Multiple sequence alignment - TraesCS1A01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G281000 chr1A 100.000 3058 0 0 1 3058 478629837 478626780 0.000000e+00 5648.0
1 TraesCS1A01G281000 chr1D 93.101 1609 76 16 735 2324 378106741 378105149 0.000000e+00 2324.0
2 TraesCS1A01G281000 chr1D 95.290 637 24 4 2426 3058 378105137 378104503 0.000000e+00 1005.0
3 TraesCS1A01G281000 chr1D 91.283 413 27 6 1 407 378107682 378107273 3.440000e-154 555.0
4 TraesCS1A01G281000 chr1D 94.444 72 4 0 2323 2394 28960925 28960996 8.960000e-21 111.0
5 TraesCS1A01G281000 chr1B 90.405 1803 93 30 537 2324 505657332 505655595 0.000000e+00 2298.0
6 TraesCS1A01G281000 chr1B 94.721 663 26 6 2398 3058 505655594 505654939 0.000000e+00 1022.0
7 TraesCS1A01G281000 chr1B 90.196 408 32 3 5 407 505657822 505657418 2.700000e-145 525.0
8 TraesCS1A01G281000 chr3B 93.333 75 5 0 2322 2396 23785832 23785906 8.960000e-21 111.0
9 TraesCS1A01G281000 chr6B 91.250 80 7 0 2317 2396 210282612 210282533 3.220000e-20 110.0
10 TraesCS1A01G281000 chr6B 96.875 32 1 0 509 540 535545615 535545584 2.000000e-03 54.7
11 TraesCS1A01G281000 chr5B 92.208 77 6 0 2320 2396 437570677 437570753 3.220000e-20 110.0
12 TraesCS1A01G281000 chr5B 87.755 49 6 0 492 540 263218521 263218473 1.180000e-04 58.4
13 TraesCS1A01G281000 chr2D 93.243 74 5 0 2323 2396 451974329 451974402 3.220000e-20 110.0
14 TraesCS1A01G281000 chr7A 92.105 76 5 1 2321 2396 350571868 350571794 4.170000e-19 106.0
15 TraesCS1A01G281000 chr7A 91.111 45 4 0 496 540 657150862 657150818 9.160000e-06 62.1
16 TraesCS1A01G281000 chr7A 86.000 50 7 0 492 541 719580740 719580789 2.000000e-03 54.7
17 TraesCS1A01G281000 chr5A 92.000 75 6 0 2322 2396 321667563 321667489 4.170000e-19 106.0
18 TraesCS1A01G281000 chr6A 92.000 75 5 1 2322 2396 168004139 168004066 1.500000e-18 104.0
19 TraesCS1A01G281000 chr6A 88.000 50 4 2 492 540 67537777 67537729 1.180000e-04 58.4
20 TraesCS1A01G281000 chr3A 90.000 80 8 0 2320 2399 290430102 290430023 1.500000e-18 104.0
21 TraesCS1A01G281000 chr6D 89.091 55 6 0 492 546 399221409 399221355 5.470000e-08 69.4
22 TraesCS1A01G281000 chr4A 92.857 42 3 0 496 537 666434800 666434841 9.160000e-06 62.1
23 TraesCS1A01G281000 chr2B 89.362 47 5 0 499 545 469188443 469188489 3.290000e-05 60.2
24 TraesCS1A01G281000 chr3D 90.476 42 1 2 507 545 582371972 582372013 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G281000 chr1A 478626780 478629837 3057 True 5648.000000 5648 100.000000 1 3058 1 chr1A.!!$R1 3057
1 TraesCS1A01G281000 chr1D 378104503 378107682 3179 True 1294.666667 2324 93.224667 1 3058 3 chr1D.!!$R1 3057
2 TraesCS1A01G281000 chr1B 505654939 505657822 2883 True 1281.666667 2298 91.774000 5 3058 3 chr1B.!!$R1 3053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.034767 ATGGTAGACGTCCCGAGTCA 60.035 55.0 13.01 3.13 40.84 3.41 F
1080 1399 0.736325 CCAACGGGTACTTCAGCTCG 60.736 60.0 0.00 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1627 0.457851 AGCAGCGTCATCAGAGGTAC 59.542 55.0 0.0 0.0 32.37 3.34 R
2381 2716 0.041238 CACCCACTCCCTCTGTCCTA 59.959 60.0 0.0 0.0 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.034767 ATGGTAGACGTCCCGAGTCA 60.035 55.000 13.01 3.13 40.84 3.41
44 45 1.506718 GAGTCATGTGGAGTCGCGA 59.493 57.895 3.71 3.71 36.30 5.87
158 159 8.451748 CCGAAGAAATAGTTTTCCCTTAGAAAG 58.548 37.037 0.00 0.00 45.11 2.62
174 179 7.398024 CCTTAGAAAGCTATGGTAATAGGCAT 58.602 38.462 0.00 0.00 37.23 4.40
176 181 5.006386 AGAAAGCTATGGTAATAGGCATGC 58.994 41.667 9.90 9.90 36.95 4.06
480 517 9.952188 TTGATTATGTAATACTCTCTCAGTTCG 57.048 33.333 0.00 0.00 36.43 3.95
481 518 9.338622 TGATTATGTAATACTCTCTCAGTTCGA 57.661 33.333 0.00 0.00 36.43 3.71
512 549 8.958119 AGTGACTCAAGTTTGTACTAATTTGA 57.042 30.769 20.58 20.58 34.11 2.69
518 555 8.958119 TCAAGTTTGTACTAATTTGAGTCACT 57.042 30.769 18.89 0.00 31.41 3.41
519 556 9.391006 TCAAGTTTGTACTAATTTGAGTCACTT 57.609 29.630 18.89 2.71 31.41 3.16
532 569 8.908786 ATTTGAGTCACTTATTTTGAGACAGA 57.091 30.769 0.00 0.00 0.00 3.41
533 570 7.953158 TTGAGTCACTTATTTTGAGACAGAG 57.047 36.000 0.00 0.00 0.00 3.35
534 571 6.459066 TGAGTCACTTATTTTGAGACAGAGG 58.541 40.000 0.00 0.00 0.00 3.69
535 572 5.799213 AGTCACTTATTTTGAGACAGAGGG 58.201 41.667 0.00 0.00 0.00 4.30
585 622 7.255730 CCACTCCTCAAATTCTCTTTGTCAAAT 60.256 37.037 0.00 0.00 0.00 2.32
685 722 3.254960 AGTATCTCCCAATGCTGCCTAT 58.745 45.455 0.00 0.00 0.00 2.57
871 1184 4.427661 GAGCAGAGCGCCACGAGT 62.428 66.667 2.29 0.00 44.04 4.18
900 1213 3.071206 GTGCGAGCTCCTCCCTCA 61.071 66.667 8.47 0.00 0.00 3.86
983 1302 1.610886 CCCCCTTTTGTTCGTCTCCTC 60.611 57.143 0.00 0.00 0.00 3.71
984 1303 1.610886 CCCCTTTTGTTCGTCTCCTCC 60.611 57.143 0.00 0.00 0.00 4.30
985 1304 1.348036 CCCTTTTGTTCGTCTCCTCCT 59.652 52.381 0.00 0.00 0.00 3.69
1080 1399 0.736325 CCAACGGGTACTTCAGCTCG 60.736 60.000 0.00 0.00 0.00 5.03
1121 1440 1.017701 CCTGCGGTACCGTTTCTTCC 61.018 60.000 33.34 16.51 42.09 3.46
1163 1483 3.404899 TGTTAGTCGTGAATTTGGGGAC 58.595 45.455 0.00 0.00 0.00 4.46
1183 1503 2.223021 ACGTGATTCGGCGATTTTGATG 60.223 45.455 11.76 1.22 44.69 3.07
1191 1511 2.774007 GGCGATTTTGATGTCTCGTTG 58.226 47.619 0.00 0.00 33.80 4.10
1228 1548 6.839820 TCTTTTTCCTCTTGAGTTCGTTAC 57.160 37.500 0.00 0.00 0.00 2.50
1230 1550 2.342910 TCCTCTTGAGTTCGTTACGC 57.657 50.000 0.00 0.00 0.00 4.42
1243 1563 5.405269 AGTTCGTTACGCGGTTACTAATTTT 59.595 36.000 12.47 0.00 41.72 1.82
1250 1570 2.159296 GCGGTTACTAATTTTGGGGCAG 60.159 50.000 0.00 0.00 0.00 4.85
1262 1582 2.106683 GGGGCAGGTTTCGTGATCG 61.107 63.158 0.00 0.00 38.55 3.69
1266 1586 2.125673 AGGTTTCGTGATCGGCGG 60.126 61.111 7.21 0.00 37.69 6.13
1280 1600 1.161843 CGGCGGGTTCTGTATGTTTT 58.838 50.000 0.00 0.00 0.00 2.43
1304 1627 6.573664 TTTGTTGTGATATCTGTTTGGGAG 57.426 37.500 3.98 0.00 0.00 4.30
1455 1778 5.010820 GGTAGTTGTGGGATATCCTGTCTAC 59.989 48.000 21.18 20.96 36.20 2.59
1456 1779 3.967987 AGTTGTGGGATATCCTGTCTACC 59.032 47.826 21.18 3.46 36.20 3.18
1482 1805 3.256383 TGCATTGCTGGGCATATAATGTC 59.744 43.478 10.49 0.00 38.76 3.06
1500 1823 3.763902 TGTCAAATTTGTGAACACCGTG 58.236 40.909 17.47 0.00 0.00 4.94
1504 1828 5.454232 GTCAAATTTGTGAACACCGTGTAAG 59.546 40.000 17.47 0.00 0.00 2.34
1512 1836 4.025145 GTGAACACCGTGTAAGAAAAGGAG 60.025 45.833 4.17 0.00 0.00 3.69
1513 1837 2.490991 ACACCGTGTAAGAAAAGGAGC 58.509 47.619 1.18 0.00 0.00 4.70
1530 1854 9.114952 GAAAAGGAGCTATTCTAAAGCATTAGT 57.885 33.333 8.46 0.00 42.62 2.24
1534 1858 8.705594 AGGAGCTATTCTAAAGCATTAGTTGTA 58.294 33.333 8.46 1.04 42.62 2.41
1546 1870 9.944376 AAAGCATTAGTTGTATGAGTTCTTCTA 57.056 29.630 0.00 0.00 0.00 2.10
1612 1940 7.452189 TGGGCAATTGATTGATATGTGATACAT 59.548 33.333 10.34 0.00 40.00 2.29
1676 2004 1.937924 AATCCCAAGGCAGCCCTACC 61.938 60.000 8.22 0.00 41.90 3.18
1742 2070 1.744522 GAGTCCTCGGAGTCACCTTAC 59.255 57.143 14.45 0.00 42.47 2.34
1805 2133 1.860484 GCTCTCCACACAAGCAAGCC 61.860 60.000 0.00 0.00 36.06 4.35
1811 2139 0.167470 CACACAAGCAAGCCGATGAG 59.833 55.000 0.00 0.00 0.00 2.90
1852 2180 6.366604 CACTGAAACTGCATTGCAAATAATCA 59.633 34.615 13.18 11.24 38.41 2.57
2061 2392 9.101655 TGTCAGGTTCACTTTACTACTAAAAAC 57.898 33.333 0.00 0.00 0.00 2.43
2096 2427 3.322254 ACTCTCCTACTGTGAACAAGGTG 59.678 47.826 2.00 0.52 0.00 4.00
2186 2521 5.392811 GCTATGTCTGCAGCATTTCTTTTCT 60.393 40.000 22.73 5.14 37.73 2.52
2243 2578 8.689061 TCTGAAAGTGTAGTTACTTAGTTGTCA 58.311 33.333 0.00 0.00 39.86 3.58
2244 2579 8.867112 TGAAAGTGTAGTTACTTAGTTGTCAG 57.133 34.615 0.00 0.00 39.86 3.51
2303 2638 2.289945 GGAGAACAGCTCACAAGGATGT 60.290 50.000 0.00 0.00 45.81 3.06
2315 2650 2.290641 ACAAGGATGTTCTGCGTTTGTC 59.709 45.455 0.00 0.00 35.91 3.18
2324 2659 5.031578 TGTTCTGCGTTTGTCACAAAATAC 58.968 37.500 4.02 0.00 0.00 1.89
2325 2660 5.163703 TGTTCTGCGTTTGTCACAAAATACT 60.164 36.000 4.02 0.00 0.00 2.12
2326 2661 5.090652 TCTGCGTTTGTCACAAAATACTC 57.909 39.130 4.02 0.00 0.00 2.59
2327 2662 4.024387 TCTGCGTTTGTCACAAAATACTCC 60.024 41.667 4.02 0.00 0.00 3.85
2328 2663 3.628032 TGCGTTTGTCACAAAATACTCCA 59.372 39.130 4.02 0.00 0.00 3.86
2329 2664 4.277174 TGCGTTTGTCACAAAATACTCCAT 59.723 37.500 4.02 0.00 0.00 3.41
2330 2665 4.851558 GCGTTTGTCACAAAATACTCCATC 59.148 41.667 4.02 0.00 0.00 3.51
2331 2666 5.390613 CGTTTGTCACAAAATACTCCATCC 58.609 41.667 4.02 0.00 0.00 3.51
2332 2667 5.390613 GTTTGTCACAAAATACTCCATCCG 58.609 41.667 4.02 0.00 0.00 4.18
2333 2668 4.280436 TGTCACAAAATACTCCATCCGT 57.720 40.909 0.00 0.00 0.00 4.69
2334 2669 4.250464 TGTCACAAAATACTCCATCCGTC 58.750 43.478 0.00 0.00 0.00 4.79
2335 2670 3.621715 GTCACAAAATACTCCATCCGTCC 59.378 47.826 0.00 0.00 0.00 4.79
2336 2671 2.943033 CACAAAATACTCCATCCGTCCC 59.057 50.000 0.00 0.00 0.00 4.46
2337 2672 2.574369 ACAAAATACTCCATCCGTCCCA 59.426 45.455 0.00 0.00 0.00 4.37
2338 2673 3.009695 ACAAAATACTCCATCCGTCCCAA 59.990 43.478 0.00 0.00 0.00 4.12
2339 2674 4.013728 CAAAATACTCCATCCGTCCCAAA 58.986 43.478 0.00 0.00 0.00 3.28
2340 2675 4.310022 AAATACTCCATCCGTCCCAAAA 57.690 40.909 0.00 0.00 0.00 2.44
2341 2676 4.519906 AATACTCCATCCGTCCCAAAAT 57.480 40.909 0.00 0.00 0.00 1.82
2342 2677 5.640158 AATACTCCATCCGTCCCAAAATA 57.360 39.130 0.00 0.00 0.00 1.40
2343 2678 5.640158 ATACTCCATCCGTCCCAAAATAA 57.360 39.130 0.00 0.00 0.00 1.40
2344 2679 3.886123 ACTCCATCCGTCCCAAAATAAG 58.114 45.455 0.00 0.00 0.00 1.73
2345 2680 3.265995 ACTCCATCCGTCCCAAAATAAGT 59.734 43.478 0.00 0.00 0.00 2.24
2346 2681 3.616219 TCCATCCGTCCCAAAATAAGTG 58.384 45.455 0.00 0.00 0.00 3.16
2347 2682 3.009695 TCCATCCGTCCCAAAATAAGTGT 59.990 43.478 0.00 0.00 0.00 3.55
2348 2683 3.377172 CCATCCGTCCCAAAATAAGTGTC 59.623 47.826 0.00 0.00 0.00 3.67
2349 2684 4.261801 CATCCGTCCCAAAATAAGTGTCT 58.738 43.478 0.00 0.00 0.00 3.41
2350 2685 3.934068 TCCGTCCCAAAATAAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
2351 2686 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2352 2687 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2353 2688 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2354 2689 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2355 2690 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2356 2691 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2357 2692 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2358 2693 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2359 2694 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2360 2695 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2361 2696 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2365 2700 6.846325 AAGTGTCTCAACTTTGTACTAAGC 57.154 37.500 15.69 1.05 37.05 3.09
2366 2701 6.163135 AGTGTCTCAACTTTGTACTAAGCT 57.837 37.500 15.69 2.23 0.00 3.74
2367 2702 6.583562 AGTGTCTCAACTTTGTACTAAGCTT 58.416 36.000 15.69 3.48 0.00 3.74
2368 2703 6.480320 AGTGTCTCAACTTTGTACTAAGCTTG 59.520 38.462 15.69 16.79 0.00 4.01
2369 2704 6.479001 GTGTCTCAACTTTGTACTAAGCTTGA 59.521 38.462 21.21 21.21 0.00 3.02
2370 2705 6.701841 TGTCTCAACTTTGTACTAAGCTTGAG 59.298 38.462 29.48 29.48 40.22 3.02
2371 2706 6.924060 GTCTCAACTTTGTACTAAGCTTGAGA 59.076 38.462 31.28 31.28 42.20 3.27
2372 2707 6.924060 TCTCAACTTTGTACTAAGCTTGAGAC 59.076 38.462 31.28 4.39 41.20 3.36
2373 2708 6.578944 TCAACTTTGTACTAAGCTTGAGACA 58.421 36.000 19.95 7.12 0.00 3.41
2374 2709 6.479001 TCAACTTTGTACTAAGCTTGAGACAC 59.521 38.462 19.95 7.18 0.00 3.67
2375 2710 6.163135 ACTTTGTACTAAGCTTGAGACACT 57.837 37.500 15.69 0.00 0.00 3.55
2376 2711 6.583562 ACTTTGTACTAAGCTTGAGACACTT 58.416 36.000 15.69 0.00 0.00 3.16
2377 2712 6.480320 ACTTTGTACTAAGCTTGAGACACTTG 59.520 38.462 15.69 5.42 0.00 3.16
2378 2713 5.531122 TGTACTAAGCTTGAGACACTTGT 57.469 39.130 9.86 0.00 0.00 3.16
2379 2714 5.914033 TGTACTAAGCTTGAGACACTTGTT 58.086 37.500 9.86 0.00 0.00 2.83
2380 2715 6.346096 TGTACTAAGCTTGAGACACTTGTTT 58.654 36.000 9.86 0.00 0.00 2.83
2381 2716 6.821665 TGTACTAAGCTTGAGACACTTGTTTT 59.178 34.615 9.86 0.00 0.00 2.43
2382 2717 7.982919 TGTACTAAGCTTGAGACACTTGTTTTA 59.017 33.333 9.86 0.00 0.00 1.52
2383 2718 7.484035 ACTAAGCTTGAGACACTTGTTTTAG 57.516 36.000 9.86 0.00 0.00 1.85
2384 2719 5.757850 AAGCTTGAGACACTTGTTTTAGG 57.242 39.130 0.00 0.00 0.00 2.69
2385 2720 5.036117 AGCTTGAGACACTTGTTTTAGGA 57.964 39.130 0.00 0.00 0.00 2.94
2386 2721 4.816925 AGCTTGAGACACTTGTTTTAGGAC 59.183 41.667 0.00 0.00 0.00 3.85
2387 2722 4.574828 GCTTGAGACACTTGTTTTAGGACA 59.425 41.667 0.00 0.00 0.00 4.02
2388 2723 5.277538 GCTTGAGACACTTGTTTTAGGACAG 60.278 44.000 0.00 0.00 0.00 3.51
2389 2724 5.607939 TGAGACACTTGTTTTAGGACAGA 57.392 39.130 0.00 0.00 0.00 3.41
2390 2725 5.601662 TGAGACACTTGTTTTAGGACAGAG 58.398 41.667 0.00 0.00 0.00 3.35
2391 2726 4.962155 AGACACTTGTTTTAGGACAGAGG 58.038 43.478 0.00 0.00 0.00 3.69
2392 2727 4.065789 GACACTTGTTTTAGGACAGAGGG 58.934 47.826 0.00 0.00 0.00 4.30
2393 2728 3.714798 ACACTTGTTTTAGGACAGAGGGA 59.285 43.478 0.00 0.00 0.00 4.20
2394 2729 4.202367 ACACTTGTTTTAGGACAGAGGGAG 60.202 45.833 0.00 0.00 0.00 4.30
2395 2730 3.974642 ACTTGTTTTAGGACAGAGGGAGT 59.025 43.478 0.00 0.00 0.00 3.85
2396 2731 4.202367 ACTTGTTTTAGGACAGAGGGAGTG 60.202 45.833 0.00 0.00 0.00 3.51
2418 2753 3.307059 GGGTGTAACAGAGAGCTGATTGT 60.307 47.826 0.00 0.00 45.17 2.71
2419 2754 4.319177 GGTGTAACAGAGAGCTGATTGTT 58.681 43.478 0.00 0.79 45.17 2.83
2420 2755 4.757149 GGTGTAACAGAGAGCTGATTGTTT 59.243 41.667 10.47 0.00 45.17 2.83
2421 2756 5.932303 GGTGTAACAGAGAGCTGATTGTTTA 59.068 40.000 10.47 1.14 45.17 2.01
2422 2757 6.091441 GGTGTAACAGAGAGCTGATTGTTTAG 59.909 42.308 10.47 0.00 45.17 1.85
2423 2758 6.647067 GTGTAACAGAGAGCTGATTGTTTAGT 59.353 38.462 10.47 0.00 45.17 2.24
2530 2867 0.550147 ATGGGTGGACTGCCCTTAGT 60.550 55.000 1.85 0.00 46.22 2.24
2771 3110 6.205464 TGATTGACTGTCCTGAATTGAAAGTC 59.795 38.462 5.17 7.38 44.16 3.01
2809 3148 3.036075 ACCTAACAGCCTTGTAACGAC 57.964 47.619 0.00 0.00 36.23 4.34
2812 3151 1.878953 AACAGCCTTGTAACGACTGG 58.121 50.000 0.00 0.00 36.23 4.00
2831 3170 4.397103 ACTGGCATCAACATCATTGTAGTG 59.603 41.667 0.00 0.00 34.06 2.74
2939 3278 1.904287 ATTGCTCCTACGTTTTGGCA 58.096 45.000 0.00 0.00 0.00 4.92
3005 3344 2.025037 AGCTGGCAATGGTTAATCCTCA 60.025 45.455 0.00 0.00 37.07 3.86
3022 3361 5.227569 TCCTCAGTGCATTTCTAAGTTCA 57.772 39.130 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.945354 ATTCCGTCGCGACTCCACAT 61.945 55.000 33.94 16.91 0.00 3.21
41 42 3.807622 TGGATATTTCTGAATTCCGTCGC 59.192 43.478 2.27 0.00 31.03 5.19
44 45 5.989477 TGTCTGGATATTTCTGAATTCCGT 58.011 37.500 2.27 0.00 31.03 4.69
158 159 2.972625 TCGCATGCCTATTACCATAGC 58.027 47.619 13.15 0.00 32.17 2.97
161 162 3.084039 CCATTCGCATGCCTATTACCAT 58.916 45.455 13.15 0.00 0.00 3.55
174 179 3.567585 TCAACAACAAAGATCCATTCGCA 59.432 39.130 0.00 0.00 0.00 5.10
176 181 4.083110 AGCTCAACAACAAAGATCCATTCG 60.083 41.667 0.00 0.00 0.00 3.34
486 523 9.391006 TCAAATTAGTACAAACTTGAGTCACTT 57.609 29.630 0.00 0.00 37.15 3.16
487 524 8.958119 TCAAATTAGTACAAACTTGAGTCACT 57.042 30.769 0.00 0.00 37.15 3.41
488 525 8.827677 ACTCAAATTAGTACAAACTTGAGTCAC 58.172 33.333 19.47 0.00 42.44 3.67
489 526 8.958119 ACTCAAATTAGTACAAACTTGAGTCA 57.042 30.769 19.47 0.00 42.44 3.41
491 528 8.827677 GTGACTCAAATTAGTACAAACTTGAGT 58.172 33.333 22.72 22.72 45.92 3.41
492 529 9.046296 AGTGACTCAAATTAGTACAAACTTGAG 57.954 33.333 18.57 18.57 40.44 3.02
493 530 8.958119 AGTGACTCAAATTAGTACAAACTTGA 57.042 30.769 0.00 0.00 37.15 3.02
506 543 9.342308 TCTGTCTCAAAATAAGTGACTCAAATT 57.658 29.630 0.00 0.00 32.38 1.82
507 544 8.908786 TCTGTCTCAAAATAAGTGACTCAAAT 57.091 30.769 0.00 0.00 32.38 2.32
508 545 7.442364 CCTCTGTCTCAAAATAAGTGACTCAAA 59.558 37.037 0.00 0.00 32.38 2.69
509 546 6.931281 CCTCTGTCTCAAAATAAGTGACTCAA 59.069 38.462 0.00 0.00 32.38 3.02
510 547 6.459066 CCTCTGTCTCAAAATAAGTGACTCA 58.541 40.000 0.00 0.00 32.38 3.41
511 548 5.872070 CCCTCTGTCTCAAAATAAGTGACTC 59.128 44.000 0.00 0.00 32.38 3.36
512 549 5.544176 TCCCTCTGTCTCAAAATAAGTGACT 59.456 40.000 0.00 0.00 32.38 3.41
513 550 5.794894 TCCCTCTGTCTCAAAATAAGTGAC 58.205 41.667 0.00 0.00 0.00 3.67
514 551 6.433847 TTCCCTCTGTCTCAAAATAAGTGA 57.566 37.500 0.00 0.00 0.00 3.41
515 552 7.824289 TGTATTCCCTCTGTCTCAAAATAAGTG 59.176 37.037 0.00 0.00 0.00 3.16
516 553 7.918076 TGTATTCCCTCTGTCTCAAAATAAGT 58.082 34.615 0.00 0.00 0.00 2.24
517 554 8.792830 TTGTATTCCCTCTGTCTCAAAATAAG 57.207 34.615 0.00 0.00 0.00 1.73
518 555 9.581289 TTTTGTATTCCCTCTGTCTCAAAATAA 57.419 29.630 0.00 0.00 31.65 1.40
519 556 9.753674 ATTTTGTATTCCCTCTGTCTCAAAATA 57.246 29.630 0.00 0.00 40.20 1.40
520 557 8.655935 ATTTTGTATTCCCTCTGTCTCAAAAT 57.344 30.769 0.00 0.00 38.51 1.82
521 558 8.359642 CAATTTTGTATTCCCTCTGTCTCAAAA 58.640 33.333 0.00 0.00 37.72 2.44
522 559 7.505585 ACAATTTTGTATTCCCTCTGTCTCAAA 59.494 33.333 0.00 0.00 40.16 2.69
523 560 7.004086 ACAATTTTGTATTCCCTCTGTCTCAA 58.996 34.615 0.00 0.00 40.16 3.02
524 561 6.430925 CACAATTTTGTATTCCCTCTGTCTCA 59.569 38.462 0.00 0.00 39.91 3.27
525 562 6.127897 CCACAATTTTGTATTCCCTCTGTCTC 60.128 42.308 0.00 0.00 39.91 3.36
526 563 5.711976 CCACAATTTTGTATTCCCTCTGTCT 59.288 40.000 0.00 0.00 39.91 3.41
527 564 5.105756 CCCACAATTTTGTATTCCCTCTGTC 60.106 44.000 0.00 0.00 39.91 3.51
528 565 4.772100 CCCACAATTTTGTATTCCCTCTGT 59.228 41.667 0.00 0.00 39.91 3.41
529 566 4.772100 ACCCACAATTTTGTATTCCCTCTG 59.228 41.667 0.00 0.00 39.91 3.35
530 567 5.010708 ACCCACAATTTTGTATTCCCTCT 57.989 39.130 0.00 0.00 39.91 3.69
531 568 5.738619 AACCCACAATTTTGTATTCCCTC 57.261 39.130 0.00 0.00 39.91 4.30
532 569 5.368230 ACAAACCCACAATTTTGTATTCCCT 59.632 36.000 0.00 0.00 42.72 4.20
533 570 5.616270 ACAAACCCACAATTTTGTATTCCC 58.384 37.500 0.00 0.00 42.72 3.97
534 571 7.171848 GGTTACAAACCCACAATTTTGTATTCC 59.828 37.037 7.53 9.20 43.97 3.01
535 572 8.078959 GGTTACAAACCCACAATTTTGTATTC 57.921 34.615 7.53 5.20 43.97 1.75
585 622 4.245660 TGTTTTTCGCAACAACCATTTGA 58.754 34.783 0.00 0.00 33.60 2.69
641 678 7.643123 ACTATTGGTAATCTCAATTCCACCTT 58.357 34.615 0.00 0.00 36.40 3.50
685 722 6.653526 TCCTTTTGATTTTGAAGATGCTCA 57.346 33.333 0.00 0.00 0.00 4.26
724 761 1.608055 GGCAGCATTTTTGGCCTTTT 58.392 45.000 3.32 0.00 43.09 2.27
728 765 0.176449 CCTAGGCAGCATTTTTGGCC 59.824 55.000 0.00 0.00 46.77 5.36
729 766 1.185315 TCCTAGGCAGCATTTTTGGC 58.815 50.000 2.96 0.00 41.05 4.52
730 767 3.853475 CTTTCCTAGGCAGCATTTTTGG 58.147 45.455 2.96 0.00 0.00 3.28
731 768 3.256558 GCTTTCCTAGGCAGCATTTTTG 58.743 45.455 21.94 0.00 33.45 2.44
732 769 2.899256 TGCTTTCCTAGGCAGCATTTTT 59.101 40.909 24.44 0.00 38.65 1.94
733 770 2.528564 TGCTTTCCTAGGCAGCATTTT 58.471 42.857 24.44 0.00 38.65 1.82
836 1149 3.801997 CGGCCTCCATCTGCCCTT 61.802 66.667 0.00 0.00 45.07 3.95
871 1184 0.668706 GCTCGCACTTCTCTGCTTGA 60.669 55.000 0.00 0.00 34.77 3.02
984 1303 2.824041 ATGCTGGCGGCGGTTTAG 60.824 61.111 20.06 4.13 45.43 1.85
985 1304 3.130819 CATGCTGGCGGCGGTTTA 61.131 61.111 20.06 6.83 45.43 2.01
1068 1387 2.159352 GGAGAAGACCGAGCTGAAGTAC 60.159 54.545 0.00 0.00 0.00 2.73
1155 1475 1.673009 GCCGAATCACGTCCCCAAA 60.673 57.895 0.00 0.00 40.78 3.28
1163 1483 2.223021 ACATCAAAATCGCCGAATCACG 60.223 45.455 0.00 0.00 42.18 4.35
1183 1503 1.079750 GGGCAGGAGACAACGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
1191 1511 2.115343 AAAAGAATCGGGCAGGAGAC 57.885 50.000 0.00 0.00 0.00 3.36
1228 1548 1.202211 GCCCCAAAATTAGTAACCGCG 60.202 52.381 0.00 0.00 0.00 6.46
1230 1550 2.425668 CCTGCCCCAAAATTAGTAACCG 59.574 50.000 0.00 0.00 0.00 4.44
1243 1563 1.002624 GATCACGAAACCTGCCCCA 60.003 57.895 0.00 0.00 0.00 4.96
1250 1570 3.192922 CCCGCCGATCACGAAACC 61.193 66.667 6.70 0.00 42.66 3.27
1280 1600 6.549364 ACTCCCAAACAGATATCACAACAAAA 59.451 34.615 5.32 0.00 0.00 2.44
1283 1603 5.241403 ACTCCCAAACAGATATCACAACA 57.759 39.130 5.32 0.00 0.00 3.33
1284 1604 5.585047 GGTACTCCCAAACAGATATCACAAC 59.415 44.000 5.32 0.00 0.00 3.32
1286 1606 5.030147 AGGTACTCCCAAACAGATATCACA 58.970 41.667 5.32 0.00 34.66 3.58
1287 1607 5.615925 AGGTACTCCCAAACAGATATCAC 57.384 43.478 5.32 0.00 34.66 3.06
1304 1627 0.457851 AGCAGCGTCATCAGAGGTAC 59.542 55.000 0.00 0.00 32.37 3.34
1482 1805 5.574082 TCTTACACGGTGTTCACAAATTTG 58.426 37.500 20.15 16.67 0.00 2.32
1500 1823 8.494016 TGCTTTAGAATAGCTCCTTTTCTTAC 57.506 34.615 0.00 0.00 39.38 2.34
1504 1828 9.114952 ACTAATGCTTTAGAATAGCTCCTTTTC 57.885 33.333 22.34 0.00 38.56 2.29
1530 1854 9.244292 ACATCAGTAGTAGAAGAACTCATACAA 57.756 33.333 0.00 0.00 0.00 2.41
1534 1858 8.354711 TCAACATCAGTAGTAGAAGAACTCAT 57.645 34.615 0.00 0.00 0.00 2.90
1539 1863 9.462606 TGACTATCAACATCAGTAGTAGAAGAA 57.537 33.333 0.00 0.00 0.00 2.52
1540 1864 9.634021 ATGACTATCAACATCAGTAGTAGAAGA 57.366 33.333 0.00 0.00 0.00 2.87
1541 1865 9.891828 GATGACTATCAACATCAGTAGTAGAAG 57.108 37.037 0.00 0.00 41.44 2.85
1546 1870 8.356657 GCTAAGATGACTATCAACATCAGTAGT 58.643 37.037 0.00 0.00 43.40 2.73
1612 1940 8.725405 TGAAAATTACACAGTTAGTTCACTGA 57.275 30.769 7.82 0.00 46.29 3.41
1676 2004 4.688879 TCTTTGTAAGCAACACGACCTATG 59.311 41.667 0.00 0.00 38.00 2.23
1730 2058 2.701107 GAGCCAAAGTAAGGTGACTCC 58.299 52.381 0.00 0.00 42.68 3.85
1742 2070 0.877071 AATGCACAGACGAGCCAAAG 59.123 50.000 0.00 0.00 0.00 2.77
1805 2133 5.233050 GTGTACATTTCTGGATGACTCATCG 59.767 44.000 12.06 1.14 41.35 3.84
1811 2139 6.428159 AGTTTCAGTGTACATTTCTGGATGAC 59.572 38.462 10.97 1.08 0.00 3.06
1893 2224 7.739444 TCCTCCTTATACTGGATTGGACATATT 59.261 37.037 0.00 0.00 32.56 1.28
2011 2342 9.245962 ACAGAAAATTATAGTCAGTACGTATGC 57.754 33.333 0.00 0.00 0.00 3.14
2061 2392 2.787994 AGGAGAGTCCATTGCAAAGTG 58.212 47.619 1.71 0.00 39.61 3.16
2186 2521 6.887013 TGTTAACCTACCACTGTTCAAACTA 58.113 36.000 2.48 0.00 0.00 2.24
2243 2578 9.836076 GTTTTAACTTAACTCTGTCAAAACACT 57.164 29.630 0.00 0.00 35.66 3.55
2244 2579 9.836076 AGTTTTAACTTAACTCTGTCAAAACAC 57.164 29.630 0.00 0.00 37.19 3.32
2303 2638 5.493133 AGTATTTTGTGACAAACGCAGAA 57.507 34.783 10.72 0.00 40.21 3.02
2315 2650 2.943033 GGGACGGATGGAGTATTTTGTG 59.057 50.000 0.00 0.00 0.00 3.33
2324 2659 3.627577 CACTTATTTTGGGACGGATGGAG 59.372 47.826 0.00 0.00 0.00 3.86
2325 2660 3.009695 ACACTTATTTTGGGACGGATGGA 59.990 43.478 0.00 0.00 0.00 3.41
2326 2661 3.352648 ACACTTATTTTGGGACGGATGG 58.647 45.455 0.00 0.00 0.00 3.51
2327 2662 4.261801 AGACACTTATTTTGGGACGGATG 58.738 43.478 0.00 0.00 0.00 3.51
2328 2663 4.019681 TGAGACACTTATTTTGGGACGGAT 60.020 41.667 0.00 0.00 0.00 4.18
2329 2664 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2330 2665 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2331 2666 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2332 2667 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2333 2668 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2334 2669 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2335 2670 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2339 2674 8.989980 GCTTAGTACAAAGTTGAGACACTTATT 58.010 33.333 0.00 0.00 35.87 1.40
2340 2675 8.368668 AGCTTAGTACAAAGTTGAGACACTTAT 58.631 33.333 0.00 0.00 35.87 1.73
2341 2676 7.723324 AGCTTAGTACAAAGTTGAGACACTTA 58.277 34.615 0.00 0.00 35.87 2.24
2342 2677 6.583562 AGCTTAGTACAAAGTTGAGACACTT 58.416 36.000 0.00 0.00 38.74 3.16
2343 2678 6.163135 AGCTTAGTACAAAGTTGAGACACT 57.837 37.500 0.00 0.00 0.00 3.55
2344 2679 6.479001 TCAAGCTTAGTACAAAGTTGAGACAC 59.521 38.462 0.00 0.00 30.32 3.67
2345 2680 6.578944 TCAAGCTTAGTACAAAGTTGAGACA 58.421 36.000 0.00 0.00 30.32 3.41
2346 2681 6.924060 TCTCAAGCTTAGTACAAAGTTGAGAC 59.076 38.462 17.06 0.00 41.76 3.36
2347 2682 6.924060 GTCTCAAGCTTAGTACAAAGTTGAGA 59.076 38.462 17.06 17.06 42.78 3.27
2348 2683 6.701841 TGTCTCAAGCTTAGTACAAAGTTGAG 59.298 38.462 0.00 14.22 40.79 3.02
2349 2684 6.479001 GTGTCTCAAGCTTAGTACAAAGTTGA 59.521 38.462 0.00 0.00 31.66 3.18
2350 2685 6.480320 AGTGTCTCAAGCTTAGTACAAAGTTG 59.520 38.462 0.00 0.00 0.00 3.16
2351 2686 6.583562 AGTGTCTCAAGCTTAGTACAAAGTT 58.416 36.000 0.00 0.00 0.00 2.66
2352 2687 6.163135 AGTGTCTCAAGCTTAGTACAAAGT 57.837 37.500 0.00 0.00 0.00 2.66
2353 2688 6.480320 ACAAGTGTCTCAAGCTTAGTACAAAG 59.520 38.462 0.00 0.48 0.00 2.77
2354 2689 6.346096 ACAAGTGTCTCAAGCTTAGTACAAA 58.654 36.000 0.00 0.00 0.00 2.83
2355 2690 5.914033 ACAAGTGTCTCAAGCTTAGTACAA 58.086 37.500 0.00 0.00 0.00 2.41
2356 2691 5.531122 ACAAGTGTCTCAAGCTTAGTACA 57.469 39.130 0.00 0.36 0.00 2.90
2357 2692 6.846325 AAACAAGTGTCTCAAGCTTAGTAC 57.154 37.500 0.00 0.00 0.00 2.73
2358 2693 7.656137 CCTAAAACAAGTGTCTCAAGCTTAGTA 59.344 37.037 0.00 0.00 0.00 1.82
2359 2694 6.483640 CCTAAAACAAGTGTCTCAAGCTTAGT 59.516 38.462 0.00 0.00 0.00 2.24
2360 2695 6.706270 TCCTAAAACAAGTGTCTCAAGCTTAG 59.294 38.462 0.00 0.00 0.00 2.18
2361 2696 6.482308 GTCCTAAAACAAGTGTCTCAAGCTTA 59.518 38.462 0.00 0.00 0.00 3.09
2362 2697 5.297029 GTCCTAAAACAAGTGTCTCAAGCTT 59.703 40.000 0.00 0.00 0.00 3.74
2363 2698 4.816925 GTCCTAAAACAAGTGTCTCAAGCT 59.183 41.667 0.00 0.00 0.00 3.74
2364 2699 4.574828 TGTCCTAAAACAAGTGTCTCAAGC 59.425 41.667 0.00 0.00 0.00 4.01
2365 2700 6.049149 TCTGTCCTAAAACAAGTGTCTCAAG 58.951 40.000 0.00 0.00 0.00 3.02
2366 2701 5.984725 TCTGTCCTAAAACAAGTGTCTCAA 58.015 37.500 0.00 0.00 0.00 3.02
2367 2702 5.453339 CCTCTGTCCTAAAACAAGTGTCTCA 60.453 44.000 0.00 0.00 0.00 3.27
2368 2703 4.991687 CCTCTGTCCTAAAACAAGTGTCTC 59.008 45.833 0.00 0.00 0.00 3.36
2369 2704 4.202367 CCCTCTGTCCTAAAACAAGTGTCT 60.202 45.833 0.00 0.00 0.00 3.41
2370 2705 4.065789 CCCTCTGTCCTAAAACAAGTGTC 58.934 47.826 0.00 0.00 0.00 3.67
2371 2706 3.714798 TCCCTCTGTCCTAAAACAAGTGT 59.285 43.478 0.00 0.00 0.00 3.55
2372 2707 4.202367 ACTCCCTCTGTCCTAAAACAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
2373 2708 3.974642 ACTCCCTCTGTCCTAAAACAAGT 59.025 43.478 0.00 0.00 0.00 3.16
2374 2709 4.319177 CACTCCCTCTGTCCTAAAACAAG 58.681 47.826 0.00 0.00 0.00 3.16
2375 2710 3.072476 CCACTCCCTCTGTCCTAAAACAA 59.928 47.826 0.00 0.00 0.00 2.83
2376 2711 2.637872 CCACTCCCTCTGTCCTAAAACA 59.362 50.000 0.00 0.00 0.00 2.83
2377 2712 2.027100 CCCACTCCCTCTGTCCTAAAAC 60.027 54.545 0.00 0.00 0.00 2.43
2378 2713 2.266279 CCCACTCCCTCTGTCCTAAAA 58.734 52.381 0.00 0.00 0.00 1.52
2379 2714 1.151413 ACCCACTCCCTCTGTCCTAAA 59.849 52.381 0.00 0.00 0.00 1.85
2380 2715 0.790993 ACCCACTCCCTCTGTCCTAA 59.209 55.000 0.00 0.00 0.00 2.69
2381 2716 0.041238 CACCCACTCCCTCTGTCCTA 59.959 60.000 0.00 0.00 0.00 2.94
2382 2717 1.229336 CACCCACTCCCTCTGTCCT 60.229 63.158 0.00 0.00 0.00 3.85
2383 2718 0.252103 TACACCCACTCCCTCTGTCC 60.252 60.000 0.00 0.00 0.00 4.02
2384 2719 1.275573 GTTACACCCACTCCCTCTGTC 59.724 57.143 0.00 0.00 0.00 3.51
2385 2720 1.349067 GTTACACCCACTCCCTCTGT 58.651 55.000 0.00 0.00 0.00 3.41
2386 2721 1.276421 CTGTTACACCCACTCCCTCTG 59.724 57.143 0.00 0.00 0.00 3.35
2387 2722 1.149288 TCTGTTACACCCACTCCCTCT 59.851 52.381 0.00 0.00 0.00 3.69
2388 2723 1.550976 CTCTGTTACACCCACTCCCTC 59.449 57.143 0.00 0.00 0.00 4.30
2389 2724 1.149288 TCTCTGTTACACCCACTCCCT 59.851 52.381 0.00 0.00 0.00 4.20
2390 2725 1.550976 CTCTCTGTTACACCCACTCCC 59.449 57.143 0.00 0.00 0.00 4.30
2391 2726 1.066787 GCTCTCTGTTACACCCACTCC 60.067 57.143 0.00 0.00 0.00 3.85
2392 2727 1.896465 AGCTCTCTGTTACACCCACTC 59.104 52.381 0.00 0.00 0.00 3.51
2393 2728 1.620819 CAGCTCTCTGTTACACCCACT 59.379 52.381 0.00 0.00 35.61 4.00
2394 2729 1.618837 TCAGCTCTCTGTTACACCCAC 59.381 52.381 0.00 0.00 41.10 4.61
2395 2730 2.009681 TCAGCTCTCTGTTACACCCA 57.990 50.000 0.00 0.00 41.10 4.51
2396 2731 3.265791 CAATCAGCTCTCTGTTACACCC 58.734 50.000 0.00 0.00 41.10 4.61
2419 2754 9.971922 GTACCTTGTACAAAAGACTAAGACTAA 57.028 33.333 10.03 0.00 0.00 2.24
2420 2755 9.135189 TGTACCTTGTACAAAAGACTAAGACTA 57.865 33.333 10.03 0.00 0.00 2.59
2421 2756 7.924947 GTGTACCTTGTACAAAAGACTAAGACT 59.075 37.037 10.03 0.00 0.00 3.24
2422 2757 7.096312 CGTGTACCTTGTACAAAAGACTAAGAC 60.096 40.741 10.03 1.85 0.00 3.01
2423 2758 6.919662 CGTGTACCTTGTACAAAAGACTAAGA 59.080 38.462 10.03 0.00 0.00 2.10
2530 2867 0.971386 GAGTGGGTTGGAGGTTACGA 59.029 55.000 0.00 0.00 0.00 3.43
2623 2960 7.231467 ACCTAATTAGACACCAAAACTGTGAT 58.769 34.615 14.28 0.00 37.18 3.06
2626 2963 6.002082 GGACCTAATTAGACACCAAAACTGT 58.998 40.000 14.28 0.00 0.00 3.55
2646 2985 2.783135 TCTTGTGCAGATTTCAGGACC 58.217 47.619 0.00 0.00 0.00 4.46
2713 3052 2.105477 AGAGCTGTCAATGTCAACCACT 59.895 45.455 0.00 0.00 0.00 4.00
2714 3053 2.481952 GAGAGCTGTCAATGTCAACCAC 59.518 50.000 5.89 0.00 0.00 4.16
2809 3148 4.637091 TCACTACAATGATGTTGATGCCAG 59.363 41.667 0.00 0.00 41.05 4.85
2831 3170 4.866508 TGACGGGATAATAGGTCACATC 57.133 45.455 0.00 0.00 34.71 3.06
3005 3344 7.801716 TGTTAAGTGAACTTAGAAATGCACT 57.198 32.000 3.32 0.00 39.36 4.40
3022 3361 1.611491 CAACCGGTTGCCATGTTAAGT 59.389 47.619 32.87 0.00 33.45 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.