Multiple sequence alignment - TraesCS1A01G281800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G281800 chr1A 100.000 5213 0 0 1 5213 480545701 480550913 0.000000e+00 9627.0
1 TraesCS1A01G281800 chr1A 87.520 617 72 5 5 617 356216911 356216296 0.000000e+00 708.0
2 TraesCS1A01G281800 chr1A 86.471 170 22 1 613 782 397088815 397088647 8.910000e-43 185.0
3 TraesCS1A01G281800 chr1A 100.000 44 0 0 4536 4579 480550192 480550235 1.200000e-11 82.4
4 TraesCS1A01G281800 chr1A 100.000 44 0 0 4492 4535 480550236 480550279 1.200000e-11 82.4
5 TraesCS1A01G281800 chr1D 94.443 3455 117 34 784 4216 379452950 379456351 0.000000e+00 5247.0
6 TraesCS1A01G281800 chr1D 93.313 329 17 2 4868 5196 379459102 379459425 1.020000e-131 481.0
7 TraesCS1A01G281800 chr1D 89.925 268 13 6 4617 4881 379457300 379457556 3.010000e-87 333.0
8 TraesCS1A01G281800 chr1D 90.574 244 19 2 4215 4458 379456509 379456748 2.340000e-83 320.0
9 TraesCS1A01G281800 chr1B 89.840 1998 107 35 788 2755 508540866 508542797 0.000000e+00 2477.0
10 TraesCS1A01G281800 chr1B 95.672 1109 42 6 3352 4458 508543585 508544689 0.000000e+00 1777.0
11 TraesCS1A01G281800 chr1B 91.032 591 28 12 2772 3353 508542947 508543521 0.000000e+00 774.0
12 TraesCS1A01G281800 chr1B 90.237 379 24 4 4818 5196 508545068 508545433 2.820000e-132 483.0
13 TraesCS1A01G281800 chr1B 91.503 306 10 4 4536 4840 508544746 508545036 1.750000e-109 407.0
14 TraesCS1A01G281800 chr5A 89.789 617 59 4 5 617 545221389 545222005 0.000000e+00 787.0
15 TraesCS1A01G281800 chr5A 89.919 615 57 5 3 613 545264399 545265012 0.000000e+00 787.0
16 TraesCS1A01G281800 chr5A 88.817 617 64 4 1 613 270836645 270836030 0.000000e+00 752.0
17 TraesCS1A01G281800 chr5A 87.981 624 62 9 5 617 270883853 270883232 0.000000e+00 725.0
18 TraesCS1A01G281800 chr5A 87.439 613 73 4 3 613 526856477 526855867 0.000000e+00 702.0
19 TraesCS1A01G281800 chr5A 91.228 171 15 0 613 783 514281564 514281734 3.140000e-57 233.0
20 TraesCS1A01G281800 chr3A 88.431 631 59 8 4 623 210947108 210946481 0.000000e+00 749.0
21 TraesCS1A01G281800 chr7A 88.245 621 64 6 3 616 496001357 496000739 0.000000e+00 734.0
22 TraesCS1A01G281800 chr4A 88.331 617 65 7 5 616 522514243 522513629 0.000000e+00 734.0
23 TraesCS1A01G281800 chr2D 95.294 170 8 0 613 782 37528713 37528882 2.390000e-68 270.0
24 TraesCS1A01G281800 chr2D 86.471 170 22 1 613 782 275001710 275001878 8.910000e-43 185.0
25 TraesCS1A01G281800 chr7D 92.398 171 12 1 613 782 433884248 433884418 5.220000e-60 243.0
26 TraesCS1A01G281800 chr7D 88.235 170 19 1 613 782 472812079 472811911 8.850000e-48 202.0
27 TraesCS1A01G281800 chr6B 91.765 170 12 1 613 782 648615887 648615720 8.730000e-58 235.0
28 TraesCS1A01G281800 chr6B 89.714 175 15 3 613 787 648248814 648248643 2.440000e-53 220.0
29 TraesCS1A01G281800 chr7B 86.857 175 22 1 613 787 726140500 726140327 1.480000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G281800 chr1A 480545701 480550913 5212 False 3263.933333 9627 100.00000 1 5213 3 chr1A.!!$F1 5212
1 TraesCS1A01G281800 chr1A 356216296 356216911 615 True 708.000000 708 87.52000 5 617 1 chr1A.!!$R1 612
2 TraesCS1A01G281800 chr1D 379452950 379459425 6475 False 1595.250000 5247 92.06375 784 5196 4 chr1D.!!$F1 4412
3 TraesCS1A01G281800 chr1B 508540866 508545433 4567 False 1183.600000 2477 91.65680 788 5196 5 chr1B.!!$F1 4408
4 TraesCS1A01G281800 chr5A 545221389 545222005 616 False 787.000000 787 89.78900 5 617 1 chr5A.!!$F2 612
5 TraesCS1A01G281800 chr5A 545264399 545265012 613 False 787.000000 787 89.91900 3 613 1 chr5A.!!$F3 610
6 TraesCS1A01G281800 chr5A 270836030 270836645 615 True 752.000000 752 88.81700 1 613 1 chr5A.!!$R1 612
7 TraesCS1A01G281800 chr5A 270883232 270883853 621 True 725.000000 725 87.98100 5 617 1 chr5A.!!$R2 612
8 TraesCS1A01G281800 chr5A 526855867 526856477 610 True 702.000000 702 87.43900 3 613 1 chr5A.!!$R3 610
9 TraesCS1A01G281800 chr3A 210946481 210947108 627 True 749.000000 749 88.43100 4 623 1 chr3A.!!$R1 619
10 TraesCS1A01G281800 chr7A 496000739 496001357 618 True 734.000000 734 88.24500 3 616 1 chr7A.!!$R1 613
11 TraesCS1A01G281800 chr4A 522513629 522514243 614 True 734.000000 734 88.33100 5 616 1 chr4A.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 730 0.036164 TGGTTGGGTCAGTCGGAATG 59.964 55.000 0.00 0.0 0.00 2.67 F
816 831 0.036483 GGGGCGCCATGTTTGATTTT 60.036 50.000 30.85 0.0 0.00 1.82 F
1645 1671 1.138069 TGCATACACGATGTACCAGGG 59.862 52.381 0.00 0.0 35.42 4.45 F
1684 1710 0.468214 TTGGTTTGGTGGGATGCGAA 60.468 50.000 0.00 0.0 0.00 4.70 F
1688 1714 0.893270 TTTGGTGGGATGCGAAGTGG 60.893 55.000 0.00 0.0 0.00 4.00 F
2049 2088 1.063469 CTACGGCGCACCATTTTTAGG 59.937 52.381 10.83 0.0 34.57 2.69 F
3803 4077 1.541233 CCTTCTGAACAACTCCACGCT 60.541 52.381 0.00 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1666 0.107214 ATCCGCACACATTACCCTGG 60.107 55.000 0.00 0.0 0.00 4.45 R
1672 1698 0.468226 TATCCACTTCGCATCCCACC 59.532 55.000 0.00 0.0 0.00 4.61 R
2854 3052 1.067516 CAAGTGCAAAAGTGGGTGAGG 59.932 52.381 0.00 0.0 0.00 3.86 R
2912 3110 3.509967 TCACAGATCGAAAAGTAGGCTCA 59.490 43.478 0.00 0.0 0.00 4.26 R
3424 3697 5.749462 AGAATAGAGTGCTAGCCAAAACAT 58.251 37.500 13.29 0.0 0.00 2.71 R
3833 4107 0.249031 GTGTCAAACAGCTTGCCCAC 60.249 55.000 0.00 0.0 34.76 4.61 R
4849 5781 1.062198 TGATGTGAGATGGGGCCTAGA 60.062 52.381 0.84 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 0.982852 TGCTATGGTGGTGGCTAGCT 60.983 55.000 15.72 0.00 37.92 3.32
147 151 1.289530 AGTTTGAAGGGGGACAACCAA 59.710 47.619 0.00 0.00 42.91 3.67
159 163 5.258051 GGGGACAACCAATACAAGTTATCA 58.742 41.667 0.00 0.00 42.91 2.15
163 167 7.285401 GGGACAACCAATACAAGTTATCATGAT 59.715 37.037 13.81 13.81 39.85 2.45
180 184 3.410631 TGATAAAAGGTGGTCTTCGCA 57.589 42.857 0.00 0.00 33.94 5.10
194 198 2.233676 TCTTCGCATGCCAAAGACTCTA 59.766 45.455 20.58 4.55 0.00 2.43
197 201 2.758423 TCGCATGCCAAAGACTCTAGTA 59.242 45.455 13.15 0.00 0.00 1.82
268 280 4.156008 GTCTTGTTGCACCGATAAGGAAAT 59.844 41.667 0.00 0.00 45.00 2.17
527 540 3.618594 GTCTTGAATTGTCGCTGCAGATA 59.381 43.478 20.43 0.05 0.00 1.98
536 549 2.912624 GCTGCAGATAATGGGCCGC 61.913 63.158 20.43 0.00 0.00 6.53
617 632 0.902531 CCCAGGACACCGACATTAGT 59.097 55.000 0.00 0.00 0.00 2.24
619 634 1.548719 CCAGGACACCGACATTAGTCA 59.451 52.381 0.00 0.00 45.23 3.41
623 638 3.513912 AGGACACCGACATTAGTCATGAA 59.486 43.478 0.00 0.00 45.23 2.57
624 639 4.162320 AGGACACCGACATTAGTCATGAAT 59.838 41.667 0.00 0.00 45.23 2.57
625 640 4.876107 GGACACCGACATTAGTCATGAATT 59.124 41.667 0.00 0.00 45.23 2.17
626 641 5.354234 GGACACCGACATTAGTCATGAATTT 59.646 40.000 0.00 0.00 45.23 1.82
627 642 6.537301 GGACACCGACATTAGTCATGAATTTA 59.463 38.462 0.00 0.00 45.23 1.40
628 643 7.254455 GGACACCGACATTAGTCATGAATTTAG 60.254 40.741 0.00 0.00 45.23 1.85
629 644 6.538742 ACACCGACATTAGTCATGAATTTAGG 59.461 38.462 0.00 0.00 45.23 2.69
630 645 6.761242 CACCGACATTAGTCATGAATTTAGGA 59.239 38.462 0.00 0.00 45.23 2.94
631 646 6.986817 ACCGACATTAGTCATGAATTTAGGAG 59.013 38.462 0.00 0.00 45.23 3.69
632 647 6.073548 CCGACATTAGTCATGAATTTAGGAGC 60.074 42.308 0.00 0.00 45.23 4.70
633 648 6.703607 CGACATTAGTCATGAATTTAGGAGCT 59.296 38.462 0.00 0.00 45.23 4.09
634 649 7.095857 CGACATTAGTCATGAATTTAGGAGCTC 60.096 40.741 4.71 4.71 45.23 4.09
635 650 6.703607 ACATTAGTCATGAATTTAGGAGCTCG 59.296 38.462 7.83 0.00 36.24 5.03
636 651 6.465439 TTAGTCATGAATTTAGGAGCTCGA 57.535 37.500 7.83 0.00 0.00 4.04
637 652 5.344743 AGTCATGAATTTAGGAGCTCGAA 57.655 39.130 7.83 1.24 0.00 3.71
638 653 5.923204 AGTCATGAATTTAGGAGCTCGAAT 58.077 37.500 7.83 5.28 0.00 3.34
639 654 5.757320 AGTCATGAATTTAGGAGCTCGAATG 59.243 40.000 7.83 2.96 0.00 2.67
640 655 5.525378 GTCATGAATTTAGGAGCTCGAATGT 59.475 40.000 7.83 0.00 0.00 2.71
641 656 5.755375 TCATGAATTTAGGAGCTCGAATGTC 59.245 40.000 7.83 5.74 0.00 3.06
642 657 4.112634 TGAATTTAGGAGCTCGAATGTCG 58.887 43.478 7.83 0.00 42.10 4.35
653 668 3.203161 TCGAATGTCGAGACTCACAAG 57.797 47.619 2.82 3.66 44.82 3.16
654 669 1.651138 CGAATGTCGAGACTCACAAGC 59.349 52.381 2.82 2.93 43.74 4.01
655 670 2.669670 CGAATGTCGAGACTCACAAGCT 60.670 50.000 2.82 0.00 43.74 3.74
656 671 2.645730 ATGTCGAGACTCACAAGCTC 57.354 50.000 2.82 0.00 0.00 4.09
657 672 1.318576 TGTCGAGACTCACAAGCTCA 58.681 50.000 2.82 0.00 0.00 4.26
658 673 1.001268 TGTCGAGACTCACAAGCTCAC 60.001 52.381 2.82 0.00 0.00 3.51
659 674 0.238553 TCGAGACTCACAAGCTCACG 59.761 55.000 2.82 0.00 0.00 4.35
660 675 0.238553 CGAGACTCACAAGCTCACGA 59.761 55.000 2.82 0.00 0.00 4.35
661 676 1.335051 CGAGACTCACAAGCTCACGAA 60.335 52.381 2.82 0.00 0.00 3.85
662 677 2.323959 GAGACTCACAAGCTCACGAAG 58.676 52.381 0.00 0.00 0.00 3.79
674 689 3.599046 CTCACGAAGCATGCTTTATCC 57.401 47.619 32.36 18.94 36.26 2.59
675 690 2.288666 TCACGAAGCATGCTTTATCCC 58.711 47.619 32.36 18.58 36.26 3.85
676 691 2.092968 TCACGAAGCATGCTTTATCCCT 60.093 45.455 32.36 10.16 36.26 4.20
677 692 3.133901 TCACGAAGCATGCTTTATCCCTA 59.866 43.478 32.36 12.84 36.26 3.53
678 693 3.248602 CACGAAGCATGCTTTATCCCTAC 59.751 47.826 32.36 16.49 36.26 3.18
679 694 2.808543 CGAAGCATGCTTTATCCCTACC 59.191 50.000 32.36 15.81 36.26 3.18
680 695 2.550830 AGCATGCTTTATCCCTACCG 57.449 50.000 16.30 0.00 0.00 4.02
681 696 1.072331 AGCATGCTTTATCCCTACCGG 59.928 52.381 16.30 0.00 0.00 5.28
682 697 1.523758 CATGCTTTATCCCTACCGGC 58.476 55.000 0.00 0.00 0.00 6.13
683 698 1.072331 CATGCTTTATCCCTACCGGCT 59.928 52.381 0.00 0.00 0.00 5.52
684 699 2.091098 TGCTTTATCCCTACCGGCTA 57.909 50.000 0.00 0.00 0.00 3.93
685 700 1.968493 TGCTTTATCCCTACCGGCTAG 59.032 52.381 0.00 2.45 0.00 3.42
686 701 1.337917 GCTTTATCCCTACCGGCTAGC 60.338 57.143 6.04 6.04 0.00 3.42
687 702 1.968493 CTTTATCCCTACCGGCTAGCA 59.032 52.381 18.24 0.00 0.00 3.49
688 703 1.629043 TTATCCCTACCGGCTAGCAG 58.371 55.000 18.24 13.09 0.00 4.24
689 704 0.251653 TATCCCTACCGGCTAGCAGG 60.252 60.000 29.55 29.55 37.31 4.85
690 705 3.930012 CCCTACCGGCTAGCAGGC 61.930 72.222 30.83 6.60 37.44 4.85
691 706 3.154473 CCTACCGGCTAGCAGGCA 61.154 66.667 30.83 19.44 41.44 4.75
692 707 2.511452 CCTACCGGCTAGCAGGCAT 61.511 63.158 30.83 16.82 41.44 4.40
693 708 1.301244 CTACCGGCTAGCAGGCATG 60.301 63.158 30.83 17.97 41.44 4.06
694 709 2.032860 CTACCGGCTAGCAGGCATGT 62.033 60.000 30.83 15.77 41.44 3.21
695 710 2.310327 TACCGGCTAGCAGGCATGTG 62.310 60.000 30.83 9.18 41.44 3.21
696 711 2.124983 CGGCTAGCAGGCATGTGT 60.125 61.111 18.24 0.00 41.44 3.72
697 712 2.466982 CGGCTAGCAGGCATGTGTG 61.467 63.158 18.24 0.00 41.44 3.82
698 713 2.117156 GGCTAGCAGGCATGTGTGG 61.117 63.158 18.24 0.00 40.97 4.17
699 714 1.377725 GCTAGCAGGCATGTGTGGT 60.378 57.895 10.63 6.42 0.00 4.16
700 715 0.962356 GCTAGCAGGCATGTGTGGTT 60.962 55.000 10.63 0.00 0.00 3.67
701 716 0.806868 CTAGCAGGCATGTGTGGTTG 59.193 55.000 0.00 2.10 0.00 3.77
702 717 0.608856 TAGCAGGCATGTGTGGTTGG 60.609 55.000 0.00 0.00 0.00 3.77
703 718 2.934570 GCAGGCATGTGTGGTTGGG 61.935 63.158 0.00 0.00 0.00 4.12
704 719 1.531365 CAGGCATGTGTGGTTGGGT 60.531 57.895 0.00 0.00 0.00 4.51
705 720 1.228552 AGGCATGTGTGGTTGGGTC 60.229 57.895 0.00 0.00 0.00 4.46
706 721 1.530419 GGCATGTGTGGTTGGGTCA 60.530 57.895 0.00 0.00 0.00 4.02
707 722 1.526575 GGCATGTGTGGTTGGGTCAG 61.527 60.000 0.00 0.00 0.00 3.51
708 723 0.823356 GCATGTGTGGTTGGGTCAGT 60.823 55.000 0.00 0.00 0.00 3.41
709 724 1.238439 CATGTGTGGTTGGGTCAGTC 58.762 55.000 0.00 0.00 0.00 3.51
710 725 0.250295 ATGTGTGGTTGGGTCAGTCG 60.250 55.000 0.00 0.00 0.00 4.18
711 726 1.597027 GTGTGGTTGGGTCAGTCGG 60.597 63.158 0.00 0.00 0.00 4.79
712 727 1.762858 TGTGGTTGGGTCAGTCGGA 60.763 57.895 0.00 0.00 0.00 4.55
713 728 1.338890 TGTGGTTGGGTCAGTCGGAA 61.339 55.000 0.00 0.00 0.00 4.30
714 729 0.036306 GTGGTTGGGTCAGTCGGAAT 59.964 55.000 0.00 0.00 0.00 3.01
715 730 0.036164 TGGTTGGGTCAGTCGGAATG 59.964 55.000 0.00 0.00 0.00 2.67
716 731 0.323629 GGTTGGGTCAGTCGGAATGA 59.676 55.000 3.70 3.70 0.00 2.57
730 745 2.000447 GGAATGACTTCCTTTCGTCCG 59.000 52.381 0.00 0.00 46.44 4.79
731 746 2.612221 GGAATGACTTCCTTTCGTCCGT 60.612 50.000 0.00 0.00 46.44 4.69
732 747 2.080286 ATGACTTCCTTTCGTCCGTG 57.920 50.000 0.00 0.00 0.00 4.94
733 748 0.748450 TGACTTCCTTTCGTCCGTGT 59.252 50.000 0.00 0.00 0.00 4.49
734 749 1.955778 TGACTTCCTTTCGTCCGTGTA 59.044 47.619 0.00 0.00 0.00 2.90
735 750 2.361757 TGACTTCCTTTCGTCCGTGTAA 59.638 45.455 0.00 0.00 0.00 2.41
736 751 3.181477 TGACTTCCTTTCGTCCGTGTAAA 60.181 43.478 0.00 0.00 0.00 2.01
737 752 3.126073 ACTTCCTTTCGTCCGTGTAAAC 58.874 45.455 0.00 0.00 0.00 2.01
738 753 2.886862 TCCTTTCGTCCGTGTAAACA 57.113 45.000 0.00 0.00 0.00 2.83
739 754 3.389925 TCCTTTCGTCCGTGTAAACAT 57.610 42.857 0.00 0.00 0.00 2.71
740 755 3.731089 TCCTTTCGTCCGTGTAAACATT 58.269 40.909 0.00 0.00 0.00 2.71
741 756 3.495377 TCCTTTCGTCCGTGTAAACATTG 59.505 43.478 0.00 0.00 0.00 2.82
742 757 3.249080 CCTTTCGTCCGTGTAAACATTGT 59.751 43.478 0.00 0.00 0.00 2.71
743 758 3.863396 TTCGTCCGTGTAAACATTGTG 57.137 42.857 0.00 0.00 0.00 3.33
744 759 3.095102 TCGTCCGTGTAAACATTGTGA 57.905 42.857 0.00 0.00 0.00 3.58
745 760 2.796031 TCGTCCGTGTAAACATTGTGAC 59.204 45.455 0.00 0.00 0.00 3.67
746 761 2.409244 CGTCCGTGTAAACATTGTGACG 60.409 50.000 8.54 8.54 38.42 4.35
747 762 2.096614 GTCCGTGTAAACATTGTGACGG 60.097 50.000 17.41 17.41 46.09 4.79
748 763 1.399215 CCGTGTAAACATTGTGACGGC 60.399 52.381 13.63 0.00 39.84 5.68
749 764 1.529438 CGTGTAAACATTGTGACGGCT 59.471 47.619 0.00 0.00 0.00 5.52
750 765 2.661709 CGTGTAAACATTGTGACGGCTG 60.662 50.000 0.00 0.00 0.00 4.85
751 766 2.546368 GTGTAAACATTGTGACGGCTGA 59.454 45.455 0.00 0.00 0.00 4.26
752 767 3.002862 GTGTAAACATTGTGACGGCTGAA 59.997 43.478 0.00 0.00 0.00 3.02
753 768 3.818210 TGTAAACATTGTGACGGCTGAAT 59.182 39.130 0.00 0.00 0.00 2.57
754 769 4.998033 TGTAAACATTGTGACGGCTGAATA 59.002 37.500 0.00 0.00 0.00 1.75
755 770 5.470437 TGTAAACATTGTGACGGCTGAATAA 59.530 36.000 0.00 0.00 0.00 1.40
756 771 5.446143 AAACATTGTGACGGCTGAATAAA 57.554 34.783 0.00 0.00 0.00 1.40
757 772 5.446143 AACATTGTGACGGCTGAATAAAA 57.554 34.783 0.00 0.00 0.00 1.52
758 773 5.446143 ACATTGTGACGGCTGAATAAAAA 57.554 34.783 0.00 0.00 0.00 1.94
759 774 5.460646 ACATTGTGACGGCTGAATAAAAAG 58.539 37.500 0.00 0.00 0.00 2.27
760 775 3.552604 TGTGACGGCTGAATAAAAAGC 57.447 42.857 0.00 0.00 38.76 3.51
761 776 3.146066 TGTGACGGCTGAATAAAAAGCT 58.854 40.909 0.00 0.00 39.46 3.74
762 777 3.568007 TGTGACGGCTGAATAAAAAGCTT 59.432 39.130 0.00 0.00 39.46 3.74
763 778 4.037446 TGTGACGGCTGAATAAAAAGCTTT 59.963 37.500 5.69 5.69 39.46 3.51
764 779 4.382754 GTGACGGCTGAATAAAAAGCTTTG 59.617 41.667 13.54 0.00 39.46 2.77
765 780 3.913089 ACGGCTGAATAAAAAGCTTTGG 58.087 40.909 13.54 0.00 39.46 3.28
766 781 3.572255 ACGGCTGAATAAAAAGCTTTGGA 59.428 39.130 13.54 3.97 39.46 3.53
767 782 4.168760 CGGCTGAATAAAAAGCTTTGGAG 58.831 43.478 13.54 4.05 39.46 3.86
768 783 4.321230 CGGCTGAATAAAAAGCTTTGGAGT 60.321 41.667 13.54 2.65 39.46 3.85
769 784 5.541845 GGCTGAATAAAAAGCTTTGGAGTT 58.458 37.500 13.54 5.76 39.46 3.01
770 785 5.991606 GGCTGAATAAAAAGCTTTGGAGTTT 59.008 36.000 13.54 5.37 39.46 2.66
771 786 6.073602 GGCTGAATAAAAAGCTTTGGAGTTTG 60.074 38.462 13.54 3.28 39.46 2.93
772 787 6.479990 GCTGAATAAAAAGCTTTGGAGTTTGT 59.520 34.615 13.54 0.00 36.47 2.83
773 788 7.306807 GCTGAATAAAAAGCTTTGGAGTTTGTC 60.307 37.037 13.54 5.93 36.47 3.18
774 789 7.781056 TGAATAAAAAGCTTTGGAGTTTGTCT 58.219 30.769 13.54 0.00 0.00 3.41
775 790 8.908903 TGAATAAAAAGCTTTGGAGTTTGTCTA 58.091 29.630 13.54 0.00 0.00 2.59
776 791 9.744468 GAATAAAAAGCTTTGGAGTTTGTCTAA 57.256 29.630 13.54 0.00 0.00 2.10
779 794 8.840833 AAAAAGCTTTGGAGTTTGTCTAAAAA 57.159 26.923 13.54 0.00 35.40 1.94
816 831 0.036483 GGGGCGCCATGTTTGATTTT 60.036 50.000 30.85 0.00 0.00 1.82
916 934 2.031420 GCCACACGAGGGTTTCTAAAAC 60.031 50.000 0.00 0.00 0.00 2.43
917 935 3.207778 CCACACGAGGGTTTCTAAAACA 58.792 45.455 5.07 0.00 0.00 2.83
918 936 3.628487 CCACACGAGGGTTTCTAAAACAA 59.372 43.478 5.07 0.00 0.00 2.83
919 937 4.096682 CCACACGAGGGTTTCTAAAACAAA 59.903 41.667 5.07 0.00 0.00 2.83
920 938 5.393243 CCACACGAGGGTTTCTAAAACAAAA 60.393 40.000 5.07 0.00 0.00 2.44
921 939 5.513849 CACACGAGGGTTTCTAAAACAAAAC 59.486 40.000 5.07 0.00 35.19 2.43
922 940 5.183522 ACACGAGGGTTTCTAAAACAAAACA 59.816 36.000 5.07 0.00 37.16 2.83
923 941 6.094061 CACGAGGGTTTCTAAAACAAAACAA 58.906 36.000 5.07 0.00 37.16 2.83
924 942 6.586844 CACGAGGGTTTCTAAAACAAAACAAA 59.413 34.615 5.07 0.00 37.16 2.83
925 943 7.116519 CACGAGGGTTTCTAAAACAAAACAAAA 59.883 33.333 5.07 0.00 37.16 2.44
926 944 7.656542 ACGAGGGTTTCTAAAACAAAACAAAAA 59.343 29.630 5.07 0.00 37.16 1.94
1285 1311 1.168714 GTTGTTGAGCTGGGGTGATC 58.831 55.000 0.00 0.00 0.00 2.92
1312 1338 2.360852 GCATCTGCAGGCTGTGGT 60.361 61.111 17.16 2.85 41.59 4.16
1428 1454 5.576774 GCTTGGTTGAGGTTACATTAATTGC 59.423 40.000 0.00 0.00 0.00 3.56
1513 1539 4.021925 GCTGCCAACGGAGGAGGT 62.022 66.667 0.00 0.00 0.00 3.85
1543 1569 3.140143 TCCAGGGAGTCCTCTAGGTAAT 58.860 50.000 9.58 0.00 42.67 1.89
1544 1570 3.117093 TCCAGGGAGTCCTCTAGGTAATG 60.117 52.174 9.58 0.00 42.67 1.90
1547 1573 4.342665 CAGGGAGTCCTCTAGGTAATGAAC 59.657 50.000 9.58 0.00 42.67 3.18
1554 1580 3.070302 CCTCTAGGTAATGAACTGGCCTC 59.930 52.174 3.32 0.00 0.00 4.70
1591 1617 2.747446 GCGTGTTCCATCCACAGTAATT 59.253 45.455 0.00 0.00 33.00 1.40
1625 1651 5.180868 GCAATATTCGAATGAATCCAGCTCT 59.819 40.000 20.87 0.00 43.70 4.09
1634 1660 1.863454 GAATCCAGCTCTGCATACACG 59.137 52.381 0.00 0.00 0.00 4.49
1640 1666 2.791560 CAGCTCTGCATACACGATGTAC 59.208 50.000 0.00 0.00 35.42 2.90
1645 1671 1.138069 TGCATACACGATGTACCAGGG 59.862 52.381 0.00 0.00 35.42 4.45
1651 1677 2.835764 ACACGATGTACCAGGGTAATGT 59.164 45.455 0.00 0.00 31.86 2.71
1661 1687 2.210116 CAGGGTAATGTGTGCGGATAC 58.790 52.381 0.00 0.00 0.00 2.24
1672 1698 3.672867 GTGTGCGGATACATTTTGGTTTG 59.327 43.478 0.00 0.00 32.43 2.93
1684 1710 0.468214 TTGGTTTGGTGGGATGCGAA 60.468 50.000 0.00 0.00 0.00 4.70
1688 1714 0.893270 TTTGGTGGGATGCGAAGTGG 60.893 55.000 0.00 0.00 0.00 4.00
1707 1733 7.653713 CGAAGTGGATATCTTACTTGCTTATGT 59.346 37.037 22.12 4.64 34.99 2.29
1730 1761 7.780064 TGTGATTGTATTTACATTCCAATGGG 58.220 34.615 0.00 0.00 40.70 4.00
1758 1789 9.099454 CAAGTGTAGGGTTTATAGATTTCAGTC 57.901 37.037 0.00 0.00 0.00 3.51
1761 1792 5.291905 AGGGTTTATAGATTTCAGTCCGG 57.708 43.478 0.00 0.00 0.00 5.14
1791 1830 5.278414 CCTGAGTATAGCTGTGATGTCTCTG 60.278 48.000 0.00 0.31 0.00 3.35
1814 1853 5.067674 TGGTGTGAGAAATCTTGAACAAAGG 59.932 40.000 0.00 0.00 36.46 3.11
1837 1876 2.440247 GCCTCCCCATGGTTTCCG 60.440 66.667 11.73 0.00 0.00 4.30
1841 1880 1.540367 TCCCCATGGTTTCCGTCCT 60.540 57.895 11.73 0.00 0.00 3.85
1856 1895 7.431249 GTTTCCGTCCTGATGTGATATTAGTA 58.569 38.462 0.00 0.00 0.00 1.82
1859 1898 6.719829 TCCGTCCTGATGTGATATTAGTATGT 59.280 38.462 0.00 0.00 0.00 2.29
1860 1899 7.886446 TCCGTCCTGATGTGATATTAGTATGTA 59.114 37.037 0.00 0.00 0.00 2.29
1861 1900 8.687242 CCGTCCTGATGTGATATTAGTATGTAT 58.313 37.037 0.00 0.00 0.00 2.29
1901 1940 6.072175 CCTGGTAATACTTTGTTAAAGCTGCA 60.072 38.462 1.02 0.00 42.27 4.41
1967 2006 4.569761 TGAGTCATAGAGATTGCGTACC 57.430 45.455 0.00 0.00 0.00 3.34
1975 2014 1.795286 GAGATTGCGTACCATAGCTGC 59.205 52.381 0.00 0.00 0.00 5.25
1993 2032 3.999046 CTGCTGTATGGAGCACATGATA 58.001 45.455 0.00 0.00 44.16 2.15
2049 2088 1.063469 CTACGGCGCACCATTTTTAGG 59.937 52.381 10.83 0.00 34.57 2.69
2110 2149 3.646162 TCTCCAGTCCAAAGAAAGCACTA 59.354 43.478 0.00 0.00 0.00 2.74
2112 2151 4.985538 TCCAGTCCAAAGAAAGCACTATT 58.014 39.130 0.00 0.00 0.00 1.73
2214 2253 6.782298 TTTTAAATTGCATGTGGTGATGTG 57.218 33.333 0.00 0.00 0.00 3.21
2233 2272 4.619973 TGTGGATGATGTTTCTTTTGCAC 58.380 39.130 0.00 0.00 0.00 4.57
2243 2282 4.021544 TGTTTCTTTTGCACCTGTTGTTCT 60.022 37.500 0.00 0.00 0.00 3.01
2252 2291 4.275689 TGCACCTGTTGTTCTATGTTGAAG 59.724 41.667 0.00 0.00 0.00 3.02
2257 2296 6.828785 ACCTGTTGTTCTATGTTGAAGTCTTT 59.171 34.615 0.00 0.00 0.00 2.52
2258 2297 7.134815 CCTGTTGTTCTATGTTGAAGTCTTTG 58.865 38.462 0.00 0.00 0.00 2.77
2451 2490 5.163723 CCTGACATGTAAGTGTATTGCCAAG 60.164 44.000 9.47 0.00 31.16 3.61
2569 2610 6.989155 ATATGGGCAATTCACAAAGATCAT 57.011 33.333 0.00 0.00 0.00 2.45
2829 3027 9.353999 CTAGCAACATAATTTTTAAGGGAACAC 57.646 33.333 0.00 0.00 0.00 3.32
2854 3052 8.718734 ACGACAAGTCATAATTTTAAGGAACTC 58.281 33.333 0.72 0.00 38.49 3.01
2884 3082 5.743872 CCACTTTTGCACTTGAGTTTCTTAC 59.256 40.000 0.00 0.00 0.00 2.34
2976 3175 2.379907 CAGGTATGGGCCCTTATGGATT 59.620 50.000 25.70 3.70 35.39 3.01
3054 3253 5.186996 TGCAAAGGAAAAGTGATCTGAAC 57.813 39.130 0.00 0.00 0.00 3.18
3323 3530 5.406175 CGTACCTTTTATTGAACTTCCGTGA 59.594 40.000 0.00 0.00 0.00 4.35
3424 3697 5.821097 TCCATGTAATGTTATGGTTGTCCA 58.179 37.500 0.00 0.00 44.81 4.02
3776 4050 6.449635 TCAATTCCACTTCCAAATATTCCG 57.550 37.500 0.00 0.00 0.00 4.30
3803 4077 1.541233 CCTTCTGAACAACTCCACGCT 60.541 52.381 0.00 0.00 0.00 5.07
3848 4122 2.362077 AGTAAAGTGGGCAAGCTGTTTG 59.638 45.455 0.00 0.00 39.88 2.93
3859 4133 3.428045 GCAAGCTGTTTGACACACTTCTT 60.428 43.478 8.50 0.00 39.21 2.52
4251 4685 3.743911 TGTGAGGTATGTTGTTTGCGTAG 59.256 43.478 0.00 0.00 0.00 3.51
4254 4688 2.991190 AGGTATGTTGTTTGCGTAGACG 59.009 45.455 0.00 0.00 43.27 4.18
4265 4699 0.101759 GCGTAGACGTGCATCCCTTA 59.898 55.000 0.00 0.00 42.22 2.69
4276 4710 3.694566 GTGCATCCCTTAGGTTTAACCAG 59.305 47.826 17.10 5.72 41.95 4.00
4299 4733 4.030977 GCGAACTGAACAAATCATGAATGC 59.969 41.667 0.00 0.00 37.44 3.56
4305 4739 7.844009 ACTGAACAAATCATGAATGCCTTAAT 58.156 30.769 0.00 0.00 37.44 1.40
4342 4776 7.568433 CGAAGCTTGAAAAAGTAGATATAGCC 58.432 38.462 2.10 0.00 0.00 3.93
4343 4777 7.439655 CGAAGCTTGAAAAAGTAGATATAGCCT 59.560 37.037 2.10 0.00 0.00 4.58
4344 4778 8.443953 AAGCTTGAAAAAGTAGATATAGCCTG 57.556 34.615 0.00 0.00 0.00 4.85
4382 4816 4.286808 TCTGGAATTTGGACTGAGATGACA 59.713 41.667 0.00 0.00 0.00 3.58
4436 4870 5.316167 TCAATCAAAGCTTGTCACACCTAT 58.684 37.500 0.00 0.00 0.00 2.57
4460 4917 6.245408 TGGTTGCCAGAAGTTTAATAGTGAT 58.755 36.000 0.00 0.00 0.00 3.06
4484 4941 5.008217 TGCTGCTTTTGTACAACTTTCGTAT 59.992 36.000 8.07 0.00 0.00 3.06
4485 4942 5.339611 GCTGCTTTTGTACAACTTTCGTATG 59.660 40.000 8.07 0.00 0.00 2.39
4502 4959 1.329256 ATGGATCGGAGGGAGTAACG 58.671 55.000 0.00 0.00 0.00 3.18
4525 4982 6.073222 ACGAACTTTGTAGGCTTATTCTTGTG 60.073 38.462 0.00 0.00 0.00 3.33
4526 4983 6.575162 AACTTTGTAGGCTTATTCTTGTGG 57.425 37.500 0.00 0.00 0.00 4.17
4527 4984 5.631119 ACTTTGTAGGCTTATTCTTGTGGT 58.369 37.500 0.00 0.00 0.00 4.16
4528 4985 6.775708 ACTTTGTAGGCTTATTCTTGTGGTA 58.224 36.000 0.00 0.00 0.00 3.25
4529 4986 7.228590 ACTTTGTAGGCTTATTCTTGTGGTAA 58.771 34.615 0.00 0.00 0.00 2.85
4530 4987 7.390718 ACTTTGTAGGCTTATTCTTGTGGTAAG 59.609 37.037 0.00 0.00 0.00 2.34
4531 4988 5.741011 TGTAGGCTTATTCTTGTGGTAAGG 58.259 41.667 0.00 0.00 0.00 2.69
4532 4989 3.621558 AGGCTTATTCTTGTGGTAAGGC 58.378 45.455 9.15 9.15 45.80 4.35
4533 4990 2.354821 GGCTTATTCTTGTGGTAAGGCG 59.645 50.000 0.00 0.00 39.90 5.52
4534 4991 2.223272 GCTTATTCTTGTGGTAAGGCGC 60.223 50.000 0.00 0.00 0.00 6.53
4535 4992 1.647346 TATTCTTGTGGTAAGGCGCG 58.353 50.000 0.00 0.00 0.00 6.86
4536 4993 0.036765 ATTCTTGTGGTAAGGCGCGA 60.037 50.000 12.10 0.00 0.00 5.87
4537 4994 0.669318 TTCTTGTGGTAAGGCGCGAG 60.669 55.000 12.10 0.00 0.00 5.03
4538 4995 2.047655 TTGTGGTAAGGCGCGAGG 60.048 61.111 12.10 0.00 0.00 4.63
4539 4996 3.599285 TTGTGGTAAGGCGCGAGGG 62.599 63.158 12.10 0.00 0.00 4.30
4540 4997 3.766691 GTGGTAAGGCGCGAGGGA 61.767 66.667 12.10 0.00 0.00 4.20
4541 4998 3.458163 TGGTAAGGCGCGAGGGAG 61.458 66.667 12.10 0.00 0.00 4.30
4542 4999 3.459063 GGTAAGGCGCGAGGGAGT 61.459 66.667 12.10 0.00 0.00 3.85
4543 5000 2.123428 GGTAAGGCGCGAGGGAGTA 61.123 63.158 12.10 0.00 0.00 2.59
4544 5001 1.669999 GGTAAGGCGCGAGGGAGTAA 61.670 60.000 12.10 0.00 0.00 2.24
4545 5002 0.527169 GTAAGGCGCGAGGGAGTAAC 60.527 60.000 12.10 0.00 0.00 2.50
4546 5003 1.996786 TAAGGCGCGAGGGAGTAACG 61.997 60.000 12.10 0.00 0.00 3.18
4547 5004 3.818787 GGCGCGAGGGAGTAACGA 61.819 66.667 12.10 0.00 0.00 3.85
4548 5005 2.180017 GCGCGAGGGAGTAACGAA 59.820 61.111 12.10 0.00 0.00 3.85
4549 5006 2.157073 GCGCGAGGGAGTAACGAAC 61.157 63.158 12.10 0.00 0.00 3.95
4550 5007 1.505353 CGCGAGGGAGTAACGAACT 59.495 57.895 0.00 0.00 42.80 3.01
4551 5008 0.109412 CGCGAGGGAGTAACGAACTT 60.109 55.000 0.00 0.00 39.07 2.66
4552 5009 1.668047 CGCGAGGGAGTAACGAACTTT 60.668 52.381 0.00 0.00 39.07 2.66
4553 5010 1.725164 GCGAGGGAGTAACGAACTTTG 59.275 52.381 0.00 0.00 39.07 2.77
4554 5011 2.865276 GCGAGGGAGTAACGAACTTTGT 60.865 50.000 0.00 0.00 39.07 2.83
4555 5012 3.612479 GCGAGGGAGTAACGAACTTTGTA 60.612 47.826 0.00 0.00 39.07 2.41
4556 5013 4.164294 CGAGGGAGTAACGAACTTTGTAG 58.836 47.826 0.00 0.00 39.07 2.74
4557 5014 4.492611 GAGGGAGTAACGAACTTTGTAGG 58.507 47.826 0.00 0.00 39.07 3.18
4558 5015 2.998670 GGGAGTAACGAACTTTGTAGGC 59.001 50.000 0.00 0.00 39.07 3.93
4559 5016 3.306571 GGGAGTAACGAACTTTGTAGGCT 60.307 47.826 0.00 0.00 39.07 4.58
4560 5017 4.313282 GGAGTAACGAACTTTGTAGGCTT 58.687 43.478 0.00 0.00 39.07 4.35
4561 5018 5.473039 GGAGTAACGAACTTTGTAGGCTTA 58.527 41.667 0.00 0.00 39.07 3.09
4562 5019 6.104665 GGAGTAACGAACTTTGTAGGCTTAT 58.895 40.000 0.00 0.00 39.07 1.73
4563 5020 6.592994 GGAGTAACGAACTTTGTAGGCTTATT 59.407 38.462 0.00 0.00 39.07 1.40
4564 5021 7.201504 GGAGTAACGAACTTTGTAGGCTTATTC 60.202 40.741 0.00 0.00 39.07 1.75
4565 5022 7.384477 AGTAACGAACTTTGTAGGCTTATTCT 58.616 34.615 0.00 0.00 33.35 2.40
4566 5023 7.876582 AGTAACGAACTTTGTAGGCTTATTCTT 59.123 33.333 0.00 0.00 33.35 2.52
4567 5024 6.481954 ACGAACTTTGTAGGCTTATTCTTG 57.518 37.500 0.00 0.00 0.00 3.02
4568 5025 5.995897 ACGAACTTTGTAGGCTTATTCTTGT 59.004 36.000 0.00 0.00 0.00 3.16
4569 5026 6.073222 ACGAACTTTGTAGGCTTATTCTTGTG 60.073 38.462 0.00 0.00 0.00 3.33
4570 5027 6.575162 AACTTTGTAGGCTTATTCTTGTGG 57.425 37.500 0.00 0.00 0.00 4.17
4571 5028 5.631119 ACTTTGTAGGCTTATTCTTGTGGT 58.369 37.500 0.00 0.00 0.00 4.16
4572 5029 6.775708 ACTTTGTAGGCTTATTCTTGTGGTA 58.224 36.000 0.00 0.00 0.00 3.25
4573 5030 7.228590 ACTTTGTAGGCTTATTCTTGTGGTAA 58.771 34.615 0.00 0.00 0.00 2.85
4574 5031 7.390718 ACTTTGTAGGCTTATTCTTGTGGTAAG 59.609 37.037 0.00 0.00 0.00 2.34
4575 5032 5.741011 TGTAGGCTTATTCTTGTGGTAAGG 58.259 41.667 0.00 0.00 0.00 2.69
4649 5528 6.029346 AGCATTTTTCACCAGGATTTGTAG 57.971 37.500 0.00 0.00 0.00 2.74
4650 5529 5.047092 AGCATTTTTCACCAGGATTTGTAGG 60.047 40.000 0.00 0.00 0.00 3.18
4651 5530 5.047377 GCATTTTTCACCAGGATTTGTAGGA 60.047 40.000 0.00 0.00 0.00 2.94
4652 5531 6.624423 CATTTTTCACCAGGATTTGTAGGAG 58.376 40.000 0.00 0.00 0.00 3.69
4653 5532 4.993705 TTTCACCAGGATTTGTAGGAGT 57.006 40.909 0.00 0.00 0.00 3.85
4654 5533 6.442541 TTTTCACCAGGATTTGTAGGAGTA 57.557 37.500 0.00 0.00 0.00 2.59
4680 5559 5.350365 TCGATAAATGTAGCACCAGTGAAAC 59.650 40.000 0.99 0.00 0.00 2.78
4749 5628 5.346822 GCTTAATCTTGACAACCAAATGCAG 59.653 40.000 0.00 0.00 33.76 4.41
4776 5655 1.350019 ACCAAGGCCCAGTACAACTAC 59.650 52.381 0.00 0.00 0.00 2.73
4815 5697 2.814805 AGTAGCATTTGCCTCCATGT 57.185 45.000 0.00 0.00 43.38 3.21
4823 5705 5.734200 GCATTTGCCTCCATGTTAACATGC 61.734 45.833 33.78 25.40 42.57 4.06
4836 5718 5.777802 TGTTAACATGCCACATAACAAAGG 58.222 37.500 3.59 0.00 35.84 3.11
4838 5720 4.953940 AACATGCCACATAACAAAGGTT 57.046 36.364 0.00 0.00 41.06 3.50
4842 5724 7.095695 ACATGCCACATAACAAAGGTTATAC 57.904 36.000 0.00 0.00 45.99 1.47
4843 5725 6.889722 ACATGCCACATAACAAAGGTTATACT 59.110 34.615 0.00 0.00 45.99 2.12
4873 5805 1.959282 GGCCCCATCTCACATCATTTC 59.041 52.381 0.00 0.00 0.00 2.17
4876 5808 2.621998 CCCCATCTCACATCATTTCTGC 59.378 50.000 0.00 0.00 0.00 4.26
4881 5813 3.603532 TCTCACATCATTTCTGCAGGAC 58.396 45.455 15.13 0.00 0.00 3.85
4942 7433 3.522759 TGTCCAAACTACCACCCAGATA 58.477 45.455 0.00 0.00 0.00 1.98
4999 7490 4.072839 CCCTTTACCAGACCTTTGAGTTC 58.927 47.826 0.00 0.00 0.00 3.01
5071 7562 2.440501 CATGAAGTCGGTAAAATGCGC 58.559 47.619 0.00 0.00 0.00 6.09
5130 7621 0.750911 CTGAAGCTCCCCAGGAATGC 60.751 60.000 0.00 0.00 0.00 3.56
5132 7623 3.350031 AAGCTCCCCAGGAATGCCG 62.350 63.158 0.00 0.00 39.96 5.69
5196 7687 1.203052 CAGCCATGACAAACCATCACC 59.797 52.381 0.00 0.00 0.00 4.02
5197 7688 0.171007 GCCATGACAAACCATCACCG 59.829 55.000 0.00 0.00 0.00 4.94
5198 7689 0.171007 CCATGACAAACCATCACCGC 59.829 55.000 0.00 0.00 0.00 5.68
5199 7690 0.880441 CATGACAAACCATCACCGCA 59.120 50.000 0.00 0.00 0.00 5.69
5200 7691 1.269174 CATGACAAACCATCACCGCAA 59.731 47.619 0.00 0.00 0.00 4.85
5201 7692 0.950836 TGACAAACCATCACCGCAAG 59.049 50.000 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 4.016479 AGGATCGGGGCCTCTATAAATAGA 60.016 45.833 0.00 0.02 37.76 1.98
80 84 4.130118 CCTAACATTTGGGAAGAGGATCG 58.870 47.826 0.00 0.00 34.52 3.69
147 151 9.920946 ACCACCTTTTATCATGATAACTTGTAT 57.079 29.630 24.55 11.74 33.40 2.29
159 163 3.950397 TGCGAAGACCACCTTTTATCAT 58.050 40.909 0.00 0.00 34.68 2.45
163 167 1.810151 GCATGCGAAGACCACCTTTTA 59.190 47.619 0.00 0.00 34.68 1.52
180 184 5.683509 GCATCACTACTAGAGTCTTTGGCAT 60.684 44.000 0.00 0.00 35.64 4.40
194 198 1.219124 CCACAGCGGCATCACTACT 59.781 57.895 1.45 0.00 0.00 2.57
353 365 2.851263 TGATAACCAAAGTCAGGCGT 57.149 45.000 0.00 0.00 0.00 5.68
362 374 3.006940 GACGTGAGCCATGATAACCAAA 58.993 45.455 0.00 0.00 0.00 3.28
456 468 3.691342 CGACGCCAAGACCTCCCA 61.691 66.667 0.00 0.00 0.00 4.37
504 517 1.802960 CTGCAGCGACAATTCAAGACT 59.197 47.619 0.00 0.00 0.00 3.24
512 525 2.224606 CCCATTATCTGCAGCGACAAT 58.775 47.619 9.47 0.00 0.00 2.71
617 632 5.674525 ACATTCGAGCTCCTAAATTCATGA 58.325 37.500 8.47 0.00 0.00 3.07
619 634 4.747108 CGACATTCGAGCTCCTAAATTCAT 59.253 41.667 8.47 0.00 43.74 2.57
634 649 1.651138 GCTTGTGAGTCTCGACATTCG 59.349 52.381 0.00 0.00 42.10 3.34
635 650 2.920490 GAGCTTGTGAGTCTCGACATTC 59.080 50.000 0.00 2.98 0.00 2.67
636 651 2.297315 TGAGCTTGTGAGTCTCGACATT 59.703 45.455 0.00 0.00 32.29 2.71
637 652 1.889170 TGAGCTTGTGAGTCTCGACAT 59.111 47.619 0.00 0.00 32.29 3.06
638 653 1.001268 GTGAGCTTGTGAGTCTCGACA 60.001 52.381 0.00 0.00 32.29 4.35
639 654 1.692296 GTGAGCTTGTGAGTCTCGAC 58.308 55.000 0.00 0.00 32.29 4.20
640 655 0.238553 CGTGAGCTTGTGAGTCTCGA 59.761 55.000 0.00 0.00 32.29 4.04
641 656 0.238553 TCGTGAGCTTGTGAGTCTCG 59.761 55.000 0.00 0.00 32.29 4.04
642 657 2.323959 CTTCGTGAGCTTGTGAGTCTC 58.676 52.381 0.00 0.00 0.00 3.36
643 658 2.430546 CTTCGTGAGCTTGTGAGTCT 57.569 50.000 0.00 0.00 0.00 3.24
654 669 2.289002 GGGATAAAGCATGCTTCGTGAG 59.711 50.000 32.01 0.00 34.84 3.51
655 670 2.092968 AGGGATAAAGCATGCTTCGTGA 60.093 45.455 32.01 18.06 34.84 4.35
656 671 2.292267 AGGGATAAAGCATGCTTCGTG 58.708 47.619 32.01 0.00 34.84 4.35
657 672 2.717639 AGGGATAAAGCATGCTTCGT 57.282 45.000 32.01 22.83 34.84 3.85
658 673 2.808543 GGTAGGGATAAAGCATGCTTCG 59.191 50.000 32.01 0.00 34.84 3.79
659 674 2.808543 CGGTAGGGATAAAGCATGCTTC 59.191 50.000 32.01 20.18 34.84 3.86
660 675 2.487265 CCGGTAGGGATAAAGCATGCTT 60.487 50.000 27.21 27.21 38.47 3.91
661 676 1.072331 CCGGTAGGGATAAAGCATGCT 59.928 52.381 16.30 16.30 38.47 3.79
662 677 1.523758 CCGGTAGGGATAAAGCATGC 58.476 55.000 10.51 10.51 38.47 4.06
663 678 1.072331 AGCCGGTAGGGATAAAGCATG 59.928 52.381 1.90 0.00 38.47 4.06
664 679 1.435256 AGCCGGTAGGGATAAAGCAT 58.565 50.000 1.90 0.00 38.47 3.79
665 680 1.968493 CTAGCCGGTAGGGATAAAGCA 59.032 52.381 1.90 0.00 35.93 3.91
666 681 1.337917 GCTAGCCGGTAGGGATAAAGC 60.338 57.143 2.29 0.00 35.93 3.51
667 682 1.968493 TGCTAGCCGGTAGGGATAAAG 59.032 52.381 13.29 0.00 35.93 1.85
668 683 1.968493 CTGCTAGCCGGTAGGGATAAA 59.032 52.381 13.29 0.00 35.93 1.40
669 684 1.629043 CTGCTAGCCGGTAGGGATAA 58.371 55.000 13.29 0.00 35.93 1.75
670 685 0.251653 CCTGCTAGCCGGTAGGGATA 60.252 60.000 16.55 0.00 38.47 2.59
671 686 1.534235 CCTGCTAGCCGGTAGGGAT 60.534 63.158 16.55 0.00 38.47 3.85
672 687 2.123425 CCTGCTAGCCGGTAGGGA 60.123 66.667 16.55 0.00 38.47 4.20
673 688 3.930012 GCCTGCTAGCCGGTAGGG 61.930 72.222 24.14 11.92 39.08 3.53
674 689 2.511452 ATGCCTGCTAGCCGGTAGG 61.511 63.158 24.14 18.68 41.13 3.18
675 690 1.301244 CATGCCTGCTAGCCGGTAG 60.301 63.158 24.14 9.69 0.00 3.18
676 691 2.063979 ACATGCCTGCTAGCCGGTA 61.064 57.895 24.14 21.06 0.00 4.02
677 692 3.402681 ACATGCCTGCTAGCCGGT 61.403 61.111 24.14 4.82 0.00 5.28
678 693 2.898840 CACATGCCTGCTAGCCGG 60.899 66.667 20.08 20.08 0.00 6.13
679 694 2.124983 ACACATGCCTGCTAGCCG 60.125 61.111 13.29 5.57 0.00 5.52
680 695 2.117156 CCACACATGCCTGCTAGCC 61.117 63.158 13.29 0.00 0.00 3.93
681 696 0.962356 AACCACACATGCCTGCTAGC 60.962 55.000 8.10 8.10 0.00 3.42
682 697 0.806868 CAACCACACATGCCTGCTAG 59.193 55.000 0.00 0.00 0.00 3.42
683 698 0.608856 CCAACCACACATGCCTGCTA 60.609 55.000 0.00 0.00 0.00 3.49
684 699 1.904865 CCAACCACACATGCCTGCT 60.905 57.895 0.00 0.00 0.00 4.24
685 700 2.652530 CCAACCACACATGCCTGC 59.347 61.111 0.00 0.00 0.00 4.85
686 701 1.526575 GACCCAACCACACATGCCTG 61.527 60.000 0.00 0.00 0.00 4.85
687 702 1.228552 GACCCAACCACACATGCCT 60.229 57.895 0.00 0.00 0.00 4.75
688 703 1.526575 CTGACCCAACCACACATGCC 61.527 60.000 0.00 0.00 0.00 4.40
689 704 0.823356 ACTGACCCAACCACACATGC 60.823 55.000 0.00 0.00 0.00 4.06
690 705 1.238439 GACTGACCCAACCACACATG 58.762 55.000 0.00 0.00 0.00 3.21
691 706 0.250295 CGACTGACCCAACCACACAT 60.250 55.000 0.00 0.00 0.00 3.21
692 707 1.145156 CGACTGACCCAACCACACA 59.855 57.895 0.00 0.00 0.00 3.72
693 708 1.597027 CCGACTGACCCAACCACAC 60.597 63.158 0.00 0.00 0.00 3.82
694 709 1.338890 TTCCGACTGACCCAACCACA 61.339 55.000 0.00 0.00 0.00 4.17
695 710 0.036306 ATTCCGACTGACCCAACCAC 59.964 55.000 0.00 0.00 0.00 4.16
696 711 0.036164 CATTCCGACTGACCCAACCA 59.964 55.000 0.00 0.00 0.00 3.67
697 712 0.323629 TCATTCCGACTGACCCAACC 59.676 55.000 0.00 0.00 0.00 3.77
698 713 1.439679 GTCATTCCGACTGACCCAAC 58.560 55.000 7.49 0.00 41.81 3.77
699 714 3.927555 GTCATTCCGACTGACCCAA 57.072 52.632 7.49 0.00 41.81 4.12
711 726 2.412089 CACGGACGAAAGGAAGTCATTC 59.588 50.000 0.00 0.00 39.01 2.67
712 727 2.224209 ACACGGACGAAAGGAAGTCATT 60.224 45.455 0.00 0.00 39.01 2.57
713 728 1.343465 ACACGGACGAAAGGAAGTCAT 59.657 47.619 0.00 0.00 39.01 3.06
714 729 0.748450 ACACGGACGAAAGGAAGTCA 59.252 50.000 0.00 0.00 39.01 3.41
715 730 2.712057 TACACGGACGAAAGGAAGTC 57.288 50.000 0.00 0.00 36.70 3.01
716 731 3.126073 GTTTACACGGACGAAAGGAAGT 58.874 45.455 0.00 0.00 0.00 3.01
717 732 3.125316 TGTTTACACGGACGAAAGGAAG 58.875 45.455 0.00 0.00 0.00 3.46
718 733 3.176552 TGTTTACACGGACGAAAGGAA 57.823 42.857 0.00 0.00 0.00 3.36
719 734 2.886862 TGTTTACACGGACGAAAGGA 57.113 45.000 0.00 0.00 0.00 3.36
720 735 3.249080 ACAATGTTTACACGGACGAAAGG 59.751 43.478 0.00 0.00 0.00 3.11
721 736 4.025563 TCACAATGTTTACACGGACGAAAG 60.026 41.667 0.00 0.00 0.00 2.62
722 737 3.869832 TCACAATGTTTACACGGACGAAA 59.130 39.130 0.00 0.00 0.00 3.46
723 738 3.245754 GTCACAATGTTTACACGGACGAA 59.754 43.478 0.00 0.00 0.00 3.85
724 739 2.796031 GTCACAATGTTTACACGGACGA 59.204 45.455 0.00 0.00 0.00 4.20
725 740 2.409244 CGTCACAATGTTTACACGGACG 60.409 50.000 5.93 5.93 40.45 4.79
726 741 3.163642 CGTCACAATGTTTACACGGAC 57.836 47.619 0.00 0.00 0.00 4.79
728 743 2.587612 CCGTCACAATGTTTACACGG 57.412 50.000 8.09 8.09 40.73 4.94
729 744 1.529438 AGCCGTCACAATGTTTACACG 59.471 47.619 0.00 0.00 0.00 4.49
730 745 2.546368 TCAGCCGTCACAATGTTTACAC 59.454 45.455 0.00 0.00 0.00 2.90
731 746 2.839975 TCAGCCGTCACAATGTTTACA 58.160 42.857 0.00 0.00 0.00 2.41
732 747 3.889196 TTCAGCCGTCACAATGTTTAC 57.111 42.857 0.00 0.00 0.00 2.01
733 748 6.561737 TTTATTCAGCCGTCACAATGTTTA 57.438 33.333 0.00 0.00 0.00 2.01
734 749 5.446143 TTTATTCAGCCGTCACAATGTTT 57.554 34.783 0.00 0.00 0.00 2.83
735 750 5.446143 TTTTATTCAGCCGTCACAATGTT 57.554 34.783 0.00 0.00 0.00 2.71
736 751 5.446143 TTTTTATTCAGCCGTCACAATGT 57.554 34.783 0.00 0.00 0.00 2.71
737 752 4.324402 GCTTTTTATTCAGCCGTCACAATG 59.676 41.667 0.00 0.00 0.00 2.82
738 753 4.218417 AGCTTTTTATTCAGCCGTCACAAT 59.782 37.500 0.00 0.00 36.62 2.71
739 754 3.568007 AGCTTTTTATTCAGCCGTCACAA 59.432 39.130 0.00 0.00 36.62 3.33
740 755 3.146066 AGCTTTTTATTCAGCCGTCACA 58.854 40.909 0.00 0.00 36.62 3.58
741 756 3.831715 AGCTTTTTATTCAGCCGTCAC 57.168 42.857 0.00 0.00 36.62 3.67
742 757 4.545610 CAAAGCTTTTTATTCAGCCGTCA 58.454 39.130 9.53 0.00 36.62 4.35
743 758 3.920412 CCAAAGCTTTTTATTCAGCCGTC 59.080 43.478 9.53 0.00 36.62 4.79
744 759 3.572255 TCCAAAGCTTTTTATTCAGCCGT 59.428 39.130 9.53 0.00 36.62 5.68
745 760 4.168760 CTCCAAAGCTTTTTATTCAGCCG 58.831 43.478 9.53 0.00 36.62 5.52
746 761 5.139435 ACTCCAAAGCTTTTTATTCAGCC 57.861 39.130 9.53 0.00 36.62 4.85
747 762 6.479990 ACAAACTCCAAAGCTTTTTATTCAGC 59.520 34.615 9.53 0.00 36.16 4.26
748 763 7.922811 AGACAAACTCCAAAGCTTTTTATTCAG 59.077 33.333 9.53 2.02 0.00 3.02
749 764 7.781056 AGACAAACTCCAAAGCTTTTTATTCA 58.219 30.769 9.53 0.00 0.00 2.57
750 765 9.744468 TTAGACAAACTCCAAAGCTTTTTATTC 57.256 29.630 9.53 2.12 0.00 1.75
753 768 9.930693 TTTTTAGACAAACTCCAAAGCTTTTTA 57.069 25.926 9.53 0.00 0.00 1.52
754 769 8.840833 TTTTTAGACAAACTCCAAAGCTTTTT 57.159 26.923 9.53 0.00 0.00 1.94
777 792 4.142249 CCCCTCGTGTGACTTTTTCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
778 793 3.380320 CCCCTCGTGTGACTTTTTCTTTT 59.620 43.478 0.00 0.00 0.00 2.27
779 794 2.949644 CCCCTCGTGTGACTTTTTCTTT 59.050 45.455 0.00 0.00 0.00 2.52
780 795 2.572290 CCCCTCGTGTGACTTTTTCTT 58.428 47.619 0.00 0.00 0.00 2.52
781 796 1.814248 GCCCCTCGTGTGACTTTTTCT 60.814 52.381 0.00 0.00 0.00 2.52
782 797 0.591659 GCCCCTCGTGTGACTTTTTC 59.408 55.000 0.00 0.00 0.00 2.29
873 889 8.920174 GTGGCTGGTTTTTATTTAGGGTAATAT 58.080 33.333 0.00 0.00 0.00 1.28
886 904 1.600023 CCTCGTGTGGCTGGTTTTTA 58.400 50.000 0.00 0.00 0.00 1.52
935 953 0.029300 CACCTCGTGTGGCTGTTTTG 59.971 55.000 0.72 0.00 41.52 2.44
1036 1061 3.866582 GCGAGTGGGGAGGGGATG 61.867 72.222 0.00 0.00 0.00 3.51
1040 1065 2.706952 TTTTTGGCGAGTGGGGAGGG 62.707 60.000 0.00 0.00 0.00 4.30
1041 1066 0.611896 ATTTTTGGCGAGTGGGGAGG 60.612 55.000 0.00 0.00 0.00 4.30
1042 1067 0.811281 GATTTTTGGCGAGTGGGGAG 59.189 55.000 0.00 0.00 0.00 4.30
1043 1068 0.610785 GGATTTTTGGCGAGTGGGGA 60.611 55.000 0.00 0.00 0.00 4.81
1312 1338 1.617018 CCTCTCATCGGGAGCCACAA 61.617 60.000 0.75 0.00 43.70 3.33
1407 1433 5.080337 TGGCAATTAATGTAACCTCAACCA 58.920 37.500 0.00 0.00 0.00 3.67
1409 1435 9.816354 ATTAATGGCAATTAATGTAACCTCAAC 57.184 29.630 16.76 0.00 43.98 3.18
1513 1539 0.617820 GACTCCCTGGAGGCTGGTAA 60.618 60.000 17.21 0.00 46.35 2.85
1543 1569 9.693739 TGATAATTAATTTAAGAGGCCAGTTCA 57.306 29.630 5.01 0.00 0.00 3.18
1547 1573 7.041098 ACGCTGATAATTAATTTAAGAGGCCAG 60.041 37.037 5.01 4.38 0.00 4.85
1591 1617 7.841915 TCATTCGAATATTGCAGACAAACTA 57.158 32.000 10.97 0.00 39.77 2.24
1625 1651 1.138069 CCCTGGTACATCGTGTATGCA 59.862 52.381 0.00 0.00 39.39 3.96
1634 1660 2.943033 GCACACATTACCCTGGTACATC 59.057 50.000 0.00 0.00 38.20 3.06
1640 1666 0.107214 ATCCGCACACATTACCCTGG 60.107 55.000 0.00 0.00 0.00 4.45
1645 1671 5.034152 CCAAAATGTATCCGCACACATTAC 58.966 41.667 7.03 0.00 42.93 1.89
1651 1677 3.305676 CCAAACCAAAATGTATCCGCACA 60.306 43.478 0.00 0.00 0.00 4.57
1661 1687 2.425539 GCATCCCACCAAACCAAAATG 58.574 47.619 0.00 0.00 0.00 2.32
1672 1698 0.468226 TATCCACTTCGCATCCCACC 59.532 55.000 0.00 0.00 0.00 4.61
1684 1710 8.023021 TCACATAAGCAAGTAAGATATCCACT 57.977 34.615 0.00 0.29 0.00 4.00
1707 1733 6.183360 GGCCCATTGGAATGTAAATACAATCA 60.183 38.462 3.62 1.84 37.74 2.57
1730 1761 6.826741 TGAAATCTATAAACCCTACACTTGGC 59.173 38.462 0.00 0.00 0.00 4.52
1758 1789 0.969894 CTATACTCAGGCCCTTCCGG 59.030 60.000 0.00 0.00 40.77 5.14
1761 1792 2.043227 ACAGCTATACTCAGGCCCTTC 58.957 52.381 0.00 0.00 0.00 3.46
1791 1830 5.299279 TCCTTTGTTCAAGATTTCTCACACC 59.701 40.000 0.00 0.00 33.80 4.16
1814 1853 2.196776 CCATGGGGAGGCCATGTC 59.803 66.667 5.01 0.00 42.24 3.06
1917 1956 9.534565 CAAACAGAAGTTGCTATAAGCTCTATA 57.465 33.333 0.03 0.00 42.97 1.31
1967 2006 2.538512 TGCTCCATACAGCAGCTATG 57.461 50.000 0.00 0.00 44.73 2.23
1993 2032 8.418662 AGCAGTCATGAAATGCACAATATTATT 58.581 29.630 27.07 7.74 46.21 1.40
2080 2119 4.999310 TCTTTGGACTGGAGACTTCTAGA 58.001 43.478 0.00 0.00 35.62 2.43
2110 2149 5.646606 ACAAACAAAGAACTAACGCACAAT 58.353 33.333 0.00 0.00 0.00 2.71
2112 2151 4.688511 ACAAACAAAGAACTAACGCACA 57.311 36.364 0.00 0.00 0.00 4.57
2117 2156 7.009815 GGCCAAAGTAACAAACAAAGAACTAAC 59.990 37.037 0.00 0.00 0.00 2.34
2120 2159 5.186992 AGGCCAAAGTAACAAACAAAGAACT 59.813 36.000 5.01 0.00 0.00 3.01
2202 2241 3.657398 ACATCATCCACATCACCACAT 57.343 42.857 0.00 0.00 0.00 3.21
2203 2242 3.438216 AACATCATCCACATCACCACA 57.562 42.857 0.00 0.00 0.00 4.17
2204 2243 4.012374 AGAAACATCATCCACATCACCAC 58.988 43.478 0.00 0.00 0.00 4.16
2205 2244 4.305539 AGAAACATCATCCACATCACCA 57.694 40.909 0.00 0.00 0.00 4.17
2206 2245 5.649782 AAAGAAACATCATCCACATCACC 57.350 39.130 0.00 0.00 0.00 4.02
2207 2246 5.346822 GCAAAAGAAACATCATCCACATCAC 59.653 40.000 0.00 0.00 0.00 3.06
2208 2247 5.010820 TGCAAAAGAAACATCATCCACATCA 59.989 36.000 0.00 0.00 0.00 3.07
2209 2248 5.346822 GTGCAAAAGAAACATCATCCACATC 59.653 40.000 0.00 0.00 0.00 3.06
2214 2253 4.240096 CAGGTGCAAAAGAAACATCATCC 58.760 43.478 0.00 0.00 0.00 3.51
2233 2272 6.867662 AAGACTTCAACATAGAACAACAGG 57.132 37.500 0.00 0.00 0.00 4.00
2243 2282 7.514721 AGAGGGTAAACAAAGACTTCAACATA 58.485 34.615 0.00 0.00 0.00 2.29
2252 2291 4.261614 CCTGCAAAGAGGGTAAACAAAGAC 60.262 45.833 0.00 0.00 0.00 3.01
2257 2296 2.582052 CACCTGCAAAGAGGGTAAACA 58.418 47.619 0.00 0.00 37.45 2.83
2258 2297 1.886542 CCACCTGCAAAGAGGGTAAAC 59.113 52.381 0.00 0.00 37.45 2.01
2451 2490 2.481289 ACTTGGAAGCAGGTAGAAGC 57.519 50.000 0.00 0.00 0.00 3.86
2547 2588 6.795144 AATGATCTTTGTGAATTGCCCATA 57.205 33.333 0.00 0.00 0.00 2.74
2549 2590 5.479724 TGTAATGATCTTTGTGAATTGCCCA 59.520 36.000 4.17 0.00 0.00 5.36
2569 2610 9.098355 GCAACTTATGATATCACTTGAGTGTAA 57.902 33.333 7.78 0.00 45.76 2.41
2788 2986 3.380471 TGCTAGCATAACAAACCCCAT 57.620 42.857 14.93 0.00 0.00 4.00
2829 3027 8.175716 GGAGTTCCTTAAAATTATGACTTGTCG 58.824 37.037 0.00 0.00 0.00 4.35
2854 3052 1.067516 CAAGTGCAAAAGTGGGTGAGG 59.932 52.381 0.00 0.00 0.00 3.86
2912 3110 3.509967 TCACAGATCGAAAAGTAGGCTCA 59.490 43.478 0.00 0.00 0.00 4.26
2976 3175 6.462909 CCAGCATGAATATCAGTGTAGTGGTA 60.463 42.308 0.00 0.00 39.69 3.25
3424 3697 5.749462 AGAATAGAGTGCTAGCCAAAACAT 58.251 37.500 13.29 0.00 0.00 2.71
3776 4050 3.813724 GGAGTTGTTCAGAAGGGTGTAAC 59.186 47.826 0.00 0.00 0.00 2.50
3832 4106 0.395586 TGTCAAACAGCTTGCCCACT 60.396 50.000 0.00 0.00 34.76 4.00
3833 4107 0.249031 GTGTCAAACAGCTTGCCCAC 60.249 55.000 0.00 0.00 34.76 4.61
3834 4108 0.682532 TGTGTCAAACAGCTTGCCCA 60.683 50.000 0.00 0.00 34.76 5.36
3837 4111 2.098117 AGAAGTGTGTCAAACAGCTTGC 59.902 45.455 0.00 0.00 40.26 4.01
3859 4133 4.037923 CAGCTCACCTGCTAAAAGGAAAAA 59.962 41.667 0.00 0.00 41.98 1.94
4079 4354 5.539955 AGTTCACCAGGTGCAAATTTAGATT 59.460 36.000 15.64 0.00 32.98 2.40
4251 4685 2.109425 AAACCTAAGGGATGCACGTC 57.891 50.000 0.00 0.00 36.25 4.34
4254 4688 3.692690 TGGTTAAACCTAAGGGATGCAC 58.307 45.455 0.00 0.00 39.58 4.57
4265 4699 2.876550 GTTCAGTTCGCTGGTTAAACCT 59.123 45.455 0.00 0.00 45.04 3.50
4276 4710 4.030977 GCATTCATGATTTGTTCAGTTCGC 59.969 41.667 0.00 0.00 37.89 4.70
4299 4733 5.010012 AGCTTCGCCCATGAAATAATTAAGG 59.990 40.000 0.00 0.00 0.00 2.69
4305 4739 3.351740 TCAAGCTTCGCCCATGAAATAA 58.648 40.909 0.00 0.00 0.00 1.40
4341 4775 5.853936 TCCAGAATCGTATGATTAACCAGG 58.146 41.667 10.18 5.30 44.79 4.45
4342 4776 7.969536 ATTCCAGAATCGTATGATTAACCAG 57.030 36.000 10.18 0.00 44.79 4.00
4343 4777 8.620416 CAAATTCCAGAATCGTATGATTAACCA 58.380 33.333 10.18 0.00 44.79 3.67
4344 4778 8.076178 CCAAATTCCAGAATCGTATGATTAACC 58.924 37.037 10.18 0.00 44.79 2.85
4349 4783 6.484643 CAGTCCAAATTCCAGAATCGTATGAT 59.515 38.462 0.00 0.00 35.98 2.45
4355 4789 4.507710 TCTCAGTCCAAATTCCAGAATCG 58.492 43.478 0.00 0.00 0.00 3.34
4382 4816 3.099141 AGCCCAATGATTTGAACCGAAT 58.901 40.909 0.00 0.00 34.60 3.34
4436 4870 5.626142 TCACTATTAAACTTCTGGCAACCA 58.374 37.500 0.00 0.00 0.00 3.67
4460 4917 3.127895 ACGAAAGTTGTACAAAAGCAGCA 59.872 39.130 10.51 0.00 46.40 4.41
4484 4941 0.256752 TCGTTACTCCCTCCGATCCA 59.743 55.000 0.00 0.00 0.00 3.41
4485 4942 1.066757 GTTCGTTACTCCCTCCGATCC 59.933 57.143 0.00 0.00 0.00 3.36
4502 4959 6.206829 ACCACAAGAATAAGCCTACAAAGTTC 59.793 38.462 0.00 0.00 0.00 3.01
4525 4982 1.669999 TTACTCCCTCGCGCCTTACC 61.670 60.000 0.00 0.00 0.00 2.85
4526 4983 0.527169 GTTACTCCCTCGCGCCTTAC 60.527 60.000 0.00 0.00 0.00 2.34
4527 4984 1.811860 GTTACTCCCTCGCGCCTTA 59.188 57.895 0.00 0.00 0.00 2.69
4528 4985 2.577593 GTTACTCCCTCGCGCCTT 59.422 61.111 0.00 0.00 0.00 4.35
4529 4986 3.823330 CGTTACTCCCTCGCGCCT 61.823 66.667 0.00 0.00 0.00 5.52
4530 4987 3.346631 TTCGTTACTCCCTCGCGCC 62.347 63.158 0.00 0.00 0.00 6.53
4531 4988 2.157073 GTTCGTTACTCCCTCGCGC 61.157 63.158 0.00 0.00 0.00 6.86
4532 4989 0.109412 AAGTTCGTTACTCCCTCGCG 60.109 55.000 0.00 0.00 35.54 5.87
4533 4990 1.725164 CAAAGTTCGTTACTCCCTCGC 59.275 52.381 0.00 0.00 35.54 5.03
4534 4991 3.022607 ACAAAGTTCGTTACTCCCTCG 57.977 47.619 0.00 0.00 35.54 4.63
4535 4992 4.492611 CCTACAAAGTTCGTTACTCCCTC 58.507 47.826 0.00 0.00 35.54 4.30
4536 4993 3.306571 GCCTACAAAGTTCGTTACTCCCT 60.307 47.826 0.00 0.00 35.54 4.20
4537 4994 2.998670 GCCTACAAAGTTCGTTACTCCC 59.001 50.000 0.00 0.00 35.54 4.30
4538 4995 3.922910 AGCCTACAAAGTTCGTTACTCC 58.077 45.455 0.00 0.00 35.54 3.85
4539 4996 7.544915 AGAATAAGCCTACAAAGTTCGTTACTC 59.455 37.037 0.00 0.00 35.54 2.59
4540 4997 7.384477 AGAATAAGCCTACAAAGTTCGTTACT 58.616 34.615 0.00 0.00 39.32 2.24
4541 4998 7.592439 AGAATAAGCCTACAAAGTTCGTTAC 57.408 36.000 0.00 0.00 0.00 2.50
4542 4999 7.658575 ACAAGAATAAGCCTACAAAGTTCGTTA 59.341 33.333 0.00 0.00 0.00 3.18
4543 5000 6.485648 ACAAGAATAAGCCTACAAAGTTCGTT 59.514 34.615 0.00 0.00 0.00 3.85
4544 5001 5.995897 ACAAGAATAAGCCTACAAAGTTCGT 59.004 36.000 0.00 0.00 0.00 3.85
4545 5002 6.307155 CACAAGAATAAGCCTACAAAGTTCG 58.693 40.000 0.00 0.00 0.00 3.95
4546 5003 6.206829 ACCACAAGAATAAGCCTACAAAGTTC 59.793 38.462 0.00 0.00 0.00 3.01
4547 5004 6.068670 ACCACAAGAATAAGCCTACAAAGTT 58.931 36.000 0.00 0.00 0.00 2.66
4548 5005 5.631119 ACCACAAGAATAAGCCTACAAAGT 58.369 37.500 0.00 0.00 0.00 2.66
4549 5006 7.148239 CCTTACCACAAGAATAAGCCTACAAAG 60.148 40.741 0.00 0.00 0.00 2.77
4550 5007 6.657541 CCTTACCACAAGAATAAGCCTACAAA 59.342 38.462 0.00 0.00 0.00 2.83
4551 5008 6.177610 CCTTACCACAAGAATAAGCCTACAA 58.822 40.000 0.00 0.00 0.00 2.41
4552 5009 5.741011 CCTTACCACAAGAATAAGCCTACA 58.259 41.667 0.00 0.00 0.00 2.74
4553 5010 4.575236 GCCTTACCACAAGAATAAGCCTAC 59.425 45.833 0.00 0.00 0.00 3.18
4554 5011 4.682320 CGCCTTACCACAAGAATAAGCCTA 60.682 45.833 0.00 0.00 0.00 3.93
4555 5012 3.621558 GCCTTACCACAAGAATAAGCCT 58.378 45.455 0.00 0.00 0.00 4.58
4556 5013 2.354821 CGCCTTACCACAAGAATAAGCC 59.645 50.000 0.00 0.00 0.00 4.35
4557 5014 2.223272 GCGCCTTACCACAAGAATAAGC 60.223 50.000 0.00 0.00 0.00 3.09
4558 5015 3.006940 TGCGCCTTACCACAAGAATAAG 58.993 45.455 4.18 0.00 0.00 1.73
4559 5016 3.060736 TGCGCCTTACCACAAGAATAA 57.939 42.857 4.18 0.00 0.00 1.40
4560 5017 2.772077 TGCGCCTTACCACAAGAATA 57.228 45.000 4.18 0.00 0.00 1.75
4561 5018 2.128771 ATGCGCCTTACCACAAGAAT 57.871 45.000 4.18 0.00 0.00 2.40
4562 5019 2.027561 AGTATGCGCCTTACCACAAGAA 60.028 45.455 4.18 0.00 0.00 2.52
4563 5020 1.553248 AGTATGCGCCTTACCACAAGA 59.447 47.619 4.18 0.00 0.00 3.02
4564 5021 1.933853 GAGTATGCGCCTTACCACAAG 59.066 52.381 4.18 0.00 0.00 3.16
4565 5022 1.737696 CGAGTATGCGCCTTACCACAA 60.738 52.381 4.18 0.00 0.00 3.33
4566 5023 0.179121 CGAGTATGCGCCTTACCACA 60.179 55.000 4.18 0.00 0.00 4.17
4567 5024 2.589890 CGAGTATGCGCCTTACCAC 58.410 57.895 4.18 3.96 0.00 4.16
4591 5048 3.490896 GCTTGTTTGGTTTGAAGCTAAGC 59.509 43.478 0.00 0.00 38.23 3.09
4649 5528 5.221130 GGTGCTACATTTATCGAGTACTCC 58.779 45.833 17.23 0.00 0.00 3.85
4650 5529 5.828747 TGGTGCTACATTTATCGAGTACTC 58.171 41.667 13.18 13.18 0.00 2.59
4651 5530 5.360144 ACTGGTGCTACATTTATCGAGTACT 59.640 40.000 0.00 0.00 0.00 2.73
4652 5531 5.459107 CACTGGTGCTACATTTATCGAGTAC 59.541 44.000 0.00 0.00 0.00 2.73
4653 5532 5.358725 TCACTGGTGCTACATTTATCGAGTA 59.641 40.000 0.00 0.00 0.00 2.59
4654 5533 4.159693 TCACTGGTGCTACATTTATCGAGT 59.840 41.667 0.00 0.00 0.00 4.18
4680 5559 8.037758 ACCATCTCTTCCTATAATATTTCGCAG 58.962 37.037 0.00 0.00 0.00 5.18
4749 5628 1.379044 CTGGGCCTTGGTCATGGAC 60.379 63.158 4.53 3.86 33.13 4.02
4776 5655 7.042051 TGCTACTACAGAACTTTGTTTTAGCTG 60.042 37.037 0.00 0.00 39.06 4.24
4815 5697 6.412362 AACCTTTGTTATGTGGCATGTTAA 57.588 33.333 0.00 0.00 31.36 2.01
4836 5718 6.429521 TGGGGCCTAGAATTGTAGTATAAC 57.570 41.667 0.84 0.00 0.00 1.89
4838 5720 6.571624 AGATGGGGCCTAGAATTGTAGTATA 58.428 40.000 0.84 0.00 0.00 1.47
4840 5722 4.827789 AGATGGGGCCTAGAATTGTAGTA 58.172 43.478 0.84 0.00 0.00 1.82
4842 5724 3.648067 TGAGATGGGGCCTAGAATTGTAG 59.352 47.826 0.84 2.62 0.00 2.74
4843 5725 3.391296 GTGAGATGGGGCCTAGAATTGTA 59.609 47.826 0.84 0.00 0.00 2.41
4849 5781 1.062198 TGATGTGAGATGGGGCCTAGA 60.062 52.381 0.84 0.00 0.00 2.43
4873 5805 3.942351 TGGAACATGAGTCCTGCAG 57.058 52.632 6.78 6.78 0.00 4.41
4876 5808 5.061853 CATTCCTATGGAACATGAGTCCTG 58.938 45.833 17.38 9.85 45.07 3.86
4881 5813 6.010294 GAATGCATTCCTATGGAACATGAG 57.990 41.667 26.03 0.00 45.07 2.90
4911 7402 5.048991 GTGGTAGTTTGGACAAATGGTACTG 60.049 44.000 0.34 0.00 32.36 2.74
4912 7403 5.067954 GTGGTAGTTTGGACAAATGGTACT 58.932 41.667 0.34 0.00 32.36 2.73
4913 7404 4.216902 GGTGGTAGTTTGGACAAATGGTAC 59.783 45.833 0.34 4.21 32.36 3.34
4914 7405 4.400120 GGTGGTAGTTTGGACAAATGGTA 58.600 43.478 0.34 0.00 32.36 3.25
4915 7406 3.227614 GGTGGTAGTTTGGACAAATGGT 58.772 45.455 0.34 0.00 32.36 3.55
4942 7433 7.780271 AGTGGAAGTTCAGGTTTATTTCTTTCT 59.220 33.333 5.01 0.00 0.00 2.52
4999 7490 3.574396 TGAGTACTTGTCCTGGTTGAGAG 59.426 47.826 0.00 0.00 0.00 3.20
5071 7562 1.749033 GGAAGTAGGGGCATCTCGG 59.251 63.158 0.00 0.00 0.00 4.63
5130 7621 1.336148 ACATCACATTGTTTGCAGCGG 60.336 47.619 0.00 0.00 0.00 5.52
5132 7623 3.015934 TCACATCACATTGTTTGCAGC 57.984 42.857 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.