Multiple sequence alignment - TraesCS1A01G281100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G281100 chr1A 100.000 5960 0 0 1 5960 479540077 479546036 0.000000e+00 11007.0
1 TraesCS1A01G281100 chr1D 94.114 5148 158 48 902 5960 378699220 378704311 0.000000e+00 7694.0
2 TraesCS1A01G281100 chr1D 93.156 526 11 13 343 855 378698150 378698663 0.000000e+00 749.0
3 TraesCS1A01G281100 chr1D 97.778 45 1 0 2979 3023 211633485 211633441 1.780000e-10 78.7
4 TraesCS1A01G281100 chr1D 95.556 45 2 0 2979 3023 256999896 256999940 8.290000e-09 73.1
5 TraesCS1A01G281100 chr1B 93.421 3359 114 46 334 3640 507305609 507308912 0.000000e+00 4879.0
6 TraesCS1A01G281100 chr1B 89.833 2095 103 38 3933 5960 507309331 507311382 0.000000e+00 2588.0
7 TraesCS1A01G281100 chr3A 82.353 221 18 10 4749 4963 612523805 612523600 7.940000e-39 172.0
8 TraesCS1A01G281100 chr3A 92.683 82 5 1 16 96 186733982 186734063 3.770000e-22 117.0
9 TraesCS1A01G281100 chr3A 92.105 38 2 1 3652 3688 24010125 24010162 1.100000e-02 52.8
10 TraesCS1A01G281100 chr3A 100.000 28 0 0 3638 3665 123982077 123982104 1.100000e-02 52.8
11 TraesCS1A01G281100 chr3B 74.946 467 61 39 1179 1598 624320945 624320488 4.780000e-36 163.0
12 TraesCS1A01G281100 chr3B 92.857 84 6 0 18 101 667650245 667650328 8.110000e-24 122.0
13 TraesCS1A01G281100 chr3B 97.619 42 1 0 2980 3021 552221599 552221640 8.290000e-09 73.1
14 TraesCS1A01G281100 chr3B 94.595 37 2 0 3641 3677 7333078 7333042 2.320000e-04 58.4
15 TraesCS1A01G281100 chr5D 90.805 87 8 0 15 101 6918888 6918974 3.770000e-22 117.0
16 TraesCS1A01G281100 chr4B 92.683 82 5 1 19 100 575684626 575684546 3.770000e-22 117.0
17 TraesCS1A01G281100 chr4D 91.566 83 7 0 19 101 274741044 274740962 1.360000e-21 115.0
18 TraesCS1A01G281100 chr4D 91.566 83 7 0 19 101 327717057 327716975 1.360000e-21 115.0
19 TraesCS1A01G281100 chr4D 93.617 47 2 1 2979 3024 366328232 366328278 1.070000e-07 69.4
20 TraesCS1A01G281100 chr3D 90.476 84 8 0 18 101 442524442 442524525 1.760000e-20 111.0
21 TraesCS1A01G281100 chr3D 92.105 38 2 1 3652 3688 13182121 13182084 1.100000e-02 52.8
22 TraesCS1A01G281100 chr5B 88.506 87 10 0 15 101 449839775 449839861 8.170000e-19 106.0
23 TraesCS1A01G281100 chr2A 87.209 86 11 0 16 101 673032185 673032100 1.370000e-16 99.0
24 TraesCS1A01G281100 chr7B 97.727 44 1 0 2979 3022 559531978 559532021 6.410000e-10 76.8
25 TraesCS1A01G281100 chr2B 97.561 41 1 0 2979 3019 588071321 588071281 2.980000e-08 71.3
26 TraesCS1A01G281100 chr4A 93.617 47 2 1 2979 3024 98595158 98595112 1.070000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G281100 chr1A 479540077 479546036 5959 False 11007.0 11007 100.000 1 5960 1 chr1A.!!$F1 5959
1 TraesCS1A01G281100 chr1D 378698150 378704311 6161 False 4221.5 7694 93.635 343 5960 2 chr1D.!!$F2 5617
2 TraesCS1A01G281100 chr1B 507305609 507311382 5773 False 3733.5 4879 91.627 334 5960 2 chr1B.!!$F1 5626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12 F
227 228 0.105224 TGGGTACACACCGACAACAG 59.895 55.000 0.00 0.00 46.86 3.16 F
680 690 0.112412 GAGAAAGGAAAGGCACCCCA 59.888 55.000 0.00 0.00 0.00 4.96 F
872 882 0.252742 TCCACCCCTCCCTCTCTTTC 60.253 60.000 0.00 0.00 0.00 2.62 F
873 883 0.252927 CCACCCCTCCCTCTCTTTCT 60.253 60.000 0.00 0.00 0.00 2.52 F
2726 3291 1.002624 GACATGGCCAACTTCGGGA 60.003 57.895 10.96 0.00 0.00 5.14 F
2767 3332 0.393808 TTATGAGGGGAAGCAACGCC 60.394 55.000 7.89 7.89 42.13 5.68 F
3301 3868 1.281867 TCCACTGAAATTGCGGATCCT 59.718 47.619 10.75 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1763 1.423921 GAGTAGGAGGAGGAGGAGGAG 59.576 61.905 0.00 0.0 0.00 3.69 R
2040 2582 2.710096 ACCACTACTGTGTGCAACTT 57.290 45.000 0.00 0.0 42.34 2.66 R
2635 3200 1.065926 TGGCTCTGTATGGTGCTCTTG 60.066 52.381 0.00 0.0 0.00 3.02 R
2749 3314 1.223487 GGCGTTGCTTCCCCTCATA 59.777 57.895 0.00 0.0 0.00 2.15 R
2767 3332 2.639286 GGCTGGCTGAACGTGTTG 59.361 61.111 0.00 0.0 0.00 3.33 R
4155 4974 0.246635 TCCTCGTTAAGCCTGTCTGC 59.753 55.000 0.00 0.0 0.00 4.26 R
4533 5358 1.391157 TTTGCCCTTGCTGCGAGTTT 61.391 50.000 15.46 0.0 38.71 2.66 R
5280 6124 0.734889 GCAAGTCGATCAATGGGTGG 59.265 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.726490 TTGTTACTATGACATACTCCCTCC 57.274 41.667 0.00 0.00 0.00 4.30
28 29 4.825634 TGTTACTATGACATACTCCCTCCG 59.174 45.833 0.00 0.00 0.00 4.63
29 30 3.596940 ACTATGACATACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
30 31 3.488363 ACTATGACATACTCCCTCCGTC 58.512 50.000 0.00 0.00 0.00 4.79
31 32 1.705873 ATGACATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
32 33 0.396695 TGACATACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
33 34 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
34 35 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
35 36 0.753262 CATACTCCCTCCGTCCCAAG 59.247 60.000 0.00 0.00 0.00 3.61
36 37 0.635009 ATACTCCCTCCGTCCCAAGA 59.365 55.000 0.00 0.00 0.00 3.02
37 38 0.635009 TACTCCCTCCGTCCCAAGAT 59.365 55.000 0.00 0.00 0.00 2.40
38 39 0.635009 ACTCCCTCCGTCCCAAGATA 59.365 55.000 0.00 0.00 0.00 1.98
39 40 1.007963 ACTCCCTCCGTCCCAAGATAA 59.992 52.381 0.00 0.00 0.00 1.75
40 41 1.689273 CTCCCTCCGTCCCAAGATAAG 59.311 57.143 0.00 0.00 0.00 1.73
41 42 1.007963 TCCCTCCGTCCCAAGATAAGT 59.992 52.381 0.00 0.00 0.00 2.24
42 43 1.139058 CCCTCCGTCCCAAGATAAGTG 59.861 57.143 0.00 0.00 0.00 3.16
43 44 1.831736 CCTCCGTCCCAAGATAAGTGT 59.168 52.381 0.00 0.00 0.00 3.55
44 45 2.159085 CCTCCGTCCCAAGATAAGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
45 46 2.761208 CTCCGTCCCAAGATAAGTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
46 47 2.758979 TCCGTCCCAAGATAAGTGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
47 48 2.496070 CCGTCCCAAGATAAGTGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
48 49 3.056107 CCGTCCCAAGATAAGTGTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
49 50 4.177026 CGTCCCAAGATAAGTGTCTCAAG 58.823 47.826 0.00 0.00 0.00 3.02
50 51 3.935828 GTCCCAAGATAAGTGTCTCAAGC 59.064 47.826 0.00 0.00 0.00 4.01
51 52 3.840666 TCCCAAGATAAGTGTCTCAAGCT 59.159 43.478 0.00 0.00 0.00 3.74
52 53 4.287067 TCCCAAGATAAGTGTCTCAAGCTT 59.713 41.667 0.00 0.00 0.00 3.74
53 54 5.483937 TCCCAAGATAAGTGTCTCAAGCTTA 59.516 40.000 0.00 0.00 0.00 3.09
54 55 5.814705 CCCAAGATAAGTGTCTCAAGCTTAG 59.185 44.000 0.00 0.00 0.00 2.18
55 56 6.402222 CCAAGATAAGTGTCTCAAGCTTAGT 58.598 40.000 0.00 0.00 0.00 2.24
56 57 7.363880 CCCAAGATAAGTGTCTCAAGCTTAGTA 60.364 40.741 0.00 0.00 0.00 1.82
57 58 7.489757 CCAAGATAAGTGTCTCAAGCTTAGTAC 59.510 40.741 0.00 0.00 0.00 2.73
58 59 7.704578 AGATAAGTGTCTCAAGCTTAGTACA 57.295 36.000 0.00 0.36 0.00 2.90
59 60 8.123639 AGATAAGTGTCTCAAGCTTAGTACAA 57.876 34.615 0.00 0.00 0.00 2.41
60 61 8.585881 AGATAAGTGTCTCAAGCTTAGTACAAA 58.414 33.333 0.00 0.00 0.00 2.83
61 62 9.372369 GATAAGTGTCTCAAGCTTAGTACAAAT 57.628 33.333 0.00 0.00 0.00 2.32
62 63 9.726438 ATAAGTGTCTCAAGCTTAGTACAAATT 57.274 29.630 0.00 5.21 0.00 1.82
63 64 8.451908 AAGTGTCTCAAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
64 65 9.555727 AAGTGTCTCAAGCTTAGTACAAATTTA 57.444 29.630 0.00 0.00 0.00 1.40
65 66 9.726438 AGTGTCTCAAGCTTAGTACAAATTTAT 57.274 29.630 0.00 0.00 0.00 1.40
111 112 8.856490 AAGACACTTATTTTGTTTAGCTTGTG 57.144 30.769 0.00 0.00 0.00 3.33
112 113 7.425606 AGACACTTATTTTGTTTAGCTTGTGG 58.574 34.615 0.00 0.00 0.00 4.17
113 114 6.512297 ACACTTATTTTGTTTAGCTTGTGGG 58.488 36.000 0.00 0.00 0.00 4.61
114 115 6.322712 ACACTTATTTTGTTTAGCTTGTGGGA 59.677 34.615 0.00 0.00 0.00 4.37
115 116 6.640907 CACTTATTTTGTTTAGCTTGTGGGAC 59.359 38.462 0.00 0.00 0.00 4.46
116 117 6.322712 ACTTATTTTGTTTAGCTTGTGGGACA 59.677 34.615 0.00 0.00 0.00 4.02
117 118 5.806654 ATTTTGTTTAGCTTGTGGGACAT 57.193 34.783 0.00 0.00 44.52 3.06
118 119 6.909550 ATTTTGTTTAGCTTGTGGGACATA 57.090 33.333 0.00 0.00 44.52 2.29
119 120 6.716934 TTTTGTTTAGCTTGTGGGACATAA 57.283 33.333 0.00 0.00 44.52 1.90
120 121 6.716934 TTTGTTTAGCTTGTGGGACATAAA 57.283 33.333 0.00 0.00 44.52 1.40
121 122 6.909550 TTGTTTAGCTTGTGGGACATAAAT 57.090 33.333 0.00 0.00 44.52 1.40
122 123 6.909550 TGTTTAGCTTGTGGGACATAAATT 57.090 33.333 0.00 0.00 44.52 1.82
123 124 7.296628 TGTTTAGCTTGTGGGACATAAATTT 57.703 32.000 0.00 0.00 44.52 1.82
124 125 7.375053 TGTTTAGCTTGTGGGACATAAATTTC 58.625 34.615 0.00 0.00 44.52 2.17
125 126 7.014711 TGTTTAGCTTGTGGGACATAAATTTCA 59.985 33.333 0.00 0.00 44.52 2.69
126 127 7.531857 TTAGCTTGTGGGACATAAATTTCAA 57.468 32.000 0.00 0.00 44.52 2.69
127 128 6.610075 AGCTTGTGGGACATAAATTTCAAT 57.390 33.333 0.00 0.00 44.52 2.57
128 129 6.400568 AGCTTGTGGGACATAAATTTCAATG 58.599 36.000 0.00 0.00 44.52 2.82
129 130 5.581874 GCTTGTGGGACATAAATTTCAATGG 59.418 40.000 0.00 0.00 44.52 3.16
130 131 6.574073 GCTTGTGGGACATAAATTTCAATGGA 60.574 38.462 0.00 0.00 44.52 3.41
131 132 6.924913 TGTGGGACATAAATTTCAATGGAA 57.075 33.333 0.00 0.00 44.52 3.53
132 133 7.308450 TGTGGGACATAAATTTCAATGGAAA 57.692 32.000 0.00 0.00 44.15 3.13
134 135 8.040132 TGTGGGACATAAATTTCAATGGAAATC 58.960 33.333 8.55 0.00 46.64 2.17
135 136 7.222611 GTGGGACATAAATTTCAATGGAAATCG 59.777 37.037 8.55 1.55 46.64 3.34
148 149 9.757227 TTCAATGGAAATCGTTTTGTTAAATCT 57.243 25.926 0.00 0.00 0.00 2.40
185 186 8.979574 AGATTTTGTTTAAGTCTAAGTCGTCTG 58.020 33.333 0.00 0.00 31.68 3.51
186 187 8.882415 ATTTTGTTTAAGTCTAAGTCGTCTGA 57.118 30.769 0.00 0.00 0.00 3.27
187 188 8.882415 TTTTGTTTAAGTCTAAGTCGTCTGAT 57.118 30.769 0.00 0.00 0.00 2.90
188 189 9.970395 TTTTGTTTAAGTCTAAGTCGTCTGATA 57.030 29.630 0.00 0.00 0.00 2.15
190 191 9.784680 TTGTTTAAGTCTAAGTCGTCTGATATC 57.215 33.333 0.00 0.00 0.00 1.63
191 192 9.175312 TGTTTAAGTCTAAGTCGTCTGATATCT 57.825 33.333 3.98 0.00 0.00 1.98
197 198 9.344772 AGTCTAAGTCGTCTGATATCTTTATGT 57.655 33.333 3.98 0.00 0.00 2.29
198 199 9.388346 GTCTAAGTCGTCTGATATCTTTATGTG 57.612 37.037 3.98 0.00 0.00 3.21
199 200 8.568794 TCTAAGTCGTCTGATATCTTTATGTGG 58.431 37.037 3.98 0.00 0.00 4.17
200 201 6.961360 AGTCGTCTGATATCTTTATGTGGA 57.039 37.500 3.98 0.00 0.00 4.02
201 202 6.976088 AGTCGTCTGATATCTTTATGTGGAG 58.024 40.000 3.98 0.00 0.00 3.86
202 203 6.547880 AGTCGTCTGATATCTTTATGTGGAGT 59.452 38.462 3.98 0.00 0.00 3.85
203 204 7.068839 AGTCGTCTGATATCTTTATGTGGAGTT 59.931 37.037 3.98 0.00 0.00 3.01
204 205 7.707035 GTCGTCTGATATCTTTATGTGGAGTTT 59.293 37.037 3.98 0.00 0.00 2.66
205 206 8.258007 TCGTCTGATATCTTTATGTGGAGTTTT 58.742 33.333 3.98 0.00 0.00 2.43
206 207 8.331022 CGTCTGATATCTTTATGTGGAGTTTTG 58.669 37.037 3.98 0.00 0.00 2.44
207 208 9.167311 GTCTGATATCTTTATGTGGAGTTTTGT 57.833 33.333 3.98 0.00 0.00 2.83
208 209 9.739276 TCTGATATCTTTATGTGGAGTTTTGTT 57.261 29.630 3.98 0.00 0.00 2.83
209 210 9.778993 CTGATATCTTTATGTGGAGTTTTGTTG 57.221 33.333 3.98 0.00 0.00 3.33
210 211 8.739039 TGATATCTTTATGTGGAGTTTTGTTGG 58.261 33.333 3.98 0.00 0.00 3.77
211 212 5.782893 TCTTTATGTGGAGTTTTGTTGGG 57.217 39.130 0.00 0.00 0.00 4.12
212 213 5.205056 TCTTTATGTGGAGTTTTGTTGGGT 58.795 37.500 0.00 0.00 0.00 4.51
213 214 6.366340 TCTTTATGTGGAGTTTTGTTGGGTA 58.634 36.000 0.00 0.00 0.00 3.69
214 215 6.263617 TCTTTATGTGGAGTTTTGTTGGGTAC 59.736 38.462 0.00 0.00 0.00 3.34
215 216 3.367646 TGTGGAGTTTTGTTGGGTACA 57.632 42.857 0.00 0.00 34.12 2.90
216 217 3.018149 TGTGGAGTTTTGTTGGGTACAC 58.982 45.455 0.00 0.00 36.21 2.90
217 218 3.018149 GTGGAGTTTTGTTGGGTACACA 58.982 45.455 0.00 0.00 36.21 3.72
218 219 3.018149 TGGAGTTTTGTTGGGTACACAC 58.982 45.455 0.00 0.00 36.21 3.82
219 220 2.359848 GGAGTTTTGTTGGGTACACACC 59.640 50.000 0.00 0.00 44.96 4.16
220 221 2.018515 AGTTTTGTTGGGTACACACCG 58.981 47.619 0.00 0.00 46.86 4.94
221 222 2.015587 GTTTTGTTGGGTACACACCGA 58.984 47.619 0.00 0.00 46.86 4.69
222 223 1.666054 TTTGTTGGGTACACACCGAC 58.334 50.000 0.00 0.00 46.86 4.79
224 225 0.540454 TGTTGGGTACACACCGACAA 59.460 50.000 0.00 0.00 46.69 3.18
225 226 0.939419 GTTGGGTACACACCGACAAC 59.061 55.000 0.00 0.00 46.86 3.32
226 227 0.540454 TTGGGTACACACCGACAACA 59.460 50.000 0.00 0.00 46.86 3.33
227 228 0.105224 TGGGTACACACCGACAACAG 59.895 55.000 0.00 0.00 46.86 3.16
228 229 0.390124 GGGTACACACCGACAACAGA 59.610 55.000 0.00 0.00 46.86 3.41
229 230 1.202557 GGGTACACACCGACAACAGAA 60.203 52.381 0.00 0.00 46.86 3.02
230 231 2.553086 GGTACACACCGACAACAGAAA 58.447 47.619 0.00 0.00 34.36 2.52
231 232 2.937799 GGTACACACCGACAACAGAAAA 59.062 45.455 0.00 0.00 34.36 2.29
232 233 3.562557 GGTACACACCGACAACAGAAAAT 59.437 43.478 0.00 0.00 34.36 1.82
233 234 3.963383 ACACACCGACAACAGAAAATC 57.037 42.857 0.00 0.00 0.00 2.17
234 235 3.275143 ACACACCGACAACAGAAAATCA 58.725 40.909 0.00 0.00 0.00 2.57
235 236 3.692101 ACACACCGACAACAGAAAATCAA 59.308 39.130 0.00 0.00 0.00 2.57
236 237 4.201910 ACACACCGACAACAGAAAATCAAG 60.202 41.667 0.00 0.00 0.00 3.02
237 238 4.035091 CACACCGACAACAGAAAATCAAGA 59.965 41.667 0.00 0.00 0.00 3.02
238 239 4.821805 ACACCGACAACAGAAAATCAAGAT 59.178 37.500 0.00 0.00 0.00 2.40
239 240 5.299279 ACACCGACAACAGAAAATCAAGATT 59.701 36.000 0.00 0.00 0.00 2.40
240 241 6.485313 ACACCGACAACAGAAAATCAAGATTA 59.515 34.615 0.00 0.00 0.00 1.75
241 242 7.012894 ACACCGACAACAGAAAATCAAGATTAA 59.987 33.333 0.00 0.00 0.00 1.40
242 243 7.860373 CACCGACAACAGAAAATCAAGATTAAA 59.140 33.333 0.00 0.00 0.00 1.52
243 244 8.576442 ACCGACAACAGAAAATCAAGATTAAAT 58.424 29.630 0.00 0.00 0.00 1.40
244 245 9.065871 CCGACAACAGAAAATCAAGATTAAATC 57.934 33.333 0.00 0.00 0.00 2.17
245 246 9.611284 CGACAACAGAAAATCAAGATTAAATCA 57.389 29.630 0.00 0.00 0.00 2.57
258 259 6.910536 AGATTAAATCATCTTGTCGACACC 57.089 37.500 19.90 0.00 28.19 4.16
259 260 6.406370 AGATTAAATCATCTTGTCGACACCA 58.594 36.000 19.90 8.02 28.19 4.17
260 261 7.050377 AGATTAAATCATCTTGTCGACACCAT 58.950 34.615 19.90 10.23 28.19 3.55
261 262 7.554118 AGATTAAATCATCTTGTCGACACCATT 59.446 33.333 19.90 9.01 28.19 3.16
262 263 4.952262 AATCATCTTGTCGACACCATTG 57.048 40.909 19.90 13.44 0.00 2.82
263 264 3.676291 TCATCTTGTCGACACCATTGA 57.324 42.857 19.90 15.49 0.00 2.57
264 265 4.206477 TCATCTTGTCGACACCATTGAT 57.794 40.909 19.90 13.37 0.00 2.57
265 266 5.337578 TCATCTTGTCGACACCATTGATA 57.662 39.130 19.90 0.00 0.00 2.15
266 267 5.917462 TCATCTTGTCGACACCATTGATAT 58.083 37.500 19.90 0.00 0.00 1.63
267 268 5.754890 TCATCTTGTCGACACCATTGATATG 59.245 40.000 19.90 10.75 0.00 1.78
268 269 5.337578 TCTTGTCGACACCATTGATATGA 57.662 39.130 19.90 0.00 33.37 2.15
269 270 5.351458 TCTTGTCGACACCATTGATATGAG 58.649 41.667 19.90 8.44 33.37 2.90
270 271 5.127031 TCTTGTCGACACCATTGATATGAGA 59.873 40.000 19.90 10.81 33.37 3.27
271 272 5.337578 TGTCGACACCATTGATATGAGAA 57.662 39.130 15.76 0.00 33.37 2.87
272 273 5.729510 TGTCGACACCATTGATATGAGAAA 58.270 37.500 15.76 0.00 33.37 2.52
273 274 6.169800 TGTCGACACCATTGATATGAGAAAA 58.830 36.000 15.76 0.00 33.37 2.29
274 275 6.823182 TGTCGACACCATTGATATGAGAAAAT 59.177 34.615 15.76 0.00 33.37 1.82
275 276 7.011389 TGTCGACACCATTGATATGAGAAAATC 59.989 37.037 15.76 0.00 33.37 2.17
276 277 7.225538 GTCGACACCATTGATATGAGAAAATCT 59.774 37.037 11.55 0.00 33.37 2.40
277 278 7.770433 TCGACACCATTGATATGAGAAAATCTT 59.230 33.333 0.00 0.00 33.37 2.40
278 279 8.066595 CGACACCATTGATATGAGAAAATCTTC 58.933 37.037 0.00 0.00 33.37 2.87
279 280 8.812513 ACACCATTGATATGAGAAAATCTTCA 57.187 30.769 0.00 0.00 33.37 3.02
280 281 9.246670 ACACCATTGATATGAGAAAATCTTCAA 57.753 29.630 0.00 0.00 33.37 2.69
287 288 9.038803 TGATATGAGAAAATCTTCAATGACTCG 57.961 33.333 0.00 0.00 33.64 4.18
288 289 5.536554 TGAGAAAATCTTCAATGACTCGC 57.463 39.130 0.00 0.00 33.64 5.03
289 290 4.996758 TGAGAAAATCTTCAATGACTCGCA 59.003 37.500 0.00 0.00 33.64 5.10
290 291 5.469760 TGAGAAAATCTTCAATGACTCGCAA 59.530 36.000 0.00 0.00 33.64 4.85
291 292 6.017192 TGAGAAAATCTTCAATGACTCGCAAA 60.017 34.615 0.00 0.00 33.64 3.68
292 293 6.738114 AGAAAATCTTCAATGACTCGCAAAA 58.262 32.000 0.00 0.00 33.64 2.44
293 294 7.373493 AGAAAATCTTCAATGACTCGCAAAAT 58.627 30.769 0.00 0.00 33.64 1.82
294 295 8.514594 AGAAAATCTTCAATGACTCGCAAAATA 58.485 29.630 0.00 0.00 33.64 1.40
295 296 9.128107 GAAAATCTTCAATGACTCGCAAAATAA 57.872 29.630 0.00 0.00 0.00 1.40
296 297 9.474920 AAAATCTTCAATGACTCGCAAAATAAA 57.525 25.926 0.00 0.00 0.00 1.40
297 298 9.474920 AAATCTTCAATGACTCGCAAAATAAAA 57.525 25.926 0.00 0.00 0.00 1.52
298 299 8.679288 ATCTTCAATGACTCGCAAAATAAAAG 57.321 30.769 0.00 0.00 0.00 2.27
299 300 7.083858 TCTTCAATGACTCGCAAAATAAAAGG 58.916 34.615 0.00 0.00 0.00 3.11
300 301 6.567687 TCAATGACTCGCAAAATAAAAGGA 57.432 33.333 0.00 0.00 0.00 3.36
301 302 6.611381 TCAATGACTCGCAAAATAAAAGGAG 58.389 36.000 0.00 0.00 0.00 3.69
302 303 6.429692 TCAATGACTCGCAAAATAAAAGGAGA 59.570 34.615 0.00 0.00 0.00 3.71
303 304 6.817765 ATGACTCGCAAAATAAAAGGAGAA 57.182 33.333 0.00 0.00 0.00 2.87
304 305 6.627395 TGACTCGCAAAATAAAAGGAGAAA 57.373 33.333 0.00 0.00 0.00 2.52
305 306 7.033530 TGACTCGCAAAATAAAAGGAGAAAA 57.966 32.000 0.00 0.00 0.00 2.29
306 307 7.657336 TGACTCGCAAAATAAAAGGAGAAAAT 58.343 30.769 0.00 0.00 0.00 1.82
307 308 7.807907 TGACTCGCAAAATAAAAGGAGAAAATC 59.192 33.333 0.00 0.00 0.00 2.17
308 309 7.886338 ACTCGCAAAATAAAAGGAGAAAATCT 58.114 30.769 0.00 0.00 0.00 2.40
309 310 8.360390 ACTCGCAAAATAAAAGGAGAAAATCTT 58.640 29.630 0.00 0.00 0.00 2.40
310 311 8.742554 TCGCAAAATAAAAGGAGAAAATCTTC 57.257 30.769 0.00 0.00 0.00 2.87
311 312 8.576442 TCGCAAAATAAAAGGAGAAAATCTTCT 58.424 29.630 0.00 0.00 44.93 2.85
325 326 8.785329 AGAAAATCTTCTCCAGTGAACTATTC 57.215 34.615 0.00 0.00 37.31 1.75
326 327 7.826744 AGAAAATCTTCTCCAGTGAACTATTCC 59.173 37.037 0.00 0.00 37.31 3.01
327 328 6.882768 AATCTTCTCCAGTGAACTATTCCT 57.117 37.500 0.00 0.00 0.00 3.36
328 329 7.979786 AATCTTCTCCAGTGAACTATTCCTA 57.020 36.000 0.00 0.00 0.00 2.94
329 330 8.560124 AATCTTCTCCAGTGAACTATTCCTAT 57.440 34.615 0.00 0.00 0.00 2.57
330 331 7.353414 TCTTCTCCAGTGAACTATTCCTATG 57.647 40.000 0.00 0.00 0.00 2.23
331 332 6.897966 TCTTCTCCAGTGAACTATTCCTATGT 59.102 38.462 0.00 0.00 0.00 2.29
332 333 8.059461 TCTTCTCCAGTGAACTATTCCTATGTA 58.941 37.037 0.00 0.00 0.00 2.29
333 334 7.825331 TCTCCAGTGAACTATTCCTATGTAG 57.175 40.000 0.00 0.00 0.00 2.74
334 335 7.583625 TCTCCAGTGAACTATTCCTATGTAGA 58.416 38.462 0.00 0.00 0.00 2.59
335 336 7.502895 TCTCCAGTGAACTATTCCTATGTAGAC 59.497 40.741 0.00 0.00 0.00 2.59
336 337 6.550108 TCCAGTGAACTATTCCTATGTAGACC 59.450 42.308 0.00 0.00 0.00 3.85
337 338 6.439599 CAGTGAACTATTCCTATGTAGACCG 58.560 44.000 0.00 0.00 0.00 4.79
338 339 5.535406 AGTGAACTATTCCTATGTAGACCGG 59.465 44.000 0.00 0.00 0.00 5.28
339 340 4.831155 TGAACTATTCCTATGTAGACCGGG 59.169 45.833 6.32 0.00 0.00 5.73
340 341 3.775910 ACTATTCCTATGTAGACCGGGG 58.224 50.000 6.32 0.00 0.00 5.73
341 342 2.025636 ATTCCTATGTAGACCGGGGG 57.974 55.000 6.32 0.00 0.00 5.40
342 343 0.935942 TTCCTATGTAGACCGGGGGA 59.064 55.000 6.32 0.00 0.00 4.81
343 344 0.935942 TCCTATGTAGACCGGGGGAA 59.064 55.000 6.32 0.00 0.00 3.97
344 345 1.291637 TCCTATGTAGACCGGGGGAAA 59.708 52.381 6.32 0.00 0.00 3.13
345 346 2.121129 CCTATGTAGACCGGGGGAAAA 58.879 52.381 6.32 0.00 0.00 2.29
346 347 2.506644 CCTATGTAGACCGGGGGAAAAA 59.493 50.000 6.32 0.00 0.00 1.94
347 348 2.502142 ATGTAGACCGGGGGAAAAAC 57.498 50.000 6.32 0.00 0.00 2.43
348 349 0.401356 TGTAGACCGGGGGAAAAACC 59.599 55.000 6.32 0.00 38.08 3.27
482 484 2.044352 TCTCGCTCGGGTCATCCA 60.044 61.111 0.00 0.00 34.36 3.41
485 487 1.455773 TCGCTCGGGTCATCCATCT 60.456 57.895 0.00 0.00 34.36 2.90
486 488 1.006805 CGCTCGGGTCATCCATCTC 60.007 63.158 0.00 0.00 34.36 2.75
487 489 1.006805 GCTCGGGTCATCCATCTCG 60.007 63.158 0.00 0.00 34.36 4.04
523 525 1.687563 TCCTCACTCACTCACACGAA 58.312 50.000 0.00 0.00 0.00 3.85
524 526 1.337071 TCCTCACTCACTCACACGAAC 59.663 52.381 0.00 0.00 0.00 3.95
525 527 1.399572 CTCACTCACTCACACGAACG 58.600 55.000 0.00 0.00 0.00 3.95
526 528 1.002792 CTCACTCACTCACACGAACGA 60.003 52.381 0.14 0.00 0.00 3.85
592 594 2.046700 TCACCATTTCCCGTCGCC 60.047 61.111 0.00 0.00 0.00 5.54
667 677 5.105834 CACCTTTGCAGAAAGAGAGAAAG 57.894 43.478 0.00 0.00 41.12 2.62
680 690 0.112412 GAGAAAGGAAAGGCACCCCA 59.888 55.000 0.00 0.00 0.00 4.96
836 846 1.068921 GCTGCCTTCTCGATCTCCC 59.931 63.158 0.00 0.00 0.00 4.30
857 867 2.301738 CCCCCTTCCTGTCCTCCAC 61.302 68.421 0.00 0.00 0.00 4.02
870 880 1.394151 CTCCACCCCTCCCTCTCTT 59.606 63.158 0.00 0.00 0.00 2.85
871 881 0.252927 CTCCACCCCTCCCTCTCTTT 60.253 60.000 0.00 0.00 0.00 2.52
872 882 0.252742 TCCACCCCTCCCTCTCTTTC 60.253 60.000 0.00 0.00 0.00 2.62
873 883 0.252927 CCACCCCTCCCTCTCTTTCT 60.253 60.000 0.00 0.00 0.00 2.52
877 887 1.290732 CCCCTCCCTCTCTTTCTCTCT 59.709 57.143 0.00 0.00 0.00 3.10
954 1474 4.774503 GCTGGGCGAGCTGAGCTT 62.775 66.667 14.72 0.00 45.21 3.74
956 1476 1.520342 CTGGGCGAGCTGAGCTTAC 60.520 63.158 9.00 3.48 39.88 2.34
1008 1538 1.888638 CGCCATCGCCATGTCATCA 60.889 57.895 0.00 0.00 0.00 3.07
1227 1763 1.041447 TGCCCTTCTACTCCTACGCC 61.041 60.000 0.00 0.00 0.00 5.68
1701 2240 8.948631 TGGAAGAAGTGAGTTATCAATCATAC 57.051 34.615 0.00 0.00 37.14 2.39
1702 2241 8.762645 TGGAAGAAGTGAGTTATCAATCATACT 58.237 33.333 0.00 0.00 37.14 2.12
1969 2511 3.951037 TCACTTATTGTTGCACTGTTGGT 59.049 39.130 0.00 0.00 0.00 3.67
1978 2520 1.889170 TGCACTGTTGGTGTTGAACAA 59.111 42.857 0.00 0.00 46.86 2.83
2040 2582 5.343307 TGATCTGGAGTCGATGATCAAAA 57.657 39.130 14.70 0.00 41.25 2.44
2057 2599 4.980590 TCAAAAAGTTGCACACAGTAGTG 58.019 39.130 0.00 0.00 41.91 2.74
2235 2778 2.012673 CATGTAGTCCCAGCTTCTTGC 58.987 52.381 0.00 0.00 43.29 4.01
2353 2896 4.747108 GTGACATATGATCTGGTAGTGTGC 59.253 45.833 10.38 0.00 0.00 4.57
2632 3197 4.870426 ACGATGTCGAAGCATTTCAAGTAT 59.130 37.500 9.67 0.00 43.02 2.12
2635 3200 6.561166 CGATGTCGAAGCATTTCAAGTATCTC 60.561 42.308 0.00 0.00 43.02 2.75
2698 3263 2.034221 GCCGGGAAAGACAGCCTT 59.966 61.111 2.18 0.00 36.47 4.35
2726 3291 1.002624 GACATGGCCAACTTCGGGA 60.003 57.895 10.96 0.00 0.00 5.14
2767 3332 0.393808 TTATGAGGGGAAGCAACGCC 60.394 55.000 7.89 7.89 42.13 5.68
2771 3336 2.909965 GGGGAAGCAACGCCAACA 60.910 61.111 10.42 0.00 41.56 3.33
2803 3368 2.573083 CCACAACATTTGGCGGCCT 61.573 57.895 21.46 0.00 34.12 5.19
2987 3553 9.715121 ATTCCGTAATACTTGTCTTTGAACTAA 57.285 29.630 0.00 0.00 0.00 2.24
3028 3594 3.320256 GGAACGGAGGGAGTAATTACGAT 59.680 47.826 9.91 0.00 0.00 3.73
3073 3639 4.207019 GCTGGCAAATGCGAATGTTTATAC 59.793 41.667 0.00 0.00 43.26 1.47
3159 3725 3.510388 TTCCTTCTAGTGTGAGCATCG 57.490 47.619 0.00 0.00 38.61 3.84
3299 3866 2.083774 TGTCCACTGAAATTGCGGATC 58.916 47.619 0.00 0.00 0.00 3.36
3300 3867 1.401905 GTCCACTGAAATTGCGGATCC 59.598 52.381 0.00 0.00 0.00 3.36
3301 3868 1.281867 TCCACTGAAATTGCGGATCCT 59.718 47.619 10.75 0.00 0.00 3.24
3302 3869 2.094675 CCACTGAAATTGCGGATCCTT 58.905 47.619 10.75 0.00 0.00 3.36
3303 3870 2.098117 CCACTGAAATTGCGGATCCTTC 59.902 50.000 10.75 6.95 0.00 3.46
3410 4003 4.678742 GGTACCGTATGATAAGAAGAACGC 59.321 45.833 0.00 0.00 0.00 4.84
3442 4036 4.550076 TTAAATGCATGTCTTTTGGGGG 57.450 40.909 0.00 0.00 0.00 5.40
3609 4203 4.498177 GGTCAATTCTCGTCGATCTGATGA 60.498 45.833 0.00 8.50 40.34 2.92
3655 4249 7.455641 AATAACATATACTCCCTCTGTCTCG 57.544 40.000 0.00 0.00 0.00 4.04
3877 4650 1.873698 TGCCGGTTTGAGTGAGTTAC 58.126 50.000 1.90 0.00 0.00 2.50
3878 4651 1.414919 TGCCGGTTTGAGTGAGTTACT 59.585 47.619 1.90 0.00 44.02 2.24
3879 4652 1.798813 GCCGGTTTGAGTGAGTTACTG 59.201 52.381 1.90 0.00 40.53 2.74
3880 4653 2.805657 GCCGGTTTGAGTGAGTTACTGT 60.806 50.000 1.90 0.00 40.53 3.55
3881 4654 3.463944 CCGGTTTGAGTGAGTTACTGTT 58.536 45.455 0.00 0.00 40.53 3.16
3882 4655 3.493503 CCGGTTTGAGTGAGTTACTGTTC 59.506 47.826 0.00 0.00 40.53 3.18
4060 4857 7.908453 AGCTTCTAGTTAACCTGTAAAGATGT 58.092 34.615 0.88 0.00 0.00 3.06
4065 4862 6.560253 AGTTAACCTGTAAAGATGTTGCTG 57.440 37.500 0.88 0.00 0.00 4.41
4066 4863 3.923017 AACCTGTAAAGATGTTGCTGC 57.077 42.857 0.00 0.00 0.00 5.25
4067 4864 2.162681 ACCTGTAAAGATGTTGCTGCC 58.837 47.619 0.00 0.00 0.00 4.85
4068 4865 2.224867 ACCTGTAAAGATGTTGCTGCCT 60.225 45.455 0.00 0.00 0.00 4.75
4069 4866 2.163010 CCTGTAAAGATGTTGCTGCCTG 59.837 50.000 0.00 0.00 0.00 4.85
4095 4914 4.498009 CGAATGGTTCTGTATTTGCCATCC 60.498 45.833 0.00 0.00 38.82 3.51
4155 4974 3.236816 CGACAAGCAAATGTTGGCTAAG 58.763 45.455 0.00 0.00 40.01 2.18
4262 5087 3.988976 AGCAAGATCTCTTAGCACCAA 57.011 42.857 0.00 0.00 34.63 3.67
4497 5322 2.337532 CAGCAAACCCAGCAGCAC 59.662 61.111 0.00 0.00 0.00 4.40
4533 5358 1.762460 GAGGCCCTCCGATCCTTCA 60.762 63.158 0.00 0.00 37.47 3.02
4704 5535 3.740397 CACCACCACGGCAGCATG 61.740 66.667 0.00 0.00 39.03 4.06
4725 5556 2.361610 CTTTCGCACCCCCAGCAT 60.362 61.111 0.00 0.00 0.00 3.79
4812 5652 3.506059 CTACATCGCCGAGCCCCTG 62.506 68.421 0.00 0.00 0.00 4.45
4953 5793 2.200067 CATCTGCTCCATGACTTCGTC 58.800 52.381 0.00 0.00 0.00 4.20
5124 5967 2.526304 TTGGTACATATGCCTCTCGC 57.474 50.000 1.58 0.00 39.30 5.03
5129 5972 0.598562 ACATATGCCTCTCGCGTAGG 59.401 55.000 21.11 21.11 44.53 3.18
5170 6013 0.613260 TGACACAGTGGGGCTACATC 59.387 55.000 0.00 0.00 0.00 3.06
5195 6038 0.727970 CATGCAGTGCAGAGAGAAGC 59.272 55.000 24.20 0.00 43.65 3.86
5280 6124 4.072839 GCTGCCTTATTAACCCTGTATCC 58.927 47.826 0.00 0.00 0.00 2.59
5281 6125 4.652822 CTGCCTTATTAACCCTGTATCCC 58.347 47.826 0.00 0.00 0.00 3.85
5282 6126 4.048600 TGCCTTATTAACCCTGTATCCCA 58.951 43.478 0.00 0.00 0.00 4.37
5383 6227 5.511234 AGCTAGGCTGCAAATTTTATCTG 57.489 39.130 0.50 0.00 37.57 2.90
5484 6333 7.231519 CACTAGAATATGACTGTGGACTGGATA 59.768 40.741 0.00 0.00 0.00 2.59
5485 6334 6.662865 AGAATATGACTGTGGACTGGATAG 57.337 41.667 0.00 0.00 0.00 2.08
5486 6335 6.377080 AGAATATGACTGTGGACTGGATAGA 58.623 40.000 0.00 0.00 0.00 1.98
5487 6336 7.015680 AGAATATGACTGTGGACTGGATAGAT 58.984 38.462 0.00 0.00 0.00 1.98
5574 6423 0.112412 GAAATCAGGTGGTGGGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
5643 6493 4.771590 TCTGGACAAGACATGATTTTGC 57.228 40.909 0.00 0.00 0.00 3.68
5644 6494 3.507233 TCTGGACAAGACATGATTTTGCC 59.493 43.478 0.00 7.25 0.00 4.52
5645 6495 2.562298 TGGACAAGACATGATTTTGCCC 59.438 45.455 0.00 3.50 0.00 5.36
5646 6496 2.094026 GGACAAGACATGATTTTGCCCC 60.094 50.000 0.00 2.91 0.00 5.80
5647 6497 2.562298 GACAAGACATGATTTTGCCCCA 59.438 45.455 0.00 0.00 0.00 4.96
5648 6498 2.564062 ACAAGACATGATTTTGCCCCAG 59.436 45.455 0.00 0.00 0.00 4.45
5649 6499 1.188863 AGACATGATTTTGCCCCAGC 58.811 50.000 0.00 0.00 40.48 4.85
5650 6500 1.188863 GACATGATTTTGCCCCAGCT 58.811 50.000 0.00 0.00 40.80 4.24
5651 6501 0.899720 ACATGATTTTGCCCCAGCTG 59.100 50.000 6.78 6.78 40.80 4.24
5652 6502 0.461339 CATGATTTTGCCCCAGCTGC 60.461 55.000 8.66 0.00 40.80 5.25
5653 6503 0.616679 ATGATTTTGCCCCAGCTGCT 60.617 50.000 8.66 0.00 40.80 4.24
5654 6504 1.217244 GATTTTGCCCCAGCTGCTG 59.783 57.895 22.44 22.44 40.80 4.41
5662 6512 1.580845 CCCCAGCTGCTGAACTTTCG 61.581 60.000 30.10 11.61 32.44 3.46
5698 6548 3.482436 CTGTTAACCACCCTAACAGCAA 58.518 45.455 2.48 0.00 45.46 3.91
5739 6603 2.688446 CCTACTGTACGCTCCTTGATCA 59.312 50.000 0.00 0.00 0.00 2.92
5741 6605 2.960819 ACTGTACGCTCCTTGATCAAC 58.039 47.619 3.38 0.00 0.00 3.18
5776 6640 1.301623 CGTTTACTGGCCATGGGGA 59.698 57.895 15.13 0.00 35.59 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.867097 GGAGGGAGTATGTCATAGTAACAAATA 58.133 37.037 0.00 0.00 0.00 1.40
2 3 7.471539 CGGAGGGAGTATGTCATAGTAACAAAT 60.472 40.741 0.00 0.00 0.00 2.32
4 5 5.301045 CGGAGGGAGTATGTCATAGTAACAA 59.699 44.000 0.00 0.00 0.00 2.83
5 6 4.825634 CGGAGGGAGTATGTCATAGTAACA 59.174 45.833 0.00 0.00 0.00 2.41
7 8 5.057843 ACGGAGGGAGTATGTCATAGTAA 57.942 43.478 0.00 0.00 0.00 2.24
8 9 4.506271 GGACGGAGGGAGTATGTCATAGTA 60.506 50.000 0.00 0.00 0.00 1.82
10 11 2.820787 GGACGGAGGGAGTATGTCATAG 59.179 54.545 0.00 0.00 0.00 2.23
11 12 2.490351 GGGACGGAGGGAGTATGTCATA 60.490 54.545 0.00 0.00 0.00 2.15
13 14 0.396695 GGGACGGAGGGAGTATGTCA 60.397 60.000 0.00 0.00 0.00 3.58
14 15 0.396695 TGGGACGGAGGGAGTATGTC 60.397 60.000 0.00 0.00 0.00 3.06
15 16 0.042131 TTGGGACGGAGGGAGTATGT 59.958 55.000 0.00 0.00 0.00 2.29
17 18 0.635009 TCTTGGGACGGAGGGAGTAT 59.365 55.000 0.00 0.00 0.00 2.12
18 19 0.635009 ATCTTGGGACGGAGGGAGTA 59.365 55.000 0.00 0.00 0.00 2.59
19 20 0.635009 TATCTTGGGACGGAGGGAGT 59.365 55.000 0.00 0.00 0.00 3.85
20 21 1.689273 CTTATCTTGGGACGGAGGGAG 59.311 57.143 0.00 0.00 0.00 4.30
21 22 1.007963 ACTTATCTTGGGACGGAGGGA 59.992 52.381 0.00 0.00 0.00 4.20
22 23 1.139058 CACTTATCTTGGGACGGAGGG 59.861 57.143 0.00 0.00 0.00 4.30
23 24 1.831736 ACACTTATCTTGGGACGGAGG 59.168 52.381 0.00 0.00 0.00 4.30
24 25 2.761208 AGACACTTATCTTGGGACGGAG 59.239 50.000 0.00 0.00 0.00 4.63
25 26 2.758979 GAGACACTTATCTTGGGACGGA 59.241 50.000 0.00 0.00 0.00 4.69
26 27 2.496070 TGAGACACTTATCTTGGGACGG 59.504 50.000 0.00 0.00 0.00 4.79
27 28 3.868757 TGAGACACTTATCTTGGGACG 57.131 47.619 0.00 0.00 0.00 4.79
28 29 3.935828 GCTTGAGACACTTATCTTGGGAC 59.064 47.826 0.00 0.00 0.00 4.46
29 30 3.840666 AGCTTGAGACACTTATCTTGGGA 59.159 43.478 0.00 0.00 0.00 4.37
30 31 4.213564 AGCTTGAGACACTTATCTTGGG 57.786 45.455 0.00 0.00 0.00 4.12
31 32 6.402222 ACTAAGCTTGAGACACTTATCTTGG 58.598 40.000 9.86 0.00 0.00 3.61
32 33 8.029522 TGTACTAAGCTTGAGACACTTATCTTG 58.970 37.037 9.86 0.00 0.00 3.02
33 34 8.123639 TGTACTAAGCTTGAGACACTTATCTT 57.876 34.615 9.86 0.00 0.00 2.40
34 35 7.704578 TGTACTAAGCTTGAGACACTTATCT 57.295 36.000 9.86 0.00 0.00 1.98
35 36 8.758633 TTTGTACTAAGCTTGAGACACTTATC 57.241 34.615 9.86 0.00 0.00 1.75
36 37 9.726438 AATTTGTACTAAGCTTGAGACACTTAT 57.274 29.630 9.86 1.72 0.00 1.73
37 38 9.555727 AAATTTGTACTAAGCTTGAGACACTTA 57.444 29.630 9.86 0.00 0.00 2.24
38 39 8.451908 AAATTTGTACTAAGCTTGAGACACTT 57.548 30.769 9.86 3.97 0.00 3.16
39 40 9.726438 ATAAATTTGTACTAAGCTTGAGACACT 57.274 29.630 9.86 0.00 0.00 3.55
85 86 9.944663 CACAAGCTAAACAAAATAAGTGTCTTA 57.055 29.630 0.00 0.00 0.00 2.10
86 87 7.920682 CCACAAGCTAAACAAAATAAGTGTCTT 59.079 33.333 0.00 0.00 0.00 3.01
87 88 7.425606 CCACAAGCTAAACAAAATAAGTGTCT 58.574 34.615 0.00 0.00 0.00 3.41
88 89 6.640907 CCCACAAGCTAAACAAAATAAGTGTC 59.359 38.462 0.00 0.00 0.00 3.67
89 90 6.322712 TCCCACAAGCTAAACAAAATAAGTGT 59.677 34.615 0.00 0.00 0.00 3.55
90 91 6.640907 GTCCCACAAGCTAAACAAAATAAGTG 59.359 38.462 0.00 0.00 0.00 3.16
91 92 6.322712 TGTCCCACAAGCTAAACAAAATAAGT 59.677 34.615 0.00 0.00 0.00 2.24
92 93 6.744112 TGTCCCACAAGCTAAACAAAATAAG 58.256 36.000 0.00 0.00 0.00 1.73
93 94 6.716934 TGTCCCACAAGCTAAACAAAATAA 57.283 33.333 0.00 0.00 0.00 1.40
94 95 6.909550 ATGTCCCACAAGCTAAACAAAATA 57.090 33.333 0.00 0.00 0.00 1.40
95 96 5.806654 ATGTCCCACAAGCTAAACAAAAT 57.193 34.783 0.00 0.00 0.00 1.82
96 97 6.716934 TTATGTCCCACAAGCTAAACAAAA 57.283 33.333 0.00 0.00 0.00 2.44
97 98 6.716934 TTTATGTCCCACAAGCTAAACAAA 57.283 33.333 0.00 0.00 0.00 2.83
98 99 6.909550 ATTTATGTCCCACAAGCTAAACAA 57.090 33.333 0.00 0.00 0.00 2.83
99 100 6.909550 AATTTATGTCCCACAAGCTAAACA 57.090 33.333 0.00 0.00 0.00 2.83
100 101 7.375053 TGAAATTTATGTCCCACAAGCTAAAC 58.625 34.615 0.00 0.00 0.00 2.01
101 102 7.531857 TGAAATTTATGTCCCACAAGCTAAA 57.468 32.000 0.00 0.00 0.00 1.85
102 103 7.531857 TTGAAATTTATGTCCCACAAGCTAA 57.468 32.000 0.00 0.00 0.00 3.09
103 104 7.363705 CCATTGAAATTTATGTCCCACAAGCTA 60.364 37.037 0.00 0.00 0.00 3.32
104 105 6.400568 CATTGAAATTTATGTCCCACAAGCT 58.599 36.000 0.00 0.00 0.00 3.74
105 106 5.581874 CCATTGAAATTTATGTCCCACAAGC 59.418 40.000 0.00 0.00 0.00 4.01
106 107 6.934056 TCCATTGAAATTTATGTCCCACAAG 58.066 36.000 0.00 0.00 0.00 3.16
107 108 6.924913 TCCATTGAAATTTATGTCCCACAA 57.075 33.333 0.00 0.00 0.00 3.33
108 109 6.924913 TTCCATTGAAATTTATGTCCCACA 57.075 33.333 0.00 0.00 0.00 4.17
122 123 9.757227 AGATTTAACAAAACGATTTCCATTGAA 57.243 25.926 0.00 0.00 0.00 2.69
159 160 8.979574 CAGACGACTTAGACTTAAACAAAATCT 58.020 33.333 0.00 0.00 0.00 2.40
160 161 8.975439 TCAGACGACTTAGACTTAAACAAAATC 58.025 33.333 0.00 0.00 0.00 2.17
161 162 8.882415 TCAGACGACTTAGACTTAAACAAAAT 57.118 30.769 0.00 0.00 0.00 1.82
162 163 8.882415 ATCAGACGACTTAGACTTAAACAAAA 57.118 30.769 0.00 0.00 0.00 2.44
164 165 9.784680 GATATCAGACGACTTAGACTTAAACAA 57.215 33.333 0.00 0.00 0.00 2.83
165 166 9.175312 AGATATCAGACGACTTAGACTTAAACA 57.825 33.333 5.32 0.00 0.00 2.83
171 172 9.344772 ACATAAAGATATCAGACGACTTAGACT 57.655 33.333 5.32 0.00 0.00 3.24
172 173 9.388346 CACATAAAGATATCAGACGACTTAGAC 57.612 37.037 5.32 0.00 0.00 2.59
173 174 8.568794 CCACATAAAGATATCAGACGACTTAGA 58.431 37.037 5.32 0.00 0.00 2.10
174 175 8.568794 TCCACATAAAGATATCAGACGACTTAG 58.431 37.037 5.32 0.00 0.00 2.18
175 176 8.459911 TCCACATAAAGATATCAGACGACTTA 57.540 34.615 5.32 0.00 0.00 2.24
176 177 7.068839 ACTCCACATAAAGATATCAGACGACTT 59.931 37.037 5.32 0.00 0.00 3.01
177 178 6.547880 ACTCCACATAAAGATATCAGACGACT 59.452 38.462 5.32 0.00 0.00 4.18
178 179 6.740110 ACTCCACATAAAGATATCAGACGAC 58.260 40.000 5.32 0.00 0.00 4.34
179 180 6.961360 ACTCCACATAAAGATATCAGACGA 57.039 37.500 5.32 0.00 0.00 4.20
180 181 8.331022 CAAAACTCCACATAAAGATATCAGACG 58.669 37.037 5.32 0.00 0.00 4.18
181 182 9.167311 ACAAAACTCCACATAAAGATATCAGAC 57.833 33.333 5.32 0.00 0.00 3.51
182 183 9.739276 AACAAAACTCCACATAAAGATATCAGA 57.261 29.630 5.32 0.00 0.00 3.27
183 184 9.778993 CAACAAAACTCCACATAAAGATATCAG 57.221 33.333 5.32 0.00 0.00 2.90
184 185 8.739039 CCAACAAAACTCCACATAAAGATATCA 58.261 33.333 5.32 0.00 0.00 2.15
185 186 8.190784 CCCAACAAAACTCCACATAAAGATATC 58.809 37.037 0.00 0.00 0.00 1.63
186 187 7.673926 ACCCAACAAAACTCCACATAAAGATAT 59.326 33.333 0.00 0.00 0.00 1.63
187 188 7.007723 ACCCAACAAAACTCCACATAAAGATA 58.992 34.615 0.00 0.00 0.00 1.98
188 189 5.838521 ACCCAACAAAACTCCACATAAAGAT 59.161 36.000 0.00 0.00 0.00 2.40
189 190 5.205056 ACCCAACAAAACTCCACATAAAGA 58.795 37.500 0.00 0.00 0.00 2.52
190 191 5.529581 ACCCAACAAAACTCCACATAAAG 57.470 39.130 0.00 0.00 0.00 1.85
191 192 5.892119 TGTACCCAACAAAACTCCACATAAA 59.108 36.000 0.00 0.00 34.29 1.40
192 193 5.299782 GTGTACCCAACAAAACTCCACATAA 59.700 40.000 0.00 0.00 40.63 1.90
193 194 4.822896 GTGTACCCAACAAAACTCCACATA 59.177 41.667 0.00 0.00 40.63 2.29
194 195 3.634910 GTGTACCCAACAAAACTCCACAT 59.365 43.478 0.00 0.00 40.63 3.21
195 196 3.018149 GTGTACCCAACAAAACTCCACA 58.982 45.455 0.00 0.00 40.63 4.17
196 197 3.018149 TGTGTACCCAACAAAACTCCAC 58.982 45.455 0.00 0.00 40.63 4.02
197 198 3.018149 GTGTGTACCCAACAAAACTCCA 58.982 45.455 0.00 0.00 40.63 3.86
198 199 2.359848 GGTGTGTACCCAACAAAACTCC 59.640 50.000 0.00 0.00 40.63 3.85
199 200 2.032426 CGGTGTGTACCCAACAAAACTC 59.968 50.000 0.00 0.00 44.53 3.01
200 201 2.018515 CGGTGTGTACCCAACAAAACT 58.981 47.619 0.00 0.00 44.53 2.66
201 202 2.015587 TCGGTGTGTACCCAACAAAAC 58.984 47.619 0.00 0.00 44.53 2.43
202 203 2.015587 GTCGGTGTGTACCCAACAAAA 58.984 47.619 0.00 0.00 44.53 2.44
203 204 1.065636 TGTCGGTGTGTACCCAACAAA 60.066 47.619 0.00 0.00 44.53 2.83
204 205 0.540454 TGTCGGTGTGTACCCAACAA 59.460 50.000 0.00 0.00 44.53 2.83
205 206 0.540454 TTGTCGGTGTGTACCCAACA 59.460 50.000 0.00 0.00 44.53 3.33
206 207 0.939419 GTTGTCGGTGTGTACCCAAC 59.061 55.000 0.00 0.00 44.53 3.77
207 208 0.540454 TGTTGTCGGTGTGTACCCAA 59.460 50.000 0.00 0.00 44.53 4.12
208 209 0.105224 CTGTTGTCGGTGTGTACCCA 59.895 55.000 0.00 0.00 44.53 4.51
209 210 0.390124 TCTGTTGTCGGTGTGTACCC 59.610 55.000 0.00 0.00 44.53 3.69
210 211 2.228138 TTCTGTTGTCGGTGTGTACC 57.772 50.000 0.00 0.00 43.89 3.34
211 212 4.271533 TGATTTTCTGTTGTCGGTGTGTAC 59.728 41.667 0.00 0.00 0.00 2.90
212 213 4.443621 TGATTTTCTGTTGTCGGTGTGTA 58.556 39.130 0.00 0.00 0.00 2.90
213 214 3.275143 TGATTTTCTGTTGTCGGTGTGT 58.725 40.909 0.00 0.00 0.00 3.72
214 215 3.961477 TGATTTTCTGTTGTCGGTGTG 57.039 42.857 0.00 0.00 0.00 3.82
215 216 4.196193 TCTTGATTTTCTGTTGTCGGTGT 58.804 39.130 0.00 0.00 0.00 4.16
216 217 4.811555 TCTTGATTTTCTGTTGTCGGTG 57.188 40.909 0.00 0.00 0.00 4.94
217 218 7.504924 TTAATCTTGATTTTCTGTTGTCGGT 57.495 32.000 0.95 0.00 0.00 4.69
218 219 8.970691 ATTTAATCTTGATTTTCTGTTGTCGG 57.029 30.769 0.95 0.00 0.00 4.79
219 220 9.611284 TGATTTAATCTTGATTTTCTGTTGTCG 57.389 29.630 6.50 0.00 0.00 4.35
234 235 6.878923 TGGTGTCGACAAGATGATTTAATCTT 59.121 34.615 21.95 0.00 45.69 2.40
235 236 6.406370 TGGTGTCGACAAGATGATTTAATCT 58.594 36.000 21.95 0.00 38.59 2.40
236 237 6.662414 TGGTGTCGACAAGATGATTTAATC 57.338 37.500 21.95 2.42 0.00 1.75
237 238 7.336679 TCAATGGTGTCGACAAGATGATTTAAT 59.663 33.333 21.95 0.00 0.00 1.40
238 239 6.652900 TCAATGGTGTCGACAAGATGATTTAA 59.347 34.615 21.95 2.77 0.00 1.52
239 240 6.169800 TCAATGGTGTCGACAAGATGATTTA 58.830 36.000 21.95 3.37 0.00 1.40
240 241 5.003160 TCAATGGTGTCGACAAGATGATTT 58.997 37.500 21.95 4.70 0.00 2.17
241 242 4.578871 TCAATGGTGTCGACAAGATGATT 58.421 39.130 21.95 10.81 0.00 2.57
242 243 4.206477 TCAATGGTGTCGACAAGATGAT 57.794 40.909 21.95 5.07 0.00 2.45
243 244 3.676291 TCAATGGTGTCGACAAGATGA 57.324 42.857 21.95 18.29 0.00 2.92
244 245 5.754890 TCATATCAATGGTGTCGACAAGATG 59.245 40.000 21.95 15.88 33.61 2.90
245 246 5.917462 TCATATCAATGGTGTCGACAAGAT 58.083 37.500 21.95 18.76 33.61 2.40
246 247 5.127031 TCTCATATCAATGGTGTCGACAAGA 59.873 40.000 21.95 11.76 33.61 3.02
247 248 5.351458 TCTCATATCAATGGTGTCGACAAG 58.649 41.667 21.95 9.44 33.61 3.16
248 249 5.337578 TCTCATATCAATGGTGTCGACAA 57.662 39.130 21.95 6.03 33.61 3.18
249 250 5.337578 TTCTCATATCAATGGTGTCGACA 57.662 39.130 15.76 15.76 33.61 4.35
250 251 6.662414 TTTTCTCATATCAATGGTGTCGAC 57.338 37.500 9.11 9.11 33.61 4.20
251 252 7.275183 AGATTTTCTCATATCAATGGTGTCGA 58.725 34.615 0.00 0.00 33.61 4.20
252 253 7.488187 AGATTTTCTCATATCAATGGTGTCG 57.512 36.000 0.00 0.00 33.61 4.35
253 254 8.896744 TGAAGATTTTCTCATATCAATGGTGTC 58.103 33.333 0.00 0.00 34.31 3.67
254 255 8.812513 TGAAGATTTTCTCATATCAATGGTGT 57.187 30.769 0.00 0.00 34.31 4.16
261 262 9.038803 CGAGTCATTGAAGATTTTCTCATATCA 57.961 33.333 0.00 0.00 34.31 2.15
262 263 8.008844 GCGAGTCATTGAAGATTTTCTCATATC 58.991 37.037 0.00 0.00 34.31 1.63
263 264 7.496920 TGCGAGTCATTGAAGATTTTCTCATAT 59.503 33.333 0.00 0.00 34.31 1.78
264 265 6.818142 TGCGAGTCATTGAAGATTTTCTCATA 59.182 34.615 0.00 0.00 34.31 2.15
265 266 5.645067 TGCGAGTCATTGAAGATTTTCTCAT 59.355 36.000 0.00 0.00 34.31 2.90
266 267 4.996758 TGCGAGTCATTGAAGATTTTCTCA 59.003 37.500 0.00 0.00 34.31 3.27
267 268 5.536554 TGCGAGTCATTGAAGATTTTCTC 57.463 39.130 0.00 0.00 34.31 2.87
268 269 5.947228 TTGCGAGTCATTGAAGATTTTCT 57.053 34.783 0.00 0.00 34.31 2.52
269 270 6.991485 TTTTGCGAGTCATTGAAGATTTTC 57.009 33.333 0.00 0.00 0.00 2.29
270 271 9.474920 TTTATTTTGCGAGTCATTGAAGATTTT 57.525 25.926 0.00 0.00 0.00 1.82
271 272 9.474920 TTTTATTTTGCGAGTCATTGAAGATTT 57.525 25.926 0.00 0.00 0.00 2.17
272 273 9.132521 CTTTTATTTTGCGAGTCATTGAAGATT 57.867 29.630 0.00 0.00 0.00 2.40
273 274 7.756722 CCTTTTATTTTGCGAGTCATTGAAGAT 59.243 33.333 0.00 0.00 0.00 2.40
274 275 7.040755 TCCTTTTATTTTGCGAGTCATTGAAGA 60.041 33.333 0.00 0.00 0.00 2.87
275 276 7.083858 TCCTTTTATTTTGCGAGTCATTGAAG 58.916 34.615 0.00 0.00 0.00 3.02
276 277 6.976088 TCCTTTTATTTTGCGAGTCATTGAA 58.024 32.000 0.00 0.00 0.00 2.69
277 278 6.429692 TCTCCTTTTATTTTGCGAGTCATTGA 59.570 34.615 0.00 0.00 0.00 2.57
278 279 6.611381 TCTCCTTTTATTTTGCGAGTCATTG 58.389 36.000 0.00 0.00 0.00 2.82
279 280 6.817765 TCTCCTTTTATTTTGCGAGTCATT 57.182 33.333 0.00 0.00 0.00 2.57
280 281 6.817765 TTCTCCTTTTATTTTGCGAGTCAT 57.182 33.333 0.00 0.00 0.00 3.06
281 282 6.627395 TTTCTCCTTTTATTTTGCGAGTCA 57.373 33.333 0.00 0.00 0.00 3.41
282 283 8.023706 AGATTTTCTCCTTTTATTTTGCGAGTC 58.976 33.333 0.00 0.00 0.00 3.36
283 284 7.886338 AGATTTTCTCCTTTTATTTTGCGAGT 58.114 30.769 0.00 0.00 0.00 4.18
284 285 8.748380 AAGATTTTCTCCTTTTATTTTGCGAG 57.252 30.769 0.00 0.00 0.00 5.03
285 286 8.576442 AGAAGATTTTCTCCTTTTATTTTGCGA 58.424 29.630 0.00 0.00 39.46 5.10
286 287 8.748380 AGAAGATTTTCTCCTTTTATTTTGCG 57.252 30.769 0.00 0.00 39.46 4.85
300 301 7.826744 GGAATAGTTCACTGGAGAAGATTTTCT 59.173 37.037 0.00 0.00 46.22 2.52
301 302 7.826744 AGGAATAGTTCACTGGAGAAGATTTTC 59.173 37.037 0.00 0.00 0.00 2.29
302 303 7.694093 AGGAATAGTTCACTGGAGAAGATTTT 58.306 34.615 0.00 0.00 0.00 1.82
303 304 7.264294 AGGAATAGTTCACTGGAGAAGATTT 57.736 36.000 0.00 0.00 0.00 2.17
304 305 6.882768 AGGAATAGTTCACTGGAGAAGATT 57.117 37.500 0.00 0.00 0.00 2.40
305 306 7.566879 ACATAGGAATAGTTCACTGGAGAAGAT 59.433 37.037 0.00 0.00 0.00 2.40
306 307 6.897966 ACATAGGAATAGTTCACTGGAGAAGA 59.102 38.462 0.00 0.00 0.00 2.87
307 308 7.118496 ACATAGGAATAGTTCACTGGAGAAG 57.882 40.000 0.00 0.00 0.00 2.85
308 309 8.059461 TCTACATAGGAATAGTTCACTGGAGAA 58.941 37.037 0.00 0.00 0.00 2.87
309 310 7.502895 GTCTACATAGGAATAGTTCACTGGAGA 59.497 40.741 0.00 0.00 0.00 3.71
310 311 7.255660 GGTCTACATAGGAATAGTTCACTGGAG 60.256 44.444 0.00 0.00 0.00 3.86
311 312 6.550108 GGTCTACATAGGAATAGTTCACTGGA 59.450 42.308 0.00 0.00 0.00 3.86
312 313 6.515200 CGGTCTACATAGGAATAGTTCACTGG 60.515 46.154 0.00 0.00 0.00 4.00
313 314 6.439599 CGGTCTACATAGGAATAGTTCACTG 58.560 44.000 0.00 0.00 0.00 3.66
314 315 5.535406 CCGGTCTACATAGGAATAGTTCACT 59.465 44.000 0.00 0.00 0.00 3.41
315 316 5.278858 CCCGGTCTACATAGGAATAGTTCAC 60.279 48.000 0.00 0.00 0.00 3.18
316 317 4.831155 CCCGGTCTACATAGGAATAGTTCA 59.169 45.833 0.00 0.00 0.00 3.18
317 318 4.220163 CCCCGGTCTACATAGGAATAGTTC 59.780 50.000 0.00 0.00 0.00 3.01
318 319 4.158015 CCCCGGTCTACATAGGAATAGTT 58.842 47.826 0.00 0.00 0.00 2.24
319 320 3.501751 CCCCCGGTCTACATAGGAATAGT 60.502 52.174 0.00 0.00 0.00 2.12
320 321 3.097614 CCCCCGGTCTACATAGGAATAG 58.902 54.545 0.00 0.00 0.00 1.73
321 322 2.723563 TCCCCCGGTCTACATAGGAATA 59.276 50.000 0.00 0.00 0.00 1.75
322 323 1.506418 TCCCCCGGTCTACATAGGAAT 59.494 52.381 0.00 0.00 0.00 3.01
323 324 0.935942 TCCCCCGGTCTACATAGGAA 59.064 55.000 0.00 0.00 0.00 3.36
324 325 0.935942 TTCCCCCGGTCTACATAGGA 59.064 55.000 0.00 0.00 0.00 2.94
325 326 1.797320 TTTCCCCCGGTCTACATAGG 58.203 55.000 0.00 0.00 0.00 2.57
326 327 3.538591 GTTTTTCCCCCGGTCTACATAG 58.461 50.000 0.00 0.00 0.00 2.23
327 328 2.239402 GGTTTTTCCCCCGGTCTACATA 59.761 50.000 0.00 0.00 0.00 2.29
328 329 1.005097 GGTTTTTCCCCCGGTCTACAT 59.995 52.381 0.00 0.00 0.00 2.29
329 330 0.401356 GGTTTTTCCCCCGGTCTACA 59.599 55.000 0.00 0.00 0.00 2.74
330 331 3.254629 GGTTTTTCCCCCGGTCTAC 57.745 57.895 0.00 0.00 0.00 2.59
340 341 2.911484 GCGGTCCGTGGGTTTTTCC 61.911 63.158 13.94 0.00 0.00 3.13
341 342 1.848932 GAGCGGTCCGTGGGTTTTTC 61.849 60.000 13.94 0.00 0.00 2.29
342 343 1.895231 GAGCGGTCCGTGGGTTTTT 60.895 57.895 13.94 0.00 0.00 1.94
343 344 2.281276 GAGCGGTCCGTGGGTTTT 60.281 61.111 13.94 0.00 0.00 2.43
344 345 4.324991 GGAGCGGTCCGTGGGTTT 62.325 66.667 19.39 0.00 31.37 3.27
376 378 0.963355 TGCCAGGTTTTATGGACGCC 60.963 55.000 0.00 0.00 40.51 5.68
377 379 0.451783 CTGCCAGGTTTTATGGACGC 59.548 55.000 0.00 0.00 40.51 5.19
378 380 2.009774 CTCTGCCAGGTTTTATGGACG 58.990 52.381 0.00 0.00 40.51 4.79
379 381 1.745653 GCTCTGCCAGGTTTTATGGAC 59.254 52.381 0.00 0.00 40.51 4.02
380 382 2.128771 GCTCTGCCAGGTTTTATGGA 57.871 50.000 0.00 0.00 40.51 3.41
415 417 3.415212 GGGTAGTGGGTTTTGTACTTCC 58.585 50.000 0.00 0.00 32.89 3.46
482 484 0.263172 AGGAGGTGGATGGACGAGAT 59.737 55.000 0.00 0.00 0.00 2.75
485 487 0.041238 AAGAGGAGGTGGATGGACGA 59.959 55.000 0.00 0.00 0.00 4.20
486 488 0.461961 GAAGAGGAGGTGGATGGACG 59.538 60.000 0.00 0.00 0.00 4.79
487 489 0.833949 GGAAGAGGAGGTGGATGGAC 59.166 60.000 0.00 0.00 0.00 4.02
523 525 2.936912 GCTGGTCTGGTCTGCTCGT 61.937 63.158 0.00 0.00 0.00 4.18
524 526 2.125753 GCTGGTCTGGTCTGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
525 527 1.375268 GTGCTGGTCTGGTCTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
526 528 2.746359 GTGCTGGTCTGGTCTGCT 59.254 61.111 0.00 0.00 0.00 4.24
592 594 3.157949 GGCGAAGGAGGGAGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
836 846 1.690985 GAGGACAGGAAGGGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
857 867 1.290732 AGAGAGAAAGAGAGGGAGGGG 59.709 57.143 0.00 0.00 0.00 4.79
870 880 3.853181 TGGAGAGAGTAAGGGAGAGAGAA 59.147 47.826 0.00 0.00 0.00 2.87
871 881 3.458118 CTGGAGAGAGTAAGGGAGAGAGA 59.542 52.174 0.00 0.00 0.00 3.10
872 882 3.435026 CCTGGAGAGAGTAAGGGAGAGAG 60.435 56.522 0.00 0.00 0.00 3.20
873 883 2.512056 CCTGGAGAGAGTAAGGGAGAGA 59.488 54.545 0.00 0.00 0.00 3.10
904 1424 0.247974 CGACGTAGCTCGGTTACCTG 60.248 60.000 0.00 0.00 44.69 4.00
907 1427 1.931612 CGCGACGTAGCTCGGTTAC 60.932 63.158 18.58 0.00 44.69 2.50
954 1474 3.495233 TGCGCGCGTACGTAGGTA 61.495 61.111 32.35 0.47 42.83 3.08
997 1527 2.515523 AGCGGCTGATGACATGGC 60.516 61.111 0.00 0.00 0.00 4.40
1047 1583 2.360726 TGGTGCTGCTGATGCTGG 60.361 61.111 0.00 0.00 40.48 4.85
1227 1763 1.423921 GAGTAGGAGGAGGAGGAGGAG 59.576 61.905 0.00 0.00 0.00 3.69
1701 2240 7.234577 AGAGAAGGGAATTTAGAGGCTACATAG 59.765 40.741 0.00 0.00 0.00 2.23
1702 2241 7.076446 AGAGAAGGGAATTTAGAGGCTACATA 58.924 38.462 0.00 0.00 0.00 2.29
1703 2242 5.908247 AGAGAAGGGAATTTAGAGGCTACAT 59.092 40.000 0.00 0.00 0.00 2.29
1705 2244 5.880164 AGAGAAGGGAATTTAGAGGCTAC 57.120 43.478 0.00 0.00 0.00 3.58
1706 2245 5.964477 TGAAGAGAAGGGAATTTAGAGGCTA 59.036 40.000 0.00 0.00 0.00 3.93
1969 2511 9.883142 AGACCAAAAGAAAATAATTGTTCAACA 57.117 25.926 0.00 0.00 0.00 3.33
2040 2582 2.710096 ACCACTACTGTGTGCAACTT 57.290 45.000 0.00 0.00 42.34 2.66
2057 2599 7.274250 GCTGTTCTAATTTCATGTTCATGAACC 59.726 37.037 30.66 16.20 39.95 3.62
2353 2896 4.441087 CGGATTATCGTGTGTAGATGTGTG 59.559 45.833 0.00 0.00 0.00 3.82
2632 3197 2.167281 GCTCTGTATGGTGCTCTTGAGA 59.833 50.000 1.30 0.00 0.00 3.27
2635 3200 1.065926 TGGCTCTGTATGGTGCTCTTG 60.066 52.381 0.00 0.00 0.00 3.02
2698 3263 1.304381 GGCCATGTCTTCCTTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
2749 3314 1.223487 GGCGTTGCTTCCCCTCATA 59.777 57.895 0.00 0.00 0.00 2.15
2767 3332 2.639286 GGCTGGCTGAACGTGTTG 59.361 61.111 0.00 0.00 0.00 3.33
2771 3336 4.643387 GTGGGGCTGGCTGAACGT 62.643 66.667 0.00 0.00 0.00 3.99
2887 3452 6.260936 ACACGAAATCAAATATGATGGAGGAC 59.739 38.462 0.00 0.00 45.60 3.85
2987 3553 6.094881 CCGTTCCATAATACTTGTCATGGTTT 59.905 38.462 0.00 0.00 39.21 3.27
2993 3559 4.141801 CCCTCCGTTCCATAATACTTGTCA 60.142 45.833 0.00 0.00 0.00 3.58
3028 3594 3.371034 TGCAGGTACAGCTAAGATACCA 58.629 45.455 14.65 0.00 43.00 3.25
3159 3725 3.574396 TCCCATGTCTCGGATCTATGAAC 59.426 47.826 0.00 0.00 0.00 3.18
3249 3815 8.192110 GGTGCCCACGAAAATAAGATTTATAAA 58.808 33.333 0.00 0.00 0.00 1.40
3299 3866 5.143376 TCTCCTGTTAGTTTTACGGAAGG 57.857 43.478 0.00 0.00 0.00 3.46
3300 3867 7.307811 CCTTTTCTCCTGTTAGTTTTACGGAAG 60.308 40.741 0.00 0.00 0.00 3.46
3301 3868 6.484308 CCTTTTCTCCTGTTAGTTTTACGGAA 59.516 38.462 0.00 0.00 0.00 4.30
3302 3869 5.993441 CCTTTTCTCCTGTTAGTTTTACGGA 59.007 40.000 0.00 0.00 0.00 4.69
3303 3870 5.993441 TCCTTTTCTCCTGTTAGTTTTACGG 59.007 40.000 0.00 0.00 0.00 4.02
3307 3874 9.599866 CAAAATTCCTTTTCTCCTGTTAGTTTT 57.400 29.630 0.00 0.00 32.21 2.43
3309 3876 8.306313 ACAAAATTCCTTTTCTCCTGTTAGTT 57.694 30.769 0.00 0.00 32.21 2.24
3310 3877 7.898014 ACAAAATTCCTTTTCTCCTGTTAGT 57.102 32.000 0.00 0.00 32.21 2.24
3361 3953 3.125487 CGACAGTCGACACAGATCTAGTT 59.875 47.826 18.63 0.00 43.74 2.24
3442 4036 2.043953 GGGACCCATGCTGGAACC 60.044 66.667 5.33 6.47 40.96 3.62
3443 4037 1.678970 GTGGGACCCATGCTGGAAC 60.679 63.158 18.51 0.00 40.96 3.62
3447 4041 0.251297 TTCAAGTGGGACCCATGCTG 60.251 55.000 18.51 14.17 35.28 4.41
3609 4203 2.089980 GCAGTGCAGTCTCCATCAAAT 58.910 47.619 11.09 0.00 0.00 2.32
3674 4268 3.111838 CGTCTCATCTCATCTTCGGTTG 58.888 50.000 0.00 0.00 0.00 3.77
3675 4269 2.099921 CCGTCTCATCTCATCTTCGGTT 59.900 50.000 0.00 0.00 33.39 4.44
3841 4614 3.500982 CGGCATTTTATGAACACAGGTG 58.499 45.455 0.00 0.00 0.00 4.00
3877 4650 6.808008 ATCACATTGTAAACTCAGGAACAG 57.192 37.500 0.00 0.00 0.00 3.16
3878 4651 7.581213 AAATCACATTGTAAACTCAGGAACA 57.419 32.000 0.00 0.00 0.00 3.18
3879 4652 8.871686 AAAAATCACATTGTAAACTCAGGAAC 57.128 30.769 0.00 0.00 0.00 3.62
3880 4653 8.141268 GGAAAAATCACATTGTAAACTCAGGAA 58.859 33.333 0.00 0.00 0.00 3.36
3881 4654 7.505585 AGGAAAAATCACATTGTAAACTCAGGA 59.494 33.333 0.00 0.00 0.00 3.86
3882 4655 7.661040 AGGAAAAATCACATTGTAAACTCAGG 58.339 34.615 0.00 0.00 0.00 3.86
4032 4825 7.088905 TCTTTACAGGTTAACTAGAAGCTTCG 58.911 38.462 20.43 10.11 34.99 3.79
4065 4862 2.044946 AGAACCATTCGGGCAGGC 60.045 61.111 0.00 0.00 42.05 4.85
4066 4863 0.251916 TACAGAACCATTCGGGCAGG 59.748 55.000 0.00 0.00 42.05 4.85
4067 4864 2.332063 ATACAGAACCATTCGGGCAG 57.668 50.000 0.00 0.00 42.05 4.85
4068 4865 2.752354 CAAATACAGAACCATTCGGGCA 59.248 45.455 0.00 0.00 42.05 5.36
4069 4866 2.479560 GCAAATACAGAACCATTCGGGC 60.480 50.000 0.00 0.00 42.05 6.13
4155 4974 0.246635 TCCTCGTTAAGCCTGTCTGC 59.753 55.000 0.00 0.00 0.00 4.26
4248 5073 3.641434 ATGTGCTTGGTGCTAAGAGAT 57.359 42.857 0.00 0.00 43.37 2.75
4533 5358 1.391157 TTTGCCCTTGCTGCGAGTTT 61.391 50.000 15.46 0.00 38.71 2.66
4704 5535 4.966787 TGGGGGTGCGAAAGTGCC 62.967 66.667 0.00 0.00 0.00 5.01
4710 5541 3.965258 ACATGCTGGGGGTGCGAA 61.965 61.111 0.00 0.00 0.00 4.70
4953 5793 2.073056 TGTTTGTTCATCGATCACCCG 58.927 47.619 0.00 0.00 0.00 5.28
5124 5967 1.524621 CAGCATTCCAGGGCCTACG 60.525 63.158 5.28 0.00 0.00 3.51
5129 5972 2.057137 TATTGACAGCATTCCAGGGC 57.943 50.000 0.00 0.00 0.00 5.19
5222 6066 4.003648 AGAACAAATAGGGAAGAACTGCG 58.996 43.478 0.00 0.00 0.00 5.18
5280 6124 0.734889 GCAAGTCGATCAATGGGTGG 59.265 55.000 0.00 0.00 0.00 4.61
5281 6125 1.452110 TGCAAGTCGATCAATGGGTG 58.548 50.000 0.00 0.00 0.00 4.61
5282 6126 2.425143 ATGCAAGTCGATCAATGGGT 57.575 45.000 0.00 0.00 0.00 4.51
5574 6423 5.106712 GGATGCAACAAGATCACTCGTTAAA 60.107 40.000 0.00 0.00 0.00 1.52
5622 6472 3.507233 GGCAAAATCATGTCTTGTCCAGA 59.493 43.478 0.00 0.00 0.00 3.86
5639 6489 2.198150 TTCAGCAGCTGGGGCAAA 59.802 55.556 22.62 5.97 41.70 3.68
5641 6491 2.645394 AAAGTTCAGCAGCTGGGGCA 62.645 55.000 22.62 0.00 41.70 5.36
5642 6492 1.871126 GAAAGTTCAGCAGCTGGGGC 61.871 60.000 22.62 12.31 39.06 5.80
5643 6493 1.580845 CGAAAGTTCAGCAGCTGGGG 61.581 60.000 22.62 0.00 31.51 4.96
5644 6494 1.871772 CGAAAGTTCAGCAGCTGGG 59.128 57.895 22.62 0.00 31.51 4.45
5645 6495 1.208614 GCGAAAGTTCAGCAGCTGG 59.791 57.895 22.62 5.41 31.51 4.85
5646 6496 0.110328 CAGCGAAAGTTCAGCAGCTG 60.110 55.000 17.10 17.10 44.51 4.24
5647 6497 1.233285 CCAGCGAAAGTTCAGCAGCT 61.233 55.000 0.00 0.00 35.06 4.24
5648 6498 1.208614 CCAGCGAAAGTTCAGCAGC 59.791 57.895 5.50 0.00 32.08 5.25
5649 6499 1.208614 GCCAGCGAAAGTTCAGCAG 59.791 57.895 5.50 0.00 32.08 4.24
5650 6500 0.890542 ATGCCAGCGAAAGTTCAGCA 60.891 50.000 5.50 0.00 32.08 4.41
5651 6501 0.179179 GATGCCAGCGAAAGTTCAGC 60.179 55.000 0.00 0.00 0.00 4.26
5652 6502 0.449388 GGATGCCAGCGAAAGTTCAG 59.551 55.000 0.00 0.00 0.00 3.02
5653 6503 0.036732 AGGATGCCAGCGAAAGTTCA 59.963 50.000 0.00 0.00 0.00 3.18
5654 6504 1.131315 GAAGGATGCCAGCGAAAGTTC 59.869 52.381 0.00 0.00 0.00 3.01
5662 6512 0.034670 AACAGAGGAAGGATGCCAGC 60.035 55.000 0.00 0.00 34.43 4.85
5695 6545 1.028868 GGATCAGCCCTGACAGTTGC 61.029 60.000 0.93 3.96 43.11 4.17
5698 6548 1.610673 ACGGATCAGCCCTGACAGT 60.611 57.895 0.93 0.00 43.11 3.55
5739 6603 0.584876 GGCGAGTTGTTTAGTGCGTT 59.415 50.000 0.00 0.00 0.00 4.84
5741 6605 1.129809 CGGCGAGTTGTTTAGTGCG 59.870 57.895 0.00 0.00 0.00 5.34
5776 6640 1.386533 CTTCTTCATCATGGCGCCTT 58.613 50.000 29.70 19.97 0.00 4.35
5818 6682 1.969923 CATGGGCCTTTTCTTTCACCA 59.030 47.619 4.53 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.