Multiple sequence alignment - TraesCS1A01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G281200 chr1A 100.000 3614 0 0 1 3614 479714386 479710773 0.000000e+00 6674.0
1 TraesCS1A01G281200 chr1A 86.895 496 62 3 1 494 99894730 99895224 1.470000e-153 553.0
2 TraesCS1A01G281200 chr1A 87.500 264 23 3 1180 1442 278371688 278371942 2.730000e-76 296.0
3 TraesCS1A01G281200 chr1D 93.863 2151 81 17 502 2644 378873273 378871166 0.000000e+00 3193.0
4 TraesCS1A01G281200 chr1D 91.742 993 46 10 2656 3614 378869856 378868866 0.000000e+00 1347.0
5 TraesCS1A01G281200 chr1D 88.679 265 20 3 1179 1442 405003982 405003727 7.530000e-82 315.0
6 TraesCS1A01G281200 chr1B 92.787 2149 87 31 503 2644 507546249 507544162 0.000000e+00 3048.0
7 TraesCS1A01G281200 chr1B 93.299 985 37 9 2656 3614 507473516 507472535 0.000000e+00 1426.0
8 TraesCS1A01G281200 chr1B 92.424 66 4 1 1840 1905 90190547 90190611 3.840000e-15 93.5
9 TraesCS1A01G281200 chr7A 95.152 495 23 1 1 494 650534025 650533531 0.000000e+00 780.0
10 TraesCS1A01G281200 chr7B 91.441 479 35 5 1 476 111977642 111978117 0.000000e+00 652.0
11 TraesCS1A01G281200 chr6B 89.579 499 45 2 1 492 286768575 286769073 8.520000e-176 627.0
12 TraesCS1A01G281200 chr5A 89.813 481 35 9 1 473 324398768 324398294 3.990000e-169 604.0
13 TraesCS1A01G281200 chr5A 88.521 453 50 2 1 452 319150040 319150491 6.820000e-152 547.0
14 TraesCS1A01G281200 chr5A 88.472 373 33 4 3249 3614 491313179 491313548 3.310000e-120 442.0
15 TraesCS1A01G281200 chr5A 87.054 224 11 9 2873 3079 491295551 491295329 1.680000e-58 237.0
16 TraesCS1A01G281200 chr5A 89.474 171 11 1 2656 2819 491295748 491295578 3.660000e-50 209.0
17 TraesCS1A01G281200 chr6D 88.485 495 55 2 1 494 181704134 181703641 6.680000e-167 597.0
18 TraesCS1A01G281200 chr6D 93.750 64 3 1 1840 1903 450191530 450191592 1.070000e-15 95.3
19 TraesCS1A01G281200 chr5D 88.283 495 56 2 1 494 307494591 307495084 3.110000e-165 592.0
20 TraesCS1A01G281200 chr5D 84.787 447 27 11 2656 3079 388103802 388103374 9.340000e-111 411.0
21 TraesCS1A01G281200 chr5D 87.658 316 29 6 3242 3549 388423930 388424243 3.430000e-95 359.0
22 TraesCS1A01G281200 chr5D 94.118 68 4 0 3545 3612 388426200 388426267 1.770000e-18 104.0
23 TraesCS1A01G281200 chr2D 88.283 495 56 2 1 494 378753757 378754250 3.110000e-165 592.0
24 TraesCS1A01G281200 chr2D 84.783 368 50 6 1515 1878 191052819 191053184 7.370000e-97 364.0
25 TraesCS1A01G281200 chr5B 87.887 388 30 11 3242 3614 466968126 466968511 1.190000e-119 440.0
26 TraesCS1A01G281200 chr5B 87.371 388 32 6 3242 3614 466949479 466949864 2.580000e-116 429.0
27 TraesCS1A01G281200 chr5B 83.149 451 27 11 2656 3079 466781172 466780744 2.050000e-97 366.0
28 TraesCS1A01G281200 chr4B 87.843 255 22 3 1188 1442 616747501 616747256 1.270000e-74 291.0
29 TraesCS1A01G281200 chr4B 90.110 91 7 2 3116 3205 15843246 15843157 2.280000e-22 117.0
30 TraesCS1A01G281200 chr4B 86.275 102 9 4 3116 3216 338405012 338405109 4.940000e-19 106.0
31 TraesCS1A01G281200 chr4B 87.368 95 8 4 3116 3208 410246475 410246567 4.940000e-19 106.0
32 TraesCS1A01G281200 chr3B 84.921 126 15 3 3116 3240 737411205 737411327 1.360000e-24 124.0
33 TraesCS1A01G281200 chr4D 95.312 64 2 1 1840 1903 191275457 191275395 2.300000e-17 100.0
34 TraesCS1A01G281200 chr3A 95.312 64 2 1 1840 1903 1738053 1737991 2.300000e-17 100.0
35 TraesCS1A01G281200 chr7D 93.750 64 3 1 1840 1903 98775875 98775937 1.070000e-15 95.3
36 TraesCS1A01G281200 chr7D 81.651 109 17 3 3139 3244 620147174 620147066 1.790000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G281200 chr1A 479710773 479714386 3613 True 6674.0 6674 100.0000 1 3614 1 chr1A.!!$R1 3613
1 TraesCS1A01G281200 chr1D 378868866 378873273 4407 True 2270.0 3193 92.8025 502 3614 2 chr1D.!!$R2 3112
2 TraesCS1A01G281200 chr1B 507544162 507546249 2087 True 3048.0 3048 92.7870 503 2644 1 chr1B.!!$R2 2141
3 TraesCS1A01G281200 chr1B 507472535 507473516 981 True 1426.0 1426 93.2990 2656 3614 1 chr1B.!!$R1 958
4 TraesCS1A01G281200 chr5D 388423930 388426267 2337 False 231.5 359 90.8880 3242 3612 2 chr5D.!!$F2 370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.103026 CGAGGATGCGGAAGATCACA 59.897 55.0 0.00 0.0 0.00 3.58 F
398 399 0.107017 ATTGATCGCCCACCCAGAAG 60.107 55.0 0.00 0.0 0.00 2.85 F
411 412 0.460987 CCAGAAGGTAGGCGCAAGAG 60.461 60.0 10.83 0.0 43.02 2.85 F
442 443 0.526211 GCAAGGGAGCCGTAAAAAGG 59.474 55.0 0.00 0.0 0.00 3.11 F
1988 1999 0.389426 GAAGCGGTCGAACAAGGCTA 60.389 55.0 0.00 0.0 32.82 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1391 0.613292 GCAGAGTGGACAGAGAGGGA 60.613 60.000 0.00 0.00 0.00 4.20 R
1451 1462 1.011904 CAAGACATCAATCCGCGCG 60.012 57.895 25.67 25.67 0.00 6.86 R
1966 1977 1.493311 CTTGTTCGACCGCTTCTGC 59.507 57.895 0.00 0.00 0.00 4.26 R
2433 2444 2.032549 CAGAGTTTCTCTTTGTGGCACG 60.033 50.000 13.77 0.00 38.99 5.34 R
3182 4523 0.901827 TATTGCTTGAGCCTCGTGGA 59.098 50.000 7.92 0.00 41.18 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.854522 GAACTGATTCGGGTGGGTG 58.145 57.895 0.00 0.00 0.00 4.61
27 28 0.323629 GAACTGATTCGGGTGGGTGA 59.676 55.000 0.00 0.00 0.00 4.02
28 29 0.991920 AACTGATTCGGGTGGGTGAT 59.008 50.000 0.00 0.00 0.00 3.06
29 30 0.253044 ACTGATTCGGGTGGGTGATG 59.747 55.000 0.00 0.00 0.00 3.07
30 31 1.077787 TGATTCGGGTGGGTGATGC 60.078 57.895 0.00 0.00 0.00 3.91
31 32 2.124736 ATTCGGGTGGGTGATGCG 60.125 61.111 0.00 0.00 0.00 4.73
32 33 3.697439 ATTCGGGTGGGTGATGCGG 62.697 63.158 0.00 0.00 0.00 5.69
35 36 4.028490 GGGTGGGTGATGCGGTCA 62.028 66.667 0.00 0.00 0.00 4.02
36 37 2.436646 GGTGGGTGATGCGGTCAG 60.437 66.667 0.00 0.00 37.56 3.51
63 64 4.870190 CCACCCTATTGGCGTACC 57.130 61.111 0.00 0.00 37.83 3.34
64 65 1.147600 CCACCCTATTGGCGTACCC 59.852 63.158 0.00 0.00 37.83 3.69
65 66 1.147600 CACCCTATTGGCGTACCCC 59.852 63.158 0.00 0.00 37.83 4.95
66 67 1.003835 ACCCTATTGGCGTACCCCT 59.996 57.895 0.00 0.00 37.83 4.79
67 68 0.622446 ACCCTATTGGCGTACCCCTT 60.622 55.000 0.00 0.00 37.83 3.95
68 69 0.549469 CCCTATTGGCGTACCCCTTT 59.451 55.000 0.00 0.00 33.59 3.11
69 70 1.675552 CCTATTGGCGTACCCCTTTG 58.324 55.000 0.00 0.00 33.59 2.77
70 71 1.021968 CTATTGGCGTACCCCTTTGC 58.978 55.000 0.00 0.00 33.59 3.68
71 72 0.745128 TATTGGCGTACCCCTTTGCG 60.745 55.000 0.00 0.00 33.59 4.85
72 73 2.472414 ATTGGCGTACCCCTTTGCGA 62.472 55.000 0.00 0.00 33.59 5.10
73 74 2.818274 GGCGTACCCCTTTGCGAG 60.818 66.667 0.00 0.00 0.00 5.03
74 75 2.818274 GCGTACCCCTTTGCGAGG 60.818 66.667 0.00 0.00 45.86 4.63
82 83 3.889227 CTTTGCGAGGATGCGGAA 58.111 55.556 0.00 0.00 39.81 4.30
83 84 1.717937 CTTTGCGAGGATGCGGAAG 59.282 57.895 0.00 0.00 42.33 3.46
84 85 0.740868 CTTTGCGAGGATGCGGAAGA 60.741 55.000 0.00 0.00 42.33 2.87
85 86 0.107703 TTTGCGAGGATGCGGAAGAT 60.108 50.000 0.00 0.00 42.33 2.40
86 87 0.530650 TTGCGAGGATGCGGAAGATC 60.531 55.000 0.00 0.00 36.69 2.75
87 88 1.068083 GCGAGGATGCGGAAGATCA 59.932 57.895 0.00 0.00 0.00 2.92
88 89 1.218230 GCGAGGATGCGGAAGATCAC 61.218 60.000 0.00 0.00 0.00 3.06
89 90 0.103026 CGAGGATGCGGAAGATCACA 59.897 55.000 0.00 0.00 0.00 3.58
90 91 1.269988 CGAGGATGCGGAAGATCACAT 60.270 52.381 0.00 0.00 0.00 3.21
91 92 2.804572 CGAGGATGCGGAAGATCACATT 60.805 50.000 0.00 0.00 0.00 2.71
92 93 2.547211 GAGGATGCGGAAGATCACATTG 59.453 50.000 0.00 0.00 0.00 2.82
93 94 2.171237 AGGATGCGGAAGATCACATTGA 59.829 45.455 0.00 0.00 0.00 2.57
94 95 3.144506 GGATGCGGAAGATCACATTGAT 58.855 45.455 0.00 0.00 40.34 2.57
108 109 2.682856 ACATTGATCACCGTAATGTGCC 59.317 45.455 8.78 0.00 41.85 5.01
109 110 1.364721 TTGATCACCGTAATGTGCCG 58.635 50.000 0.00 0.00 36.17 5.69
116 117 2.086510 CGTAATGTGCCGGAACTGG 58.913 57.895 15.35 0.00 0.00 4.00
123 124 2.746277 GCCGGAACTGGCGAATGT 60.746 61.111 5.05 0.00 46.75 2.71
124 125 2.750888 GCCGGAACTGGCGAATGTC 61.751 63.158 5.05 0.00 46.75 3.06
125 126 2.452813 CCGGAACTGGCGAATGTCG 61.453 63.158 0.00 0.00 43.89 4.35
126 127 2.452813 CGGAACTGGCGAATGTCGG 61.453 63.158 0.00 0.00 40.84 4.79
149 150 3.489513 CCCGGGACCTTGGGGATC 61.490 72.222 18.48 0.00 44.10 3.36
150 151 2.690881 CCGGGACCTTGGGGATCA 60.691 66.667 0.00 0.00 36.25 2.92
151 152 2.305607 CCGGGACCTTGGGGATCAA 61.306 63.158 0.00 0.00 36.25 2.57
165 166 4.635699 GGGATCAAGGTAATAATCCCGT 57.364 45.455 3.64 0.00 45.86 5.28
166 167 5.750352 GGGATCAAGGTAATAATCCCGTA 57.250 43.478 3.64 0.00 45.86 4.02
167 168 6.117975 GGGATCAAGGTAATAATCCCGTAA 57.882 41.667 3.64 0.00 45.86 3.18
168 169 6.718294 GGGATCAAGGTAATAATCCCGTAAT 58.282 40.000 3.64 0.00 45.86 1.89
169 170 7.173032 GGGATCAAGGTAATAATCCCGTAATT 58.827 38.462 3.64 0.00 45.86 1.40
170 171 8.323567 GGGATCAAGGTAATAATCCCGTAATTA 58.676 37.037 3.64 0.00 45.86 1.40
171 172 9.729281 GGATCAAGGTAATAATCCCGTAATTAA 57.271 33.333 0.00 0.00 33.06 1.40
174 175 9.768662 TCAAGGTAATAATCCCGTAATTAAGTC 57.231 33.333 0.00 0.00 0.00 3.01
175 176 8.706035 CAAGGTAATAATCCCGTAATTAAGTCG 58.294 37.037 0.00 0.00 0.00 4.18
176 177 7.381323 AGGTAATAATCCCGTAATTAAGTCGG 58.619 38.462 6.12 6.12 43.30 4.79
177 178 7.015584 AGGTAATAATCCCGTAATTAAGTCGGT 59.984 37.037 10.93 0.00 42.30 4.69
178 179 7.116805 GGTAATAATCCCGTAATTAAGTCGGTG 59.883 40.741 10.93 4.51 42.30 4.94
179 180 2.965572 TCCCGTAATTAAGTCGGTGG 57.034 50.000 10.93 0.00 42.30 4.61
180 181 2.455557 TCCCGTAATTAAGTCGGTGGA 58.544 47.619 10.93 1.91 42.30 4.02
181 182 2.428171 TCCCGTAATTAAGTCGGTGGAG 59.572 50.000 10.93 0.00 42.30 3.86
182 183 2.482490 CCCGTAATTAAGTCGGTGGAGG 60.482 54.545 10.93 0.00 42.30 4.30
183 184 2.167075 CCGTAATTAAGTCGGTGGAGGT 59.833 50.000 5.13 0.00 39.51 3.85
184 185 3.442100 CGTAATTAAGTCGGTGGAGGTC 58.558 50.000 0.00 0.00 0.00 3.85
185 186 3.119388 CGTAATTAAGTCGGTGGAGGTCA 60.119 47.826 0.00 0.00 0.00 4.02
186 187 4.618927 CGTAATTAAGTCGGTGGAGGTCAA 60.619 45.833 0.00 0.00 0.00 3.18
187 188 4.569719 AATTAAGTCGGTGGAGGTCAAT 57.430 40.909 0.00 0.00 0.00 2.57
188 189 3.328382 TTAAGTCGGTGGAGGTCAATG 57.672 47.619 0.00 0.00 0.00 2.82
189 190 1.056660 AAGTCGGTGGAGGTCAATGT 58.943 50.000 0.00 0.00 0.00 2.71
190 191 0.608640 AGTCGGTGGAGGTCAATGTC 59.391 55.000 0.00 0.00 0.00 3.06
191 192 0.736325 GTCGGTGGAGGTCAATGTCG 60.736 60.000 0.00 0.00 0.00 4.35
192 193 2.100631 CGGTGGAGGTCAATGTCGC 61.101 63.158 0.00 0.00 0.00 5.19
193 194 1.745489 GGTGGAGGTCAATGTCGCC 60.745 63.158 0.00 0.00 0.00 5.54
194 195 1.296715 GTGGAGGTCAATGTCGCCT 59.703 57.895 0.00 0.00 34.93 5.52
195 196 0.535335 GTGGAGGTCAATGTCGCCTA 59.465 55.000 0.00 0.00 31.89 3.93
196 197 0.535335 TGGAGGTCAATGTCGCCTAC 59.465 55.000 0.00 0.00 33.87 3.18
197 198 0.535335 GGAGGTCAATGTCGCCTACA 59.465 55.000 0.00 0.00 43.86 2.74
208 209 4.585955 TGTCGCCTACATAGAATTCCTC 57.414 45.455 0.65 0.00 31.43 3.71
209 210 3.958147 TGTCGCCTACATAGAATTCCTCA 59.042 43.478 0.65 0.00 31.43 3.86
210 211 4.404394 TGTCGCCTACATAGAATTCCTCAA 59.596 41.667 0.65 0.00 31.43 3.02
211 212 5.105106 TGTCGCCTACATAGAATTCCTCAAA 60.105 40.000 0.65 0.00 31.43 2.69
212 213 5.463724 GTCGCCTACATAGAATTCCTCAAAG 59.536 44.000 0.65 0.00 0.00 2.77
213 214 5.362717 TCGCCTACATAGAATTCCTCAAAGA 59.637 40.000 0.65 0.00 0.00 2.52
214 215 5.694006 CGCCTACATAGAATTCCTCAAAGAG 59.306 44.000 0.65 0.00 0.00 2.85
224 225 1.978454 CCTCAAAGAGGGCCATGATC 58.022 55.000 6.18 0.00 45.43 2.92
225 226 1.493871 CCTCAAAGAGGGCCATGATCT 59.506 52.381 6.18 0.00 45.43 2.75
226 227 2.486907 CCTCAAAGAGGGCCATGATCTC 60.487 54.545 6.18 0.58 45.43 2.75
227 228 1.492176 TCAAAGAGGGCCATGATCTCC 59.508 52.381 6.18 0.00 0.00 3.71
228 229 0.471617 AAAGAGGGCCATGATCTCCG 59.528 55.000 6.18 0.00 0.00 4.63
229 230 1.414061 AAGAGGGCCATGATCTCCGG 61.414 60.000 6.18 0.00 0.00 5.14
230 231 3.543536 GAGGGCCATGATCTCCGGC 62.544 68.421 6.18 10.96 45.47 6.13
231 232 3.564218 GGGCCATGATCTCCGGCT 61.564 66.667 4.39 0.00 45.50 5.52
232 233 2.512896 GGCCATGATCTCCGGCTT 59.487 61.111 16.71 0.00 45.50 4.35
233 234 1.895707 GGCCATGATCTCCGGCTTG 60.896 63.158 16.71 0.00 45.50 4.01
234 235 1.146930 GCCATGATCTCCGGCTTGA 59.853 57.895 11.84 0.00 42.78 3.02
235 236 0.250640 GCCATGATCTCCGGCTTGAT 60.251 55.000 11.84 0.00 42.78 2.57
236 237 1.002430 GCCATGATCTCCGGCTTGATA 59.998 52.381 11.84 0.00 42.78 2.15
237 238 2.934364 GCCATGATCTCCGGCTTGATAG 60.934 54.545 11.84 0.00 42.78 2.08
238 239 2.301296 CCATGATCTCCGGCTTGATAGT 59.699 50.000 0.00 0.00 0.00 2.12
239 240 3.324117 CATGATCTCCGGCTTGATAGTG 58.676 50.000 0.00 0.00 0.00 2.74
240 241 2.388735 TGATCTCCGGCTTGATAGTGT 58.611 47.619 0.00 0.00 0.00 3.55
241 242 2.101415 TGATCTCCGGCTTGATAGTGTG 59.899 50.000 0.00 0.00 0.00 3.82
242 243 0.175760 TCTCCGGCTTGATAGTGTGC 59.824 55.000 0.00 0.00 0.00 4.57
243 244 0.811616 CTCCGGCTTGATAGTGTGCC 60.812 60.000 0.00 0.00 41.76 5.01
244 245 1.078497 CCGGCTTGATAGTGTGCCA 60.078 57.895 0.00 0.00 45.13 4.92
245 246 0.676466 CCGGCTTGATAGTGTGCCAA 60.676 55.000 0.00 0.00 45.13 4.52
246 247 1.164411 CGGCTTGATAGTGTGCCAAA 58.836 50.000 0.00 0.00 45.13 3.28
247 248 1.539388 CGGCTTGATAGTGTGCCAAAA 59.461 47.619 0.00 0.00 45.13 2.44
248 249 2.414559 CGGCTTGATAGTGTGCCAAAAG 60.415 50.000 0.00 0.00 45.13 2.27
249 250 2.094545 GGCTTGATAGTGTGCCAAAAGG 60.095 50.000 0.00 0.00 44.34 3.11
250 251 2.558359 GCTTGATAGTGTGCCAAAAGGT 59.442 45.455 0.00 0.00 0.00 3.50
251 252 3.366374 GCTTGATAGTGTGCCAAAAGGTC 60.366 47.826 0.00 0.00 0.00 3.85
252 253 3.788227 TGATAGTGTGCCAAAAGGTCT 57.212 42.857 0.00 0.00 0.00 3.85
253 254 3.411446 TGATAGTGTGCCAAAAGGTCTG 58.589 45.455 0.00 0.00 0.00 3.51
254 255 3.072330 TGATAGTGTGCCAAAAGGTCTGA 59.928 43.478 0.00 0.00 0.00 3.27
255 256 2.435372 AGTGTGCCAAAAGGTCTGAA 57.565 45.000 0.00 0.00 0.00 3.02
256 257 2.733956 AGTGTGCCAAAAGGTCTGAAA 58.266 42.857 0.00 0.00 0.00 2.69
257 258 3.096092 AGTGTGCCAAAAGGTCTGAAAA 58.904 40.909 0.00 0.00 0.00 2.29
258 259 3.513515 AGTGTGCCAAAAGGTCTGAAAAA 59.486 39.130 0.00 0.00 0.00 1.94
278 279 6.648879 AAAAACTTAACTGGCAAGCTATCA 57.351 33.333 0.00 0.00 0.00 2.15
279 280 5.886960 AAACTTAACTGGCAAGCTATCAG 57.113 39.130 8.70 8.70 34.91 2.90
280 281 3.878778 ACTTAACTGGCAAGCTATCAGG 58.121 45.455 13.20 1.58 33.19 3.86
281 282 2.332063 TAACTGGCAAGCTATCAGGC 57.668 50.000 13.20 5.67 33.19 4.85
282 283 0.394899 AACTGGCAAGCTATCAGGCC 60.395 55.000 13.20 0.00 46.58 5.19
283 284 1.527844 CTGGCAAGCTATCAGGCCC 60.528 63.158 0.00 0.00 45.83 5.80
284 285 2.203408 GGCAAGCTATCAGGCCCC 60.203 66.667 0.00 0.00 40.55 5.80
285 286 2.592861 GCAAGCTATCAGGCCCCG 60.593 66.667 0.00 0.00 0.00 5.73
286 287 2.111878 CAAGCTATCAGGCCCCGG 59.888 66.667 0.00 0.00 0.00 5.73
287 288 3.171388 AAGCTATCAGGCCCCGGG 61.171 66.667 15.80 15.80 0.00 5.73
301 302 4.143333 CGGGGCGGATGTCGAGTT 62.143 66.667 0.00 0.00 42.43 3.01
302 303 2.202892 GGGGCGGATGTCGAGTTC 60.203 66.667 0.00 0.00 42.43 3.01
303 304 2.577059 GGGCGGATGTCGAGTTCA 59.423 61.111 0.00 0.00 42.43 3.18
304 305 1.144057 GGGCGGATGTCGAGTTCAT 59.856 57.895 0.00 0.00 42.43 2.57
305 306 1.154205 GGGCGGATGTCGAGTTCATG 61.154 60.000 0.00 0.00 42.43 3.07
306 307 1.638467 GCGGATGTCGAGTTCATGC 59.362 57.895 0.00 0.00 42.43 4.06
307 308 1.766143 GCGGATGTCGAGTTCATGCC 61.766 60.000 1.32 0.00 42.43 4.40
308 309 0.179100 CGGATGTCGAGTTCATGCCT 60.179 55.000 1.32 0.00 42.43 4.75
309 310 1.740380 CGGATGTCGAGTTCATGCCTT 60.740 52.381 1.32 0.00 42.43 4.35
310 311 2.359900 GGATGTCGAGTTCATGCCTTT 58.640 47.619 0.00 0.00 0.00 3.11
311 312 3.531538 GGATGTCGAGTTCATGCCTTTA 58.468 45.455 0.00 0.00 0.00 1.85
312 313 3.938963 GGATGTCGAGTTCATGCCTTTAA 59.061 43.478 0.00 0.00 0.00 1.52
313 314 4.576463 GGATGTCGAGTTCATGCCTTTAAT 59.424 41.667 0.00 0.00 0.00 1.40
314 315 5.277538 GGATGTCGAGTTCATGCCTTTAATC 60.278 44.000 0.00 0.00 0.00 1.75
315 316 3.616821 TGTCGAGTTCATGCCTTTAATCG 59.383 43.478 0.00 0.00 0.00 3.34
316 317 2.607635 TCGAGTTCATGCCTTTAATCGC 59.392 45.455 0.00 0.00 0.00 4.58
317 318 2.351418 CGAGTTCATGCCTTTAATCGCA 59.649 45.455 0.00 0.00 39.79 5.10
318 319 3.181511 CGAGTTCATGCCTTTAATCGCAA 60.182 43.478 1.53 0.00 38.75 4.85
319 320 4.346129 GAGTTCATGCCTTTAATCGCAAG 58.654 43.478 1.53 0.00 38.75 4.01
320 321 2.849880 TCATGCCTTTAATCGCAAGC 57.150 45.000 1.53 0.00 38.75 4.01
321 322 2.368439 TCATGCCTTTAATCGCAAGCT 58.632 42.857 1.53 0.00 38.75 3.74
322 323 3.540617 TCATGCCTTTAATCGCAAGCTA 58.459 40.909 1.53 0.00 38.75 3.32
323 324 3.944650 TCATGCCTTTAATCGCAAGCTAA 59.055 39.130 1.53 0.00 38.75 3.09
324 325 4.397730 TCATGCCTTTAATCGCAAGCTAAA 59.602 37.500 1.53 0.00 38.75 1.85
325 326 4.091453 TGCCTTTAATCGCAAGCTAAAC 57.909 40.909 0.00 0.00 37.18 2.01
326 327 3.756434 TGCCTTTAATCGCAAGCTAAACT 59.244 39.130 0.00 0.00 37.18 2.66
327 328 4.217550 TGCCTTTAATCGCAAGCTAAACTT 59.782 37.500 0.00 0.00 40.05 2.66
328 329 4.793731 GCCTTTAATCGCAAGCTAAACTTC 59.206 41.667 0.00 0.00 36.04 3.01
329 330 5.332707 CCTTTAATCGCAAGCTAAACTTCC 58.667 41.667 0.00 0.00 36.04 3.46
330 331 5.123979 CCTTTAATCGCAAGCTAAACTTCCT 59.876 40.000 0.00 0.00 36.04 3.36
331 332 6.349363 CCTTTAATCGCAAGCTAAACTTCCTT 60.349 38.462 0.00 0.00 36.04 3.36
332 333 4.686839 AATCGCAAGCTAAACTTCCTTC 57.313 40.909 0.00 0.00 36.04 3.46
333 334 3.402628 TCGCAAGCTAAACTTCCTTCT 57.597 42.857 0.00 0.00 36.04 2.85
334 335 3.326747 TCGCAAGCTAAACTTCCTTCTC 58.673 45.455 0.00 0.00 36.04 2.87
335 336 2.416893 CGCAAGCTAAACTTCCTTCTCC 59.583 50.000 0.00 0.00 36.04 3.71
336 337 2.416893 GCAAGCTAAACTTCCTTCTCCG 59.583 50.000 0.00 0.00 36.04 4.63
337 338 3.864921 GCAAGCTAAACTTCCTTCTCCGA 60.865 47.826 0.00 0.00 36.04 4.55
338 339 3.878160 AGCTAAACTTCCTTCTCCGAG 57.122 47.619 0.00 0.00 0.00 4.63
339 340 3.432378 AGCTAAACTTCCTTCTCCGAGA 58.568 45.455 0.00 0.00 0.00 4.04
340 341 3.833070 AGCTAAACTTCCTTCTCCGAGAA 59.167 43.478 10.44 10.44 32.50 2.87
341 342 3.927758 GCTAAACTTCCTTCTCCGAGAAC 59.072 47.826 6.75 0.00 29.89 3.01
342 343 2.726832 AACTTCCTTCTCCGAGAACG 57.273 50.000 6.75 3.97 39.43 3.95
364 365 4.208632 CGTGAGGGCCACATTCTC 57.791 61.111 7.00 1.36 45.98 2.87
365 366 1.450312 CGTGAGGGCCACATTCTCC 60.450 63.158 7.00 0.00 45.98 3.71
366 367 1.450312 GTGAGGGCCACATTCTCCG 60.450 63.158 7.00 0.00 45.03 4.63
367 368 2.514824 GAGGGCCACATTCTCCGC 60.515 66.667 6.18 0.00 0.00 5.54
368 369 3.011517 AGGGCCACATTCTCCGCT 61.012 61.111 6.18 0.00 0.00 5.52
369 370 2.044946 GGGCCACATTCTCCGCTT 60.045 61.111 4.39 0.00 0.00 4.68
370 371 2.115291 GGGCCACATTCTCCGCTTC 61.115 63.158 4.39 0.00 0.00 3.86
371 372 2.115291 GGCCACATTCTCCGCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
372 373 1.377202 GCCACATTCTCCGCTTCCA 60.377 57.895 0.00 0.00 0.00 3.53
373 374 0.960364 GCCACATTCTCCGCTTCCAA 60.960 55.000 0.00 0.00 0.00 3.53
374 375 0.804989 CCACATTCTCCGCTTCCAAC 59.195 55.000 0.00 0.00 0.00 3.77
375 376 1.522668 CACATTCTCCGCTTCCAACA 58.477 50.000 0.00 0.00 0.00 3.33
376 377 1.197721 CACATTCTCCGCTTCCAACAC 59.802 52.381 0.00 0.00 0.00 3.32
377 378 0.443869 CATTCTCCGCTTCCAACACG 59.556 55.000 0.00 0.00 0.00 4.49
378 379 1.298859 ATTCTCCGCTTCCAACACGC 61.299 55.000 0.00 0.00 0.00 5.34
379 380 2.652382 TTCTCCGCTTCCAACACGCA 62.652 55.000 0.00 0.00 0.00 5.24
380 381 2.031919 TCCGCTTCCAACACGCAT 59.968 55.556 0.00 0.00 0.00 4.73
381 382 1.577328 CTCCGCTTCCAACACGCATT 61.577 55.000 0.00 0.00 0.00 3.56
382 383 1.442520 CCGCTTCCAACACGCATTG 60.443 57.895 0.00 0.00 0.00 2.82
383 384 1.573932 CGCTTCCAACACGCATTGA 59.426 52.632 0.95 0.00 0.00 2.57
384 385 0.168788 CGCTTCCAACACGCATTGAT 59.831 50.000 0.95 0.00 0.00 2.57
385 386 1.791555 CGCTTCCAACACGCATTGATC 60.792 52.381 0.95 0.00 0.00 2.92
386 387 1.791555 GCTTCCAACACGCATTGATCG 60.792 52.381 0.95 0.00 0.00 3.69
387 388 0.167908 TTCCAACACGCATTGATCGC 59.832 50.000 0.95 0.00 0.00 4.58
388 389 1.226379 CCAACACGCATTGATCGCC 60.226 57.895 0.95 0.00 0.00 5.54
389 390 1.226379 CAACACGCATTGATCGCCC 60.226 57.895 0.00 0.00 0.00 6.13
390 391 1.673993 AACACGCATTGATCGCCCA 60.674 52.632 0.00 0.00 0.00 5.36
391 392 1.922135 AACACGCATTGATCGCCCAC 61.922 55.000 0.00 0.00 0.00 4.61
392 393 2.824041 ACGCATTGATCGCCCACC 60.824 61.111 0.00 0.00 0.00 4.61
393 394 3.585990 CGCATTGATCGCCCACCC 61.586 66.667 0.00 0.00 0.00 4.61
394 395 2.440065 GCATTGATCGCCCACCCA 60.440 61.111 0.00 0.00 0.00 4.51
395 396 2.484062 GCATTGATCGCCCACCCAG 61.484 63.158 0.00 0.00 0.00 4.45
396 397 1.224315 CATTGATCGCCCACCCAGA 59.776 57.895 0.00 0.00 0.00 3.86
397 398 0.394216 CATTGATCGCCCACCCAGAA 60.394 55.000 0.00 0.00 0.00 3.02
398 399 0.107017 ATTGATCGCCCACCCAGAAG 60.107 55.000 0.00 0.00 0.00 2.85
399 400 2.190578 GATCGCCCACCCAGAAGG 59.809 66.667 0.00 0.00 43.78 3.46
408 409 2.668632 CCCAGAAGGTAGGCGCAA 59.331 61.111 10.83 0.00 0.00 4.85
409 410 1.450312 CCCAGAAGGTAGGCGCAAG 60.450 63.158 10.83 0.00 43.44 4.01
410 411 1.596934 CCAGAAGGTAGGCGCAAGA 59.403 57.895 10.83 0.00 43.02 3.02
411 412 0.460987 CCAGAAGGTAGGCGCAAGAG 60.461 60.000 10.83 0.00 43.02 2.85
412 413 1.086634 CAGAAGGTAGGCGCAAGAGC 61.087 60.000 10.83 2.73 43.02 4.09
422 423 2.363406 GCAAGAGCCAAGCCCCAT 60.363 61.111 0.00 0.00 33.58 4.00
423 424 2.718073 GCAAGAGCCAAGCCCCATG 61.718 63.158 0.00 0.00 33.58 3.66
424 425 2.363406 AAGAGCCAAGCCCCATGC 60.363 61.111 0.00 0.00 41.71 4.06
425 426 3.228243 AAGAGCCAAGCCCCATGCA 62.228 57.895 0.00 0.00 44.83 3.96
426 427 2.681064 GAGCCAAGCCCCATGCAA 60.681 61.111 0.00 0.00 44.83 4.08
427 428 2.682494 AGCCAAGCCCCATGCAAG 60.682 61.111 0.00 0.00 44.83 4.01
428 429 3.777910 GCCAAGCCCCATGCAAGG 61.778 66.667 0.00 0.00 44.83 3.61
436 437 2.589540 CCATGCAAGGGAGCCGTA 59.410 61.111 0.00 0.00 43.46 4.02
437 438 1.077787 CCATGCAAGGGAGCCGTAA 60.078 57.895 0.00 0.00 43.46 3.18
438 439 0.679640 CCATGCAAGGGAGCCGTAAA 60.680 55.000 0.00 0.00 43.46 2.01
439 440 1.173043 CATGCAAGGGAGCCGTAAAA 58.827 50.000 0.00 0.00 0.00 1.52
440 441 1.543802 CATGCAAGGGAGCCGTAAAAA 59.456 47.619 0.00 0.00 0.00 1.94
441 442 1.243902 TGCAAGGGAGCCGTAAAAAG 58.756 50.000 0.00 0.00 0.00 2.27
442 443 0.526211 GCAAGGGAGCCGTAAAAAGG 59.474 55.000 0.00 0.00 0.00 3.11
443 444 1.173913 CAAGGGAGCCGTAAAAAGGG 58.826 55.000 0.00 0.00 0.00 3.95
454 455 6.880822 GCCGTAAAAAGGGCTTTATAAAAG 57.119 37.500 0.00 0.00 45.93 2.27
455 456 5.290158 GCCGTAAAAAGGGCTTTATAAAAGC 59.710 40.000 14.50 14.50 45.93 3.51
465 466 3.844099 GCTTTATAAAAGCCGTCAACACG 59.156 43.478 12.32 0.00 46.29 4.49
466 467 4.377635 GCTTTATAAAAGCCGTCAACACGA 60.378 41.667 12.32 0.00 46.34 4.35
467 468 6.169154 GCTTTATAAAAGCCGTCAACACGAG 61.169 44.000 12.32 0.00 46.34 4.18
474 475 3.470567 GTCAACACGAGCGCGGAG 61.471 66.667 15.86 8.95 43.17 4.63
475 476 3.973516 TCAACACGAGCGCGGAGT 61.974 61.111 15.86 9.66 43.17 3.85
476 477 3.036084 CAACACGAGCGCGGAGTT 61.036 61.111 15.86 15.31 43.17 3.01
477 478 2.733593 AACACGAGCGCGGAGTTC 60.734 61.111 15.86 0.00 43.17 3.01
488 489 4.681978 GGAGTTCGGCCACGTGCT 62.682 66.667 10.91 0.00 41.85 4.40
556 557 6.485313 TGGCATACTCGAAAGAAGAAGAAAAA 59.515 34.615 0.00 0.00 41.32 1.94
611 613 7.598493 CCAACCACATTATTTCCAACACTTTAG 59.402 37.037 0.00 0.00 0.00 1.85
613 615 7.882179 ACCACATTATTTCCAACACTTTAGTC 58.118 34.615 0.00 0.00 0.00 2.59
739 742 1.447317 CGGCCAGATTCCAATTCCCG 61.447 60.000 2.24 0.00 0.00 5.14
743 746 2.936202 CCAGATTCCAATTCCCGTCAT 58.064 47.619 0.00 0.00 0.00 3.06
767 771 5.241949 TGTGGCAAAATTTCCGTATTGTACT 59.758 36.000 0.00 0.00 0.00 2.73
768 772 6.430308 TGTGGCAAAATTTCCGTATTGTACTA 59.570 34.615 0.00 0.00 0.00 1.82
838 842 0.790814 GCTCAAGAAAGTTCCGTCCG 59.209 55.000 0.00 0.00 0.00 4.79
839 843 1.872653 GCTCAAGAAAGTTCCGTCCGT 60.873 52.381 0.00 0.00 0.00 4.69
840 844 2.059541 CTCAAGAAAGTTCCGTCCGTC 58.940 52.381 0.00 0.00 0.00 4.79
841 845 1.145803 CAAGAAAGTTCCGTCCGTCC 58.854 55.000 0.00 0.00 0.00 4.79
844 848 3.230522 AAAGTTCCGTCCGTCCCCG 62.231 63.158 0.00 0.00 0.00 5.73
876 880 3.213402 CCCGAGACTCCGAGAGCC 61.213 72.222 1.33 0.00 32.04 4.70
879 883 1.431440 CGAGACTCCGAGAGCCAAG 59.569 63.158 1.33 0.00 32.04 3.61
925 929 2.707849 CCGCAGGCGTAGTACCAGT 61.708 63.158 13.07 0.00 46.14 4.00
926 930 1.226603 CGCAGGCGTAGTACCAGTC 60.227 63.158 5.34 0.00 34.35 3.51
927 931 1.226603 GCAGGCGTAGTACCAGTCG 60.227 63.158 0.00 0.00 0.00 4.18
928 932 1.930908 GCAGGCGTAGTACCAGTCGT 61.931 60.000 0.00 0.00 0.00 4.34
956 960 2.563179 GTCTCTGCTCTCTACAAACCCA 59.437 50.000 0.00 0.00 0.00 4.51
970 977 3.790437 CCCACGCCTGCTCCTCAT 61.790 66.667 0.00 0.00 0.00 2.90
971 978 2.202987 CCACGCCTGCTCCTCATC 60.203 66.667 0.00 0.00 0.00 2.92
1150 1157 3.589288 AGGTAAGGAGCAAACAGGATCTT 59.411 43.478 0.00 0.00 0.00 2.40
1152 1159 3.515602 AAGGAGCAAACAGGATCTTGT 57.484 42.857 4.34 4.34 0.00 3.16
1155 1162 3.823304 AGGAGCAAACAGGATCTTGTTTC 59.177 43.478 27.54 21.68 45.49 2.78
1156 1163 3.365364 GGAGCAAACAGGATCTTGTTTCG 60.365 47.826 27.54 22.74 45.49 3.46
1157 1164 2.554032 AGCAAACAGGATCTTGTTTCGG 59.446 45.455 27.54 19.95 45.49 4.30
1212 1219 3.788933 TGATGGATTTGATGGGTTTGGT 58.211 40.909 0.00 0.00 0.00 3.67
1213 1220 4.166539 TGATGGATTTGATGGGTTTGGTT 58.833 39.130 0.00 0.00 0.00 3.67
1214 1221 4.020396 TGATGGATTTGATGGGTTTGGTTG 60.020 41.667 0.00 0.00 0.00 3.77
1215 1222 2.636893 TGGATTTGATGGGTTTGGTTGG 59.363 45.455 0.00 0.00 0.00 3.77
1219 1226 1.157513 GATGGGTTTGGTTGGGGGT 59.842 57.895 0.00 0.00 0.00 4.95
1380 1391 1.536943 GGAGACCGTCAGGCAAGTCT 61.537 60.000 0.40 0.00 42.15 3.24
1382 1393 1.079750 GACCGTCAGGCAAGTCTCC 60.080 63.158 0.00 0.00 42.76 3.71
1434 1445 1.153349 GGGTGGTTCGATCTCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
1483 1494 2.123982 CTTGGCAGGATGAGGGGC 60.124 66.667 0.00 0.00 39.69 5.80
1585 1596 3.492311 GATGCTCCTCGGCGAGACC 62.492 68.421 36.47 22.88 34.52 3.85
1667 1678 4.779733 AGACCCCGATGCCCGTCT 62.780 66.667 0.00 0.00 36.31 4.18
1822 1833 4.344865 TTCAAGCCCACCTCGCCC 62.345 66.667 0.00 0.00 0.00 6.13
1966 1977 2.966309 GCCGTCGGCCACAAAGAAG 61.966 63.158 26.23 0.00 44.06 2.85
1985 1996 1.901650 GCAGAAGCGGTCGAACAAGG 61.902 60.000 0.00 0.00 0.00 3.61
1988 1999 0.389426 GAAGCGGTCGAACAAGGCTA 60.389 55.000 0.00 0.00 32.82 3.93
2213 2224 0.461339 TTCACCGATAAAGGCGAGGC 60.461 55.000 0.00 0.00 33.69 4.70
2302 2313 1.153309 CGGCAGCATGATGAGTGGA 60.153 57.895 16.67 0.00 39.69 4.02
2475 2486 4.647611 TGAAACTGTACATGGGTTAGTGG 58.352 43.478 0.00 0.00 0.00 4.00
2507 2522 2.924926 TCCGTTACATTTCGTTGGATCG 59.075 45.455 0.00 0.00 0.00 3.69
2533 2548 5.355596 GGAGTACTTGATCTTGTCTGGATG 58.644 45.833 0.00 0.00 0.00 3.51
2644 2659 0.038166 GGTGGCCTGATGTTTCCTGA 59.962 55.000 3.32 0.00 0.00 3.86
2645 2660 1.457346 GTGGCCTGATGTTTCCTGAG 58.543 55.000 3.32 0.00 0.00 3.35
2646 2661 1.067295 TGGCCTGATGTTTCCTGAGT 58.933 50.000 3.32 0.00 0.00 3.41
2647 2662 1.425066 TGGCCTGATGTTTCCTGAGTT 59.575 47.619 3.32 0.00 0.00 3.01
2648 2663 1.815003 GGCCTGATGTTTCCTGAGTTG 59.185 52.381 0.00 0.00 0.00 3.16
2649 2664 1.815003 GCCTGATGTTTCCTGAGTTGG 59.185 52.381 0.00 0.00 0.00 3.77
2650 2665 2.440409 CCTGATGTTTCCTGAGTTGGG 58.560 52.381 0.00 0.00 0.00 4.12
2651 2666 1.815003 CTGATGTTTCCTGAGTTGGGC 59.185 52.381 0.00 0.00 0.00 5.36
2652 2667 1.144708 TGATGTTTCCTGAGTTGGGCA 59.855 47.619 0.00 0.00 0.00 5.36
2653 2668 1.815003 GATGTTTCCTGAGTTGGGCAG 59.185 52.381 0.00 0.00 0.00 4.85
2654 2669 0.823356 TGTTTCCTGAGTTGGGCAGC 60.823 55.000 0.00 0.00 32.06 5.25
2804 4124 2.925706 TACGGTTGCTGAGGGCCA 60.926 61.111 6.18 0.00 40.92 5.36
2840 4168 2.189594 CTGTGGGATTCAGCAACTCA 57.810 50.000 0.00 0.00 0.00 3.41
2862 4190 7.147266 ACTCATTAGGTTTATCCCCCGATTTTA 60.147 37.037 0.00 0.00 36.75 1.52
2883 4220 1.185618 TACTGCTCGTTCACTGCCCT 61.186 55.000 0.00 0.00 0.00 5.19
2956 4293 1.077716 ATTGTTGGCCCTCGGTAGC 60.078 57.895 0.00 0.00 0.00 3.58
2995 4332 5.163683 CCAAAGTTTGATCTGAGCATCGATT 60.164 40.000 17.33 0.00 38.61 3.34
2996 4333 5.731599 AAGTTTGATCTGAGCATCGATTC 57.268 39.130 0.00 0.00 38.61 2.52
2998 4335 4.125703 GTTTGATCTGAGCATCGATTCCT 58.874 43.478 0.00 0.00 38.61 3.36
2999 4336 3.382048 TGATCTGAGCATCGATTCCTG 57.618 47.619 0.00 0.00 38.61 3.86
3001 4338 1.780503 TCTGAGCATCGATTCCTGGA 58.219 50.000 0.00 0.00 38.61 3.86
3002 4339 2.323599 TCTGAGCATCGATTCCTGGAT 58.676 47.619 0.00 0.00 38.61 3.41
3021 4362 4.580167 TGGATTGTATACTGCAAAGATGGC 59.420 41.667 4.17 0.00 0.00 4.40
3025 4366 2.814805 ATACTGCAAAGATGGCCACT 57.185 45.000 8.16 4.50 0.00 4.00
3091 4432 5.310451 TGTGGTAAAAGTTGATCCTGTACC 58.690 41.667 0.00 0.00 31.26 3.34
3095 4436 4.741928 AAAAGTTGATCCTGTACCCCTT 57.258 40.909 0.00 0.00 0.00 3.95
3096 4437 4.741928 AAAGTTGATCCTGTACCCCTTT 57.258 40.909 0.00 0.00 0.00 3.11
3138 4479 9.402320 TGAGATAGACTAGGATATATGTTCTGC 57.598 37.037 0.00 0.00 0.00 4.26
3163 4504 5.707242 TGTCTTGTACTCGAAGTTGATCT 57.293 39.130 0.00 0.00 0.00 2.75
3171 4512 5.968528 ACTCGAAGTTGATCTTGTACTCT 57.031 39.130 0.00 0.00 36.40 3.24
3212 4553 6.746120 AGGCTCAAGCAATAAATCAATGATC 58.254 36.000 4.13 0.00 44.36 2.92
3219 4560 5.303589 AGCAATAAATCAATGATCCCACCAG 59.696 40.000 0.00 0.00 0.00 4.00
3231 4572 1.553248 TCCCACCAGTCCTTTATGTCG 59.447 52.381 0.00 0.00 0.00 4.35
3240 4581 4.265556 CAGTCCTTTATGTCGCTTCTAACG 59.734 45.833 0.00 0.00 0.00 3.18
3245 4586 5.005107 CCTTTATGTCGCTTCTAACGGTAAC 59.995 44.000 0.00 0.00 0.00 2.50
3268 4609 0.927537 TCGCAGTTTATCAATCGGCG 59.072 50.000 0.00 0.00 43.88 6.46
3386 4734 2.808919 TGGTGAGAGAAGGGAGTACAG 58.191 52.381 0.00 0.00 0.00 2.74
3387 4735 2.378886 TGGTGAGAGAAGGGAGTACAGA 59.621 50.000 0.00 0.00 0.00 3.41
3440 4788 3.647771 GGCCAACGGAGAAGGGGT 61.648 66.667 0.00 0.00 0.00 4.95
3515 4864 0.494095 ACCTCAACCCCTTCCTCTCT 59.506 55.000 0.00 0.00 0.00 3.10
3522 4871 1.984570 CCCTTCCTCTCTGGACGCA 60.985 63.158 0.00 0.00 46.14 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.323629 TCACCCACCCGAATCAGTTC 59.676 55.000 0.00 0.00 0.00 3.01
9 10 0.991920 ATCACCCACCCGAATCAGTT 59.008 50.000 0.00 0.00 0.00 3.16
10 11 0.253044 CATCACCCACCCGAATCAGT 59.747 55.000 0.00 0.00 0.00 3.41
11 12 1.097547 GCATCACCCACCCGAATCAG 61.098 60.000 0.00 0.00 0.00 2.90
12 13 1.077787 GCATCACCCACCCGAATCA 60.078 57.895 0.00 0.00 0.00 2.57
13 14 2.180204 CGCATCACCCACCCGAATC 61.180 63.158 0.00 0.00 0.00 2.52
14 15 2.124736 CGCATCACCCACCCGAAT 60.125 61.111 0.00 0.00 0.00 3.34
15 16 4.402528 CCGCATCACCCACCCGAA 62.403 66.667 0.00 0.00 0.00 4.30
18 19 3.976701 CTGACCGCATCACCCACCC 62.977 68.421 0.00 0.00 32.37 4.61
19 20 2.436646 CTGACCGCATCACCCACC 60.437 66.667 0.00 0.00 32.37 4.61
20 21 3.127533 GCTGACCGCATCACCCAC 61.128 66.667 0.00 0.00 38.92 4.61
21 22 4.408821 GGCTGACCGCATCACCCA 62.409 66.667 0.00 0.00 41.67 4.51
22 23 3.918253 TTGGCTGACCGCATCACCC 62.918 63.158 0.00 0.00 41.67 4.61
23 24 1.926511 CTTTGGCTGACCGCATCACC 61.927 60.000 0.00 0.00 41.67 4.02
24 25 1.503542 CTTTGGCTGACCGCATCAC 59.496 57.895 0.00 0.00 41.67 3.06
25 26 1.675310 CCTTTGGCTGACCGCATCA 60.675 57.895 0.00 0.00 41.67 3.07
26 27 2.409870 CCCTTTGGCTGACCGCATC 61.410 63.158 0.00 0.00 41.67 3.91
27 28 2.361610 CCCTTTGGCTGACCGCAT 60.362 61.111 0.00 0.00 41.67 4.73
28 29 4.659172 CCCCTTTGGCTGACCGCA 62.659 66.667 0.00 0.00 41.67 5.69
48 49 0.622446 AAGGGGTACGCCAATAGGGT 60.622 55.000 28.77 5.29 44.92 4.34
49 50 0.549469 AAAGGGGTACGCCAATAGGG 59.451 55.000 28.77 0.00 44.92 3.53
50 51 1.675552 CAAAGGGGTACGCCAATAGG 58.324 55.000 28.77 10.94 44.92 2.57
51 52 1.021968 GCAAAGGGGTACGCCAATAG 58.978 55.000 28.77 16.63 44.92 1.73
52 53 0.745128 CGCAAAGGGGTACGCCAATA 60.745 55.000 28.77 0.00 44.92 1.90
53 54 2.043980 CGCAAAGGGGTACGCCAAT 61.044 57.895 28.77 15.52 44.92 3.16
54 55 2.670251 CGCAAAGGGGTACGCCAA 60.670 61.111 28.77 0.00 44.92 4.52
55 56 3.599285 CTCGCAAAGGGGTACGCCA 62.599 63.158 28.77 7.90 44.92 5.69
56 57 2.818274 CTCGCAAAGGGGTACGCC 60.818 66.667 20.94 20.94 44.92 5.68
57 58 2.588856 ATCCTCGCAAAGGGGTACGC 62.589 60.000 0.29 0.29 46.23 4.42
58 59 0.810031 CATCCTCGCAAAGGGGTACG 60.810 60.000 2.46 0.00 46.23 3.67
59 60 1.095807 GCATCCTCGCAAAGGGGTAC 61.096 60.000 2.46 0.00 46.23 3.34
60 61 1.223487 GCATCCTCGCAAAGGGGTA 59.777 57.895 2.46 0.00 46.23 3.69
61 62 2.044946 GCATCCTCGCAAAGGGGT 60.045 61.111 2.46 0.00 46.23 4.95
62 63 3.204827 CGCATCCTCGCAAAGGGG 61.205 66.667 2.46 0.00 46.23 4.79
63 64 3.204827 CCGCATCCTCGCAAAGGG 61.205 66.667 2.46 0.00 46.23 3.95
65 66 0.740868 TCTTCCGCATCCTCGCAAAG 60.741 55.000 0.00 0.00 0.00 2.77
66 67 0.107703 ATCTTCCGCATCCTCGCAAA 60.108 50.000 0.00 0.00 0.00 3.68
67 68 0.530650 GATCTTCCGCATCCTCGCAA 60.531 55.000 0.00 0.00 0.00 4.85
68 69 1.068083 GATCTTCCGCATCCTCGCA 59.932 57.895 0.00 0.00 0.00 5.10
69 70 1.068083 TGATCTTCCGCATCCTCGC 59.932 57.895 0.00 0.00 0.00 5.03
70 71 0.103026 TGTGATCTTCCGCATCCTCG 59.897 55.000 0.00 0.00 0.00 4.63
71 72 2.540265 ATGTGATCTTCCGCATCCTC 57.460 50.000 0.00 0.00 32.31 3.71
72 73 2.171237 TCAATGTGATCTTCCGCATCCT 59.829 45.455 0.00 0.00 36.37 3.24
73 74 2.564771 TCAATGTGATCTTCCGCATCC 58.435 47.619 0.00 0.00 36.37 3.51
87 88 2.682856 GGCACATTACGGTGATCAATGT 59.317 45.455 0.00 0.00 42.17 2.71
88 89 2.286359 CGGCACATTACGGTGATCAATG 60.286 50.000 0.00 0.00 41.32 2.82
89 90 1.939934 CGGCACATTACGGTGATCAAT 59.060 47.619 0.00 0.00 41.32 2.57
90 91 1.364721 CGGCACATTACGGTGATCAA 58.635 50.000 0.00 0.00 41.32 2.57
91 92 0.461163 CCGGCACATTACGGTGATCA 60.461 55.000 0.00 0.00 44.85 2.92
92 93 2.307363 CCGGCACATTACGGTGATC 58.693 57.895 0.00 0.00 44.85 2.92
93 94 4.532490 CCGGCACATTACGGTGAT 57.468 55.556 0.00 0.00 44.85 3.06
98 99 2.086510 CCAGTTCCGGCACATTACG 58.913 57.895 7.08 0.00 0.00 3.18
107 108 2.452813 CGACATTCGCCAGTTCCGG 61.453 63.158 0.00 0.00 31.14 5.14
108 109 2.452813 CCGACATTCGCCAGTTCCG 61.453 63.158 0.00 0.00 38.82 4.30
109 110 2.750888 GCCGACATTCGCCAGTTCC 61.751 63.158 0.00 0.00 38.82 3.62
110 111 2.785258 GCCGACATTCGCCAGTTC 59.215 61.111 0.00 0.00 38.82 3.01
111 112 3.118454 CGCCGACATTCGCCAGTT 61.118 61.111 0.00 0.00 38.82 3.16
131 132 4.364686 ATCCCCAAGGTCCCGGGT 62.365 66.667 22.86 0.00 41.30 5.28
132 133 3.489513 GATCCCCAAGGTCCCGGG 61.490 72.222 16.85 16.85 42.67 5.73
133 134 2.270874 CTTGATCCCCAAGGTCCCGG 62.271 65.000 0.00 0.00 46.54 5.73
134 135 1.224592 CTTGATCCCCAAGGTCCCG 59.775 63.158 0.00 0.00 46.54 5.14
145 146 9.729281 TTAATTACGGGATTATTACCTTGATCC 57.271 33.333 0.00 0.00 37.84 3.36
148 149 9.768662 GACTTAATTACGGGATTATTACCTTGA 57.231 33.333 0.00 0.00 0.00 3.02
149 150 8.706035 CGACTTAATTACGGGATTATTACCTTG 58.294 37.037 0.00 0.00 0.00 3.61
150 151 7.874528 CCGACTTAATTACGGGATTATTACCTT 59.125 37.037 5.34 0.00 42.48 3.50
151 152 7.381323 CCGACTTAATTACGGGATTATTACCT 58.619 38.462 5.34 0.00 42.48 3.08
152 153 7.586714 CCGACTTAATTACGGGATTATTACC 57.413 40.000 5.34 0.00 42.48 2.85
163 164 3.119388 TGACCTCCACCGACTTAATTACG 60.119 47.826 0.00 0.00 0.00 3.18
164 165 4.460948 TGACCTCCACCGACTTAATTAC 57.539 45.455 0.00 0.00 0.00 1.89
165 166 5.046159 ACATTGACCTCCACCGACTTAATTA 60.046 40.000 0.00 0.00 0.00 1.40
166 167 4.261801 CATTGACCTCCACCGACTTAATT 58.738 43.478 0.00 0.00 0.00 1.40
167 168 3.263425 ACATTGACCTCCACCGACTTAAT 59.737 43.478 0.00 0.00 0.00 1.40
168 169 2.635915 ACATTGACCTCCACCGACTTAA 59.364 45.455 0.00 0.00 0.00 1.85
169 170 2.232941 GACATTGACCTCCACCGACTTA 59.767 50.000 0.00 0.00 0.00 2.24
170 171 1.002087 GACATTGACCTCCACCGACTT 59.998 52.381 0.00 0.00 0.00 3.01
171 172 0.608640 GACATTGACCTCCACCGACT 59.391 55.000 0.00 0.00 0.00 4.18
172 173 0.736325 CGACATTGACCTCCACCGAC 60.736 60.000 0.00 0.00 0.00 4.79
173 174 1.589630 CGACATTGACCTCCACCGA 59.410 57.895 0.00 0.00 0.00 4.69
174 175 2.100631 GCGACATTGACCTCCACCG 61.101 63.158 0.00 0.00 0.00 4.94
175 176 1.745489 GGCGACATTGACCTCCACC 60.745 63.158 0.00 0.00 0.00 4.61
176 177 0.535335 TAGGCGACATTGACCTCCAC 59.465 55.000 0.00 0.00 34.92 4.02
177 178 0.535335 GTAGGCGACATTGACCTCCA 59.465 55.000 0.00 0.00 34.92 3.86
178 179 0.535335 TGTAGGCGACATTGACCTCC 59.465 55.000 0.00 0.00 34.92 4.30
187 188 3.958147 TGAGGAATTCTATGTAGGCGACA 59.042 43.478 2.11 2.11 43.97 4.35
188 189 4.585955 TGAGGAATTCTATGTAGGCGAC 57.414 45.455 5.23 0.00 0.00 5.19
189 190 5.362717 TCTTTGAGGAATTCTATGTAGGCGA 59.637 40.000 5.23 0.00 0.00 5.54
190 191 5.601662 TCTTTGAGGAATTCTATGTAGGCG 58.398 41.667 5.23 0.00 0.00 5.52
206 207 2.486907 GGAGATCATGGCCCTCTTTGAG 60.487 54.545 0.00 0.00 0.00 3.02
207 208 1.492176 GGAGATCATGGCCCTCTTTGA 59.508 52.381 0.00 0.00 0.00 2.69
208 209 1.813092 CGGAGATCATGGCCCTCTTTG 60.813 57.143 0.00 0.00 0.00 2.77
209 210 0.471617 CGGAGATCATGGCCCTCTTT 59.528 55.000 0.00 0.00 0.00 2.52
210 211 1.414061 CCGGAGATCATGGCCCTCTT 61.414 60.000 0.00 0.00 0.00 2.85
211 212 1.840650 CCGGAGATCATGGCCCTCT 60.841 63.158 0.00 0.00 0.00 3.69
212 213 2.746359 CCGGAGATCATGGCCCTC 59.254 66.667 0.00 0.00 0.00 4.30
213 214 3.564218 GCCGGAGATCATGGCCCT 61.564 66.667 5.05 0.00 43.06 5.19
217 218 2.301296 ACTATCAAGCCGGAGATCATGG 59.699 50.000 5.05 0.00 0.00 3.66
218 219 3.244009 ACACTATCAAGCCGGAGATCATG 60.244 47.826 5.05 9.33 0.00 3.07
219 220 2.968574 ACACTATCAAGCCGGAGATCAT 59.031 45.455 5.05 0.00 0.00 2.45
220 221 2.101415 CACACTATCAAGCCGGAGATCA 59.899 50.000 5.05 0.00 0.00 2.92
221 222 2.748605 CACACTATCAAGCCGGAGATC 58.251 52.381 5.05 0.00 0.00 2.75
222 223 1.202580 GCACACTATCAAGCCGGAGAT 60.203 52.381 5.05 7.75 0.00 2.75
223 224 0.175760 GCACACTATCAAGCCGGAGA 59.824 55.000 5.05 0.00 0.00 3.71
224 225 0.811616 GGCACACTATCAAGCCGGAG 60.812 60.000 5.05 0.00 37.41 4.63
225 226 1.220749 GGCACACTATCAAGCCGGA 59.779 57.895 5.05 0.00 37.41 5.14
226 227 3.813596 GGCACACTATCAAGCCGG 58.186 61.111 0.00 0.00 37.41 6.13
229 230 2.558359 ACCTTTTGGCACACTATCAAGC 59.442 45.455 0.00 0.00 45.59 4.01
230 231 4.074970 AGACCTTTTGGCACACTATCAAG 58.925 43.478 0.00 0.00 45.59 3.02
231 232 3.820467 CAGACCTTTTGGCACACTATCAA 59.180 43.478 0.00 0.00 45.59 2.57
232 233 3.072330 TCAGACCTTTTGGCACACTATCA 59.928 43.478 0.00 0.00 45.59 2.15
233 234 3.674997 TCAGACCTTTTGGCACACTATC 58.325 45.455 0.00 0.00 45.59 2.08
234 235 3.788227 TCAGACCTTTTGGCACACTAT 57.212 42.857 0.00 0.00 45.59 2.12
235 236 3.569194 TTCAGACCTTTTGGCACACTA 57.431 42.857 0.00 0.00 45.59 2.74
236 237 2.435372 TTCAGACCTTTTGGCACACT 57.565 45.000 0.00 0.00 45.59 3.55
237 238 3.518634 TTTTCAGACCTTTTGGCACAC 57.481 42.857 0.00 0.00 45.59 3.82
255 256 6.294731 CCTGATAGCTTGCCAGTTAAGTTTTT 60.295 38.462 0.00 0.00 0.00 1.94
256 257 5.183904 CCTGATAGCTTGCCAGTTAAGTTTT 59.816 40.000 0.00 0.00 0.00 2.43
257 258 4.702131 CCTGATAGCTTGCCAGTTAAGTTT 59.298 41.667 0.00 0.00 0.00 2.66
258 259 4.265073 CCTGATAGCTTGCCAGTTAAGTT 58.735 43.478 0.00 0.00 0.00 2.66
259 260 3.878778 CCTGATAGCTTGCCAGTTAAGT 58.121 45.455 0.00 0.00 0.00 2.24
260 261 2.615912 GCCTGATAGCTTGCCAGTTAAG 59.384 50.000 0.00 0.00 0.00 1.85
261 262 2.643551 GCCTGATAGCTTGCCAGTTAA 58.356 47.619 0.00 0.00 0.00 2.01
262 263 1.134098 GGCCTGATAGCTTGCCAGTTA 60.134 52.381 0.00 0.00 43.46 2.24
263 264 0.394899 GGCCTGATAGCTTGCCAGTT 60.395 55.000 0.00 0.00 43.46 3.16
264 265 1.225704 GGCCTGATAGCTTGCCAGT 59.774 57.895 0.00 0.00 43.46 4.00
265 266 1.527844 GGGCCTGATAGCTTGCCAG 60.528 63.158 0.84 0.00 45.83 4.85
266 267 2.597340 GGGCCTGATAGCTTGCCA 59.403 61.111 0.84 0.00 45.83 4.92
267 268 2.203408 GGGGCCTGATAGCTTGCC 60.203 66.667 0.84 3.13 43.26 4.52
268 269 2.592861 CGGGGCCTGATAGCTTGC 60.593 66.667 6.48 0.00 0.00 4.01
269 270 2.111878 CCGGGGCCTGATAGCTTG 59.888 66.667 15.75 0.00 0.00 4.01
270 271 3.171388 CCCGGGGCCTGATAGCTT 61.171 66.667 14.71 0.00 0.00 3.74
284 285 4.143333 AACTCGACATCCGCCCCG 62.143 66.667 0.00 0.00 38.37 5.73
285 286 2.202892 GAACTCGACATCCGCCCC 60.203 66.667 0.00 0.00 38.37 5.80
286 287 1.144057 ATGAACTCGACATCCGCCC 59.856 57.895 0.00 0.00 38.37 6.13
287 288 1.766143 GCATGAACTCGACATCCGCC 61.766 60.000 0.00 0.00 38.37 6.13
288 289 1.638467 GCATGAACTCGACATCCGC 59.362 57.895 0.00 0.00 38.37 5.54
289 290 0.179100 AGGCATGAACTCGACATCCG 60.179 55.000 0.00 0.00 40.25 4.18
290 291 2.029838 AAGGCATGAACTCGACATCC 57.970 50.000 0.00 0.00 0.00 3.51
291 292 5.557136 CGATTAAAGGCATGAACTCGACATC 60.557 44.000 0.00 0.00 0.00 3.06
292 293 4.271049 CGATTAAAGGCATGAACTCGACAT 59.729 41.667 0.00 0.00 0.00 3.06
293 294 3.616821 CGATTAAAGGCATGAACTCGACA 59.383 43.478 0.00 0.00 0.00 4.35
294 295 3.544244 GCGATTAAAGGCATGAACTCGAC 60.544 47.826 0.00 0.00 0.00 4.20
295 296 2.607635 GCGATTAAAGGCATGAACTCGA 59.392 45.455 0.00 0.00 0.00 4.04
296 297 2.351418 TGCGATTAAAGGCATGAACTCG 59.649 45.455 0.00 0.00 33.52 4.18
297 298 4.346129 CTTGCGATTAAAGGCATGAACTC 58.654 43.478 0.00 0.00 39.21 3.01
298 299 3.428045 GCTTGCGATTAAAGGCATGAACT 60.428 43.478 16.27 0.00 39.21 3.01
299 300 2.854185 GCTTGCGATTAAAGGCATGAAC 59.146 45.455 16.27 0.00 39.21 3.18
300 301 2.754552 AGCTTGCGATTAAAGGCATGAA 59.245 40.909 16.27 0.00 39.21 2.57
301 302 2.368439 AGCTTGCGATTAAAGGCATGA 58.632 42.857 16.27 0.30 39.21 3.07
302 303 2.857592 AGCTTGCGATTAAAGGCATG 57.142 45.000 4.84 8.16 39.21 4.06
303 304 4.399303 AGTTTAGCTTGCGATTAAAGGCAT 59.601 37.500 0.00 0.00 39.21 4.40
304 305 3.756434 AGTTTAGCTTGCGATTAAAGGCA 59.244 39.130 0.00 0.13 37.39 4.75
305 306 4.357018 AGTTTAGCTTGCGATTAAAGGC 57.643 40.909 0.00 0.00 0.00 4.35
306 307 5.332707 GGAAGTTTAGCTTGCGATTAAAGG 58.667 41.667 0.00 0.00 37.59 3.11
315 316 2.416893 CGGAGAAGGAAGTTTAGCTTGC 59.583 50.000 0.00 0.00 44.59 4.01
316 317 3.926616 TCGGAGAAGGAAGTTTAGCTTG 58.073 45.455 0.00 0.00 37.59 4.01
317 318 3.833070 TCTCGGAGAAGGAAGTTTAGCTT 59.167 43.478 4.96 0.00 36.47 3.74
318 319 3.432378 TCTCGGAGAAGGAAGTTTAGCT 58.568 45.455 4.96 0.00 34.09 3.32
319 320 3.870633 TCTCGGAGAAGGAAGTTTAGC 57.129 47.619 4.96 0.00 34.09 3.09
320 321 4.167268 CGTTCTCGGAGAAGGAAGTTTAG 58.833 47.826 27.76 7.01 41.26 1.85
321 322 4.170292 CGTTCTCGGAGAAGGAAGTTTA 57.830 45.455 27.76 0.80 41.26 2.01
322 323 3.027974 CGTTCTCGGAGAAGGAAGTTT 57.972 47.619 27.76 0.00 41.26 2.66
323 324 2.726832 CGTTCTCGGAGAAGGAAGTT 57.273 50.000 27.76 0.00 41.26 2.66
348 349 1.450312 CGGAGAATGTGGCCCTCAC 60.450 63.158 0.00 0.00 46.23 3.51
349 350 2.989639 CGGAGAATGTGGCCCTCA 59.010 61.111 0.00 0.00 0.00 3.86
350 351 2.514824 GCGGAGAATGTGGCCCTC 60.515 66.667 0.00 0.00 0.00 4.30
351 352 2.543067 GAAGCGGAGAATGTGGCCCT 62.543 60.000 0.00 0.00 0.00 5.19
352 353 2.044946 AAGCGGAGAATGTGGCCC 60.045 61.111 0.00 0.00 0.00 5.80
353 354 2.115291 GGAAGCGGAGAATGTGGCC 61.115 63.158 0.00 0.00 0.00 5.36
354 355 0.960364 TTGGAAGCGGAGAATGTGGC 60.960 55.000 0.00 0.00 0.00 5.01
355 356 0.804989 GTTGGAAGCGGAGAATGTGG 59.195 55.000 0.00 0.00 0.00 4.17
356 357 1.197721 GTGTTGGAAGCGGAGAATGTG 59.802 52.381 0.00 0.00 0.00 3.21
357 358 1.523758 GTGTTGGAAGCGGAGAATGT 58.476 50.000 0.00 0.00 0.00 2.71
358 359 0.443869 CGTGTTGGAAGCGGAGAATG 59.556 55.000 0.00 0.00 0.00 2.67
359 360 1.298859 GCGTGTTGGAAGCGGAGAAT 61.299 55.000 0.00 0.00 0.00 2.40
360 361 1.959226 GCGTGTTGGAAGCGGAGAA 60.959 57.895 0.00 0.00 0.00 2.87
361 362 2.357034 GCGTGTTGGAAGCGGAGA 60.357 61.111 0.00 0.00 0.00 3.71
362 363 1.577328 AATGCGTGTTGGAAGCGGAG 61.577 55.000 0.00 0.00 0.00 4.63
363 364 1.599518 AATGCGTGTTGGAAGCGGA 60.600 52.632 0.00 0.00 0.00 5.54
364 365 1.442520 CAATGCGTGTTGGAAGCGG 60.443 57.895 0.00 0.00 0.00 5.52
365 366 0.168788 ATCAATGCGTGTTGGAAGCG 59.831 50.000 2.81 0.00 0.00 4.68
366 367 1.791555 CGATCAATGCGTGTTGGAAGC 60.792 52.381 0.00 0.00 0.00 3.86
367 368 1.791555 GCGATCAATGCGTGTTGGAAG 60.792 52.381 0.00 0.00 0.00 3.46
368 369 0.167908 GCGATCAATGCGTGTTGGAA 59.832 50.000 0.00 0.00 0.00 3.53
369 370 1.643868 GGCGATCAATGCGTGTTGGA 61.644 55.000 0.00 0.00 0.00 3.53
370 371 1.226379 GGCGATCAATGCGTGTTGG 60.226 57.895 0.00 0.00 0.00 3.77
371 372 1.226379 GGGCGATCAATGCGTGTTG 60.226 57.895 0.00 0.00 0.00 3.33
372 373 1.673993 TGGGCGATCAATGCGTGTT 60.674 52.632 0.00 0.00 0.00 3.32
373 374 2.046411 TGGGCGATCAATGCGTGT 60.046 55.556 0.00 0.00 0.00 4.49
374 375 2.404789 GTGGGCGATCAATGCGTG 59.595 61.111 0.00 0.00 0.00 5.34
375 376 2.824041 GGTGGGCGATCAATGCGT 60.824 61.111 0.00 0.00 0.00 5.24
376 377 3.585990 GGGTGGGCGATCAATGCG 61.586 66.667 0.00 0.00 0.00 4.73
377 378 2.440065 TGGGTGGGCGATCAATGC 60.440 61.111 0.00 0.00 0.00 3.56
378 379 0.394216 TTCTGGGTGGGCGATCAATG 60.394 55.000 0.00 0.00 0.00 2.82
379 380 0.107017 CTTCTGGGTGGGCGATCAAT 60.107 55.000 0.00 0.00 0.00 2.57
380 381 1.299648 CTTCTGGGTGGGCGATCAA 59.700 57.895 0.00 0.00 0.00 2.57
381 382 2.669133 CCTTCTGGGTGGGCGATCA 61.669 63.158 0.00 0.00 0.00 2.92
382 383 2.190578 CCTTCTGGGTGGGCGATC 59.809 66.667 0.00 0.00 0.00 3.69
391 392 1.450312 CTTGCGCCTACCTTCTGGG 60.450 63.158 4.18 0.00 41.89 4.45
392 393 0.460987 CTCTTGCGCCTACCTTCTGG 60.461 60.000 4.18 0.00 39.83 3.86
393 394 1.086634 GCTCTTGCGCCTACCTTCTG 61.087 60.000 4.18 0.00 0.00 3.02
394 395 1.219393 GCTCTTGCGCCTACCTTCT 59.781 57.895 4.18 0.00 0.00 2.85
395 396 1.815840 GGCTCTTGCGCCTACCTTC 60.816 63.158 4.18 0.00 46.63 3.46
396 397 2.269241 GGCTCTTGCGCCTACCTT 59.731 61.111 4.18 0.00 46.63 3.50
405 406 2.363406 ATGGGGCTTGGCTCTTGC 60.363 61.111 0.00 0.00 38.76 4.01
406 407 2.718073 GCATGGGGCTTGGCTCTTG 61.718 63.158 5.73 5.73 40.25 3.02
407 408 2.363406 GCATGGGGCTTGGCTCTT 60.363 61.111 0.00 0.00 40.25 2.85
408 409 3.228243 TTGCATGGGGCTTGGCTCT 62.228 57.895 0.00 0.00 45.15 4.09
409 410 2.681064 TTGCATGGGGCTTGGCTC 60.681 61.111 0.00 0.00 45.15 4.70
410 411 2.682494 CTTGCATGGGGCTTGGCT 60.682 61.111 0.00 0.00 45.15 4.75
411 412 3.777910 CCTTGCATGGGGCTTGGC 61.778 66.667 10.81 0.00 45.15 4.52
412 413 3.078836 CCCTTGCATGGGGCTTGG 61.079 66.667 26.65 3.10 43.45 3.61
419 420 0.679640 TTTACGGCTCCCTTGCATGG 60.680 55.000 11.68 11.68 34.04 3.66
420 421 1.173043 TTTTACGGCTCCCTTGCATG 58.827 50.000 0.00 0.00 34.04 4.06
421 422 1.818674 CTTTTTACGGCTCCCTTGCAT 59.181 47.619 0.00 0.00 34.04 3.96
422 423 1.243902 CTTTTTACGGCTCCCTTGCA 58.756 50.000 0.00 0.00 34.04 4.08
423 424 0.526211 CCTTTTTACGGCTCCCTTGC 59.474 55.000 0.00 0.00 0.00 4.01
424 425 1.173913 CCCTTTTTACGGCTCCCTTG 58.826 55.000 0.00 0.00 0.00 3.61
425 426 0.611062 GCCCTTTTTACGGCTCCCTT 60.611 55.000 0.00 0.00 42.21 3.95
426 427 1.001269 GCCCTTTTTACGGCTCCCT 60.001 57.895 0.00 0.00 42.21 4.20
427 428 3.599584 GCCCTTTTTACGGCTCCC 58.400 61.111 0.00 0.00 42.21 4.30
431 432 5.290158 GCTTTTATAAAGCCCTTTTTACGGC 59.710 40.000 12.01 0.00 46.09 5.68
432 433 6.880822 GCTTTTATAAAGCCCTTTTTACGG 57.119 37.500 12.01 0.00 37.30 4.02
443 444 3.844099 CGTGTTGACGGCTTTTATAAAGC 59.156 43.478 14.16 14.16 42.18 3.51
444 445 5.272167 TCGTGTTGACGGCTTTTATAAAG 57.728 39.130 0.00 0.00 46.11 1.85
445 446 4.377635 GCTCGTGTTGACGGCTTTTATAAA 60.378 41.667 0.00 0.00 46.11 1.40
446 447 3.123959 GCTCGTGTTGACGGCTTTTATAA 59.876 43.478 0.00 0.00 46.11 0.98
447 448 2.669434 GCTCGTGTTGACGGCTTTTATA 59.331 45.455 0.00 0.00 46.11 0.98
448 449 1.463444 GCTCGTGTTGACGGCTTTTAT 59.537 47.619 0.00 0.00 46.11 1.40
449 450 0.863144 GCTCGTGTTGACGGCTTTTA 59.137 50.000 0.00 0.00 46.11 1.52
450 451 1.647084 GCTCGTGTTGACGGCTTTT 59.353 52.632 0.00 0.00 46.11 2.27
451 452 2.594962 CGCTCGTGTTGACGGCTTT 61.595 57.895 0.00 0.00 46.11 3.51
452 453 3.036084 CGCTCGTGTTGACGGCTT 61.036 61.111 0.00 0.00 46.11 4.35
457 458 3.470567 CTCCGCGCTCGTGTTGAC 61.471 66.667 5.56 0.00 0.00 3.18
458 459 3.493830 AACTCCGCGCTCGTGTTGA 62.494 57.895 5.56 0.00 32.34 3.18
459 460 3.000080 GAACTCCGCGCTCGTGTTG 62.000 63.158 5.56 0.00 33.19 3.33
460 461 2.733593 GAACTCCGCGCTCGTGTT 60.734 61.111 5.56 8.64 34.77 3.32
471 472 4.681978 AGCACGTGGCCGAACTCC 62.682 66.667 18.88 0.00 46.50 3.85
472 473 3.414700 CAGCACGTGGCCGAACTC 61.415 66.667 18.88 0.00 46.50 3.01
487 488 4.749310 AGAACTCCGCGCCTGCAG 62.749 66.667 6.78 6.78 42.97 4.41
488 489 4.314440 AAGAACTCCGCGCCTGCA 62.314 61.111 0.00 0.00 42.97 4.41
489 490 3.491652 GAAGAACTCCGCGCCTGC 61.492 66.667 0.00 0.00 37.91 4.85
490 491 2.815647 GGAAGAACTCCGCGCCTG 60.816 66.667 0.00 0.00 33.37 4.85
491 492 4.083862 GGGAAGAACTCCGCGCCT 62.084 66.667 0.00 0.00 46.51 5.52
492 493 3.894547 TTGGGAAGAACTCCGCGCC 62.895 63.158 0.00 0.00 46.51 6.53
493 494 1.964373 TTTGGGAAGAACTCCGCGC 60.964 57.895 0.00 0.00 46.51 6.86
494 495 0.602905 AGTTTGGGAAGAACTCCGCG 60.603 55.000 0.00 0.00 46.51 6.46
495 496 1.605753 AAGTTTGGGAAGAACTCCGC 58.394 50.000 0.00 0.00 46.51 5.54
496 497 3.003378 GTGAAAGTTTGGGAAGAACTCCG 59.997 47.826 0.00 0.00 46.51 4.63
497 498 3.951680 TGTGAAAGTTTGGGAAGAACTCC 59.048 43.478 0.00 0.00 44.54 3.85
498 499 4.498177 GCTGTGAAAGTTTGGGAAGAACTC 60.498 45.833 0.00 0.00 36.38 3.01
499 500 3.381590 GCTGTGAAAGTTTGGGAAGAACT 59.618 43.478 0.00 0.00 38.92 3.01
500 501 3.490933 GGCTGTGAAAGTTTGGGAAGAAC 60.491 47.826 0.00 0.00 0.00 3.01
556 557 4.988598 CGCCAAGGACTGTGCCGT 62.989 66.667 0.00 0.00 0.00 5.68
611 613 3.984292 CTGATTTTGCAGCGAGGAC 57.016 52.632 0.00 0.00 0.00 3.85
641 644 3.225069 AATTTGCACAGTGCCGGGC 62.225 57.895 23.06 13.32 44.23 6.13
642 645 1.373246 CAATTTGCACAGTGCCGGG 60.373 57.895 23.06 4.37 44.23 5.73
643 646 0.031857 TTCAATTTGCACAGTGCCGG 59.968 50.000 23.06 0.00 44.23 6.13
644 647 1.850377 TTTCAATTTGCACAGTGCCG 58.150 45.000 23.06 6.39 44.23 5.69
646 649 2.738314 GGGATTTCAATTTGCACAGTGC 59.262 45.455 19.37 19.37 45.29 4.40
647 650 3.992643 TGGGATTTCAATTTGCACAGTG 58.007 40.909 0.00 0.00 0.00 3.66
648 651 4.379652 GTTGGGATTTCAATTTGCACAGT 58.620 39.130 0.00 0.00 0.00 3.55
649 652 3.747529 GGTTGGGATTTCAATTTGCACAG 59.252 43.478 0.00 0.00 0.00 3.66
650 653 3.135348 TGGTTGGGATTTCAATTTGCACA 59.865 39.130 0.00 0.00 0.00 4.57
651 654 3.737850 TGGTTGGGATTTCAATTTGCAC 58.262 40.909 0.00 0.00 0.00 4.57
652 655 4.637387 ATGGTTGGGATTTCAATTTGCA 57.363 36.364 0.00 0.00 0.00 4.08
653 656 7.628769 AAATATGGTTGGGATTTCAATTTGC 57.371 32.000 0.00 0.00 0.00 3.68
729 732 0.679640 GCCACATGACGGGAATTGGA 60.680 55.000 0.00 0.00 0.00 3.53
730 733 0.964860 TGCCACATGACGGGAATTGG 60.965 55.000 0.00 0.00 0.00 3.16
739 742 3.025287 ACGGAAATTTTGCCACATGAC 57.975 42.857 0.00 0.00 0.00 3.06
743 746 4.592485 ACAATACGGAAATTTTGCCACA 57.408 36.364 0.00 0.00 0.00 4.17
767 771 0.760189 GGCCCACCCTACCGTGTATA 60.760 60.000 0.00 0.00 31.47 1.47
768 772 2.068213 GGCCCACCCTACCGTGTAT 61.068 63.158 0.00 0.00 31.47 2.29
838 842 1.516423 GAGTAACTGAGGCGGGGAC 59.484 63.158 0.00 0.00 0.00 4.46
839 843 1.684734 GGAGTAACTGAGGCGGGGA 60.685 63.158 0.00 0.00 0.00 4.81
840 844 2.732619 GGGAGTAACTGAGGCGGGG 61.733 68.421 0.00 0.00 0.00 5.73
841 845 2.732619 GGGGAGTAACTGAGGCGGG 61.733 68.421 0.00 0.00 0.00 6.13
913 917 1.061570 CGGACGACTGGTACTACGC 59.938 63.158 0.00 0.00 0.00 4.42
922 926 2.033755 AGAGACGGACGGACGACTG 61.034 63.158 10.13 0.00 38.83 3.51
925 929 3.429141 GCAGAGACGGACGGACGA 61.429 66.667 8.01 0.00 37.61 4.20
926 930 3.384014 GAGCAGAGACGGACGGACG 62.384 68.421 0.00 0.00 40.31 4.79
927 931 1.984321 GAGAGCAGAGACGGACGGAC 61.984 65.000 0.00 0.00 0.00 4.79
928 932 1.745864 GAGAGCAGAGACGGACGGA 60.746 63.158 0.00 0.00 0.00 4.69
956 960 1.332889 TGATGATGAGGAGCAGGCGT 61.333 55.000 0.00 0.00 0.00 5.68
969 976 3.564218 GGCGAGGGGGCTGATGAT 61.564 66.667 0.00 0.00 38.40 2.45
1150 1157 1.751924 CCCCAAAACTTGACCGAAACA 59.248 47.619 0.00 0.00 0.00 2.83
1152 1159 2.092321 TCTCCCCAAAACTTGACCGAAA 60.092 45.455 0.00 0.00 0.00 3.46
1155 1162 1.523758 CTCTCCCCAAAACTTGACCG 58.476 55.000 0.00 0.00 0.00 4.79
1156 1163 1.145119 ACCTCTCCCCAAAACTTGACC 59.855 52.381 0.00 0.00 0.00 4.02
1157 1164 2.623416 CAACCTCTCCCCAAAACTTGAC 59.377 50.000 0.00 0.00 0.00 3.18
1380 1391 0.613292 GCAGAGTGGACAGAGAGGGA 60.613 60.000 0.00 0.00 0.00 4.20
1382 1393 1.896694 GGCAGAGTGGACAGAGAGG 59.103 63.158 0.00 0.00 0.00 3.69
1418 1429 1.646189 GAAGGCAGAGATCGAACCAC 58.354 55.000 0.00 0.00 0.00 4.16
1451 1462 1.011904 CAAGACATCAATCCGCGCG 60.012 57.895 25.67 25.67 0.00 6.86
1457 1468 3.548770 TCATCCTGCCAAGACATCAATC 58.451 45.455 0.00 0.00 0.00 2.67
1585 1596 2.885113 TGGACGATCTCCAGCACG 59.115 61.111 9.14 0.00 44.99 5.34
1667 1678 2.610859 GGCCTTCCTGGTCCTGGA 60.611 66.667 13.34 13.34 38.35 3.86
1966 1977 1.493311 CTTGTTCGACCGCTTCTGC 59.507 57.895 0.00 0.00 0.00 4.26
2213 2224 4.263018 TCATTGGCGAGATGAAGGATAG 57.737 45.455 0.00 0.00 30.96 2.08
2281 2292 3.285215 CTCATCATGCTGCCGCCC 61.285 66.667 0.00 0.00 34.43 6.13
2302 2313 3.575351 GACGGGTCGCTGCTTGAGT 62.575 63.158 0.00 0.00 0.00 3.41
2433 2444 2.032549 CAGAGTTTCTCTTTGTGGCACG 60.033 50.000 13.77 0.00 38.99 5.34
2475 2486 7.088905 ACGAAATGTAACGGATCCATATAGAC 58.911 38.462 13.41 1.12 0.00 2.59
2507 2522 4.499183 CAGACAAGATCAAGTACTCCCAC 58.501 47.826 0.00 0.00 0.00 4.61
2533 2548 7.393515 ACCAACAAGATCCAGATTAAAACTACC 59.606 37.037 0.00 0.00 0.00 3.18
2644 2659 0.598065 GAACGAATTGCTGCCCAACT 59.402 50.000 0.00 0.00 35.99 3.16
2645 2660 0.313672 TGAACGAATTGCTGCCCAAC 59.686 50.000 0.00 0.00 35.99 3.77
2646 2661 1.255882 ATGAACGAATTGCTGCCCAA 58.744 45.000 0.00 0.00 37.94 4.12
2647 2662 1.255882 AATGAACGAATTGCTGCCCA 58.744 45.000 0.00 0.00 0.00 5.36
2648 2663 2.094545 AGAAATGAACGAATTGCTGCCC 60.095 45.455 0.00 0.00 0.00 5.36
2649 2664 3.221964 AGAAATGAACGAATTGCTGCC 57.778 42.857 0.00 0.00 0.00 4.85
2650 2665 3.788163 GCTAGAAATGAACGAATTGCTGC 59.212 43.478 0.00 0.00 0.00 5.25
2651 2666 4.142622 TGGCTAGAAATGAACGAATTGCTG 60.143 41.667 0.00 0.00 0.00 4.41
2652 2667 4.009675 TGGCTAGAAATGAACGAATTGCT 58.990 39.130 0.00 0.00 0.00 3.91
2653 2668 4.094887 TCTGGCTAGAAATGAACGAATTGC 59.905 41.667 0.00 0.00 0.00 3.56
2654 2669 5.801350 TCTGGCTAGAAATGAACGAATTG 57.199 39.130 0.00 0.00 0.00 2.32
2804 4124 1.771746 AGCCGGGGATCATCACCAT 60.772 57.895 6.77 0.00 41.00 3.55
2840 4168 9.524496 GTAATAAAATCGGGGGATAAACCTAAT 57.476 33.333 0.00 0.00 38.98 1.73
2862 4190 1.676014 GGGCAGTGAACGAGCAGTAAT 60.676 52.381 0.00 0.00 0.00 1.89
2956 4293 1.792949 CTTTGGACCGTCTCGACAAAG 59.207 52.381 11.29 11.29 41.10 2.77
2995 4332 5.692115 TCTTTGCAGTATACAATCCAGGA 57.308 39.130 5.50 0.00 0.00 3.86
2996 4333 5.240183 CCATCTTTGCAGTATACAATCCAGG 59.760 44.000 5.50 0.00 0.00 4.45
2998 4335 4.580167 GCCATCTTTGCAGTATACAATCCA 59.420 41.667 5.50 0.00 0.00 3.41
2999 4336 4.022849 GGCCATCTTTGCAGTATACAATCC 60.023 45.833 5.50 0.00 0.00 3.01
3001 4338 4.339247 GTGGCCATCTTTGCAGTATACAAT 59.661 41.667 9.72 0.00 0.00 2.71
3002 4339 3.694072 GTGGCCATCTTTGCAGTATACAA 59.306 43.478 9.72 0.00 0.00 2.41
3021 4362 2.299867 AGCAAGCATTTTTACCCAGTGG 59.700 45.455 0.63 0.63 37.80 4.00
3025 4366 8.050325 TCTACTATAAGCAAGCATTTTTACCCA 58.950 33.333 0.00 0.00 0.00 4.51
3138 4479 4.617959 TCAACTTCGAGTACAAGACAAGG 58.382 43.478 0.00 0.00 0.00 3.61
3163 4504 8.831715 TCGTGGACGTATATATAAGAGTACAA 57.168 34.615 11.97 0.00 40.80 2.41
3171 4512 5.247862 TGAGCCTCGTGGACGTATATATAA 58.752 41.667 7.92 0.00 40.80 0.98
3182 4523 0.901827 TATTGCTTGAGCCTCGTGGA 59.098 50.000 7.92 0.00 41.18 4.02
3212 4553 2.012051 GCGACATAAAGGACTGGTGGG 61.012 57.143 0.00 0.00 0.00 4.61
3219 4560 3.550678 CCGTTAGAAGCGACATAAAGGAC 59.449 47.826 0.00 0.00 31.96 3.85
3231 4572 1.633561 GACCCGTTACCGTTAGAAGC 58.366 55.000 0.00 0.00 0.00 3.86
3240 4581 1.929169 GATAAACTGCGACCCGTTACC 59.071 52.381 0.00 0.00 0.00 2.85
3245 4586 1.257936 CGATTGATAAACTGCGACCCG 59.742 52.381 0.00 0.00 0.00 5.28
3247 4588 1.003866 GCCGATTGATAAACTGCGACC 60.004 52.381 0.00 0.00 0.00 4.79
3254 4595 4.270325 ACTTAGCTTCGCCGATTGATAAAC 59.730 41.667 0.00 0.00 0.00 2.01
3355 4702 5.126067 CCTTCTCTCACCAAAACTTCAAGA 58.874 41.667 0.00 0.00 0.00 3.02
3386 4734 1.668151 GAACCACTCCCTGCACGTC 60.668 63.158 0.00 0.00 0.00 4.34
3387 4735 1.768684 ATGAACCACTCCCTGCACGT 61.769 55.000 0.00 0.00 0.00 4.49
3515 4864 3.240134 GAAGAGGGTGCTGCGTCCA 62.240 63.158 13.90 0.00 0.00 4.02
3522 4871 3.483352 TCTTGAGGAAGAGGGTGCT 57.517 52.632 0.00 0.00 32.98 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.