Multiple sequence alignment - TraesCS1A01G281700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G281700 chr1A 100.000 5080 0 0 1 5080 480433463 480428384 0.000000e+00 9382.0
1 TraesCS1A01G281700 chr1B 93.181 1877 74 26 892 2743 508398853 508397006 0.000000e+00 2708.0
2 TraesCS1A01G281700 chr1B 91.476 1572 84 28 2823 4386 508397009 508395480 0.000000e+00 2115.0
3 TraesCS1A01G281700 chr1B 87.661 697 41 24 4401 5080 508395382 508394714 0.000000e+00 769.0
4 TraesCS1A01G281700 chr1B 87.143 210 23 4 11 217 508402936 508402728 8.500000e-58 235.0
5 TraesCS1A01G281700 chr1B 92.793 111 7 1 774 883 508399082 508398972 5.260000e-35 159.0
6 TraesCS1A01G281700 chr1D 94.377 1654 56 11 780 2417 379437179 379435547 0.000000e+00 2505.0
7 TraesCS1A01G281700 chr1D 89.163 1578 95 37 3535 5080 379434366 379432833 0.000000e+00 1897.0
8 TraesCS1A01G281700 chr1D 89.474 361 32 4 3096 3456 379434724 379434370 7.760000e-123 451.0
9 TraesCS1A01G281700 chr1D 89.610 308 30 2 343 649 379439320 379439014 1.710000e-104 390.0
10 TraesCS1A01G281700 chr1D 92.664 259 16 1 2415 2673 379435304 379435049 2.230000e-98 370.0
11 TraesCS1A01G281700 chr1D 89.340 197 14 4 2823 3019 379434937 379434748 1.830000e-59 241.0
12 TraesCS1A01G281700 chr1D 91.429 140 9 3 641 777 483150734 483150595 6.710000e-44 189.0
13 TraesCS1A01G281700 chr1D 90.909 77 6 1 2668 2743 379435010 379434934 9.000000e-18 102.0
14 TraesCS1A01G281700 chr1D 92.000 50 3 1 3045 3094 367412907 367412859 9.130000e-08 69.4
15 TraesCS1A01G281700 chr7A 78.080 1250 168 70 3457 4649 648141462 648140262 0.000000e+00 693.0
16 TraesCS1A01G281700 chr7A 94.059 101 5 1 2726 2826 136806093 136806192 8.810000e-33 152.0
17 TraesCS1A01G281700 chr7A 91.589 107 7 2 2737 2842 29845817 29845922 4.100000e-31 147.0
18 TraesCS1A01G281700 chr5B 82.385 738 80 28 3457 4168 325072404 325073117 9.410000e-167 597.0
19 TraesCS1A01G281700 chr5B 91.912 136 10 1 641 776 322552713 322552579 6.710000e-44 189.0
20 TraesCS1A01G281700 chr5B 89.091 55 5 1 3051 3105 461298878 461298825 3.280000e-07 67.6
21 TraesCS1A01G281700 chr7B 76.128 1064 156 61 3639 4649 612309757 612308739 7.700000e-128 468.0
22 TraesCS1A01G281700 chr5D 82.724 492 67 16 3461 3947 286191903 286192381 6.080000e-114 422.0
23 TraesCS1A01G281700 chr5D 80.963 436 56 12 3742 4157 286192382 286192810 2.280000e-83 320.0
24 TraesCS1A01G281700 chr5D 94.059 101 5 1 2737 2836 346622918 346622818 8.810000e-33 152.0
25 TraesCS1A01G281700 chr5D 96.703 91 2 1 2735 2824 294640325 294640235 3.170000e-32 150.0
26 TraesCS1A01G281700 chr5D 93.750 48 2 1 3051 3097 384475778 384475731 2.540000e-08 71.3
27 TraesCS1A01G281700 chr5A 74.921 949 148 44 3742 4640 378513677 378514585 8.090000e-93 351.0
28 TraesCS1A01G281700 chr4A 93.382 136 9 0 641 776 674616929 674616794 8.620000e-48 202.0
29 TraesCS1A01G281700 chr4A 95.604 91 4 0 2740 2830 597739966 597739876 4.100000e-31 147.0
30 TraesCS1A01G281700 chr4A 90.909 77 4 1 3018 3091 455023804 455023728 3.240000e-17 100.0
31 TraesCS1A01G281700 chr7D 92.701 137 9 1 641 776 508498537 508498401 4.010000e-46 196.0
32 TraesCS1A01G281700 chr3A 90.972 144 9 3 641 782 79450705 79450846 1.870000e-44 191.0
33 TraesCS1A01G281700 chr3A 91.971 137 10 1 641 777 603877075 603877210 1.870000e-44 191.0
34 TraesCS1A01G281700 chr3D 90.278 144 10 3 641 782 67724562 67724703 8.690000e-43 185.0
35 TraesCS1A01G281700 chr3B 90.278 144 10 3 641 782 114100359 114100218 8.690000e-43 185.0
36 TraesCS1A01G281700 chr3B 90.714 140 12 1 641 779 805317272 805317133 8.690000e-43 185.0
37 TraesCS1A01G281700 chr3B 84.810 79 10 1 3018 3094 583374113 583374035 1.520000e-10 78.7
38 TraesCS1A01G281700 chr2D 97.753 89 2 0 2740 2828 53145811 53145723 2.450000e-33 154.0
39 TraesCS1A01G281700 chr2D 90.991 111 6 4 2726 2832 108886682 108886572 4.100000e-31 147.0
40 TraesCS1A01G281700 chr2D 90.123 81 5 1 3018 3095 5322655 5322735 9.000000e-18 102.0
41 TraesCS1A01G281700 chr2D 90.741 54 2 2 3046 3099 14766728 14766778 9.130000e-08 69.4
42 TraesCS1A01G281700 chr6D 97.701 87 2 0 2738 2824 168293753 168293839 3.170000e-32 150.0
43 TraesCS1A01G281700 chr6B 94.737 95 5 0 2735 2829 471227668 471227574 1.140000e-31 148.0
44 TraesCS1A01G281700 chr4B 88.608 79 6 2 3018 3093 180943680 180943602 5.420000e-15 93.5
45 TraesCS1A01G281700 chr2B 97.872 47 1 0 3048 3094 38224367 38224413 1.170000e-11 82.4
46 TraesCS1A01G281700 chr2A 96.774 31 1 0 3014 3044 589785576 589785606 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G281700 chr1A 480428384 480433463 5079 True 9382.000000 9382 100.0000 1 5080 1 chr1A.!!$R1 5079
1 TraesCS1A01G281700 chr1B 508394714 508402936 8222 True 1197.200000 2708 90.4508 11 5080 5 chr1B.!!$R1 5069
2 TraesCS1A01G281700 chr1D 379432833 379439320 6487 True 850.857143 2505 90.7910 343 5080 7 chr1D.!!$R3 4737
3 TraesCS1A01G281700 chr7A 648140262 648141462 1200 True 693.000000 693 78.0800 3457 4649 1 chr7A.!!$R1 1192
4 TraesCS1A01G281700 chr5B 325072404 325073117 713 False 597.000000 597 82.3850 3457 4168 1 chr5B.!!$F1 711
5 TraesCS1A01G281700 chr7B 612308739 612309757 1018 True 468.000000 468 76.1280 3639 4649 1 chr7B.!!$R1 1010
6 TraesCS1A01G281700 chr5D 286191903 286192810 907 False 371.000000 422 81.8435 3461 4157 2 chr5D.!!$F1 696
7 TraesCS1A01G281700 chr5A 378513677 378514585 908 False 351.000000 351 74.9210 3742 4640 1 chr5A.!!$F1 898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 474 0.035317 TGCAACGAGCTTCATGGACT 59.965 50.000 6.22 0.0 45.94 3.85 F
1092 4909 1.153549 CCTCGTGCAAGCCTCCTAC 60.154 63.158 0.00 0.0 0.00 3.18 F
2753 6891 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.0 0.00 4.46 F
2783 6921 0.100503 AGCGTTTTTGACACCAGTGC 59.899 50.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 5269 1.067706 TGCAACATGGAAGCCATTTCG 60.068 47.619 0.00 0.0 42.23 3.46 R
2764 6902 0.100503 GCACTGGTGTCAAAAACGCT 59.899 50.000 2.64 0.0 38.49 5.07 R
3842 8019 0.837691 ACACATGGAGCCTGGAGACA 60.838 55.000 0.00 0.0 39.59 3.41 R
4541 9083 2.358737 CACTCACAGGCCCCGTTC 60.359 66.667 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.037136 CCAGTGCGGGCTCTCTTTG 61.037 63.158 0.00 0.00 0.00 2.77
23 24 2.359230 AGTGCGGGCTCTCTTTGC 60.359 61.111 0.00 0.00 0.00 3.68
63 64 6.159988 GGTAAATACTTCTCGCATATGAGCT 58.840 40.000 6.97 0.00 35.90 4.09
73 74 2.280708 CGCATATGAGCTTTTTGCAAGC 59.719 45.455 6.97 0.00 45.94 4.01
97 99 6.922957 GCTAATGTGTCTCCTAGATCTTTGAG 59.077 42.308 0.00 7.68 0.00 3.02
119 121 6.156256 TGAGTACATGGAAGGCTATTTGTAGT 59.844 38.462 0.00 0.00 0.00 2.73
121 123 4.526970 ACATGGAAGGCTATTTGTAGTGG 58.473 43.478 0.00 0.00 0.00 4.00
122 124 4.227300 ACATGGAAGGCTATTTGTAGTGGA 59.773 41.667 0.00 0.00 0.00 4.02
127 129 1.933853 GGCTATTTGTAGTGGAGCGTG 59.066 52.381 0.00 0.00 33.85 5.34
128 130 2.618053 GCTATTTGTAGTGGAGCGTGT 58.382 47.619 0.00 0.00 0.00 4.49
145 147 1.293179 GTTGCTTTGGATGTGGGGC 59.707 57.895 0.00 0.00 0.00 5.80
168 170 4.888917 TCATCAAACGTGTTAGTGATGGA 58.111 39.130 19.56 9.59 44.83 3.41
177 179 6.682746 ACGTGTTAGTGATGGATCATCTATC 58.317 40.000 4.03 4.03 41.06 2.08
182 185 8.363390 TGTTAGTGATGGATCATCTATCTTCAC 58.637 37.037 11.93 4.16 42.17 3.18
185 188 7.975608 AGTGATGGATCATCTATCTTCACATT 58.024 34.615 11.93 0.00 43.12 2.71
190 193 7.951591 TGGATCATCTATCTTCACATTAACGA 58.048 34.615 0.00 0.00 34.75 3.85
202 205 8.836413 TCTTCACATTAACGAATAAATGGATCC 58.164 33.333 4.20 4.20 37.40 3.36
212 215 8.477419 ACGAATAAATGGATCCCAAATATTGT 57.523 30.769 9.90 7.35 36.95 2.71
217 220 3.565307 TGGATCCCAAATATTGTCAGGC 58.435 45.455 9.90 0.00 0.00 4.85
219 222 4.218312 GGATCCCAAATATTGTCAGGCTT 58.782 43.478 0.00 0.00 0.00 4.35
220 223 5.103728 TGGATCCCAAATATTGTCAGGCTTA 60.104 40.000 9.90 0.00 0.00 3.09
222 225 6.071728 GGATCCCAAATATTGTCAGGCTTATG 60.072 42.308 0.00 0.00 0.00 1.90
240 243 4.664062 CCAATGGGCGGATTGAGT 57.336 55.556 8.91 0.00 35.65 3.41
241 244 3.798794 CCAATGGGCGGATTGAGTA 57.201 52.632 8.91 0.00 35.65 2.59
242 245 2.051334 CCAATGGGCGGATTGAGTAA 57.949 50.000 8.91 0.00 35.65 2.24
243 246 1.676006 CCAATGGGCGGATTGAGTAAC 59.324 52.381 8.91 0.00 35.65 2.50
245 248 0.828022 ATGGGCGGATTGAGTAACGA 59.172 50.000 0.00 0.00 0.00 3.85
246 249 0.108520 TGGGCGGATTGAGTAACGAC 60.109 55.000 0.00 0.00 0.00 4.34
250 253 0.526954 CGGATTGAGTAACGACCCGG 60.527 60.000 0.00 0.00 32.64 5.73
251 254 0.533951 GGATTGAGTAACGACCCGGT 59.466 55.000 0.00 0.00 0.00 5.28
252 255 1.636988 GATTGAGTAACGACCCGGTG 58.363 55.000 0.00 0.00 0.00 4.94
253 256 0.248289 ATTGAGTAACGACCCGGTGG 59.752 55.000 0.00 0.00 37.80 4.61
254 257 0.827089 TTGAGTAACGACCCGGTGGA 60.827 55.000 6.57 0.00 34.81 4.02
257 260 0.324091 AGTAACGACCCGGTGGAGAT 60.324 55.000 6.57 0.00 34.81 2.75
258 261 1.064463 AGTAACGACCCGGTGGAGATA 60.064 52.381 6.57 0.00 34.81 1.98
259 262 1.336125 GTAACGACCCGGTGGAGATAG 59.664 57.143 6.57 0.00 34.81 2.08
260 263 0.324091 AACGACCCGGTGGAGATAGT 60.324 55.000 6.57 0.00 34.81 2.12
262 265 0.465824 CGACCCGGTGGAGATAGTCT 60.466 60.000 0.00 0.00 34.81 3.24
263 266 1.320507 GACCCGGTGGAGATAGTCTC 58.679 60.000 0.00 0.00 42.66 3.36
265 268 1.173444 CCCGGTGGAGATAGTCTCGG 61.173 65.000 0.00 0.00 44.28 4.63
267 270 0.945813 CGGTGGAGATAGTCTCGGAC 59.054 60.000 1.26 1.26 44.28 4.79
268 271 0.945813 GGTGGAGATAGTCTCGGACG 59.054 60.000 1.26 0.00 44.28 4.79
269 272 1.666054 GTGGAGATAGTCTCGGACGT 58.334 55.000 0.00 0.00 44.28 4.34
270 273 1.331138 GTGGAGATAGTCTCGGACGTG 59.669 57.143 0.00 0.00 44.28 4.49
271 274 1.208776 TGGAGATAGTCTCGGACGTGA 59.791 52.381 0.00 0.00 44.28 4.35
274 277 3.304123 GGAGATAGTCTCGGACGTGATTG 60.304 52.174 0.00 0.00 44.28 2.67
275 278 3.542648 AGATAGTCTCGGACGTGATTGA 58.457 45.455 0.00 0.00 37.67 2.57
276 279 4.138290 AGATAGTCTCGGACGTGATTGAT 58.862 43.478 0.00 0.00 37.67 2.57
277 280 2.853731 AGTCTCGGACGTGATTGATC 57.146 50.000 0.00 0.00 37.67 2.92
279 282 1.134367 GTCTCGGACGTGATTGATCCA 59.866 52.381 0.00 0.00 32.35 3.41
280 283 2.031870 TCTCGGACGTGATTGATCCAT 58.968 47.619 0.00 0.00 32.35 3.41
281 284 3.004419 GTCTCGGACGTGATTGATCCATA 59.996 47.826 0.00 0.00 32.35 2.74
283 286 5.007682 TCTCGGACGTGATTGATCCATATA 58.992 41.667 0.00 0.00 32.35 0.86
284 287 5.055642 TCGGACGTGATTGATCCATATAC 57.944 43.478 0.00 0.00 32.35 1.47
285 288 4.521256 TCGGACGTGATTGATCCATATACA 59.479 41.667 0.00 0.00 32.35 2.29
286 289 4.859245 CGGACGTGATTGATCCATATACAG 59.141 45.833 0.00 0.00 32.35 2.74
287 290 5.171476 GGACGTGATTGATCCATATACAGG 58.829 45.833 0.00 0.00 32.35 4.00
288 291 5.047306 GGACGTGATTGATCCATATACAGGA 60.047 44.000 0.00 0.00 39.97 3.86
289 292 6.030548 ACGTGATTGATCCATATACAGGAG 57.969 41.667 0.00 0.00 38.83 3.69
290 293 5.047021 ACGTGATTGATCCATATACAGGAGG 60.047 44.000 0.00 0.00 38.83 4.30
293 296 5.249163 TGATTGATCCATATACAGGAGGGTG 59.751 44.000 2.55 0.00 38.83 4.61
295 298 3.143933 TGATCCATATACAGGAGGGTGGA 59.856 47.826 0.00 0.00 38.83 4.02
296 299 3.717507 TCCATATACAGGAGGGTGGAA 57.282 47.619 0.00 0.00 33.15 3.53
297 300 3.314693 TCCATATACAGGAGGGTGGAAC 58.685 50.000 0.00 0.00 33.15 3.62
298 301 3.045634 CCATATACAGGAGGGTGGAACA 58.954 50.000 0.00 0.00 39.98 3.18
299 302 3.458118 CCATATACAGGAGGGTGGAACAA 59.542 47.826 0.00 0.00 44.16 2.83
300 303 8.110143 ATCCATATACAGGAGGGTGGAACAAC 62.110 46.154 0.00 0.00 40.88 3.32
312 315 2.304751 GGAACAACGATATGGTCCGT 57.695 50.000 8.50 0.00 46.61 4.69
313 316 3.441496 GGAACAACGATATGGTCCGTA 57.559 47.619 8.50 0.00 46.61 4.02
314 317 3.784338 GGAACAACGATATGGTCCGTAA 58.216 45.455 8.50 0.00 46.61 3.18
316 319 4.630940 GGAACAACGATATGGTCCGTAAAA 59.369 41.667 8.50 0.00 46.61 1.52
317 320 5.122082 GGAACAACGATATGGTCCGTAAAAA 59.878 40.000 8.50 0.00 46.61 1.94
318 321 5.535043 ACAACGATATGGTCCGTAAAAAC 57.465 39.130 0.00 0.00 38.13 2.43
319 322 4.392754 ACAACGATATGGTCCGTAAAAACC 59.607 41.667 0.00 0.00 38.13 3.27
320 323 4.476628 ACGATATGGTCCGTAAAAACCT 57.523 40.909 0.00 0.00 37.23 3.50
321 324 4.436332 ACGATATGGTCCGTAAAAACCTC 58.564 43.478 0.00 0.00 37.23 3.85
322 325 4.161001 ACGATATGGTCCGTAAAAACCTCT 59.839 41.667 0.00 0.00 37.23 3.69
323 326 5.114081 CGATATGGTCCGTAAAAACCTCTT 58.886 41.667 0.00 0.00 36.47 2.85
324 327 5.233689 CGATATGGTCCGTAAAAACCTCTTC 59.766 44.000 0.00 0.00 36.47 2.87
326 329 2.224597 TGGTCCGTAAAAACCTCTTCCC 60.225 50.000 0.00 0.00 36.47 3.97
329 332 2.303890 TCCGTAAAAACCTCTTCCCTCC 59.696 50.000 0.00 0.00 0.00 4.30
330 333 2.305052 CCGTAAAAACCTCTTCCCTCCT 59.695 50.000 0.00 0.00 0.00 3.69
331 334 3.597255 CGTAAAAACCTCTTCCCTCCTC 58.403 50.000 0.00 0.00 0.00 3.71
332 335 3.007614 CGTAAAAACCTCTTCCCTCCTCA 59.992 47.826 0.00 0.00 0.00 3.86
333 336 4.323562 CGTAAAAACCTCTTCCCTCCTCAT 60.324 45.833 0.00 0.00 0.00 2.90
334 337 3.728385 AAAACCTCTTCCCTCCTCATG 57.272 47.619 0.00 0.00 0.00 3.07
335 338 0.915364 AACCTCTTCCCTCCTCATGC 59.085 55.000 0.00 0.00 0.00 4.06
336 339 1.333636 ACCTCTTCCCTCCTCATGCG 61.334 60.000 0.00 0.00 0.00 4.73
337 340 1.445095 CTCTTCCCTCCTCATGCGG 59.555 63.158 0.00 0.00 0.00 5.69
338 341 1.001631 TCTTCCCTCCTCATGCGGA 59.998 57.895 3.98 3.98 0.00 5.54
340 343 0.250209 CTTCCCTCCTCATGCGGATG 60.250 60.000 11.15 11.15 31.43 3.51
341 344 2.281345 CCCTCCTCATGCGGATGC 60.281 66.667 12.67 0.00 43.20 3.91
377 380 0.325671 TAGAGAGTTGCAGGAGGGGG 60.326 60.000 0.00 0.00 0.00 5.40
440 443 9.996554 CCTACACTGTAAAATCATCATACCATA 57.003 33.333 0.00 0.00 0.00 2.74
445 448 8.938883 ACTGTAAAATCATCATACCATACTCCT 58.061 33.333 0.00 0.00 0.00 3.69
468 471 0.877071 ACTTGCAACGAGCTTCATGG 59.123 50.000 0.00 0.00 45.94 3.66
469 472 1.159285 CTTGCAACGAGCTTCATGGA 58.841 50.000 0.00 0.00 45.94 3.41
471 474 0.035317 TGCAACGAGCTTCATGGACT 59.965 50.000 6.22 0.00 45.94 3.85
483 486 4.230455 CTTCATGGACTAGAGGAAGGGAT 58.770 47.826 0.00 0.00 33.17 3.85
532 535 4.098914 ACAGTTGTGGAAAGCCTTATGA 57.901 40.909 0.00 0.00 34.31 2.15
538 541 5.452078 TGTGGAAAGCCTTATGAAAACTG 57.548 39.130 0.00 0.00 34.31 3.16
543 546 7.657354 GTGGAAAGCCTTATGAAAACTGAAAAT 59.343 33.333 0.00 0.00 34.31 1.82
544 547 8.210265 TGGAAAGCCTTATGAAAACTGAAAATT 58.790 29.630 0.00 0.00 34.31 1.82
557 560 9.758651 GAAAACTGAAAATTGTACCCAAAGTAT 57.241 29.630 0.00 0.00 33.44 2.12
572 575 2.642171 AGTATGGGTCTTCTGGTGGA 57.358 50.000 0.00 0.00 0.00 4.02
593 596 4.279420 GGAGTGTTTTGAGAGGCATTCTTT 59.721 41.667 0.00 0.00 35.87 2.52
594 597 5.192327 AGTGTTTTGAGAGGCATTCTTTG 57.808 39.130 0.00 0.00 35.87 2.77
601 604 4.186926 TGAGAGGCATTCTTTGAGATTCG 58.813 43.478 0.00 0.00 35.87 3.34
603 606 2.019984 AGGCATTCTTTGAGATTCGGC 58.980 47.619 0.00 0.00 0.00 5.54
610 613 4.280436 TCTTTGAGATTCGGCAACCTTA 57.720 40.909 0.00 0.00 0.00 2.69
618 621 6.644592 TGAGATTCGGCAACCTTAAAATTTTG 59.355 34.615 13.76 0.00 0.00 2.44
624 627 3.751175 GCAACCTTAAAATTTTGGAGGGC 59.249 43.478 26.11 20.22 32.42 5.19
627 630 3.007940 ACCTTAAAATTTTGGAGGGCAGC 59.992 43.478 26.11 0.00 32.42 5.25
632 635 1.298953 ATTTTGGAGGGCAGCTAGGA 58.701 50.000 0.00 0.00 0.00 2.94
642 645 2.420967 GGGCAGCTAGGAATCGGTTTTA 60.421 50.000 0.00 0.00 0.00 1.52
645 648 4.261197 GGCAGCTAGGAATCGGTTTTATTG 60.261 45.833 0.00 0.00 0.00 1.90
646 649 4.574828 GCAGCTAGGAATCGGTTTTATTGA 59.425 41.667 0.00 0.00 0.00 2.57
649 652 7.134815 CAGCTAGGAATCGGTTTTATTGAATG 58.865 38.462 0.00 0.00 0.00 2.67
651 654 7.990886 AGCTAGGAATCGGTTTTATTGAATGTA 59.009 33.333 0.00 0.00 0.00 2.29
653 656 9.326413 CTAGGAATCGGTTTTATTGAATGTACT 57.674 33.333 0.00 0.00 0.00 2.73
654 657 8.575649 AGGAATCGGTTTTATTGAATGTACTT 57.424 30.769 0.00 0.00 0.00 2.24
655 658 9.020731 AGGAATCGGTTTTATTGAATGTACTTT 57.979 29.630 0.00 0.00 0.00 2.66
656 659 9.285770 GGAATCGGTTTTATTGAATGTACTTTC 57.714 33.333 13.22 13.22 0.00 2.62
659 662 8.155821 TCGGTTTTATTGAATGTACTTTCACA 57.844 30.769 20.40 13.43 35.42 3.58
661 664 9.061610 CGGTTTTATTGAATGTACTTTCACATC 57.938 33.333 20.40 10.04 38.19 3.06
662 665 9.906660 GGTTTTATTGAATGTACTTTCACATCA 57.093 29.630 20.40 9.22 38.19 3.07
735 4440 7.741198 TCAAATTTTGCAAAGTTTGACTTCAG 58.259 30.769 38.06 22.81 44.38 3.02
736 4441 7.387397 TCAAATTTTGCAAAGTTTGACTTCAGT 59.613 29.630 38.06 14.73 44.38 3.41
737 4442 6.892310 ATTTTGCAAAGTTTGACTTCAGTC 57.108 33.333 19.82 0.00 37.47 3.51
753 4458 8.654230 GACTTCAGTCAAATCTAATATGCAGA 57.346 34.615 1.86 0.00 44.18 4.26
755 4460 8.263640 ACTTCAGTCAAATCTAATATGCAGACT 58.736 33.333 0.00 0.00 35.66 3.24
756 4461 9.755804 CTTCAGTCAAATCTAATATGCAGACTA 57.244 33.333 0.00 0.00 33.72 2.59
767 4472 8.988934 TCTAATATGCAGACTAAATAAAAGCGG 58.011 33.333 0.00 0.00 0.00 5.52
768 4473 7.801716 AATATGCAGACTAAATAAAAGCGGA 57.198 32.000 0.00 0.00 0.00 5.54
769 4474 5.741388 ATGCAGACTAAATAAAAGCGGAG 57.259 39.130 0.00 0.00 0.00 4.63
770 4475 3.938963 TGCAGACTAAATAAAAGCGGAGG 59.061 43.478 0.00 0.00 0.00 4.30
771 4476 3.312697 GCAGACTAAATAAAAGCGGAGGG 59.687 47.826 0.00 0.00 0.00 4.30
772 4477 4.766375 CAGACTAAATAAAAGCGGAGGGA 58.234 43.478 0.00 0.00 0.00 4.20
773 4478 4.811557 CAGACTAAATAAAAGCGGAGGGAG 59.188 45.833 0.00 0.00 0.00 4.30
774 4479 4.470304 AGACTAAATAAAAGCGGAGGGAGT 59.530 41.667 0.00 0.00 0.00 3.85
775 4480 5.659971 AGACTAAATAAAAGCGGAGGGAGTA 59.340 40.000 0.00 0.00 0.00 2.59
776 4481 6.155737 AGACTAAATAAAAGCGGAGGGAGTAA 59.844 38.462 0.00 0.00 0.00 2.24
777 4482 6.896883 ACTAAATAAAAGCGGAGGGAGTAAT 58.103 36.000 0.00 0.00 0.00 1.89
778 4483 8.026396 ACTAAATAAAAGCGGAGGGAGTAATA 57.974 34.615 0.00 0.00 0.00 0.98
779 4484 7.930325 ACTAAATAAAAGCGGAGGGAGTAATAC 59.070 37.037 0.00 0.00 0.00 1.89
780 4485 3.555527 AAAAGCGGAGGGAGTAATACC 57.444 47.619 0.00 0.00 0.00 2.73
972 4789 2.774799 GCTTTCGCCCGCATCCATT 61.775 57.895 0.00 0.00 0.00 3.16
973 4790 1.356624 CTTTCGCCCGCATCCATTC 59.643 57.895 0.00 0.00 0.00 2.67
974 4791 2.063541 CTTTCGCCCGCATCCATTCC 62.064 60.000 0.00 0.00 0.00 3.01
975 4792 2.828480 TTTCGCCCGCATCCATTCCA 62.828 55.000 0.00 0.00 0.00 3.53
976 4793 2.595463 CGCCCGCATCCATTCCAT 60.595 61.111 0.00 0.00 0.00 3.41
1091 4908 3.019003 GCCTCGTGCAAGCCTCCTA 62.019 63.158 0.00 0.00 40.77 2.94
1092 4909 1.153549 CCTCGTGCAAGCCTCCTAC 60.154 63.158 0.00 0.00 0.00 3.18
1391 5208 2.403378 GCCGCACCCGCTGATAAAA 61.403 57.895 0.00 0.00 35.30 1.52
1452 5269 1.079750 GTCTTCCGTGAGTGCCTCC 60.080 63.158 0.50 0.00 0.00 4.30
1523 5340 7.915293 TTGTTGTTGATTGACTTCCGTATAT 57.085 32.000 0.00 0.00 0.00 0.86
1524 5341 9.438228 TTTGTTGTTGATTGACTTCCGTATATA 57.562 29.630 0.00 0.00 0.00 0.86
1669 5486 2.097825 AGTGGAAATCTTGCATGGCTC 58.902 47.619 0.00 0.00 32.24 4.70
1708 5528 6.176975 TCATCTTACATTTGTAAAGCACGG 57.823 37.500 4.82 0.00 39.70 4.94
1782 5602 3.253230 GCATTGAATGTTGTTACCTGGC 58.747 45.455 7.05 0.00 0.00 4.85
1973 5799 1.539827 GGAGAAATCCAAACACCCGTG 59.460 52.381 0.00 0.00 0.00 4.94
2042 5868 8.591114 TGGTAAGTCTATTTCTTAGCACTAGT 57.409 34.615 11.68 0.00 44.94 2.57
2048 5874 9.535878 AGTCTATTTCTTAGCACTAGTTATTGC 57.464 33.333 0.00 0.00 39.16 3.56
2061 5887 7.759433 GCACTAGTTATTGCATTTGGTTTGTAT 59.241 33.333 0.00 0.00 38.68 2.29
2292 6136 0.974010 CTGCATGGCCCATTTCCAGT 60.974 55.000 0.00 0.00 36.98 4.00
2298 6142 3.756082 TGGCCCATTTCCAGTAATCTT 57.244 42.857 0.00 0.00 0.00 2.40
2341 6185 8.589701 TCTCTAAATACCGATGCTGGATATTA 57.410 34.615 0.00 0.00 0.00 0.98
2356 6200 7.450944 TGCTGGATATTATGGATTTAATGTGCA 59.549 33.333 0.00 0.00 32.77 4.57
2390 6234 8.291191 TGGTCAGATGCATAATGTTTGAAATA 57.709 30.769 0.00 0.00 0.00 1.40
2481 6570 2.900122 AACTTCGTGAATCCAATGCG 57.100 45.000 0.00 0.00 0.00 4.73
2527 6616 2.421107 CCATGTGCCTTGAGAGCTATGT 60.421 50.000 0.00 0.00 0.00 2.29
2534 6626 4.653801 TGCCTTGAGAGCTATGTACCATTA 59.346 41.667 0.00 0.00 0.00 1.90
2537 6629 6.370166 GCCTTGAGAGCTATGTACCATTATTC 59.630 42.308 0.00 0.00 0.00 1.75
2538 6630 7.675062 CCTTGAGAGCTATGTACCATTATTCT 58.325 38.462 0.00 0.00 0.00 2.40
2539 6631 8.153550 CCTTGAGAGCTATGTACCATTATTCTT 58.846 37.037 0.00 0.00 0.00 2.52
2626 6719 9.542462 GGTATATCTCAACAAGTATGTGCTAAA 57.458 33.333 0.00 0.00 40.46 1.85
2647 6740 2.396601 TGCTTTTTCATCTTGCAAGCG 58.603 42.857 21.99 14.70 42.35 4.68
2664 6757 9.831737 CTTGCAAGCGCTTATTTAAATATCTAT 57.168 29.630 24.55 0.00 39.64 1.98
2716 6853 5.065218 AGACGCATGATTATGTTTGACCTTC 59.935 40.000 0.00 0.00 36.65 3.46
2722 6859 8.935844 GCATGATTATGTTTGACCTTCGATATA 58.064 33.333 0.00 0.00 36.65 0.86
2739 6877 6.780901 TCGATATATGAGTCCCTACTGAACT 58.219 40.000 0.00 0.00 35.56 3.01
2740 6878 7.914859 TCGATATATGAGTCCCTACTGAACTA 58.085 38.462 0.00 0.00 35.56 2.24
2741 6879 7.823310 TCGATATATGAGTCCCTACTGAACTAC 59.177 40.741 0.00 0.00 35.56 2.73
2742 6880 7.825270 CGATATATGAGTCCCTACTGAACTACT 59.175 40.741 0.00 0.00 35.56 2.57
2743 6881 9.169592 GATATATGAGTCCCTACTGAACTACTC 57.830 40.741 0.00 0.00 35.56 2.59
2744 6882 3.965694 TGAGTCCCTACTGAACTACTCC 58.034 50.000 0.00 0.00 35.56 3.85
2745 6883 3.289836 GAGTCCCTACTGAACTACTCCC 58.710 54.545 0.00 0.00 35.56 4.30
2746 6884 2.927685 AGTCCCTACTGAACTACTCCCT 59.072 50.000 0.00 0.00 33.57 4.20
2747 6885 3.053470 AGTCCCTACTGAACTACTCCCTC 60.053 52.174 0.00 0.00 33.57 4.30
2748 6886 2.244252 TCCCTACTGAACTACTCCCTCC 59.756 54.545 0.00 0.00 0.00 4.30
2749 6887 2.299521 CCTACTGAACTACTCCCTCCG 58.700 57.143 0.00 0.00 0.00 4.63
2750 6888 2.356947 CCTACTGAACTACTCCCTCCGT 60.357 54.545 0.00 0.00 0.00 4.69
2751 6889 1.836802 ACTGAACTACTCCCTCCGTC 58.163 55.000 0.00 0.00 0.00 4.79
2752 6890 1.104630 CTGAACTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
2753 6891 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
2754 6892 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
2755 6893 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2756 6894 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2757 6895 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2758 6896 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2759 6897 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2760 6898 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2761 6899 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2762 6900 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2763 6901 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2764 6902 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2765 6903 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2766 6904 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2767 6905 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2768 6906 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2769 6907 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2770 6908 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2771 6909 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2772 6910 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2773 6911 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2774 6912 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2775 6913 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2776 6914 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2777 6915 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2778 6916 7.855904 CCATAATATAAGAGCGTTTTTGACACC 59.144 37.037 0.00 0.00 0.00 4.16
2779 6917 6.811253 AATATAAGAGCGTTTTTGACACCA 57.189 33.333 0.00 0.00 0.00 4.17
2780 6918 4.749245 ATAAGAGCGTTTTTGACACCAG 57.251 40.909 0.00 0.00 0.00 4.00
2781 6919 2.038387 AGAGCGTTTTTGACACCAGT 57.962 45.000 0.00 0.00 0.00 4.00
2782 6920 1.670811 AGAGCGTTTTTGACACCAGTG 59.329 47.619 0.00 0.00 0.00 3.66
2783 6921 0.100503 AGCGTTTTTGACACCAGTGC 59.899 50.000 0.00 0.00 0.00 4.40
2784 6922 0.179150 GCGTTTTTGACACCAGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
2785 6923 1.826327 CGTTTTTGACACCAGTGCAG 58.174 50.000 0.00 0.00 0.00 4.41
2786 6924 1.132262 CGTTTTTGACACCAGTGCAGT 59.868 47.619 0.00 0.00 0.00 4.40
2787 6925 2.529151 GTTTTTGACACCAGTGCAGTG 58.471 47.619 14.95 14.95 41.15 3.66
2814 6952 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2815 6953 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2816 6954 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2817 6955 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2818 6956 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2819 6957 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2820 6958 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2821 6959 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2940 7078 6.727394 ACAGGGGTTTCATTGCTATTTAGTA 58.273 36.000 0.00 0.00 0.00 1.82
2941 7079 6.828785 ACAGGGGTTTCATTGCTATTTAGTAG 59.171 38.462 0.00 0.00 0.00 2.57
2946 7084 7.012421 GGGTTTCATTGCTATTTAGTAGAGTGG 59.988 40.741 0.00 0.00 31.71 4.00
2984 7122 7.040062 TGTGAAACCAACCTTACCTTGATAATG 60.040 37.037 0.00 0.00 34.36 1.90
2986 7124 3.945285 ACCAACCTTACCTTGATAATGCG 59.055 43.478 0.00 0.00 0.00 4.73
2990 7128 5.609533 ACCTTACCTTGATAATGCGTACT 57.390 39.130 0.00 0.00 0.00 2.73
2991 7129 6.720112 ACCTTACCTTGATAATGCGTACTA 57.280 37.500 0.00 0.00 0.00 1.82
2992 7130 6.510536 ACCTTACCTTGATAATGCGTACTAC 58.489 40.000 0.00 0.00 0.00 2.73
2993 7131 5.628193 CCTTACCTTGATAATGCGTACTACG 59.372 44.000 4.12 4.12 45.88 3.51
2999 7137 6.694411 CCTTGATAATGCGTACTACGTAGTTT 59.306 38.462 31.58 21.15 44.73 2.66
3027 7165 2.500098 TCCATTTCAGTTACTCCCTCCG 59.500 50.000 0.00 0.00 0.00 4.63
3038 7176 3.560636 ACTCCCTCCGTTCCATAATTG 57.439 47.619 0.00 0.00 0.00 2.32
3043 7181 3.377172 CCCTCCGTTCCATAATTGTTGTC 59.623 47.826 0.00 0.00 0.00 3.18
3045 7183 3.666274 TCCGTTCCATAATTGTTGTCGT 58.334 40.909 0.00 0.00 0.00 4.34
3046 7184 3.433957 TCCGTTCCATAATTGTTGTCGTG 59.566 43.478 0.00 0.00 0.00 4.35
3047 7185 3.433957 CCGTTCCATAATTGTTGTCGTGA 59.566 43.478 0.00 0.00 0.00 4.35
3048 7186 4.094294 CCGTTCCATAATTGTTGTCGTGAT 59.906 41.667 0.00 0.00 0.00 3.06
3049 7187 5.391523 CCGTTCCATAATTGTTGTCGTGATT 60.392 40.000 0.00 0.00 0.00 2.57
3050 7188 6.083630 CGTTCCATAATTGTTGTCGTGATTT 58.916 36.000 0.00 0.00 0.00 2.17
3051 7189 6.032355 CGTTCCATAATTGTTGTCGTGATTTG 59.968 38.462 0.00 0.00 0.00 2.32
3052 7190 6.809630 TCCATAATTGTTGTCGTGATTTGA 57.190 33.333 0.00 0.00 0.00 2.69
3053 7191 7.208225 TCCATAATTGTTGTCGTGATTTGAA 57.792 32.000 0.00 0.00 0.00 2.69
3054 7192 7.081349 TCCATAATTGTTGTCGTGATTTGAAC 58.919 34.615 0.00 0.00 0.00 3.18
3055 7193 6.307800 CCATAATTGTTGTCGTGATTTGAACC 59.692 38.462 0.00 0.00 0.00 3.62
3056 7194 4.909696 ATTGTTGTCGTGATTTGAACCA 57.090 36.364 0.00 0.00 0.00 3.67
3057 7195 4.703645 TTGTTGTCGTGATTTGAACCAA 57.296 36.364 0.00 0.00 0.00 3.67
3058 7196 4.703645 TGTTGTCGTGATTTGAACCAAA 57.296 36.364 0.00 0.00 37.75 3.28
3059 7197 5.060662 TGTTGTCGTGATTTGAACCAAAA 57.939 34.783 0.00 0.00 36.90 2.44
3060 7198 4.859798 TGTTGTCGTGATTTGAACCAAAAC 59.140 37.500 0.00 0.00 36.90 2.43
3061 7199 4.035278 TGTCGTGATTTGAACCAAAACC 57.965 40.909 0.00 0.00 36.90 3.27
3062 7200 3.444034 TGTCGTGATTTGAACCAAAACCA 59.556 39.130 0.00 0.00 36.90 3.67
3063 7201 3.794564 GTCGTGATTTGAACCAAAACCAC 59.205 43.478 13.37 13.37 36.90 4.16
3064 7202 2.786578 CGTGATTTGAACCAAAACCACG 59.213 45.455 22.62 22.62 46.23 4.94
3065 7203 4.035278 GTGATTTGAACCAAAACCACGA 57.965 40.909 0.00 0.00 36.90 4.35
3066 7204 3.794564 GTGATTTGAACCAAAACCACGAC 59.205 43.478 0.00 0.00 36.90 4.34
3067 7205 3.444034 TGATTTGAACCAAAACCACGACA 59.556 39.130 0.00 0.00 36.90 4.35
3068 7206 3.936372 TTTGAACCAAAACCACGACAA 57.064 38.095 0.00 0.00 29.89 3.18
3069 7207 4.457834 TTTGAACCAAAACCACGACAAT 57.542 36.364 0.00 0.00 29.89 2.71
3070 7208 5.578005 TTTGAACCAAAACCACGACAATA 57.422 34.783 0.00 0.00 29.89 1.90
3071 7209 5.578005 TTGAACCAAAACCACGACAATAA 57.422 34.783 0.00 0.00 0.00 1.40
3072 7210 5.776173 TGAACCAAAACCACGACAATAAT 57.224 34.783 0.00 0.00 0.00 1.28
3073 7211 6.150396 TGAACCAAAACCACGACAATAATT 57.850 33.333 0.00 0.00 0.00 1.40
3074 7212 7.273320 TGAACCAAAACCACGACAATAATTA 57.727 32.000 0.00 0.00 0.00 1.40
3079 7217 7.039644 ACCAAAACCACGACAATAATTATGGAA 60.040 33.333 6.86 0.00 0.00 3.53
3107 7260 9.150028 GGAGGGAGTAGTAATTCTATTTCTTCT 57.850 37.037 0.00 0.00 0.00 2.85
3320 7473 4.529769 ACTCTTCATGTGTGATCCTCTTCA 59.470 41.667 0.00 0.00 33.56 3.02
3803 7977 6.881065 GGTAAGAATAGATCATAAGCCATGCA 59.119 38.462 0.00 0.00 34.35 3.96
3842 8019 7.454225 AGCTCCTATTGTTTACTCTGTTTCTT 58.546 34.615 0.00 0.00 0.00 2.52
3890 8070 5.242838 AGGGATGATCGATTCTGAAGTAGAC 59.757 44.000 0.00 0.00 34.43 2.59
3954 8338 7.201522 GCTCATTCTGTAAAATGTGTACATCGA 60.202 37.037 0.00 0.00 37.77 3.59
4092 8494 8.564574 GCTTTAATACATAATCGGACCATTCAA 58.435 33.333 0.00 0.00 0.00 2.69
4541 9083 3.248602 GGCCATCAGTATTTAGCTCGTTG 59.751 47.826 0.00 0.00 0.00 4.10
4551 9093 4.699522 GCTCGTTGAACGGGGCCT 62.700 66.667 20.08 0.00 43.53 5.19
4645 9191 4.003648 ACAATTGGGTTCTCTTCATCGTC 58.996 43.478 10.83 0.00 0.00 4.20
4649 9195 4.655762 TGGGTTCTCTTCATCGTCATAG 57.344 45.455 0.00 0.00 0.00 2.23
4650 9196 4.023980 TGGGTTCTCTTCATCGTCATAGT 58.976 43.478 0.00 0.00 0.00 2.12
4694 9279 6.035217 GGATACTCTTAACGTCCTTTGAGAC 58.965 44.000 9.75 0.00 0.00 3.36
4754 9339 7.782897 TTACTAATCCACTGGATCCATCTAG 57.217 40.000 16.63 10.74 42.27 2.43
4766 9351 8.943085 ACTGGATCCATCTAGACATTCTAAAAT 58.057 33.333 16.63 0.00 37.57 1.82
4779 9364 8.627403 AGACATTCTAAAATATCAATGCAGTGG 58.373 33.333 15.06 0.00 30.63 4.00
4780 9365 7.205297 ACATTCTAAAATATCAATGCAGTGGC 58.795 34.615 15.06 0.00 41.68 5.01
4841 9426 8.635877 AAATCGAAGCTTAGCGGATAATATAG 57.364 34.615 0.00 0.00 0.00 1.31
5005 9594 6.042781 AGTCCAAAGGAACAACTACTGTGATA 59.957 38.462 0.00 0.00 38.67 2.15
5047 9636 3.855154 GCATAGCATCACCTACAGAGTCG 60.855 52.174 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.037136 CAAAGAGAGCCCGCACTGG 61.037 63.158 0.00 0.00 37.55 4.00
5 6 2.684843 GCAAAGAGAGCCCGCACTG 61.685 63.158 0.00 0.00 0.00 3.66
6 7 2.359230 GCAAAGAGAGCCCGCACT 60.359 61.111 0.00 0.00 0.00 4.40
7 8 3.793144 CGCAAAGAGAGCCCGCAC 61.793 66.667 0.00 0.00 0.00 5.34
22 23 1.103398 ACCCTTCAATATGCTGGCGC 61.103 55.000 0.00 0.00 0.00 6.53
23 24 2.254546 TACCCTTCAATATGCTGGCG 57.745 50.000 0.00 0.00 0.00 5.69
63 64 4.584325 AGGAGACACATTAGCTTGCAAAAA 59.416 37.500 0.00 0.00 0.00 1.94
73 74 8.006298 ACTCAAAGATCTAGGAGACACATTAG 57.994 38.462 23.27 2.73 0.00 1.73
76 77 6.892456 TGTACTCAAAGATCTAGGAGACACAT 59.108 38.462 23.27 8.79 0.00 3.21
78 79 6.761099 TGTACTCAAAGATCTAGGAGACAC 57.239 41.667 23.27 19.58 0.00 3.67
81 82 6.673583 TCCATGTACTCAAAGATCTAGGAGA 58.326 40.000 23.27 3.47 0.00 3.71
97 99 5.527582 CCACTACAAATAGCCTTCCATGTAC 59.472 44.000 0.00 0.00 30.75 2.90
127 129 1.187567 AGCCCCACATCCAAAGCAAC 61.188 55.000 0.00 0.00 0.00 4.17
128 130 0.899717 GAGCCCCACATCCAAAGCAA 60.900 55.000 0.00 0.00 0.00 3.91
135 137 1.106285 GTTTGATGAGCCCCACATCC 58.894 55.000 0.00 0.00 42.11 3.51
136 138 0.734889 CGTTTGATGAGCCCCACATC 59.265 55.000 0.00 0.00 42.81 3.06
145 147 4.929211 TCCATCACTAACACGTTTGATGAG 59.071 41.667 19.27 12.53 45.50 2.90
177 179 8.076178 GGGATCCATTTATTCGTTAATGTGAAG 58.924 37.037 15.23 0.00 31.38 3.02
190 193 8.873144 CCTGACAATATTTGGGATCCATTTATT 58.127 33.333 15.23 8.15 31.53 1.40
224 227 1.330521 CGTTACTCAATCCGCCCATTG 59.669 52.381 0.00 0.00 35.39 2.82
225 228 1.208535 TCGTTACTCAATCCGCCCATT 59.791 47.619 0.00 0.00 0.00 3.16
226 229 0.828022 TCGTTACTCAATCCGCCCAT 59.172 50.000 0.00 0.00 0.00 4.00
228 231 0.808847 GGTCGTTACTCAATCCGCCC 60.809 60.000 0.00 0.00 0.00 6.13
229 232 0.808847 GGGTCGTTACTCAATCCGCC 60.809 60.000 0.00 0.00 0.00 6.13
232 235 0.533951 ACCGGGTCGTTACTCAATCC 59.466 55.000 6.32 0.00 0.00 3.01
233 236 1.636988 CACCGGGTCGTTACTCAATC 58.363 55.000 6.32 0.00 0.00 2.67
234 237 0.248289 CCACCGGGTCGTTACTCAAT 59.752 55.000 6.32 0.00 0.00 2.57
235 238 0.827089 TCCACCGGGTCGTTACTCAA 60.827 55.000 6.32 0.00 34.93 3.02
236 239 1.228521 TCCACCGGGTCGTTACTCA 60.229 57.895 6.32 0.00 34.93 3.41
237 240 0.962356 TCTCCACCGGGTCGTTACTC 60.962 60.000 6.32 0.00 34.93 2.59
239 242 1.336125 CTATCTCCACCGGGTCGTTAC 59.664 57.143 6.32 0.00 34.93 2.50
240 243 1.064463 ACTATCTCCACCGGGTCGTTA 60.064 52.381 6.32 0.00 34.93 3.18
241 244 0.324091 ACTATCTCCACCGGGTCGTT 60.324 55.000 6.32 0.00 34.93 3.85
242 245 0.750911 GACTATCTCCACCGGGTCGT 60.751 60.000 6.32 0.00 34.93 4.34
243 246 0.465824 AGACTATCTCCACCGGGTCG 60.466 60.000 6.32 0.00 34.93 4.79
245 248 0.465824 CGAGACTATCTCCACCGGGT 60.466 60.000 6.32 0.00 40.34 5.28
246 249 1.173444 CCGAGACTATCTCCACCGGG 61.173 65.000 6.32 0.00 40.34 5.73
250 253 1.331138 CACGTCCGAGACTATCTCCAC 59.669 57.143 0.30 0.00 40.34 4.02
251 254 1.208776 TCACGTCCGAGACTATCTCCA 59.791 52.381 0.30 0.00 40.34 3.86
252 255 1.950828 TCACGTCCGAGACTATCTCC 58.049 55.000 0.30 0.00 40.34 3.71
253 256 3.560481 TCAATCACGTCCGAGACTATCTC 59.440 47.826 0.00 0.00 40.06 2.75
254 257 3.542648 TCAATCACGTCCGAGACTATCT 58.457 45.455 0.00 0.00 0.00 1.98
257 260 2.617308 GGATCAATCACGTCCGAGACTA 59.383 50.000 0.00 0.00 0.00 2.59
258 261 1.405821 GGATCAATCACGTCCGAGACT 59.594 52.381 0.00 0.00 0.00 3.24
259 262 1.134367 TGGATCAATCACGTCCGAGAC 59.866 52.381 0.00 0.00 34.72 3.36
260 263 1.470051 TGGATCAATCACGTCCGAGA 58.530 50.000 0.00 0.00 34.72 4.04
262 265 4.521256 TGTATATGGATCAATCACGTCCGA 59.479 41.667 0.00 0.00 34.72 4.55
263 266 4.805219 TGTATATGGATCAATCACGTCCG 58.195 43.478 0.00 0.00 34.72 4.79
265 268 6.025749 TCCTGTATATGGATCAATCACGTC 57.974 41.667 0.00 0.00 0.00 4.34
267 270 5.414360 CCTCCTGTATATGGATCAATCACG 58.586 45.833 0.00 0.00 32.56 4.35
268 271 5.249393 ACCCTCCTGTATATGGATCAATCAC 59.751 44.000 0.00 0.00 32.56 3.06
269 272 5.249163 CACCCTCCTGTATATGGATCAATCA 59.751 44.000 0.00 0.00 32.56 2.57
270 273 5.338708 CCACCCTCCTGTATATGGATCAATC 60.339 48.000 0.00 0.00 32.56 2.67
271 274 4.537688 CCACCCTCCTGTATATGGATCAAT 59.462 45.833 0.00 0.00 32.56 2.57
274 277 3.791320 TCCACCCTCCTGTATATGGATC 58.209 50.000 0.00 0.00 31.30 3.36
275 278 3.910627 GTTCCACCCTCCTGTATATGGAT 59.089 47.826 0.00 0.00 36.18 3.41
276 279 3.311028 TGTTCCACCCTCCTGTATATGGA 60.311 47.826 0.00 0.00 34.44 3.41
277 280 3.045634 TGTTCCACCCTCCTGTATATGG 58.954 50.000 0.00 0.00 0.00 2.74
279 282 3.134081 CGTTGTTCCACCCTCCTGTATAT 59.866 47.826 0.00 0.00 0.00 0.86
280 283 2.498481 CGTTGTTCCACCCTCCTGTATA 59.502 50.000 0.00 0.00 0.00 1.47
281 284 1.278127 CGTTGTTCCACCCTCCTGTAT 59.722 52.381 0.00 0.00 0.00 2.29
283 286 1.052124 TCGTTGTTCCACCCTCCTGT 61.052 55.000 0.00 0.00 0.00 4.00
284 287 0.324943 ATCGTTGTTCCACCCTCCTG 59.675 55.000 0.00 0.00 0.00 3.86
285 288 1.946984 TATCGTTGTTCCACCCTCCT 58.053 50.000 0.00 0.00 0.00 3.69
286 289 2.561569 CATATCGTTGTTCCACCCTCC 58.438 52.381 0.00 0.00 0.00 4.30
287 290 2.093128 ACCATATCGTTGTTCCACCCTC 60.093 50.000 0.00 0.00 0.00 4.30
288 291 1.913419 ACCATATCGTTGTTCCACCCT 59.087 47.619 0.00 0.00 0.00 4.34
289 292 2.285977 GACCATATCGTTGTTCCACCC 58.714 52.381 0.00 0.00 0.00 4.61
290 293 2.285977 GGACCATATCGTTGTTCCACC 58.714 52.381 0.00 0.00 0.00 4.61
293 296 2.304751 ACGGACCATATCGTTGTTCC 57.695 50.000 0.00 0.00 36.04 3.62
295 298 5.106594 GGTTTTTACGGACCATATCGTTGTT 60.107 40.000 0.00 0.00 40.31 2.83
296 299 4.392754 GGTTTTTACGGACCATATCGTTGT 59.607 41.667 0.00 0.00 40.31 3.32
297 300 4.632688 AGGTTTTTACGGACCATATCGTTG 59.367 41.667 0.00 0.00 40.31 4.10
298 301 4.835678 AGGTTTTTACGGACCATATCGTT 58.164 39.130 0.00 0.00 40.31 3.85
299 302 4.161001 AGAGGTTTTTACGGACCATATCGT 59.839 41.667 0.00 0.00 42.55 3.73
300 303 4.690122 AGAGGTTTTTACGGACCATATCG 58.310 43.478 0.00 0.00 38.42 2.92
301 304 5.526479 GGAAGAGGTTTTTACGGACCATATC 59.474 44.000 0.00 0.00 38.42 1.63
302 305 5.434408 GGAAGAGGTTTTTACGGACCATAT 58.566 41.667 0.00 0.00 38.42 1.78
304 307 3.560668 GGGAAGAGGTTTTTACGGACCAT 60.561 47.826 0.00 0.00 38.42 3.55
306 309 2.039480 AGGGAAGAGGTTTTTACGGACC 59.961 50.000 0.00 0.00 36.15 4.46
307 310 3.332919 GAGGGAAGAGGTTTTTACGGAC 58.667 50.000 0.00 0.00 0.00 4.79
308 311 2.303890 GGAGGGAAGAGGTTTTTACGGA 59.696 50.000 0.00 0.00 0.00 4.69
309 312 2.305052 AGGAGGGAAGAGGTTTTTACGG 59.695 50.000 0.00 0.00 0.00 4.02
310 313 3.007614 TGAGGAGGGAAGAGGTTTTTACG 59.992 47.826 0.00 0.00 0.00 3.18
312 315 4.567747 GCATGAGGAGGGAAGAGGTTTTTA 60.568 45.833 0.00 0.00 0.00 1.52
313 316 3.815757 GCATGAGGAGGGAAGAGGTTTTT 60.816 47.826 0.00 0.00 0.00 1.94
314 317 2.291217 GCATGAGGAGGGAAGAGGTTTT 60.291 50.000 0.00 0.00 0.00 2.43
316 319 0.915364 GCATGAGGAGGGAAGAGGTT 59.085 55.000 0.00 0.00 0.00 3.50
317 320 1.333636 CGCATGAGGAGGGAAGAGGT 61.334 60.000 0.00 0.00 0.00 3.85
318 321 1.445095 CGCATGAGGAGGGAAGAGG 59.555 63.158 0.00 0.00 0.00 3.69
319 322 1.045350 TCCGCATGAGGAGGGAAGAG 61.045 60.000 14.91 0.00 37.03 2.85
320 323 0.399091 ATCCGCATGAGGAGGGAAGA 60.399 55.000 23.08 0.00 44.55 2.87
321 324 0.250209 CATCCGCATGAGGAGGGAAG 60.250 60.000 23.08 7.20 44.55 3.46
322 325 1.832219 CATCCGCATGAGGAGGGAA 59.168 57.895 23.08 0.00 44.55 3.97
323 326 2.811514 GCATCCGCATGAGGAGGGA 61.812 63.158 27.70 11.38 44.55 4.20
324 327 2.281345 GCATCCGCATGAGGAGGG 60.281 66.667 27.70 20.31 44.55 4.30
329 332 1.522355 AGAACCGCATCCGCATGAG 60.522 57.895 0.00 0.00 38.40 2.90
330 333 1.815003 CAGAACCGCATCCGCATGA 60.815 57.895 0.00 0.00 38.40 3.07
331 334 1.368345 TTCAGAACCGCATCCGCATG 61.368 55.000 0.00 0.00 38.40 4.06
332 335 1.078497 TTCAGAACCGCATCCGCAT 60.078 52.632 0.00 0.00 38.40 4.73
333 336 2.032634 GTTCAGAACCGCATCCGCA 61.033 57.895 1.29 0.00 38.40 5.69
334 337 1.369091 ATGTTCAGAACCGCATCCGC 61.369 55.000 10.93 0.00 0.00 5.54
335 338 0.652592 GATGTTCAGAACCGCATCCG 59.347 55.000 10.93 0.00 33.59 4.18
336 339 1.017387 GGATGTTCAGAACCGCATCC 58.983 55.000 10.93 12.18 46.84 3.51
337 340 1.017387 GGGATGTTCAGAACCGCATC 58.983 55.000 10.93 7.18 37.56 3.91
338 341 0.620556 AGGGATGTTCAGAACCGCAT 59.379 50.000 10.93 0.00 0.00 4.73
340 343 2.093658 TCTAAGGGATGTTCAGAACCGC 60.094 50.000 10.93 4.86 0.00 5.68
341 344 3.447586 TCTCTAAGGGATGTTCAGAACCG 59.552 47.826 10.93 0.00 0.00 4.44
346 349 4.187694 GCAACTCTCTAAGGGATGTTCAG 58.812 47.826 0.00 0.00 0.00 3.02
348 351 4.187694 CTGCAACTCTCTAAGGGATGTTC 58.812 47.826 0.00 0.00 0.00 3.18
401 404 4.466827 ACAGTGTAGGTTCCCGAATTTTT 58.533 39.130 0.00 0.00 0.00 1.94
440 443 0.464036 TCGTTGCAAGTCACAGGAGT 59.536 50.000 0.00 0.00 0.00 3.85
445 448 0.937304 GAAGCTCGTTGCAAGTCACA 59.063 50.000 0.00 0.00 45.94 3.58
468 471 3.892588 CACTACCATCCCTTCCTCTAGTC 59.107 52.174 0.00 0.00 0.00 2.59
469 472 3.374318 CCACTACCATCCCTTCCTCTAGT 60.374 52.174 0.00 0.00 0.00 2.57
471 474 2.090719 CCCACTACCATCCCTTCCTCTA 60.091 54.545 0.00 0.00 0.00 2.43
532 535 9.541143 CATACTTTGGGTACAATTTTCAGTTTT 57.459 29.630 0.00 0.00 36.29 2.43
557 560 0.399949 ACACTCCACCAGAAGACCCA 60.400 55.000 0.00 0.00 0.00 4.51
572 575 4.889409 TCAAAGAATGCCTCTCAAAACACT 59.111 37.500 0.00 0.00 31.02 3.55
593 596 5.975693 AATTTTAAGGTTGCCGAATCTCA 57.024 34.783 0.00 0.00 0.00 3.27
594 597 6.090763 CCAAAATTTTAAGGTTGCCGAATCTC 59.909 38.462 2.44 0.00 0.00 2.75
601 604 4.323417 CCCTCCAAAATTTTAAGGTTGCC 58.677 43.478 21.40 0.00 0.00 4.52
603 606 4.967036 TGCCCTCCAAAATTTTAAGGTTG 58.033 39.130 21.40 13.06 0.00 3.77
610 613 2.833943 CCTAGCTGCCCTCCAAAATTTT 59.166 45.455 0.00 0.00 0.00 1.82
618 621 1.369321 CGATTCCTAGCTGCCCTCC 59.631 63.158 0.00 0.00 0.00 4.30
624 627 6.677781 TTCAATAAAACCGATTCCTAGCTG 57.322 37.500 0.00 0.00 0.00 4.24
627 630 9.326413 AGTACATTCAATAAAACCGATTCCTAG 57.674 33.333 0.00 0.00 0.00 3.02
632 635 9.620660 GTGAAAGTACATTCAATAAAACCGATT 57.379 29.630 14.64 0.00 40.76 3.34
696 2197 7.551585 TGCAAAATTTGACCAAGTTTAGAGAA 58.448 30.769 10.26 0.00 31.37 2.87
704 2205 6.429385 TCAAACTTTGCAAAATTTGACCAAGT 59.571 30.769 33.20 14.31 36.42 3.16
705 2206 6.840075 TCAAACTTTGCAAAATTTGACCAAG 58.160 32.000 33.20 15.61 36.42 3.61
706 2207 6.808008 TCAAACTTTGCAAAATTTGACCAA 57.192 29.167 33.20 18.66 36.42 3.67
710 2211 7.387397 ACTGAAGTCAAACTTTGCAAAATTTGA 59.613 29.630 33.20 33.20 38.80 2.69
711 2212 7.520686 ACTGAAGTCAAACTTTGCAAAATTTG 58.479 30.769 30.47 30.47 38.80 2.32
742 4447 8.988934 TCCGCTTTTATTTAGTCTGCATATTAG 58.011 33.333 0.00 0.00 0.00 1.73
744 4449 7.041098 CCTCCGCTTTTATTTAGTCTGCATATT 60.041 37.037 0.00 0.00 0.00 1.28
745 4450 6.428159 CCTCCGCTTTTATTTAGTCTGCATAT 59.572 38.462 0.00 0.00 0.00 1.78
748 4453 3.938963 CCTCCGCTTTTATTTAGTCTGCA 59.061 43.478 0.00 0.00 0.00 4.41
749 4454 3.312697 CCCTCCGCTTTTATTTAGTCTGC 59.687 47.826 0.00 0.00 0.00 4.26
750 4455 4.766375 TCCCTCCGCTTTTATTTAGTCTG 58.234 43.478 0.00 0.00 0.00 3.51
751 4456 4.470304 ACTCCCTCCGCTTTTATTTAGTCT 59.530 41.667 0.00 0.00 0.00 3.24
752 4457 4.767478 ACTCCCTCCGCTTTTATTTAGTC 58.233 43.478 0.00 0.00 0.00 2.59
753 4458 4.838904 ACTCCCTCCGCTTTTATTTAGT 57.161 40.909 0.00 0.00 0.00 2.24
755 4460 7.219322 GGTATTACTCCCTCCGCTTTTATTTA 58.781 38.462 0.00 0.00 0.00 1.40
756 4461 6.060136 GGTATTACTCCCTCCGCTTTTATTT 58.940 40.000 0.00 0.00 0.00 1.40
758 4463 4.041321 GGGTATTACTCCCTCCGCTTTTAT 59.959 45.833 0.00 0.00 41.58 1.40
759 4464 3.389002 GGGTATTACTCCCTCCGCTTTTA 59.611 47.826 0.00 0.00 41.58 1.52
760 4465 2.172082 GGGTATTACTCCCTCCGCTTTT 59.828 50.000 0.00 0.00 41.58 2.27
761 4466 1.767088 GGGTATTACTCCCTCCGCTTT 59.233 52.381 0.00 0.00 41.58 3.51
762 4467 1.421480 GGGTATTACTCCCTCCGCTT 58.579 55.000 0.00 0.00 41.58 4.68
763 4468 3.144613 GGGTATTACTCCCTCCGCT 57.855 57.895 0.00 0.00 41.58 5.52
838 4543 4.121317 TGTACTCCGTACTGGTGTTTTTG 58.879 43.478 13.79 0.00 41.66 2.44
894 4709 1.334960 CGTGTCTTTTTGGCGCATCTT 60.335 47.619 10.83 0.00 0.00 2.40
1333 5150 2.003658 AAACACACCAAGCGCCACTG 62.004 55.000 2.29 0.00 0.00 3.66
1391 5208 1.908793 CAGGACGGAGACCCAGTGT 60.909 63.158 0.00 0.00 45.20 3.55
1452 5269 1.067706 TGCAACATGGAAGCCATTTCG 60.068 47.619 0.00 0.00 42.23 3.46
1539 5356 7.302524 TCTCAATTTATAACCGTGCAAACTTC 58.697 34.615 0.00 0.00 0.00 3.01
1543 5360 6.151985 ACCATCTCAATTTATAACCGTGCAAA 59.848 34.615 0.00 0.00 0.00 3.68
1708 5528 6.470235 CACTCTCACGGAATATTTTTCATTGC 59.530 38.462 0.00 0.00 0.00 3.56
1782 5602 6.713903 AGGTATTACTGGCATTCATCATTCAG 59.286 38.462 0.00 0.00 0.00 3.02
1897 5723 3.907221 AGCACCATGCCATTAATTCTCT 58.093 40.909 0.00 0.00 46.52 3.10
1909 5735 3.641437 TCAAACAGTTTAGCACCATGC 57.359 42.857 0.00 0.00 45.46 4.06
2285 6129 8.635765 AACAAATCAGCTAAGATTACTGGAAA 57.364 30.769 0.07 0.00 37.24 3.13
2327 6171 8.896744 ACATTAAATCCATAATATCCAGCATCG 58.103 33.333 0.00 0.00 0.00 3.84
2341 6185 5.743636 AACCTTGTGCACATTAAATCCAT 57.256 34.783 22.39 0.00 0.00 3.41
2356 6200 2.665165 TGCATCTGACCAAAACCTTGT 58.335 42.857 0.00 0.00 0.00 3.16
2481 6570 9.058424 GGCGTAATTGACAAAGAAAATACTAAC 57.942 33.333 0.00 0.00 0.00 2.34
2527 6616 5.818678 ACGGGCAGATAAGAATAATGGTA 57.181 39.130 0.00 0.00 0.00 3.25
2534 6626 5.192927 TCAATGAAACGGGCAGATAAGAAT 58.807 37.500 0.00 0.00 0.00 2.40
2537 6629 4.155826 TGTTCAATGAAACGGGCAGATAAG 59.844 41.667 0.00 0.00 31.58 1.73
2538 6630 4.075682 TGTTCAATGAAACGGGCAGATAA 58.924 39.130 0.00 0.00 31.58 1.75
2539 6631 3.680490 TGTTCAATGAAACGGGCAGATA 58.320 40.909 0.00 0.00 31.58 1.98
2600 6693 9.542462 TTTAGCACATACTTGTTGAGATATACC 57.458 33.333 0.00 0.00 32.34 2.73
2626 6719 2.991190 CGCTTGCAAGATGAAAAAGCAT 59.009 40.909 30.39 0.00 42.63 3.79
2628 6721 1.125566 GCGCTTGCAAGATGAAAAAGC 59.874 47.619 30.39 10.92 39.84 3.51
2664 6757 9.391006 CCTGATGCCTAATTAAAAAGTACTACA 57.609 33.333 0.00 0.00 0.00 2.74
2716 6853 7.825270 AGTAGTTCAGTAGGGACTCATATATCG 59.175 40.741 0.00 0.00 41.75 2.92
2722 6859 4.538738 GGAGTAGTTCAGTAGGGACTCAT 58.461 47.826 0.00 0.00 41.75 2.90
2739 6877 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2740 6878 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2741 6879 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2742 6880 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2743 6881 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2744 6882 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2745 6883 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2746 6884 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2747 6885 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2748 6886 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2749 6887 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2750 6888 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2751 6889 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2752 6890 7.855904 GGTGTCAAAAACGCTCTTATATTATGG 59.144 37.037 0.00 0.00 38.49 2.74
2753 6891 8.394877 TGGTGTCAAAAACGCTCTTATATTATG 58.605 33.333 0.00 0.00 38.49 1.90
2754 6892 8.500753 TGGTGTCAAAAACGCTCTTATATTAT 57.499 30.769 0.00 0.00 38.49 1.28
2755 6893 7.604927 ACTGGTGTCAAAAACGCTCTTATATTA 59.395 33.333 0.00 0.00 38.49 0.98
2756 6894 6.430000 ACTGGTGTCAAAAACGCTCTTATATT 59.570 34.615 0.00 0.00 38.49 1.28
2757 6895 5.938125 ACTGGTGTCAAAAACGCTCTTATAT 59.062 36.000 0.00 0.00 38.49 0.86
2758 6896 5.178623 CACTGGTGTCAAAAACGCTCTTATA 59.821 40.000 0.00 0.00 38.49 0.98
2759 6897 4.024048 CACTGGTGTCAAAAACGCTCTTAT 60.024 41.667 0.00 0.00 38.49 1.73
2760 6898 3.311322 CACTGGTGTCAAAAACGCTCTTA 59.689 43.478 0.00 0.00 38.49 2.10
2761 6899 2.097466 CACTGGTGTCAAAAACGCTCTT 59.903 45.455 0.00 0.00 38.49 2.85
2762 6900 1.670811 CACTGGTGTCAAAAACGCTCT 59.329 47.619 0.00 0.00 38.49 4.09
2763 6901 1.859998 GCACTGGTGTCAAAAACGCTC 60.860 52.381 2.64 0.00 38.49 5.03
2764 6902 0.100503 GCACTGGTGTCAAAAACGCT 59.899 50.000 2.64 0.00 38.49 5.07
2765 6903 0.179150 TGCACTGGTGTCAAAAACGC 60.179 50.000 2.64 0.00 37.67 4.84
2766 6904 1.132262 ACTGCACTGGTGTCAAAAACG 59.868 47.619 2.64 0.00 0.00 3.60
2767 6905 2.094752 ACACTGCACTGGTGTCAAAAAC 60.095 45.455 4.49 0.00 43.35 2.43
2768 6906 2.166829 ACACTGCACTGGTGTCAAAAA 58.833 42.857 4.49 0.00 43.35 1.94
2769 6907 1.832883 ACACTGCACTGGTGTCAAAA 58.167 45.000 4.49 0.00 43.35 2.44
2770 6908 2.700722 TACACTGCACTGGTGTCAAA 57.299 45.000 12.94 0.00 45.23 2.69
2771 6909 2.700722 TTACACTGCACTGGTGTCAA 57.299 45.000 12.94 5.00 45.23 3.18
2772 6910 2.700722 TTTACACTGCACTGGTGTCA 57.299 45.000 12.94 0.85 45.23 3.58
2790 6928 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2791 6929 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2792 6930 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2793 6931 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2794 6932 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2795 6933 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2796 6934 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2797 6935 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2798 6936 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2799 6937 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2800 6938 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2801 6939 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2802 6940 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2803 6941 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2804 6942 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2805 6943 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2806 6944 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2807 6945 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2808 6946 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2809 6947 2.030371 CTTAAGTACTCCCTCCGTCCC 58.970 57.143 0.00 0.00 0.00 4.46
2810 6948 2.687425 GACTTAAGTACTCCCTCCGTCC 59.313 54.545 8.42 0.00 0.00 4.79
2811 6949 3.350833 TGACTTAAGTACTCCCTCCGTC 58.649 50.000 8.42 0.00 0.00 4.79
2812 6950 3.245193 ACTGACTTAAGTACTCCCTCCGT 60.245 47.826 8.42 0.00 0.00 4.69
2813 6951 3.354467 ACTGACTTAAGTACTCCCTCCG 58.646 50.000 8.42 0.00 0.00 4.63
2814 6952 7.421087 AAATACTGACTTAAGTACTCCCTCC 57.579 40.000 8.42 0.00 35.53 4.30
2815 6953 8.312564 ACAAAATACTGACTTAAGTACTCCCTC 58.687 37.037 8.42 0.00 35.53 4.30
2816 6954 8.203681 ACAAAATACTGACTTAAGTACTCCCT 57.796 34.615 8.42 0.00 35.53 4.20
2817 6955 8.312564 AGACAAAATACTGACTTAAGTACTCCC 58.687 37.037 8.42 0.00 35.53 4.30
2818 6956 9.708092 AAGACAAAATACTGACTTAAGTACTCC 57.292 33.333 8.42 0.00 35.53 3.85
2820 6958 9.490379 CCAAGACAAAATACTGACTTAAGTACT 57.510 33.333 8.42 0.00 35.53 2.73
2821 6959 9.485206 TCCAAGACAAAATACTGACTTAAGTAC 57.515 33.333 8.42 3.26 35.53 2.73
2925 7063 8.367911 CCATACCACTCTACTAAATAGCAATGA 58.632 37.037 0.00 0.00 0.00 2.57
2940 7078 7.039993 GGTTTCACAATTTAACCATACCACTCT 60.040 37.037 0.00 0.00 40.77 3.24
2941 7079 7.088272 GGTTTCACAATTTAACCATACCACTC 58.912 38.462 0.00 0.00 40.77 3.51
2956 7094 5.205056 TCAAGGTAAGGTTGGTTTCACAAT 58.795 37.500 0.00 0.00 32.24 2.71
2999 7137 7.523415 AGGGAGTAACTGAAATGGAAGTAAAA 58.477 34.615 0.00 0.00 0.00 1.52
3007 7145 2.236395 ACGGAGGGAGTAACTGAAATGG 59.764 50.000 0.00 0.00 0.00 3.16
3027 7165 7.081349 TCAAATCACGACAACAATTATGGAAC 58.919 34.615 0.00 0.00 0.00 3.62
3038 7176 4.266739 GGTTTTGGTTCAAATCACGACAAC 59.733 41.667 0.00 0.00 33.19 3.32
3043 7181 2.786578 CGTGGTTTTGGTTCAAATCACG 59.213 45.455 21.91 21.91 44.87 4.35
3045 7183 3.444034 TGTCGTGGTTTTGGTTCAAATCA 59.556 39.130 0.00 0.00 33.19 2.57
3046 7184 4.035278 TGTCGTGGTTTTGGTTCAAATC 57.965 40.909 0.00 0.00 33.19 2.17
3047 7185 4.457834 TTGTCGTGGTTTTGGTTCAAAT 57.542 36.364 0.00 0.00 33.19 2.32
3048 7186 3.936372 TTGTCGTGGTTTTGGTTCAAA 57.064 38.095 0.00 0.00 0.00 2.69
3049 7187 5.578005 TTATTGTCGTGGTTTTGGTTCAA 57.422 34.783 0.00 0.00 0.00 2.69
3050 7188 5.776173 ATTATTGTCGTGGTTTTGGTTCA 57.224 34.783 0.00 0.00 0.00 3.18
3051 7189 7.274686 CCATAATTATTGTCGTGGTTTTGGTTC 59.725 37.037 0.00 0.00 0.00 3.62
3052 7190 7.039644 TCCATAATTATTGTCGTGGTTTTGGTT 60.040 33.333 0.00 0.00 0.00 3.67
3053 7191 6.434652 TCCATAATTATTGTCGTGGTTTTGGT 59.565 34.615 0.00 0.00 0.00 3.67
3054 7192 6.857956 TCCATAATTATTGTCGTGGTTTTGG 58.142 36.000 0.00 0.00 0.00 3.28
3055 7193 7.007905 CGTTCCATAATTATTGTCGTGGTTTTG 59.992 37.037 0.00 0.00 0.00 2.44
3056 7194 7.024768 CGTTCCATAATTATTGTCGTGGTTTT 58.975 34.615 0.00 0.00 0.00 2.43
3057 7195 6.403855 CCGTTCCATAATTATTGTCGTGGTTT 60.404 38.462 0.00 0.00 0.00 3.27
3058 7196 5.065474 CCGTTCCATAATTATTGTCGTGGTT 59.935 40.000 0.00 0.00 0.00 3.67
3059 7197 4.573201 CCGTTCCATAATTATTGTCGTGGT 59.427 41.667 0.00 0.00 0.00 4.16
3060 7198 4.812091 TCCGTTCCATAATTATTGTCGTGG 59.188 41.667 0.00 0.00 0.00 4.94
3061 7199 5.050363 CCTCCGTTCCATAATTATTGTCGTG 60.050 44.000 0.00 0.00 0.00 4.35
3062 7200 5.054477 CCTCCGTTCCATAATTATTGTCGT 58.946 41.667 0.00 0.00 0.00 4.34
3063 7201 4.451096 CCCTCCGTTCCATAATTATTGTCG 59.549 45.833 0.00 3.30 0.00 4.35
3064 7202 5.617252 TCCCTCCGTTCCATAATTATTGTC 58.383 41.667 0.00 0.00 0.00 3.18
3065 7203 5.132144 ACTCCCTCCGTTCCATAATTATTGT 59.868 40.000 0.00 0.00 0.00 2.71
3066 7204 5.621193 ACTCCCTCCGTTCCATAATTATTG 58.379 41.667 0.00 0.00 0.00 1.90
3067 7205 5.906772 ACTCCCTCCGTTCCATAATTATT 57.093 39.130 0.00 0.00 0.00 1.40
3068 7206 6.082707 ACTACTCCCTCCGTTCCATAATTAT 58.917 40.000 0.00 0.00 0.00 1.28
3069 7207 5.461327 ACTACTCCCTCCGTTCCATAATTA 58.539 41.667 0.00 0.00 0.00 1.40
3070 7208 4.296056 ACTACTCCCTCCGTTCCATAATT 58.704 43.478 0.00 0.00 0.00 1.40
3071 7209 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
3072 7210 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
3073 7211 4.524802 TTACTACTCCCTCCGTTCCATA 57.475 45.455 0.00 0.00 0.00 2.74
3074 7212 3.393426 TTACTACTCCCTCCGTTCCAT 57.607 47.619 0.00 0.00 0.00 3.41
3079 7217 7.068061 AGAAATAGAATTACTACTCCCTCCGT 58.932 38.462 0.00 0.00 33.62 4.69
3107 7260 9.244978 AGGTGATTAATTTATTCCCTAAGGGTA 57.755 33.333 0.00 0.00 44.74 3.69
3157 7310 9.813826 ATGAGATAAAGGAAAAGAAAGGAAGAA 57.186 29.630 0.00 0.00 0.00 2.52
3172 7325 6.420008 GCAAGCTGCATTAAATGAGATAAAGG 59.580 38.462 1.02 0.00 44.26 3.11
3261 7414 8.863872 AACTGTATTGTTTAGGTAAAGCTGAT 57.136 30.769 0.00 0.00 0.00 2.90
3501 7655 3.635373 CCAGCCATTCTGCTTACATGAAT 59.365 43.478 0.00 0.00 40.32 2.57
3567 7730 1.339727 ACGATTGTCCCACCTAAAGGC 60.340 52.381 0.00 0.00 39.32 4.35
3710 7875 4.346127 ACAGCTGATACCTGCATCATAAGA 59.654 41.667 23.35 0.00 39.38 2.10
3803 7977 7.739825 ACAATAGGAGCTTGATATACACATGT 58.260 34.615 0.00 0.00 0.00 3.21
3842 8019 0.837691 ACACATGGAGCCTGGAGACA 60.838 55.000 0.00 0.00 39.59 3.41
3890 8070 5.780984 AGTTTAAAACAGTACCCTCTCTCG 58.219 41.667 0.00 0.00 0.00 4.04
3954 8338 9.507329 AATGCGTTATACTGAATAATGGAGATT 57.493 29.630 0.00 0.00 39.76 2.40
4110 8512 5.812642 GCATATACGATTCCCAATGGTAGAG 59.187 44.000 0.00 0.00 35.90 2.43
4268 8684 8.927411 TCATGAGAAATGTGGAGAGTTCATATA 58.073 33.333 0.00 0.00 0.00 0.86
4269 8685 7.799081 TCATGAGAAATGTGGAGAGTTCATAT 58.201 34.615 0.00 0.00 0.00 1.78
4280 8696 5.954296 ACTGTTCTTCATGAGAAATGTGG 57.046 39.130 8.55 2.88 45.59 4.17
4342 8773 7.552687 TGAAAGACACTTTGTGAACAGATAACT 59.447 33.333 4.61 0.00 36.96 2.24
4344 8775 7.768582 TCTGAAAGACACTTTGTGAACAGATAA 59.231 33.333 4.61 0.00 38.67 1.75
4382 8820 5.176774 TGCTGAGTGTTAACTGACAAATACG 59.823 40.000 7.22 0.00 36.52 3.06
4541 9083 2.358737 CACTCACAGGCCCCGTTC 60.359 66.667 0.00 0.00 0.00 3.95
4551 9093 4.325972 TGCAGCTATTCATTTCACTCACA 58.674 39.130 0.00 0.00 0.00 3.58
4592 9134 5.762218 CCTAGCTTGCAATATCCCATATAGC 59.238 44.000 0.00 0.00 0.00 2.97
4645 9191 8.178313 CCTAGTGACATGTCATACGATACTATG 58.822 40.741 30.10 16.80 42.18 2.23
4649 9195 6.555812 TCCTAGTGACATGTCATACGATAC 57.444 41.667 30.10 15.85 42.18 2.24
4650 9196 8.101419 AGTATCCTAGTGACATGTCATACGATA 58.899 37.037 30.10 24.75 42.18 2.92
4694 9279 3.036084 GTGAGCCGTCACCGTGTG 61.036 66.667 0.00 0.00 46.58 3.82
4717 9302 7.706607 CAGTGGATTAGTAATTCGTCAGAATCA 59.293 37.037 0.00 0.00 45.66 2.57
4724 9309 5.927115 GGATCCAGTGGATTAGTAATTCGTC 59.073 44.000 25.55 9.09 43.27 4.20
4735 9320 4.560739 TGTCTAGATGGATCCAGTGGATT 58.439 43.478 25.55 10.40 43.27 3.01
4754 9339 7.380602 GCCACTGCATTGATATTTTAGAATGTC 59.619 37.037 5.49 0.00 37.47 3.06
4769 9354 8.340321 ATGTTGATACATCTGCCACTGCATTG 62.340 42.308 0.00 0.00 40.94 2.82
4770 9355 6.386211 ATGTTGATACATCTGCCACTGCATT 61.386 40.000 0.00 0.00 40.94 3.56
4771 9356 4.930200 ATGTTGATACATCTGCCACTGCAT 60.930 41.667 0.00 0.00 40.94 3.96
4772 9357 3.622953 ATGTTGATACATCTGCCACTGCA 60.623 43.478 0.00 0.00 42.59 4.41
4773 9358 2.358957 TGTTGATACATCTGCCACTGC 58.641 47.619 0.00 0.00 38.26 4.40
4774 9359 6.347160 CGAATATGTTGATACATCTGCCACTG 60.347 42.308 0.00 0.00 43.81 3.66
4775 9360 5.698089 CGAATATGTTGATACATCTGCCACT 59.302 40.000 0.00 0.00 43.81 4.00
4776 9361 5.696270 TCGAATATGTTGATACATCTGCCAC 59.304 40.000 0.00 0.00 43.81 5.01
4777 9362 5.852827 TCGAATATGTTGATACATCTGCCA 58.147 37.500 0.00 0.00 43.81 4.92
4778 9363 5.928839 ACTCGAATATGTTGATACATCTGCC 59.071 40.000 0.00 0.00 43.81 4.85
4779 9364 6.642540 TGACTCGAATATGTTGATACATCTGC 59.357 38.462 0.00 0.00 43.81 4.26
4780 9365 7.149063 CGTGACTCGAATATGTTGATACATCTG 60.149 40.741 0.00 0.00 42.02 2.90
4781 9366 6.858478 CGTGACTCGAATATGTTGATACATCT 59.142 38.462 0.00 0.00 42.02 2.90
4782 9367 6.856426 TCGTGACTCGAATATGTTGATACATC 59.144 38.462 0.00 0.00 45.98 3.06
4783 9368 6.735130 TCGTGACTCGAATATGTTGATACAT 58.265 36.000 0.00 0.00 45.98 2.29
4784 9369 6.126568 TCGTGACTCGAATATGTTGATACA 57.873 37.500 0.00 0.00 45.98 2.29
4841 9426 2.863401 ACTTTGAAAACCGTTCTGGC 57.137 45.000 0.00 0.00 43.94 4.85
4968 9556 7.136885 TGTTCCTTTGGACTTCTCCCTATATA 58.863 38.462 0.00 0.00 35.34 0.86
4969 9557 5.970640 TGTTCCTTTGGACTTCTCCCTATAT 59.029 40.000 0.00 0.00 35.34 0.86
5027 9616 2.887783 CCGACTCTGTAGGTGATGCTAT 59.112 50.000 0.00 0.00 0.00 2.97
5047 9636 1.423794 TTTGGAGGTGGACCAGGACC 61.424 60.000 0.04 0.04 38.70 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.