Multiple sequence alignment - TraesCS1A01G282800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G282800 chr1A 100.000 2237 0 0 1 2237 480751693 480749457 0.000000e+00 4132
1 TraesCS1A01G282800 chr1D 86.740 2006 124 53 21 1936 379585057 379583104 0.000000e+00 2100
2 TraesCS1A01G282800 chr1D 91.964 112 6 2 2126 2234 379583063 379582952 1.070000e-33 154
3 TraesCS1A01G282800 chr1B 86.991 1891 104 49 17 1818 509005512 509003675 0.000000e+00 1999
4 TraesCS1A01G282800 chr1B 93.578 109 5 1 2131 2237 509003399 509003291 6.390000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G282800 chr1A 480749457 480751693 2236 True 4132 4132 100.0000 1 2237 1 chr1A.!!$R1 2236
1 TraesCS1A01G282800 chr1D 379582952 379585057 2105 True 1127 2100 89.3520 21 2234 2 chr1D.!!$R1 2213
2 TraesCS1A01G282800 chr1B 509003291 509005512 2221 True 1080 1999 90.2845 17 2237 2 chr1B.!!$R1 2220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 831 0.318441 TGAAGCTGTCAGGGAACGAG 59.682 55.0 1.14 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2267 0.036306 CGTGCTCCTACCCCTGTTTT 59.964 55.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.306571 GGCTCATAGCAGCAGATGATACA 60.307 47.826 9.76 0.00 44.75 2.29
64 65 0.827368 ACCTCCGCTCATTCTCTTCC 59.173 55.000 0.00 0.00 0.00 3.46
228 240 2.878406 CGCCATCTACCCCATTGTTTAG 59.122 50.000 0.00 0.00 0.00 1.85
247 259 3.112075 CACGATCGCCACGCAACT 61.112 61.111 16.60 0.00 0.00 3.16
255 267 2.356313 CCACGCAACTGCTCGACT 60.356 61.111 0.00 0.00 39.32 4.18
256 268 2.661566 CCACGCAACTGCTCGACTG 61.662 63.158 0.00 0.00 39.32 3.51
286 298 1.437625 GAAGAAGTCAGCAGCCAGAC 58.562 55.000 7.38 7.38 35.02 3.51
420 450 3.119955 GCCACTGTCGGATAAAAAGAACC 60.120 47.826 1.23 0.00 0.00 3.62
423 453 2.676342 CTGTCGGATAAAAAGAACCCGG 59.324 50.000 0.00 0.00 40.48 5.73
496 527 3.772060 GCTGTAGGCTTCAATCAAAGG 57.228 47.619 0.00 0.00 38.06 3.11
526 557 1.640428 TCAGCCGAGAAATTACAGCG 58.360 50.000 0.00 0.00 0.00 5.18
537 571 4.691216 AGAAATTACAGCGACTGAGAAACC 59.309 41.667 12.77 0.55 35.18 3.27
548 582 0.874175 TGAGAAACCACGTCGCTGTG 60.874 55.000 0.00 0.44 39.60 3.66
619 653 1.604915 GTTCAAGCCTCCTCCCCTC 59.395 63.158 0.00 0.00 0.00 4.30
620 654 1.990060 TTCAAGCCTCCTCCCCTCG 60.990 63.158 0.00 0.00 0.00 4.63
621 655 3.474570 CAAGCCTCCTCCCCTCGG 61.475 72.222 0.00 0.00 0.00 4.63
665 704 6.046643 TCCATAGCCCCAATGATTAATAACCT 59.953 38.462 0.00 0.00 0.00 3.50
675 714 7.869429 CCAATGATTAATAACCTGGAATTCTGC 59.131 37.037 5.23 0.00 0.00 4.26
685 724 2.703007 CTGGAATTCTGCCCTAGCTAGT 59.297 50.000 19.31 0.00 40.80 2.57
688 727 4.101119 TGGAATTCTGCCCTAGCTAGTTAC 59.899 45.833 19.31 8.71 40.80 2.50
690 729 2.083628 TCTGCCCTAGCTAGTTACCC 57.916 55.000 19.31 3.67 40.80 3.69
691 730 1.574339 TCTGCCCTAGCTAGTTACCCT 59.426 52.381 19.31 0.00 40.80 4.34
736 793 1.334960 GGCACGACACACTTTGATTGG 60.335 52.381 0.00 0.00 0.00 3.16
740 797 2.357637 ACGACACACTTTGATTGGTTGG 59.642 45.455 0.00 0.00 0.00 3.77
772 829 0.951040 GGTGAAGCTGTCAGGGAACG 60.951 60.000 1.14 0.00 36.74 3.95
774 831 0.318441 TGAAGCTGTCAGGGAACGAG 59.682 55.000 1.14 0.00 0.00 4.18
775 832 1.004440 AAGCTGTCAGGGAACGAGC 60.004 57.895 1.14 0.00 0.00 5.03
777 834 1.301716 GCTGTCAGGGAACGAGCAA 60.302 57.895 1.14 0.00 0.00 3.91
778 835 0.674895 GCTGTCAGGGAACGAGCAAT 60.675 55.000 1.14 0.00 0.00 3.56
779 836 1.813513 CTGTCAGGGAACGAGCAATT 58.186 50.000 0.00 0.00 0.00 2.32
780 837 2.935238 GCTGTCAGGGAACGAGCAATTA 60.935 50.000 1.14 0.00 0.00 1.40
781 838 3.535561 CTGTCAGGGAACGAGCAATTAT 58.464 45.455 0.00 0.00 0.00 1.28
782 839 3.531538 TGTCAGGGAACGAGCAATTATC 58.468 45.455 0.00 0.00 0.00 1.75
783 840 2.872858 GTCAGGGAACGAGCAATTATCC 59.127 50.000 0.00 0.00 0.00 2.59
784 841 2.771943 TCAGGGAACGAGCAATTATCCT 59.228 45.455 0.00 0.00 0.00 3.24
801 858 1.567649 TCCTTCCTTCCTAGGCGAGTA 59.432 52.381 2.96 0.00 41.69 2.59
802 859 1.957877 CCTTCCTTCCTAGGCGAGTAG 59.042 57.143 2.96 4.54 41.69 2.57
828 885 5.468592 CATTTGGTCTCTGATCTCTATCCG 58.531 45.833 0.00 0.00 0.00 4.18
841 898 2.230992 CTCTATCCGCTCAGAGGAATGG 59.769 54.545 0.00 0.00 41.69 3.16
845 902 1.063942 TCCGCTCAGAGGAATGGTCTA 60.064 52.381 0.00 0.00 34.33 2.59
851 908 4.036144 GCTCAGAGGAATGGTCTATTTTGC 59.964 45.833 0.00 0.00 0.00 3.68
940 1000 3.081804 CCCTCAAGTGTTGTCCCAATAC 58.918 50.000 0.00 0.00 0.00 1.89
948 1008 2.306512 TGTTGTCCCAATACCCACTACC 59.693 50.000 0.00 0.00 0.00 3.18
949 1009 2.574824 GTTGTCCCAATACCCACTACCT 59.425 50.000 0.00 0.00 0.00 3.08
1131 1191 4.893601 GCCTCGGCCTACTTCCGC 62.894 72.222 0.00 0.00 46.05 5.54
1246 1315 0.391130 ATCGTGGTGACCGATTGTGG 60.391 55.000 0.00 0.00 39.60 4.17
1267 1336 0.895100 TGAAGCGCAGAAAGGCCAAT 60.895 50.000 11.47 0.00 0.00 3.16
1427 1521 8.352201 TGCATATATTTGTATTTCAGTTCAGCC 58.648 33.333 0.00 0.00 0.00 4.85
1433 1527 6.554334 TTGTATTTCAGTTCAGCCTGTAAC 57.446 37.500 0.00 0.00 34.02 2.50
1434 1528 4.688879 TGTATTTCAGTTCAGCCTGTAACG 59.311 41.667 0.00 0.00 34.02 3.18
1435 1529 3.462483 TTTCAGTTCAGCCTGTAACGA 57.538 42.857 0.00 0.00 34.02 3.85
1437 1531 1.961394 TCAGTTCAGCCTGTAACGAGT 59.039 47.619 0.00 0.00 34.02 4.18
1438 1532 2.030185 TCAGTTCAGCCTGTAACGAGTC 60.030 50.000 0.00 0.00 34.02 3.36
1526 1633 8.221251 AGAAGATGTATAGTGTCAGAGTCCATA 58.779 37.037 0.00 0.00 0.00 2.74
1527 1634 7.753309 AGATGTATAGTGTCAGAGTCCATAC 57.247 40.000 0.00 0.00 0.00 2.39
1528 1635 7.290813 AGATGTATAGTGTCAGAGTCCATACA 58.709 38.462 0.00 0.00 33.38 2.29
1529 1636 7.780271 AGATGTATAGTGTCAGAGTCCATACAA 59.220 37.037 0.00 0.00 32.80 2.41
1530 1637 7.712204 TGTATAGTGTCAGAGTCCATACAAA 57.288 36.000 0.00 0.00 0.00 2.83
1531 1638 8.306313 TGTATAGTGTCAGAGTCCATACAAAT 57.694 34.615 0.00 0.00 0.00 2.32
1532 1639 9.416284 TGTATAGTGTCAGAGTCCATACAAATA 57.584 33.333 0.00 0.00 0.00 1.40
1651 1758 4.634883 ACTGTCAAGCATCAAGATTGCTAG 59.365 41.667 0.00 0.00 43.18 3.42
1675 1782 1.798223 CATCCGCGTTCTTCAGTTCAA 59.202 47.619 4.92 0.00 0.00 2.69
1678 1785 1.201812 CCGCGTTCTTCAGTTCAATCG 60.202 52.381 4.92 0.00 0.00 3.34
1689 1796 5.673337 TCAGTTCAATCGTCCTTTTCAAG 57.327 39.130 0.00 0.00 0.00 3.02
1760 1876 1.131638 TCACACCCAGAGCAAGAACT 58.868 50.000 0.00 0.00 0.00 3.01
1767 1883 3.012518 CCCAGAGCAAGAACTACCATTG 58.987 50.000 0.00 0.00 0.00 2.82
1783 1906 5.757850 ACCATTGTTCTCTTGAAACTCAC 57.242 39.130 0.00 0.00 33.52 3.51
1820 1943 5.460646 ACTTTGGTTGAAAAGATGTATGCG 58.539 37.500 3.82 0.00 39.12 4.73
1826 2064 5.163663 GGTTGAAAAGATGTATGCGGAATCA 60.164 40.000 0.00 0.00 0.00 2.57
1833 2071 4.572389 AGATGTATGCGGAATCACAAGAAC 59.428 41.667 0.00 0.00 0.00 3.01
1834 2072 3.669536 TGTATGCGGAATCACAAGAACA 58.330 40.909 0.00 0.00 0.00 3.18
1835 2073 3.435327 TGTATGCGGAATCACAAGAACAC 59.565 43.478 0.00 0.00 0.00 3.32
1836 2074 1.960417 TGCGGAATCACAAGAACACA 58.040 45.000 0.00 0.00 0.00 3.72
1837 2075 2.503331 TGCGGAATCACAAGAACACAT 58.497 42.857 0.00 0.00 0.00 3.21
1839 2077 2.414559 GCGGAATCACAAGAACACATGG 60.415 50.000 0.00 0.00 0.00 3.66
1840 2078 3.073678 CGGAATCACAAGAACACATGGA 58.926 45.455 0.00 0.00 0.00 3.41
1841 2079 3.501828 CGGAATCACAAGAACACATGGAA 59.498 43.478 0.00 0.00 0.00 3.53
1842 2080 4.378770 CGGAATCACAAGAACACATGGAAG 60.379 45.833 0.00 0.00 0.00 3.46
1858 2096 2.300152 TGGAAGGTTCTGTGCTACTCTG 59.700 50.000 0.00 0.00 0.00 3.35
1865 2103 0.820871 CTGTGCTACTCTGGTCTCCC 59.179 60.000 0.00 0.00 0.00 4.30
1881 2119 3.133183 GTCTCCCATCAGGAAAGGAGTAC 59.867 52.174 14.21 9.51 46.94 2.73
1884 2122 1.207089 CCATCAGGAAAGGAGTACGCA 59.793 52.381 0.00 0.00 36.89 5.24
1891 2129 1.984297 GAAAGGAGTACGCACGAGAAC 59.016 52.381 0.00 0.00 0.00 3.01
1897 2135 3.490419 GGAGTACGCACGAGAACCATAAT 60.490 47.826 0.00 0.00 0.00 1.28
1904 2142 4.271687 GCACGAGAACCATAATTAAAGCG 58.728 43.478 0.00 0.00 0.00 4.68
1905 2143 4.271687 CACGAGAACCATAATTAAAGCGC 58.728 43.478 0.00 0.00 0.00 5.92
1906 2144 3.936453 ACGAGAACCATAATTAAAGCGCA 59.064 39.130 11.47 0.00 0.00 6.09
1915 2153 6.017440 ACCATAATTAAAGCGCACACGAATAT 60.017 34.615 11.47 0.00 43.93 1.28
1920 2158 3.925688 AAGCGCACACGAATATTACAG 57.074 42.857 11.47 0.00 43.93 2.74
1927 2165 5.554510 CGCACACGAATATTACAGCAACTAG 60.555 44.000 0.00 0.00 43.93 2.57
1931 2169 7.224753 CACACGAATATTACAGCAACTAGGATT 59.775 37.037 0.00 0.00 0.00 3.01
1939 2177 8.863872 ATTACAGCAACTAGGATTAGTTTGTT 57.136 30.769 8.99 0.00 45.57 2.83
1942 2180 8.007405 ACAGCAACTAGGATTAGTTTGTTTTT 57.993 30.769 0.00 0.00 45.57 1.94
1945 2183 7.012989 AGCAACTAGGATTAGTTTGTTTTTCGT 59.987 33.333 0.00 0.00 45.57 3.85
1946 2184 8.284693 GCAACTAGGATTAGTTTGTTTTTCGTA 58.715 33.333 0.00 0.00 45.57 3.43
1947 2185 9.590088 CAACTAGGATTAGTTTGTTTTTCGTAC 57.410 33.333 0.00 0.00 45.57 3.67
1948 2186 8.011067 ACTAGGATTAGTTTGTTTTTCGTACG 57.989 34.615 9.53 9.53 36.75 3.67
1949 2187 5.682869 AGGATTAGTTTGTTTTTCGTACGC 58.317 37.500 11.24 0.00 0.00 4.42
1950 2188 5.236911 AGGATTAGTTTGTTTTTCGTACGCA 59.763 36.000 11.24 0.00 0.00 5.24
1951 2189 5.337773 GGATTAGTTTGTTTTTCGTACGCAC 59.662 40.000 11.24 5.15 0.00 5.34
1968 2206 1.226974 ACGGATCAATGCGGACTCG 60.227 57.895 8.74 0.00 46.28 4.18
1988 2226 3.813596 GACATCGTCCACATGGCC 58.186 61.111 0.00 0.00 34.44 5.36
1989 2227 2.125147 ACATCGTCCACATGGCCG 60.125 61.111 0.00 0.00 38.01 6.13
1992 2230 2.264480 TCGTCCACATGGCCGAAG 59.736 61.111 0.76 0.00 43.02 3.79
1993 2231 3.499737 CGTCCACATGGCCGAAGC 61.500 66.667 0.00 0.00 39.16 3.86
2005 2243 0.521735 GCCGAAGCCTTAACACTTGG 59.478 55.000 0.00 0.00 0.00 3.61
2006 2244 1.165270 CCGAAGCCTTAACACTTGGG 58.835 55.000 0.00 0.00 35.78 4.12
2007 2245 0.521735 CGAAGCCTTAACACTTGGGC 59.478 55.000 0.00 0.00 44.38 5.36
2009 2247 2.566529 GCCTTAACACTTGGGCGC 59.433 61.111 0.00 0.00 35.08 6.53
2010 2248 2.989881 GCCTTAACACTTGGGCGCC 61.990 63.158 21.18 21.18 35.08 6.53
2011 2249 2.686816 CCTTAACACTTGGGCGCCG 61.687 63.158 22.54 9.65 0.00 6.46
2012 2250 2.670251 TTAACACTTGGGCGCCGG 60.670 61.111 22.54 15.53 0.00 6.13
2013 2251 4.708386 TAACACTTGGGCGCCGGG 62.708 66.667 22.54 10.91 0.00 5.73
2039 2277 3.432262 CGAAGGGAAAAACAGGGGT 57.568 52.632 0.00 0.00 0.00 4.95
2040 2278 2.572209 CGAAGGGAAAAACAGGGGTA 57.428 50.000 0.00 0.00 0.00 3.69
2041 2279 2.433436 CGAAGGGAAAAACAGGGGTAG 58.567 52.381 0.00 0.00 0.00 3.18
2042 2280 2.803956 GAAGGGAAAAACAGGGGTAGG 58.196 52.381 0.00 0.00 0.00 3.18
2043 2281 2.143231 AGGGAAAAACAGGGGTAGGA 57.857 50.000 0.00 0.00 0.00 2.94
2044 2282 1.993301 AGGGAAAAACAGGGGTAGGAG 59.007 52.381 0.00 0.00 0.00 3.69
2045 2283 1.616187 GGGAAAAACAGGGGTAGGAGC 60.616 57.143 0.00 0.00 0.00 4.70
2046 2284 1.074889 GGAAAAACAGGGGTAGGAGCA 59.925 52.381 0.00 0.00 0.00 4.26
2047 2285 2.160205 GAAAAACAGGGGTAGGAGCAC 58.840 52.381 0.00 0.00 0.00 4.40
2048 2286 0.036306 AAAACAGGGGTAGGAGCACG 59.964 55.000 0.00 0.00 0.00 5.34
2049 2287 1.125711 AAACAGGGGTAGGAGCACGT 61.126 55.000 0.00 0.00 0.00 4.49
2050 2288 0.251922 AACAGGGGTAGGAGCACGTA 60.252 55.000 0.00 0.00 0.00 3.57
2051 2289 0.251922 ACAGGGGTAGGAGCACGTAA 60.252 55.000 0.00 0.00 0.00 3.18
2052 2290 0.899720 CAGGGGTAGGAGCACGTAAA 59.100 55.000 0.00 0.00 0.00 2.01
2053 2291 1.485066 CAGGGGTAGGAGCACGTAAAT 59.515 52.381 0.00 0.00 0.00 1.40
2054 2292 2.093128 CAGGGGTAGGAGCACGTAAATT 60.093 50.000 0.00 0.00 0.00 1.82
2055 2293 2.093128 AGGGGTAGGAGCACGTAAATTG 60.093 50.000 0.00 0.00 0.00 2.32
2056 2294 2.285977 GGGTAGGAGCACGTAAATTGG 58.714 52.381 0.00 0.00 0.00 3.16
2057 2295 2.093341 GGGTAGGAGCACGTAAATTGGA 60.093 50.000 0.00 0.00 0.00 3.53
2058 2296 3.602483 GGTAGGAGCACGTAAATTGGAA 58.398 45.455 0.00 0.00 0.00 3.53
2059 2297 4.196971 GGTAGGAGCACGTAAATTGGAAT 58.803 43.478 0.00 0.00 0.00 3.01
2060 2298 4.638865 GGTAGGAGCACGTAAATTGGAATT 59.361 41.667 0.00 0.00 0.00 2.17
2061 2299 5.124936 GGTAGGAGCACGTAAATTGGAATTT 59.875 40.000 3.02 3.02 41.24 1.82
2062 2300 6.316890 GGTAGGAGCACGTAAATTGGAATTTA 59.683 38.462 0.00 1.22 39.24 1.40
2063 2301 6.827586 AGGAGCACGTAAATTGGAATTTAA 57.172 33.333 6.20 0.00 41.14 1.52
2064 2302 6.852664 AGGAGCACGTAAATTGGAATTTAAG 58.147 36.000 13.12 13.12 41.14 1.85
2065 2303 6.657541 AGGAGCACGTAAATTGGAATTTAAGA 59.342 34.615 18.63 0.00 41.14 2.10
2066 2304 7.175990 AGGAGCACGTAAATTGGAATTTAAGAA 59.824 33.333 18.63 0.00 41.14 2.52
2067 2305 7.810759 GGAGCACGTAAATTGGAATTTAAGAAA 59.189 33.333 18.63 0.00 41.14 2.52
2068 2306 9.187455 GAGCACGTAAATTGGAATTTAAGAAAA 57.813 29.630 18.63 0.00 41.14 2.29
2069 2307 9.705290 AGCACGTAAATTGGAATTTAAGAAAAT 57.295 25.926 18.63 5.13 41.14 1.82
2082 2320 8.422577 AATTTAAGAAAATTCTAGGCACCTGT 57.577 30.769 0.00 0.00 40.51 4.00
2083 2321 6.817765 TTAAGAAAATTCTAGGCACCTGTG 57.182 37.500 0.00 0.00 36.28 3.66
2084 2322 3.084786 AGAAAATTCTAGGCACCTGTGC 58.915 45.455 13.75 13.75 45.01 4.57
2093 2331 3.625897 CACCTGTGCCCGGACAGA 61.626 66.667 21.66 6.12 45.39 3.41
2094 2332 2.607750 ACCTGTGCCCGGACAGAT 60.608 61.111 21.66 4.59 45.39 2.90
2095 2333 2.187946 CCTGTGCCCGGACAGATC 59.812 66.667 21.66 0.00 45.39 2.75
2096 2334 2.187946 CTGTGCCCGGACAGATCC 59.812 66.667 16.41 0.00 45.39 3.36
2097 2335 2.606213 TGTGCCCGGACAGATCCA 60.606 61.111 0.73 0.00 46.67 3.41
2098 2336 1.976132 CTGTGCCCGGACAGATCCAT 61.976 60.000 16.41 0.00 46.67 3.41
2099 2337 1.224592 GTGCCCGGACAGATCCATT 59.775 57.895 0.73 0.00 46.67 3.16
2100 2338 0.394352 GTGCCCGGACAGATCCATTT 60.394 55.000 0.73 0.00 46.67 2.32
2101 2339 0.394216 TGCCCGGACAGATCCATTTG 60.394 55.000 0.73 0.00 46.67 2.32
2102 2340 0.107214 GCCCGGACAGATCCATTTGA 60.107 55.000 0.73 0.00 46.67 2.69
2103 2341 1.681780 GCCCGGACAGATCCATTTGAA 60.682 52.381 0.73 0.00 46.67 2.69
2104 2342 2.722094 CCCGGACAGATCCATTTGAAA 58.278 47.619 0.73 0.00 46.67 2.69
2105 2343 3.290710 CCCGGACAGATCCATTTGAAAT 58.709 45.455 0.73 0.00 46.67 2.17
2106 2344 4.460263 CCCGGACAGATCCATTTGAAATA 58.540 43.478 0.73 0.00 46.67 1.40
2107 2345 4.887071 CCCGGACAGATCCATTTGAAATAA 59.113 41.667 0.73 0.00 46.67 1.40
2108 2346 5.009010 CCCGGACAGATCCATTTGAAATAAG 59.991 44.000 0.73 0.00 46.67 1.73
2109 2347 5.506317 CCGGACAGATCCATTTGAAATAAGC 60.506 44.000 0.00 0.00 46.67 3.09
2110 2348 5.297776 CGGACAGATCCATTTGAAATAAGCT 59.702 40.000 0.00 0.00 46.67 3.74
2111 2349 6.183360 CGGACAGATCCATTTGAAATAAGCTT 60.183 38.462 3.48 3.48 46.67 3.74
2112 2350 6.976925 GGACAGATCCATTTGAAATAAGCTTG 59.023 38.462 9.86 0.00 45.47 4.01
2113 2351 6.870769 ACAGATCCATTTGAAATAAGCTTGG 58.129 36.000 9.86 0.00 0.00 3.61
2114 2352 6.664816 ACAGATCCATTTGAAATAAGCTTGGA 59.335 34.615 9.86 4.68 36.32 3.53
2115 2353 7.147949 ACAGATCCATTTGAAATAAGCTTGGAG 60.148 37.037 9.86 0.00 35.42 3.86
2116 2354 6.894103 AGATCCATTTGAAATAAGCTTGGAGT 59.106 34.615 9.86 0.00 35.42 3.85
2117 2355 8.055181 AGATCCATTTGAAATAAGCTTGGAGTA 58.945 33.333 9.86 0.00 35.42 2.59
2118 2356 7.391148 TCCATTTGAAATAAGCTTGGAGTAC 57.609 36.000 9.86 0.00 0.00 2.73
2119 2357 6.377146 TCCATTTGAAATAAGCTTGGAGTACC 59.623 38.462 9.86 0.00 0.00 3.34
2120 2358 6.152661 CCATTTGAAATAAGCTTGGAGTACCA 59.847 38.462 9.86 0.00 45.34 3.25
2166 2404 2.031683 CAGTTCGATATCCCCGCAAAAC 59.968 50.000 0.00 0.00 0.00 2.43
2168 2406 0.531090 TCGATATCCCCGCAAAACCG 60.531 55.000 0.00 0.00 0.00 4.44
2213 2454 0.463620 GCCAAGCCCACACAAGAAAA 59.536 50.000 0.00 0.00 0.00 2.29
2224 2465 4.136796 CACACAAGAAAACCTCTCATCCA 58.863 43.478 0.00 0.00 31.02 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.221422 TGCTATGAGCCGGCGGTC 62.221 66.667 28.82 22.37 41.51 4.79
5 6 4.227134 CTGCTATGAGCCGGCGGT 62.227 66.667 28.82 14.51 41.51 5.68
7 8 4.897357 TGCTGCTATGAGCCGGCG 62.897 66.667 23.20 7.46 41.51 6.46
8 9 2.728443 ATCTGCTGCTATGAGCCGGC 62.728 60.000 21.89 21.89 41.51 6.13
9 10 0.949588 CATCTGCTGCTATGAGCCGG 60.950 60.000 0.00 0.00 41.51 6.13
10 11 0.033090 TCATCTGCTGCTATGAGCCG 59.967 55.000 12.26 0.00 41.51 5.52
11 12 2.476126 ATCATCTGCTGCTATGAGCC 57.524 50.000 18.38 0.00 41.51 4.70
12 13 3.922910 TGTATCATCTGCTGCTATGAGC 58.077 45.455 18.38 14.81 42.82 4.26
13 14 5.581479 GGATTGTATCATCTGCTGCTATGAG 59.419 44.000 18.38 2.16 35.67 2.90
14 15 5.485620 GGATTGTATCATCTGCTGCTATGA 58.514 41.667 16.68 16.68 36.60 2.15
15 16 4.329256 CGGATTGTATCATCTGCTGCTATG 59.671 45.833 0.00 5.25 0.00 2.23
16 17 4.502016 CGGATTGTATCATCTGCTGCTAT 58.498 43.478 0.00 0.00 0.00 2.97
17 18 3.306294 CCGGATTGTATCATCTGCTGCTA 60.306 47.826 0.00 0.00 0.00 3.49
18 19 2.549563 CCGGATTGTATCATCTGCTGCT 60.550 50.000 0.00 0.00 0.00 4.24
19 20 1.802960 CCGGATTGTATCATCTGCTGC 59.197 52.381 0.00 0.00 0.00 5.25
215 227 0.402504 TCGTGGCTAAACAATGGGGT 59.597 50.000 0.00 0.00 0.00 4.95
247 259 1.663379 CCCGATACACCAGTCGAGCA 61.663 60.000 0.00 0.00 40.11 4.26
255 267 1.829222 GACTTCTTCCCCGATACACCA 59.171 52.381 0.00 0.00 0.00 4.17
256 268 1.829222 TGACTTCTTCCCCGATACACC 59.171 52.381 0.00 0.00 0.00 4.16
286 298 1.600663 CCGGACAAGAAGATCGATCCG 60.601 57.143 21.66 16.33 46.77 4.18
318 330 2.187685 CGACTATGCTGCCTGCCA 59.812 61.111 0.00 0.00 42.00 4.92
320 332 3.275338 GCCGACTATGCTGCCTGC 61.275 66.667 0.00 0.00 43.25 4.85
322 334 4.227134 CGGCCGACTATGCTGCCT 62.227 66.667 24.07 0.00 41.80 4.75
348 361 0.784778 GAAAGTTCAGCGTGACCTCG 59.215 55.000 0.00 0.00 0.00 4.63
352 365 1.860078 CGGGAAAGTTCAGCGTGAC 59.140 57.895 0.00 0.00 0.00 3.67
382 399 0.737019 TGGCGTAATCCGTCGGAAAC 60.737 55.000 19.76 17.71 46.52 2.78
390 408 1.876714 CCGACAGTGGCGTAATCCG 60.877 63.158 18.86 0.00 40.40 4.18
393 411 3.530265 TTTATCCGACAGTGGCGTAAT 57.470 42.857 18.86 12.88 0.00 1.89
403 421 2.702261 CCGGGTTCTTTTTATCCGACA 58.298 47.619 0.00 0.00 42.94 4.35
406 436 0.736636 GGCCGGGTTCTTTTTATCCG 59.263 55.000 2.18 0.00 40.32 4.18
496 527 3.078594 TCTCGGCTGAAAAACAAAAGC 57.921 42.857 0.00 0.00 34.86 3.51
497 528 6.588348 AATTTCTCGGCTGAAAAACAAAAG 57.412 33.333 0.00 0.00 39.08 2.27
498 529 7.036220 TGTAATTTCTCGGCTGAAAAACAAAA 58.964 30.769 0.00 0.00 39.08 2.44
499 530 6.565234 TGTAATTTCTCGGCTGAAAAACAAA 58.435 32.000 0.00 0.00 39.08 2.83
500 531 6.137794 TGTAATTTCTCGGCTGAAAAACAA 57.862 33.333 0.00 0.00 39.08 2.83
501 532 5.757886 CTGTAATTTCTCGGCTGAAAAACA 58.242 37.500 0.00 7.23 39.08 2.83
526 557 0.318784 AGCGACGTGGTTTCTCAGTC 60.319 55.000 0.00 0.00 0.00 3.51
537 571 2.707090 CGTAGTGCACAGCGACGTG 61.707 63.158 21.04 0.61 40.00 4.49
548 582 1.542915 TCCAAGTGGAGTACGTAGTGC 59.457 52.381 14.43 14.43 45.64 4.40
665 704 2.764269 ACTAGCTAGGGCAGAATTCCA 58.236 47.619 24.35 0.00 41.70 3.53
675 714 1.219724 TCCCAGGGTAACTAGCTAGGG 59.780 57.143 24.35 14.06 38.32 3.53
685 724 3.596046 ACCATGAGAATTTCCCAGGGTAA 59.404 43.478 14.58 1.78 42.32 2.85
688 727 2.025037 TCACCATGAGAATTTCCCAGGG 60.025 50.000 9.72 9.72 37.72 4.45
727 784 3.857010 GCTCCGAAACCAACCAATCAAAG 60.857 47.826 0.00 0.00 0.00 2.77
736 793 1.804748 CACCTTAGCTCCGAAACCAAC 59.195 52.381 0.00 0.00 0.00 3.77
740 797 1.732809 GCTTCACCTTAGCTCCGAAAC 59.267 52.381 0.00 0.00 35.74 2.78
801 858 7.931218 GATAGAGATCAGAGACCAAATGGGCT 61.931 46.154 7.75 7.75 43.69 5.19
802 859 2.172293 AGAGATCAGAGACCAAATGGGC 59.828 50.000 4.17 0.00 46.16 5.36
828 885 4.036144 GCAAAATAGACCATTCCTCTGAGC 59.964 45.833 0.00 0.00 0.00 4.26
841 898 6.100004 GCTTAAAAAGGGAGGCAAAATAGAC 58.900 40.000 0.00 0.00 0.00 2.59
845 902 3.009033 GGGCTTAAAAAGGGAGGCAAAAT 59.991 43.478 0.00 0.00 0.00 1.82
851 908 2.760650 GACATGGGCTTAAAAAGGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
940 1000 2.104170 GTGGAGAGAAGAGGTAGTGGG 58.896 57.143 0.00 0.00 0.00 4.61
948 1008 2.442413 AGAAGACGGTGGAGAGAAGAG 58.558 52.381 0.00 0.00 0.00 2.85
949 1009 2.588464 AGAAGACGGTGGAGAGAAGA 57.412 50.000 0.00 0.00 0.00 2.87
985 1045 3.615155 CCTCCATGAGACCTTTTCCTTC 58.385 50.000 0.00 0.00 0.00 3.46
989 1049 1.683319 GGCCCTCCATGAGACCTTTTC 60.683 57.143 0.00 0.00 0.00 2.29
1238 1307 0.453282 CTGCGCTTCAACCACAATCG 60.453 55.000 9.73 0.00 0.00 3.34
1246 1315 1.081175 GGCCTTTCTGCGCTTCAAC 60.081 57.895 9.73 0.00 0.00 3.18
1267 1336 5.242434 TGCTTCGCTCTGTTTCCTTTATTA 58.758 37.500 0.00 0.00 0.00 0.98
1364 1455 1.005748 TGCAGGTCTGAAGCTCGTG 60.006 57.895 1.65 0.00 0.00 4.35
1372 1463 3.402110 CACACATAAACTGCAGGTCTGA 58.598 45.455 19.93 0.41 0.00 3.27
1420 1514 1.337821 CGACTCGTTACAGGCTGAAC 58.662 55.000 23.66 18.48 0.00 3.18
1427 1521 1.266175 ACACTCACCGACTCGTTACAG 59.734 52.381 0.00 0.00 0.00 2.74
1433 1527 0.311165 AGTTGACACTCACCGACTCG 59.689 55.000 0.00 0.00 0.00 4.18
1434 1528 1.067212 ACAGTTGACACTCACCGACTC 59.933 52.381 0.00 0.00 0.00 3.36
1435 1529 1.112113 ACAGTTGACACTCACCGACT 58.888 50.000 0.00 0.00 0.00 4.18
1437 1531 3.804786 TTTACAGTTGACACTCACCGA 57.195 42.857 0.00 0.00 0.00 4.69
1438 1532 5.063438 CCATATTTACAGTTGACACTCACCG 59.937 44.000 0.00 0.00 0.00 4.94
1493 1600 7.394641 TCTGACACTATACATCTTCTTCACAGT 59.605 37.037 0.00 0.00 0.00 3.55
1526 1633 7.059788 TGCCATATTACACTCCATGTATTTGT 58.940 34.615 0.00 0.00 43.46 2.83
1527 1634 7.509141 TGCCATATTACACTCCATGTATTTG 57.491 36.000 0.00 0.00 43.46 2.32
1528 1635 8.710749 ATTGCCATATTACACTCCATGTATTT 57.289 30.769 0.00 0.00 43.46 1.40
1529 1636 9.806448 TTATTGCCATATTACACTCCATGTATT 57.194 29.630 0.00 0.00 43.46 1.89
1530 1637 9.806448 TTTATTGCCATATTACACTCCATGTAT 57.194 29.630 0.00 0.00 43.46 2.29
1531 1638 9.634021 TTTTATTGCCATATTACACTCCATGTA 57.366 29.630 0.00 0.00 43.19 2.29
1532 1639 8.532186 TTTTATTGCCATATTACACTCCATGT 57.468 30.769 0.00 0.00 46.06 3.21
1626 1733 3.189910 GCAATCTTGATGCTTGACAGTCA 59.810 43.478 0.00 0.00 40.64 3.41
1651 1758 0.179215 CTGAAGAACGCGGATGCAAC 60.179 55.000 12.47 0.00 42.97 4.17
1689 1796 7.190920 TCGAACTGAAAATTCTTCTTCTTCC 57.809 36.000 0.00 0.00 0.00 3.46
1760 1876 6.353323 TGTGAGTTTCAAGAGAACAATGGTA 58.647 36.000 0.00 0.00 32.39 3.25
1783 1906 8.925161 TTCAACCAAAGTTATTCTTGTTCTTG 57.075 30.769 0.00 0.00 36.40 3.02
1818 1941 2.414559 CCATGTGTTCTTGTGATTCCGC 60.415 50.000 0.00 0.00 0.00 5.54
1820 1943 4.082571 CCTTCCATGTGTTCTTGTGATTCC 60.083 45.833 0.00 0.00 0.00 3.01
1826 2064 3.885297 CAGAACCTTCCATGTGTTCTTGT 59.115 43.478 11.98 0.00 44.63 3.16
1833 2071 1.901591 AGCACAGAACCTTCCATGTG 58.098 50.000 0.00 0.00 44.58 3.21
1834 2072 2.639839 AGTAGCACAGAACCTTCCATGT 59.360 45.455 0.00 0.00 0.00 3.21
1835 2073 3.055530 AGAGTAGCACAGAACCTTCCATG 60.056 47.826 0.00 0.00 0.00 3.66
1836 2074 3.055530 CAGAGTAGCACAGAACCTTCCAT 60.056 47.826 0.00 0.00 0.00 3.41
1837 2075 2.300152 CAGAGTAGCACAGAACCTTCCA 59.700 50.000 0.00 0.00 0.00 3.53
1839 2077 2.300437 ACCAGAGTAGCACAGAACCTTC 59.700 50.000 0.00 0.00 0.00 3.46
1840 2078 2.300437 GACCAGAGTAGCACAGAACCTT 59.700 50.000 0.00 0.00 0.00 3.50
1841 2079 1.896465 GACCAGAGTAGCACAGAACCT 59.104 52.381 0.00 0.00 0.00 3.50
1842 2080 1.896465 AGACCAGAGTAGCACAGAACC 59.104 52.381 0.00 0.00 0.00 3.62
1865 2103 2.271800 GTGCGTACTCCTTTCCTGATG 58.728 52.381 0.00 0.00 0.00 3.07
1881 2119 4.271687 GCTTTAATTATGGTTCTCGTGCG 58.728 43.478 0.00 0.00 0.00 5.34
1884 2122 3.936453 TGCGCTTTAATTATGGTTCTCGT 59.064 39.130 9.73 0.00 0.00 4.18
1891 2129 3.666883 TCGTGTGCGCTTTAATTATGG 57.333 42.857 9.73 0.00 38.14 2.74
1897 2135 5.725590 GCTGTAATATTCGTGTGCGCTTTAA 60.726 40.000 9.73 0.00 38.14 1.52
1904 2142 4.600012 AGTTGCTGTAATATTCGTGTGC 57.400 40.909 0.00 0.00 0.00 4.57
1905 2143 6.040247 TCCTAGTTGCTGTAATATTCGTGTG 58.960 40.000 0.00 0.00 0.00 3.82
1906 2144 6.216801 TCCTAGTTGCTGTAATATTCGTGT 57.783 37.500 0.00 0.00 0.00 4.49
1915 2153 8.685838 AAACAAACTAATCCTAGTTGCTGTAA 57.314 30.769 0.00 0.00 45.75 2.41
1920 2158 7.136772 ACGAAAAACAAACTAATCCTAGTTGC 58.863 34.615 0.00 0.00 45.75 4.17
1927 2165 5.337773 GTGCGTACGAAAAACAAACTAATCC 59.662 40.000 21.65 0.00 0.00 3.01
1948 2186 1.766143 GAGTCCGCATTGATCCGTGC 61.766 60.000 8.85 8.85 37.97 5.34
1949 2187 1.482621 CGAGTCCGCATTGATCCGTG 61.483 60.000 0.00 0.00 0.00 4.94
1950 2188 1.226974 CGAGTCCGCATTGATCCGT 60.227 57.895 0.00 0.00 0.00 4.69
1951 2189 3.617824 CGAGTCCGCATTGATCCG 58.382 61.111 0.00 0.00 0.00 4.18
1986 2224 0.521735 CCAAGTGTTAAGGCTTCGGC 59.478 55.000 1.30 0.00 40.88 5.54
1987 2225 1.165270 CCCAAGTGTTAAGGCTTCGG 58.835 55.000 1.30 0.00 0.00 4.30
1988 2226 0.521735 GCCCAAGTGTTAAGGCTTCG 59.478 55.000 1.30 0.00 42.34 3.79
1989 2227 0.521735 CGCCCAAGTGTTAAGGCTTC 59.478 55.000 1.30 0.00 43.48 3.86
1990 2228 1.524008 GCGCCCAAGTGTTAAGGCTT 61.524 55.000 4.58 4.58 43.48 4.35
1991 2229 1.971695 GCGCCCAAGTGTTAAGGCT 60.972 57.895 0.00 0.00 43.48 4.58
1992 2230 2.566529 GCGCCCAAGTGTTAAGGC 59.433 61.111 0.00 0.00 42.18 4.35
1993 2231 2.686816 CGGCGCCCAAGTGTTAAGG 61.687 63.158 23.46 0.00 0.00 2.69
1994 2232 2.686816 CCGGCGCCCAAGTGTTAAG 61.687 63.158 23.46 1.66 0.00 1.85
1995 2233 2.670251 CCGGCGCCCAAGTGTTAA 60.670 61.111 23.46 0.00 0.00 2.01
1996 2234 4.708386 CCCGGCGCCCAAGTGTTA 62.708 66.667 23.46 0.00 0.00 2.41
2012 2250 3.540367 TTTCCCTTCGGCGTCCACC 62.540 63.158 6.85 0.00 0.00 4.61
2013 2251 1.167781 TTTTTCCCTTCGGCGTCCAC 61.168 55.000 6.85 0.00 0.00 4.02
2014 2252 1.148723 TTTTTCCCTTCGGCGTCCA 59.851 52.632 6.85 0.00 0.00 4.02
2015 2253 1.167781 TGTTTTTCCCTTCGGCGTCC 61.168 55.000 6.85 0.00 0.00 4.79
2016 2254 0.237498 CTGTTTTTCCCTTCGGCGTC 59.763 55.000 6.85 0.00 0.00 5.19
2017 2255 1.170290 CCTGTTTTTCCCTTCGGCGT 61.170 55.000 6.85 0.00 0.00 5.68
2018 2256 1.579429 CCTGTTTTTCCCTTCGGCG 59.421 57.895 0.00 0.00 0.00 6.46
2019 2257 1.532604 CCCCTGTTTTTCCCTTCGGC 61.533 60.000 0.00 0.00 0.00 5.54
2020 2258 0.178973 ACCCCTGTTTTTCCCTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
2021 2259 2.433436 CTACCCCTGTTTTTCCCTTCG 58.567 52.381 0.00 0.00 0.00 3.79
2022 2260 2.377531 TCCTACCCCTGTTTTTCCCTTC 59.622 50.000 0.00 0.00 0.00 3.46
2023 2261 2.378886 CTCCTACCCCTGTTTTTCCCTT 59.621 50.000 0.00 0.00 0.00 3.95
2024 2262 1.993301 CTCCTACCCCTGTTTTTCCCT 59.007 52.381 0.00 0.00 0.00 4.20
2025 2263 1.616187 GCTCCTACCCCTGTTTTTCCC 60.616 57.143 0.00 0.00 0.00 3.97
2026 2264 1.074889 TGCTCCTACCCCTGTTTTTCC 59.925 52.381 0.00 0.00 0.00 3.13
2027 2265 2.160205 GTGCTCCTACCCCTGTTTTTC 58.840 52.381 0.00 0.00 0.00 2.29
2028 2266 1.544759 CGTGCTCCTACCCCTGTTTTT 60.545 52.381 0.00 0.00 0.00 1.94
2029 2267 0.036306 CGTGCTCCTACCCCTGTTTT 59.964 55.000 0.00 0.00 0.00 2.43
2030 2268 1.125711 ACGTGCTCCTACCCCTGTTT 61.126 55.000 0.00 0.00 0.00 2.83
2031 2269 0.251922 TACGTGCTCCTACCCCTGTT 60.252 55.000 0.00 0.00 0.00 3.16
2032 2270 0.251922 TTACGTGCTCCTACCCCTGT 60.252 55.000 0.00 0.00 0.00 4.00
2033 2271 0.899720 TTTACGTGCTCCTACCCCTG 59.100 55.000 0.00 0.00 0.00 4.45
2034 2272 1.875488 ATTTACGTGCTCCTACCCCT 58.125 50.000 0.00 0.00 0.00 4.79
2035 2273 2.285977 CAATTTACGTGCTCCTACCCC 58.714 52.381 0.00 0.00 0.00 4.95
2036 2274 2.093341 TCCAATTTACGTGCTCCTACCC 60.093 50.000 0.00 0.00 0.00 3.69
2037 2275 3.255969 TCCAATTTACGTGCTCCTACC 57.744 47.619 0.00 0.00 0.00 3.18
2038 2276 5.813080 AATTCCAATTTACGTGCTCCTAC 57.187 39.130 0.00 0.00 0.00 3.18
2039 2277 7.825270 TCTTAAATTCCAATTTACGTGCTCCTA 59.175 33.333 0.00 0.00 39.75 2.94
2040 2278 6.657541 TCTTAAATTCCAATTTACGTGCTCCT 59.342 34.615 0.00 0.00 39.75 3.69
2041 2279 6.848451 TCTTAAATTCCAATTTACGTGCTCC 58.152 36.000 0.00 0.00 39.75 4.70
2042 2280 8.736751 TTTCTTAAATTCCAATTTACGTGCTC 57.263 30.769 0.00 0.00 39.75 4.26
2043 2281 9.705290 ATTTTCTTAAATTCCAATTTACGTGCT 57.295 25.926 0.00 0.00 39.75 4.40
2057 2295 8.306761 CACAGGTGCCTAGAATTTTCTTAAATT 58.693 33.333 0.00 0.00 44.53 1.82
2058 2296 7.830739 CACAGGTGCCTAGAATTTTCTTAAAT 58.169 34.615 0.00 0.00 38.70 1.40
2059 2297 7.214467 CACAGGTGCCTAGAATTTTCTTAAA 57.786 36.000 0.00 0.00 38.70 1.52
2060 2298 6.817765 CACAGGTGCCTAGAATTTTCTTAA 57.182 37.500 0.00 0.00 38.70 1.85
2076 2314 2.859273 GATCTGTCCGGGCACAGGTG 62.859 65.000 19.97 4.75 46.16 4.00
2077 2315 2.607750 ATCTGTCCGGGCACAGGT 60.608 61.111 19.97 12.56 46.16 4.00
2079 2317 2.187946 GGATCTGTCCGGGCACAG 59.812 66.667 3.51 11.28 44.61 3.66
2087 2325 6.705863 AGCTTATTTCAAATGGATCTGTCC 57.294 37.500 0.00 0.00 45.31 4.02
2088 2326 6.976925 CCAAGCTTATTTCAAATGGATCTGTC 59.023 38.462 0.00 0.00 0.00 3.51
2089 2327 6.664816 TCCAAGCTTATTTCAAATGGATCTGT 59.335 34.615 0.00 0.00 30.90 3.41
2090 2328 7.104043 TCCAAGCTTATTTCAAATGGATCTG 57.896 36.000 0.00 0.00 30.90 2.90
2091 2329 6.894103 ACTCCAAGCTTATTTCAAATGGATCT 59.106 34.615 0.00 0.00 35.15 2.75
2092 2330 7.105241 ACTCCAAGCTTATTTCAAATGGATC 57.895 36.000 0.00 0.00 35.15 3.36
2093 2331 7.068716 GGTACTCCAAGCTTATTTCAAATGGAT 59.931 37.037 0.00 0.00 35.15 3.41
2094 2332 6.377146 GGTACTCCAAGCTTATTTCAAATGGA 59.623 38.462 0.00 0.00 34.52 3.41
2095 2333 6.152661 TGGTACTCCAAGCTTATTTCAAATGG 59.847 38.462 0.00 0.00 41.25 3.16
2096 2334 7.156876 TGGTACTCCAAGCTTATTTCAAATG 57.843 36.000 0.00 0.00 41.25 2.32
2111 2349 7.595819 AAGATGAAATTTGTTTGGTACTCCA 57.404 32.000 0.00 0.00 42.66 3.86
2112 2350 7.926018 ACAAAGATGAAATTTGTTTGGTACTCC 59.074 33.333 0.00 0.00 46.04 3.85
2113 2351 8.871686 ACAAAGATGAAATTTGTTTGGTACTC 57.128 30.769 0.00 0.00 46.04 2.59
2213 2454 2.247111 AGAGAGGTCATGGATGAGAGGT 59.753 50.000 0.00 0.00 37.51 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.