00 3.16
5114 7548 4.986034 TCTCAAGAAATCGCGTAAACAAGA 59.014 37.500 5.77 0.00 0.00 3.02
5115 7549 5.464057 TCTCAAGAAATCGCGTAAACAAGAA 59.536 36.000 5.77 0.00 0.00 2.52
5116 7550 6.147164 TCTCAAGAAATCGCGTAAACAAGAAT 59.853 34.615 5.77 0.00 0.00 2.40
5117 7551 7.329962 TCTCAAGAAATCGCGTAAACAAGAATA 59.670 33.333 5.77 0.00 0.00 1.75
5118 7552 7.970384 TCAAGAAATCGCGTAAACAAGAATAT 58.030 30.769 5.77 0.00 0.00 1.28
5119 7553 8.447833 TCAAGAAATCGCGTAAACAAGAATATT 58.552 29.630 5.77 0.00 0.00 1.28
5120 7554 9.697250 CAAGAAATCGCGTAAACAAGAATATTA 57.303 29.630 5.77 0.00 0.00 0.98
5121 7555 9.916397 AAGAAATCGCGTAAACAAGAATATTAG 57.084 29.630 5.77 0.00 0.00 1.73
5122 7556 8.062448 AGAAATCGCGTAAACAAGAATATTAGC 58.938 33.333 5.77 0.00 0.00 3.09
5123 7557 7.478520 AATCGCGTAAACAAGAATATTAGCT 57.521 32.000 5.77 0.00 0.00 3.32
5124 7558 8.583810 AATCGCGTAAACAAGAATATTAGCTA 57.416 30.769 5.77 0.00 0.00 3.32
5125 7559 7.618964 TCGCGTAAACAAGAATATTAGCTAG 57.381 36.000 5.77 0.00 0.00 3.42
5126 7560 6.639686 TCGCGTAAACAAGAATATTAGCTAGG 59.360 38.462 5.77 0.00 0.00 3.02
5127 7561 6.591261 GCGTAAACAAGAATATTAGCTAGGC 58.409 40.000 0.00 0.00 0.00 3.93
5128 7562 6.424207 GCGTAAACAAGAATATTAGCTAGGCT 59.576 38.462 0.00 0.00 43.41 4.58
5129 7563 7.597743 GCGTAAACAAGAATATTAGCTAGGCTA 59.402 37.037 0.00 0.00 40.44 3.93
5130 7564 9.640963 CGTAAACAAGAATATTAGCTAGGCTAT 57.359 33.333 0.00 0.00 41.01 2.97
5134 7568 9.606631 AACAAGAATATTAGCTAGGCTATATGC 57.393 33.333 0.00 0.00 41.01 3.14
5135 7569 8.986991 ACAAGAATATTAGCTAGGCTATATGCT 58.013 33.333 11.02 11.02 41.01 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.094442 TGCGTAGTGATTGGATGACGAA 60.094 45.455 0.00 0.00 32.20 3.85
1 2 1.474879 TGCGTAGTGATTGGATGACGA 59.525 47.619 0.00 0.00 32.20 4.20
2 3 1.588404 GTGCGTAGTGATTGGATGACG 59.412 52.381 0.00 0.00 0.00 4.35
3 4 2.348666 GTGTGCGTAGTGATTGGATGAC 59.651 50.000 0.00 0.00 0.00 3.06
4 5 2.233676 AGTGTGCGTAGTGATTGGATGA 59.766 45.455 0.00 0.00 0.00 2.92
6 7 4.181578 GTTAGTGTGCGTAGTGATTGGAT 58.818 43.478 0.00 0.00 0.00 3.41
7 8 3.581755 GTTAGTGTGCGTAGTGATTGGA 58.418 45.455 0.00 0.00 0.00 3.53
8 9 2.344441 CGTTAGTGTGCGTAGTGATTGG 59.656 50.000 0.00 0.00 0.00 3.16
9 10 3.239254 TCGTTAGTGTGCGTAGTGATTG 58.761 45.455 0.00 0.00 0.00 2.67
10 11 3.564235 TCGTTAGTGTGCGTAGTGATT 57.436 42.857 0.00 0.00 0.00 2.57
11 12 3.564235 TTCGTTAGTGTGCGTAGTGAT 57.436 42.857 0.00 0.00 0.00 3.06
12 13 3.564235 ATTCGTTAGTGTGCGTAGTGA 57.436 42.857 0.00 0.00 0.00 3.41
13 14 4.264614 CCTTATTCGTTAGTGTGCGTAGTG 59.735 45.833 0.00 0.00 0.00 2.74
14 15 4.418392 CCTTATTCGTTAGTGTGCGTAGT 58.582 43.478 0.00 0.00 0.00 2.73
15 16 3.242248 GCCTTATTCGTTAGTGTGCGTAG 59.758 47.826 0.00 0.00 0.00 3.51
16 17 3.119388 AGCCTTATTCGTTAGTGTGCGTA 60.119 43.478 0.00 0.00 0.00 4.42
17 18 1.997606 GCCTTATTCGTTAGTGTGCGT 59.002 47.619 0.00 0.00 0.00 5.24
18 19 2.268298 AGCCTTATTCGTTAGTGTGCG 58.732 47.619 0.00 0.00 0.00 5.34
19 20 4.430908 ACTAGCCTTATTCGTTAGTGTGC 58.569 43.478 0.00 0.00 0.00 4.57
20 21 5.647589 TGACTAGCCTTATTCGTTAGTGTG 58.352 41.667 0.00 0.00 0.00 3.82
21 22 5.909621 TGACTAGCCTTATTCGTTAGTGT 57.090 39.130 0.00 0.00 0.00 3.55
22 23 8.916654 CATTATGACTAGCCTTATTCGTTAGTG 58.083 37.037 0.00 0.00 0.00 2.74
23 24 8.088981 CCATTATGACTAGCCTTATTCGTTAGT 58.911 37.037 0.00 0.00 0.00 2.24
24 25 7.545965 CCCATTATGACTAGCCTTATTCGTTAG 59.454 40.741 0.00 0.00 0.00 2.34
25 26 7.233962 TCCCATTATGACTAGCCTTATTCGTTA 59.766 37.037 0.00 0.00 0.00 3.18
26 27 6.042781 TCCCATTATGACTAGCCTTATTCGTT 59.957 38.462 0.00 0.00 0.00 3.85
27 28 5.542635 TCCCATTATGACTAGCCTTATTCGT 59.457 40.000 0.00 0.00 0.00 3.85
28 29 6.037786 TCCCATTATGACTAGCCTTATTCG 57.962 41.667 0.00 0.00 0.00 3.34
29 30 7.010339 ACTCCCATTATGACTAGCCTTATTC 57.990 40.000 0.00 0.00 0.00 1.75
30 31 8.376270 GTTACTCCCATTATGACTAGCCTTATT 58.624 37.037 0.00 0.00 0.00 1.40
31 32 7.735321 AGTTACTCCCATTATGACTAGCCTTAT 59.265 37.037 0.00 0.00 0.00 1.73
32 33 7.073854 AGTTACTCCCATTATGACTAGCCTTA 58.926 38.462 0.00 0.00 0.00 2.69
33 34 5.905913 AGTTACTCCCATTATGACTAGCCTT 59.094 40.000 0.00 0.00 0.00 4.35
41 42 9.650714 TTACTAGCTAAGTTACTCCCATTATGA 57.349 33.333 0.00 0.00 39.80 2.15
46 47 7.916077 ATGTTACTAGCTAAGTTACTCCCAT 57.084 36.000 0.00 0.00 38.33 4.00
48 49 7.369607 GCTATGTTACTAGCTAAGTTACTCCC 58.630 42.308 0.00 0.00 40.79 4.30
151 152 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
154 155 6.030548 TCTTGTAGACTCATCTTGTCTTGG 57.969 41.667 1.67 0.00 41.45 3.61
238 240 3.740631 TGCATATGACACTAGCCTGAG 57.259 47.619 6.97 0.00 0.00 3.35
240 242 3.999046 TCATGCATATGACACTAGCCTG 58.001 45.455 6.97 0.00 38.37 4.85
273 275 2.366916 CAGCCTCATAGTGGGGAGTAAG 59.633 54.545 0.00 0.00 41.85 2.34
328 330 3.988976 ACTTAGACTGGTGTCATGCAT 57.011 42.857 0.00 0.00 45.20 3.96
330 332 4.822026 AGTAACTTAGACTGGTGTCATGC 58.178 43.478 0.00 0.00 45.20 4.06
331 333 8.001881 AGATAGTAACTTAGACTGGTGTCATG 57.998 38.462 0.00 0.00 45.20 3.07
407 409 7.938715 TCCGAGGTAAAATGAGTCTATAAGAC 58.061 38.462 0.00 0.00 45.38 3.01
422 424 4.546829 ACATAGTGCTTTCCGAGGTAAA 57.453 40.909 0.00 0.00 0.00 2.01
425 427 3.259876 TGTAACATAGTGCTTTCCGAGGT 59.740 43.478 0.00 0.00 0.00 3.85
426 428 3.857052 TGTAACATAGTGCTTTCCGAGG 58.143 45.455 0.00 0.00 0.00 4.63
429 431 5.636121 TGTTACTGTAACATAGTGCTTTCCG 59.364 40.000 25.14 0.00 43.23 4.30
454 456 9.587772 GAGAGAAGTGCTTGAAGTAACATAATA 57.412 33.333 0.00 0.00 0.00 0.98
455 457 7.550906 GGAGAGAAGTGCTTGAAGTAACATAAT 59.449 37.037 0.00 0.00 0.00 1.28
456 458 6.874134 GGAGAGAAGTGCTTGAAGTAACATAA 59.126 38.462 0.00 0.00 0.00 1.90
457 459 6.211584 AGGAGAGAAGTGCTTGAAGTAACATA 59.788 38.462 0.00 0.00 0.00 2.29
458 460 5.012561 AGGAGAGAAGTGCTTGAAGTAACAT 59.987 40.000 0.00 0.00 0.00 2.71
459 461 4.345257 AGGAGAGAAGTGCTTGAAGTAACA 59.655 41.667 0.00 0.00 0.00 2.41
460 462 4.888917 AGGAGAGAAGTGCTTGAAGTAAC 58.111 43.478 0.00 0.00 0.00 2.50
461 463 4.588951 TGAGGAGAGAAGTGCTTGAAGTAA 59.411 41.667 0.00 0.00 0.00 2.24
462 464 4.152647 TGAGGAGAGAAGTGCTTGAAGTA 58.847 43.478 0.00 0.00 0.00 2.24
463 465 2.968574 TGAGGAGAGAAGTGCTTGAAGT 59.031 45.455 0.00 0.00 0.00 3.01
464 466 3.674528 TGAGGAGAGAAGTGCTTGAAG 57.325 47.619 0.00 0.00 0.00 3.02
465 467 4.630644 AATGAGGAGAGAAGTGCTTGAA 57.369 40.909 0.00 0.00 0.00 2.69
466 468 5.745312 TTAATGAGGAGAGAAGTGCTTGA 57.255 39.130 0.00 0.00 0.00 3.02
467 469 6.998968 ATTTAATGAGGAGAGAAGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
468 470 7.856415 AGTATTTAATGAGGAGAGAAGTGCTT 58.144 34.615 0.00 0.00 0.00 3.91
469 471 7.430760 AGTATTTAATGAGGAGAGAAGTGCT 57.569 36.000 0.00 0.00 0.00 4.40
470 472 7.550906 ACAAGTATTTAATGAGGAGAGAAGTGC 59.449 37.037 0.00 0.00 0.00 4.40
471 473 9.092876 GACAAGTATTTAATGAGGAGAGAAGTG 57.907 37.037 0.00 0.00 0.00 3.16
472 474 8.816894 TGACAAGTATTTAATGAGGAGAGAAGT 58.183 33.333 0.00 0.00 0.00 3.01
473 475 9.092876 GTGACAAGTATTTAATGAGGAGAGAAG 57.907 37.037 0.00 0.00 0.00 2.85
474 476 8.593679 TGTGACAAGTATTTAATGAGGAGAGAA 58.406 33.333 0.00 0.00 0.00 2.87
475 477 8.134202 TGTGACAAGTATTTAATGAGGAGAGA 57.866 34.615 0.00 0.00 0.00 3.10
476 478 8.954950 ATGTGACAAGTATTTAATGAGGAGAG 57.045 34.615 0.00 0.00 0.00 3.20
527 529 8.887393 CCATAGTGGGGTAATTTAGGTAGTAAT 58.113 37.037 0.00 0.00 32.67 1.89
528 530 7.202121 GCCATAGTGGGGTAATTTAGGTAGTAA 60.202 40.741 0.00 0.00 38.19 2.24
529 531 6.270695 GCCATAGTGGGGTAATTTAGGTAGTA 59.729 42.308 0.00 0.00 38.19 1.82
530 532 5.072736 GCCATAGTGGGGTAATTTAGGTAGT 59.927 44.000 0.00 0.00 38.19 2.73
531 533 5.309806 AGCCATAGTGGGGTAATTTAGGTAG 59.690 44.000 0.00 0.00 38.19 3.18
532 534 5.229174 AGCCATAGTGGGGTAATTTAGGTA 58.771 41.667 0.00 0.00 38.19 3.08
533 535 4.052199 AGCCATAGTGGGGTAATTTAGGT 58.948 43.478 0.00 0.00 38.19 3.08
534 536 4.724279 AGCCATAGTGGGGTAATTTAGG 57.276 45.455 0.00 0.00 38.19 2.69
535 537 5.246307 GCTAGCCATAGTGGGGTAATTTAG 58.754 45.833 2.29 0.00 40.18 1.85
536 538 4.042435 GGCTAGCCATAGTGGGGTAATTTA 59.958 45.833 29.33 0.00 40.18 1.40
537 539 3.181433 GGCTAGCCATAGTGGGGTAATTT 60.181 47.826 29.33 0.00 40.18 1.82
538 540 2.375509 GGCTAGCCATAGTGGGGTAATT 59.624 50.000 29.33 0.00 40.18 1.40
539 541 1.985895 GGCTAGCCATAGTGGGGTAAT 59.014 52.381 29.33 0.00 40.18 1.89
540 542 1.061657 AGGCTAGCCATAGTGGGGTAA 60.062 52.381 34.70 0.00 40.18 2.85
541 543 0.566176 AGGCTAGCCATAGTGGGGTA 59.434 55.000 34.70 0.00 38.19 3.69
542 544 1.056700 CAGGCTAGCCATAGTGGGGT 61.057 60.000 34.70 8.63 38.19 4.95
543 545 0.764369 TCAGGCTAGCCATAGTGGGG 60.764 60.000 34.70 13.23 38.19 4.96
544 546 0.394565 GTCAGGCTAGCCATAGTGGG 59.605 60.000 34.70 14.56 38.19 4.61
545 547 0.394565 GGTCAGGCTAGCCATAGTGG 59.605 60.000 34.70 16.23 41.55 4.00
546 548 1.069823 CTGGTCAGGCTAGCCATAGTG 59.930 57.143 34.70 23.51 38.92 2.74
547 549 1.418334 CTGGTCAGGCTAGCCATAGT 58.582 55.000 34.70 12.31 38.92 2.12
548 550 0.034616 GCTGGTCAGGCTAGCCATAG 59.965 60.000 34.70 23.07 44.70 2.23
549 551 2.136791 GCTGGTCAGGCTAGCCATA 58.863 57.895 34.70 19.63 44.70 2.74
550 552 2.914289 GCTGGTCAGGCTAGCCAT 59.086 61.111 34.70 17.45 44.70 4.40
558 560 0.181350 GTGGGATTAGGCTGGTCAGG 59.819 60.000 0.00 0.00 0.00 3.86
559 561 0.911769 TGTGGGATTAGGCTGGTCAG 59.088 55.000 0.00 0.00 0.00 3.51
560 562 0.911769 CTGTGGGATTAGGCTGGTCA 59.088 55.000 0.00 0.00 0.00 4.02
561 563 1.204146 TCTGTGGGATTAGGCTGGTC 58.796 55.000 0.00 0.00 0.00 4.02
562 564 1.668826 TTCTGTGGGATTAGGCTGGT 58.331 50.000 0.00 0.00 0.00 4.00
563 565 2.648059 CTTTCTGTGGGATTAGGCTGG 58.352 52.381 0.00 0.00 0.00 4.85
564 566 2.239654 TCCTTTCTGTGGGATTAGGCTG 59.760 50.000 0.00 0.00 0.00 4.85
565 567 2.562296 TCCTTTCTGTGGGATTAGGCT 58.438 47.619 0.00 0.00 0.00 4.58
566 568 3.017442 GTTCCTTTCTGTGGGATTAGGC 58.983 50.000 0.00 0.00 0.00 3.93
567 569 4.265073 CTGTTCCTTTCTGTGGGATTAGG 58.735 47.826 0.00 0.00 0.00 2.69
568 570 3.691609 GCTGTTCCTTTCTGTGGGATTAG 59.308 47.826 0.00 0.00 0.00 1.73
569 571 3.073798 TGCTGTTCCTTTCTGTGGGATTA 59.926 43.478 0.00 0.00 0.00 1.75
570 572 2.158475 TGCTGTTCCTTTCTGTGGGATT 60.158 45.455 0.00 0.00 0.00 3.01
571 573 1.425066 TGCTGTTCCTTTCTGTGGGAT 59.575 47.619 0.00 0.00 0.00 3.85
572 574 0.843309 TGCTGTTCCTTTCTGTGGGA 59.157 50.000 0.00 0.00 0.00 4.37
573 575 0.954452 GTGCTGTTCCTTTCTGTGGG 59.046 55.000 0.00 0.00 0.00 4.61
574 576 0.954452 GGTGCTGTTCCTTTCTGTGG 59.046 55.000 0.00 0.00 0.00 4.17
575 577 0.588252 CGGTGCTGTTCCTTTCTGTG 59.412 55.000 0.00 0.00 0.00 3.66
576 578 0.468226 TCGGTGCTGTTCCTTTCTGT 59.532 50.000 0.00 0.00 0.00 3.41
577 579 1.593196 TTCGGTGCTGTTCCTTTCTG 58.407 50.000 0.00 0.00 0.00 3.02
578 580 2.341846 TTTCGGTGCTGTTCCTTTCT 57.658 45.000 0.00 0.00 0.00 2.52
579 581 2.543031 GGTTTTCGGTGCTGTTCCTTTC 60.543 50.000 0.00 0.00 0.00 2.62
580 582 1.407618 GGTTTTCGGTGCTGTTCCTTT 59.592 47.619 0.00 0.00 0.00 3.11
581 583 1.029681 GGTTTTCGGTGCTGTTCCTT 58.970 50.000 0.00 0.00 0.00 3.36
582 584 0.106918 TGGTTTTCGGTGCTGTTCCT 60.107 50.000 0.00 0.00 0.00 3.36
583 585 0.741915 TTGGTTTTCGGTGCTGTTCC 59.258 50.000 0.00 0.00 0.00 3.62
584 586 2.459934 CTTTGGTTTTCGGTGCTGTTC 58.540 47.619 0.00 0.00 0.00 3.18
585 587 1.470805 GCTTTGGTTTTCGGTGCTGTT 60.471 47.619 0.00 0.00 0.00 3.16
586 588 0.102300 GCTTTGGTTTTCGGTGCTGT 59.898 50.000 0.00 0.00 0.00 4.40
587 589 0.385390 AGCTTTGGTTTTCGGTGCTG 59.615 50.000 0.00 0.00 0.00 4.41
588 590 0.385390 CAGCTTTGGTTTTCGGTGCT 59.615 50.000 0.00 0.00 0.00 4.40
589 591 0.597377 CCAGCTTTGGTTTTCGGTGC 60.597 55.000 0.00 0.00 0.00 5.01
590 592 0.597377 GCCAGCTTTGGTTTTCGGTG 60.597 55.000 0.00 0.00 0.00 4.94
591 593 1.040339 TGCCAGCTTTGGTTTTCGGT 61.040 50.000 0.00 0.00 0.00 4.69
592 594 0.597377 GTGCCAGCTTTGGTTTTCGG 60.597 55.000 0.00 0.00 0.00 4.30
593 595 0.385390 AGTGCCAGCTTTGGTTTTCG 59.615 50.000 0.00 0.00 0.00 3.46
594 596 1.408702 TGAGTGCCAGCTTTGGTTTTC 59.591 47.619 0.00 0.00 0.00 2.29
623 625 3.865011 TTGATTGTGTTTGTGTGCACT 57.135 38.095 19.41 0.00 36.63 4.40
733 735 1.152839 GGAGGAGGAGGAGAGGTCG 60.153 68.421 0.00 0.00 0.00 4.79
786 788 8.674607 GGGGCTACTTTTATTATGGATTATTCG 58.325 37.037 0.00 0.00 0.00 3.34
794 796 4.360951 TCGGGGGCTACTTTTATTATGG 57.639 45.455 0.00 0.00 0.00 2.74
795 797 7.989416 TTTATCGGGGGCTACTTTTATTATG 57.011 36.000 0.00 0.00 0.00 1.90
796 798 7.173735 CGTTTTATCGGGGGCTACTTTTATTAT 59.826 37.037 0.00 0.00 0.00 1.28
797 799 6.482973 CGTTTTATCGGGGGCTACTTTTATTA 59.517 38.462 0.00 0.00 0.00 0.98
798 800 5.297527 CGTTTTATCGGGGGCTACTTTTATT 59.702 40.000 0.00 0.00 0.00 1.40
799 801 4.818005 CGTTTTATCGGGGGCTACTTTTAT 59.182 41.667 0.00 0.00 0.00 1.40
800 802 4.190772 CGTTTTATCGGGGGCTACTTTTA 58.809 43.478 0.00 0.00 0.00 1.52
877 888 2.788589 GAGGGGGAGGAAGAGGGT 59.211 66.667 0.00 0.00 0.00 4.34
881 892 2.647949 GGAGGGAGGGGGAGGAAGA 61.648 68.421 0.00 0.00 0.00 2.87
882 893 2.040359 GGAGGGAGGGGGAGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
893 904 1.238896 AGGGAGGAAGATGGGAGGGA 61.239 60.000 0.00 0.00 0.00 4.20
894 905 0.568192 TAGGGAGGAAGATGGGAGGG 59.432 60.000 0.00 0.00 0.00 4.30
1351 1403 3.512724 ACTTGCCCAATTTCATGAGAAGG 59.487 43.478 0.00 0.00 34.71 3.46
1410 1472 2.929398 GAGGCAAATTGGCATTAAACCG 59.071 45.455 21.49 0.00 46.46 4.44
1434 1496 1.338020 GGTCGCAAATGATCCAATCCC 59.662 52.381 0.00 0.00 0.00 3.85
1449 1511 1.521423 GTTACACGCATAGATGGTCGC 59.479 52.381 0.00 0.00 0.00 5.19
1629 1699 8.447053 CAAACCCGGTGGAAATTTAAAATATTG 58.553 33.333 0.00 0.00 34.81 1.90
1647 1717 0.740737 GCTCATGATTCCAAACCCGG 59.259 55.000 0.00 0.00 0.00 5.73
1676 1749 6.966021 TGGATAACACTTTGAAACTTGCTAC 58.034 36.000 0.00 0.00 0.00 3.58
1678 1751 6.449698 CATGGATAACACTTTGAAACTTGCT 58.550 36.000 0.00 0.00 0.00 3.91
1732 3902 7.572759 TCAATTTAGAGTCACTTTACTTTGCG 58.427 34.615 0.00 0.00 0.00 4.85
1738 3908 5.446073 GCCGCTCAATTTAGAGTCACTTTAC 60.446 44.000 0.00 0.00 37.94 2.01
1760 3930 0.249120 AAAAATTAGCAAGGCCGGCC 59.751 50.000 39.29 39.29 0.00 6.13
1904 4084 4.458295 GCCATATTCATGCAGAGTGCTATT 59.542 41.667 0.00 0.00 45.31 1.73
1990 4170 2.294074 CCGTTATAACACACCCATGGG 58.706 52.381 30.23 30.23 42.03 4.00
2020 4200 4.378459 GCAACAGAACATGCTACTTACACC 60.378 45.833 0.00 0.00 39.46 4.16
2021 4201 4.712763 GCAACAGAACATGCTACTTACAC 58.287 43.478 0.00 0.00 39.46 2.90
2032 4212 0.896940 CAGGCCCAGCAACAGAACAT 60.897 55.000 0.00 0.00 0.00 2.71
2034 4214 2.924105 GCAGGCCCAGCAACAGAAC 61.924 63.158 12.59 0.00 0.00 3.01
2041 4221 0.541530 TAATGTTTGCAGGCCCAGCA 60.542 50.000 15.89 15.89 40.85 4.41
2051 4231 6.683090 TCTTTTGTTATGCGTAATGTTTGC 57.317 33.333 0.85 0.00 0.00 3.68
2060 4240 8.184192 CCTCAATATTCTTCTTTTGTTATGCGT 58.816 33.333 0.00 0.00 0.00 5.24
2061 4241 8.184192 ACCTCAATATTCTTCTTTTGTTATGCG 58.816 33.333 0.00 0.00 0.00 4.73
2072 4253 7.907389 TGTGTTGACTACCTCAATATTCTTCT 58.093 34.615 0.00 0.00 41.10 2.85
2073 4254 8.547967 TTGTGTTGACTACCTCAATATTCTTC 57.452 34.615 0.00 0.00 41.10 2.87
2095 4276 1.000274 GCAGCGGTCCAAAAATCTTGT 60.000 47.619 0.00 0.00 0.00 3.16
2201 4383 1.795872 TCACGTTGTACTGCCAATTCG 59.204 47.619 0.00 0.00 0.00 3.34
2270 4465 3.112263 CCACCTCAACCTTACTCCCATA 58.888 50.000 0.00 0.00 0.00 2.74
2317 4553 5.562506 TGTACTCCAGAGTAAATCAGACG 57.437 43.478 9.05 0.00 44.62 4.18
2328 4564 4.115516 CGTCATGGAATTGTACTCCAGAG 58.884 47.826 8.19 4.20 46.04 3.35
2345 4581 8.268850 AGTTAATTTTTGTCAGCTATCGTCAT 57.731 30.769 0.00 0.00 0.00 3.06
2374 4610 9.290988 TGAGTATTTTGAGGCAACAAACTAATA 57.709 29.630 8.84 3.79 39.08 0.98
2383 4619 6.259550 ACAGATTGAGTATTTTGAGGCAAC 57.740 37.500 0.00 0.00 0.00 4.17
2387 4623 6.820656 AGCAGTACAGATTGAGTATTTTGAGG 59.179 38.462 0.00 0.00 0.00 3.86
2411 4647 2.364970 TCAAATCACCACCCTGCAAAAG 59.635 45.455 0.00 0.00 0.00 2.27
2450 4686 1.696097 CGTGGGGGCTTATAGTGGCT 61.696 60.000 0.00 0.00 0.00 4.75
2559 4795 9.981114 ATAAAAAGTTAGTGAAAACATGGAAGG 57.019 29.630 0.00 0.00 0.00 3.46
2563 4799 8.487176 GCACATAAAAAGTTAGTGAAAACATGG 58.513 33.333 0.00 0.00 32.14 3.66
2566 4802 7.704472 CCTGCACATAAAAAGTTAGTGAAAACA 59.296 33.333 0.00 0.00 32.14 2.83
2766 5003 6.270927 CCCTACAATTAGAATCTGAGATGGGA 59.729 42.308 0.00 0.00 0.00 4.37
2801 5038 3.006430 TGTTCATCTTTCGGAGCACTGTA 59.994 43.478 0.00 0.00 0.00 2.74
3236 5481 5.753438 TCGCTGCGAATAGAAAATAGTTCAT 59.247 36.000 23.88 0.00 31.06 2.57
3237 5482 5.106442 TCGCTGCGAATAGAAAATAGTTCA 58.894 37.500 23.88 0.00 31.06 3.18
3256 5501 7.703328 TCAGAAAATTGTTAGTCTTTTTCGCT 58.297 30.769 0.00 0.00 40.98 4.93
3257 5502 7.357613 GCTCAGAAAATTGTTAGTCTTTTTCGC 60.358 37.037 0.00 0.00 40.98 4.70
3422 5667 4.503714 AACTTGTGGAGGGGTGTATATG 57.496 45.455 0.00 0.00 0.00 1.78
3512 5764 3.879295 AGCATGGCATAACTACATGTGAC 59.121 43.478 9.11 0.00 42.89 3.67
3617 5870 3.486383 CAAAAGGCTGTTTCCAGGACTA 58.514 45.455 0.00 0.00 39.22 2.59
3655 5908 5.240623 CACTTTGGGTTTTCTGTATGCAGTA 59.759 40.000 10.80 0.00 43.05 2.74
3661 5914 3.818773 CGACCACTTTGGGTTTTCTGTAT 59.181 43.478 0.00 0.00 43.37 2.29
3666 5919 1.335810 GTCCGACCACTTTGGGTTTTC 59.664 52.381 0.00 0.00 43.37 2.29
3792 6045 2.496470 GGGAGGTGAACTACTACACTGG 59.504 54.545 0.00 0.00 37.22 4.00
3847 6100 5.732633 CAGGGCCATTGTTCAATTTAATGA 58.267 37.500 6.18 0.00 34.55 2.57
3863 6116 0.752743 GAATACATGCAGCAGGGCCA 60.753 55.000 12.54 0.00 0.00 5.36
3992 6274 5.126396 CTTTCCAGGGTTAAGAAAGCAAG 57.874 43.478 0.00 0.00 39.85 4.01
4137 6419 9.216117 GGTGGTGTAGATGGTAAAATATCATAC 57.784 37.037 0.00 0.00 27.47 2.39
4161 6443 7.701539 TGCTATCTTTTGTAAATCACATGGT 57.298 32.000 0.00 0.00 36.90 3.55
4210 6492 6.772716 TCAATCCCCTTTCTCATATTAGCAAC 59.227 38.462 0.00 0.00 0.00 4.17
4279 6561 7.996098 TTTGAGGGTTTTAAGAAGTATCCAG 57.004 36.000 0.00 0.00 0.00 3.86
4280 6562 8.950007 AATTTGAGGGTTTTAAGAAGTATCCA 57.050 30.769 0.00 0.00 0.00 3.41
4305 6605 7.378966 CGCAGGTATCCTTTCTCATATCTTAA 58.621 38.462 0.00 0.00 0.00 1.85
4347 6647 3.680777 AAACAAAACCCTGGAGAGGAA 57.319 42.857 0.00 0.00 42.93 3.36
4348 6648 3.053245 TCAAAACAAAACCCTGGAGAGGA 60.053 43.478 0.00 0.00 42.93 3.71
4363 6663 5.411361 CCAGAAATACGACCATCTCAAAACA 59.589 40.000 0.00 0.00 0.00 2.83
4385 6685 1.277273 CAGCAGTCATCTTCCTCACCA 59.723 52.381 0.00 0.00 0.00 4.17
4490 6800 6.963017 CAAAATTTGCTTTGATGTGCTTTC 57.037 33.333 0.00 0.00 38.35 2.62
4525 6841 7.663081 ACATGTGACATTTACTTCTGAACAGAT 59.337 33.333 0.00 0.00 37.29 2.90
4601 6923 5.613358 ATCTTCTCTTGGTTTTTACTGCG 57.387 39.130 0.00 0.00 0.00 5.18
4678 7043 1.517832 CTACTGTGCTTCGGGGGAG 59.482 63.158 0.00 0.00 0.00 4.30
4685 7055 1.537202 CCTTGTTGGCTACTGTGCTTC 59.463 52.381 0.01 0.00 0.00 3.86
4769 7201 2.637872 ACTCCCTCCGTCTCATCAAAAA 59.362 45.455 0.00 0.00 0.00 1.94
4770 7202 2.257207 ACTCCCTCCGTCTCATCAAAA 58.743 47.619 0.00 0.00 0.00 2.44
4771 7203 1.938585 ACTCCCTCCGTCTCATCAAA 58.061 50.000 0.00 0.00 0.00 2.69
4772 7204 2.656002 CTACTCCCTCCGTCTCATCAA 58.344 52.381 0.00 0.00 0.00 2.57
4773 7205 1.133761 CCTACTCCCTCCGTCTCATCA 60.134 57.143 0.00 0.00 0.00 3.07
4774 7206 1.133730 ACCTACTCCCTCCGTCTCATC 60.134 57.143 0.00 0.00 0.00 2.92
4775 7207 0.927767 ACCTACTCCCTCCGTCTCAT 59.072 55.000 0.00 0.00 0.00 2.90
4776 7208 0.702902 AACCTACTCCCTCCGTCTCA 59.297 55.000 0.00 0.00 0.00 3.27
4777 7209 2.296792 GTAACCTACTCCCTCCGTCTC 58.703 57.143 0.00 0.00 0.00 3.36
4778 7210 1.637553 TGTAACCTACTCCCTCCGTCT 59.362 52.381 0.00 0.00 0.00 4.18
4779 7211 2.134789 TGTAACCTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
4780 7212 2.174360 GTTGTAACCTACTCCCTCCGT 58.826 52.381 0.00 0.00 0.00 4.69
4781 7213 2.165845 CTGTTGTAACCTACTCCCTCCG 59.834 54.545 0.00 0.00 0.00 4.63
4782 7214 3.171528 ACTGTTGTAACCTACTCCCTCC 58.828 50.000 0.00 0.00 0.00 4.30
4783 7215 4.142204 GCTACTGTTGTAACCTACTCCCTC 60.142 50.000 0.00 0.00 0.00 4.30
4784 7216 3.768215 GCTACTGTTGTAACCTACTCCCT 59.232 47.826 0.00 0.00 0.00 4.20
4785 7217 3.512724 TGCTACTGTTGTAACCTACTCCC 59.487 47.826 0.00 0.00 0.00 4.30
4786 7218 4.220163 AGTGCTACTGTTGTAACCTACTCC 59.780 45.833 0.00 0.00 0.00 3.85
4787 7219 5.048224 TGAGTGCTACTGTTGTAACCTACTC 60.048 44.000 0.00 0.00 33.37 2.59
4788 7220 4.831155 TGAGTGCTACTGTTGTAACCTACT 59.169 41.667 0.00 0.00 0.00 2.57
4789 7221 5.130292 TGAGTGCTACTGTTGTAACCTAC 57.870 43.478 0.00 0.00 0.00 3.18
4790 7222 4.321750 GCTGAGTGCTACTGTTGTAACCTA 60.322 45.833 0.00 0.00 38.95 3.08
4791 7223 3.555168 GCTGAGTGCTACTGTTGTAACCT 60.555 47.826 0.00 0.00 38.95 3.50
4826 7259 8.643324 AGATTACTCCCAACTGATGTATTAGTC 58.357 37.037 0.00 0.00 0.00 2.59
5073 7507 3.059120 TGAGAACACTCGAGAGTTACGTG 60.059 47.826 25.13 12.04 40.20 4.49
5079 7513 4.920640 TTTCTTGAGAACACTCGAGAGT 57.079 40.909 21.68 15.52 45.88 3.24
5085 7519 2.731976 ACGCGATTTCTTGAGAACACTC 59.268 45.455 15.93 0.00 33.13 3.51
5087 7521 4.640805 TTACGCGATTTCTTGAGAACAC 57.359 40.909 15.93 0.00 33.13 3.32
5089 7523 5.013861 TGTTTACGCGATTTCTTGAGAAC 57.986 39.130 15.93 2.87 33.13 3.01
5090 7524 5.464057 TCTTGTTTACGCGATTTCTTGAGAA 59.536 36.000 15.93 0.00 0.00 2.87
5091 7525 4.986034 TCTTGTTTACGCGATTTCTTGAGA 59.014 37.500 15.93 3.39 0.00 3.27
5092 7526 5.264060 TCTTGTTTACGCGATTTCTTGAG 57.736 39.130 15.93 0.77 0.00 3.02
5093 7527 5.660629 TTCTTGTTTACGCGATTTCTTGA 57.339 34.783 15.93 0.00 0.00 3.02
5094 7528 8.601243 AATATTCTTGTTTACGCGATTTCTTG 57.399 30.769 15.93 0.00 0.00 3.02
5095 7529 9.916397 CTAATATTCTTGTTTACGCGATTTCTT 57.084 29.630 15.93 0.00 0.00 2.52
5096 7530 8.062448 GCTAATATTCTTGTTTACGCGATTTCT 58.938 33.333 15.93 0.00 0.00 2.52
5097 7531 8.062448 AGCTAATATTCTTGTTTACGCGATTTC 58.938 33.333 15.93 0.67 0.00 2.17
5098 7532 7.916552 AGCTAATATTCTTGTTTACGCGATTT 58.083 30.769 15.93 0.00 0.00 2.17
5099 7533 7.478520 AGCTAATATTCTTGTTTACGCGATT 57.521 32.000 15.93 0.00 0.00 3.34
5100 7534 7.328737 CCTAGCTAATATTCTTGTTTACGCGAT 59.671 37.037 15.93 0.00 0.00 4.58
5101 7535 6.639686 CCTAGCTAATATTCTTGTTTACGCGA 59.360 38.462 15.93 0.00 0.00 5.87
5102 7536 6.615839 GCCTAGCTAATATTCTTGTTTACGCG 60.616 42.308 3.53 3.53 0.00 6.01
5103 7537 6.424207 AGCCTAGCTAATATTCTTGTTTACGC 59.576 38.462 0.00 0.00 36.99 4.42
5104 7538 7.948278 AGCCTAGCTAATATTCTTGTTTACG 57.052 36.000 0.00 0.00 36.99 3.18
5108 7542 9.606631 GCATATAGCCTAGCTAATATTCTTGTT 57.393 33.333 0.00 0.00 44.62 2.83
5109 7543 8.986991 AGCATATAGCCTAGCTAATATTCTTGT 58.013 33.333 0.00 0.00 44.62 3.16
5163 7597 7.267128 ACCCAATAATCATGTTAAACAGCATG 58.733 34.615 0.00 0.00 42.62 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.