Multiple sequence alignment - TraesCS1A01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G280900 chr1A 100.000 4586 0 0 878 5463 478566906 478571491 0.000000e+00 8469
1 TraesCS1A01G280900 chr1A 100.000 442 0 0 1 442 478566029 478566470 0.000000e+00 817
2 TraesCS1A01G280900 chr1A 92.241 580 40 4 4886 5463 543040755 543040179 0.000000e+00 817
3 TraesCS1A01G280900 chr1B 89.671 2188 157 33 2746 4887 505627401 505629565 0.000000e+00 2724
4 TraesCS1A01G280900 chr1B 92.155 956 31 11 878 1798 505625797 505626743 0.000000e+00 1310
5 TraesCS1A01G280900 chr1B 89.310 449 15 14 4 442 505625324 505625749 2.900000e-147 532
6 TraesCS1A01G280900 chr1B 95.385 260 9 2 2492 2748 283978982 283978723 1.420000e-110 411
7 TraesCS1A01G280900 chr1B 88.433 268 21 4 2110 2372 595014736 595014998 1.140000e-81 315
8 TraesCS1A01G280900 chr1B 94.839 155 8 0 1934 2088 505626870 505627024 5.470000e-60 243
9 TraesCS1A01G280900 chr1B 95.652 138 4 1 2369 2506 505627028 505627163 2.560000e-53 220
10 TraesCS1A01G280900 chr1D 91.470 1946 116 22 2960 4887 377975093 377977006 0.000000e+00 2628
11 TraesCS1A01G280900 chr1D 91.168 985 31 18 878 1825 377973417 377974382 0.000000e+00 1286
12 TraesCS1A01G280900 chr1D 91.063 414 12 8 4 409 377972950 377973346 2.240000e-148 536
13 TraesCS1A01G280900 chr1D 90.688 247 17 2 2132 2377 312759374 312759615 1.900000e-84 324
14 TraesCS1A01G280900 chr1D 97.744 133 1 2 2369 2500 377974642 377974773 1.530000e-55 228
15 TraesCS1A01G280900 chr1D 90.385 156 6 4 1942 2088 377974483 377974638 4.320000e-46 196
16 TraesCS1A01G280900 chr3D 95.139 576 22 4 4888 5463 31715948 31715379 0.000000e+00 904
17 TraesCS1A01G280900 chr3D 83.777 376 45 14 1411 1782 470894838 470894475 5.240000e-90 342
18 TraesCS1A01G280900 chr3D 89.787 235 19 4 4888 5121 31711929 31712159 4.140000e-76 296
19 TraesCS1A01G280900 chrUn 93.934 577 31 3 4888 5463 89688400 89687827 0.000000e+00 869
20 TraesCS1A01G280900 chrUn 91.532 248 10 5 2128 2373 96661773 96661535 1.130000e-86 331
21 TraesCS1A01G280900 chr7B 93.426 578 36 2 4888 5463 23662802 23662225 0.000000e+00 856
22 TraesCS1A01G280900 chr7B 94.697 264 10 3 2489 2748 386077561 386077298 1.830000e-109 407
23 TraesCS1A01G280900 chr7B 95.000 260 10 2 2492 2748 462067534 462067793 6.590000e-109 405
24 TraesCS1A01G280900 chr7B 91.770 243 14 2 2132 2373 164593472 164593235 3.150000e-87 333
25 TraesCS1A01G280900 chr7B 86.920 237 29 2 4884 5119 23656031 23656266 1.170000e-66 265
26 TraesCS1A01G280900 chr5B 92.573 579 41 1 4885 5463 692672612 692673188 0.000000e+00 830
27 TraesCS1A01G280900 chr5B 91.019 579 47 2 4888 5463 16404849 16404273 0.000000e+00 776
28 TraesCS1A01G280900 chr5B 95.000 260 9 3 2492 2748 450862710 450862452 6.590000e-109 405
29 TraesCS1A01G280900 chr5B 91.667 240 14 2 2132 2370 609157821 609157587 1.470000e-85 327
30 TraesCS1A01G280900 chr5B 91.870 123 10 0 1412 1534 523213437 523213559 7.280000e-39 172
31 TraesCS1A01G280900 chr2A 92.083 581 39 4 4887 5461 630068699 630069278 0.000000e+00 811
32 TraesCS1A01G280900 chr3B 97.934 242 5 0 2491 2732 244234082 244233841 2.350000e-113 420
33 TraesCS1A01G280900 chr3B 82.776 389 44 16 1407 1782 625336941 625336563 5.280000e-85 326
34 TraesCS1A01G280900 chr4B 97.166 247 6 1 2489 2734 21235372 21235126 3.040000e-112 416
35 TraesCS1A01G280900 chr4B 95.000 260 10 2 2492 2748 215771170 215771429 6.590000e-109 405
36 TraesCS1A01G280900 chr4B 95.000 260 10 2 2492 2748 479138099 479138358 6.590000e-109 405
37 TraesCS1A01G280900 chr4B 79.693 261 35 11 2095 2342 210778798 210779053 7.280000e-39 172
38 TraesCS1A01G280900 chr4B 79.693 261 35 11 2095 2342 210780781 210781036 7.280000e-39 172
39 TraesCS1A01G280900 chr6B 95.000 260 10 2 2492 2748 175111538 175111797 6.590000e-109 405
40 TraesCS1A01G280900 chr6B 89.963 269 17 4 2110 2373 221668098 221667835 6.780000e-89 339
41 TraesCS1A01G280900 chr6B 90.189 265 17 3 2110 2373 9922335 9922079 2.440000e-88 337
42 TraesCS1A01G280900 chr7A 91.393 244 15 2 2132 2374 6649469 6649231 4.080000e-86 329
43 TraesCS1A01G280900 chr5A 88.806 268 20 4 2110 2372 596597231 596596969 2.460000e-83 320
44 TraesCS1A01G280900 chr5A 91.870 123 10 0 1412 1534 547332374 547332252 7.280000e-39 172
45 TraesCS1A01G280900 chr3A 82.677 381 44 20 1411 1782 613175570 613175203 8.830000e-83 318
46 TraesCS1A01G280900 chr3A 81.188 303 38 13 2082 2370 461196891 461196594 5.510000e-55 226
47 TraesCS1A01G280900 chr5D 81.481 405 54 12 4885 5283 502111996 502112385 4.110000e-81 313
48 TraesCS1A01G280900 chr5D 91.870 123 10 0 1412 1534 432514646 432514524 7.280000e-39 172
49 TraesCS1A01G280900 chr4A 81.356 295 36 13 2082 2362 103861325 103861036 7.120000e-54 222
50 TraesCS1A01G280900 chr2D 85.638 188 25 2 4638 4824 627956141 627955955 4.320000e-46 196
51 TraesCS1A01G280900 chr2D 77.616 344 50 21 1408 1734 520527018 520526685 3.360000e-42 183
52 TraesCS1A01G280900 chr4D 78.082 292 41 16 2101 2374 357910931 357910645 4.380000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G280900 chr1A 478566029 478571491 5462 False 4643.0 8469 100.0000 1 5463 2 chr1A.!!$F1 5462
1 TraesCS1A01G280900 chr1A 543040179 543040755 576 True 817.0 817 92.2410 4886 5463 1 chr1A.!!$R1 577
2 TraesCS1A01G280900 chr1B 505625324 505629565 4241 False 1005.8 2724 92.3254 4 4887 5 chr1B.!!$F2 4883
3 TraesCS1A01G280900 chr1D 377972950 377977006 4056 False 974.8 2628 92.3660 4 4887 5 chr1D.!!$F2 4883
4 TraesCS1A01G280900 chr3D 31715379 31715948 569 True 904.0 904 95.1390 4888 5463 1 chr3D.!!$R1 575
5 TraesCS1A01G280900 chrUn 89687827 89688400 573 True 869.0 869 93.9340 4888 5463 1 chrUn.!!$R1 575
6 TraesCS1A01G280900 chr7B 23662225 23662802 577 True 856.0 856 93.4260 4888 5463 1 chr7B.!!$R1 575
7 TraesCS1A01G280900 chr5B 692672612 692673188 576 False 830.0 830 92.5730 4885 5463 1 chr5B.!!$F2 578
8 TraesCS1A01G280900 chr5B 16404273 16404849 576 True 776.0 776 91.0190 4888 5463 1 chr5B.!!$R1 575
9 TraesCS1A01G280900 chr2A 630068699 630069278 579 False 811.0 811 92.0830 4887 5461 1 chr2A.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 140 0.105658 TATCCACCTTCCCTCCCTCG 60.106 60.0 0.00 0.00 0.00 4.63 F
204 223 0.177604 AAGAAGGCGATGGCAGAGAG 59.822 55.0 1.01 0.00 42.47 3.20 F
206 225 0.249405 GAAGGCGATGGCAGAGAGAG 60.249 60.0 1.01 0.00 42.47 3.20 F
1589 1630 0.601046 GCTGTGCAGTGTCACTAGCA 60.601 55.0 19.65 19.65 39.08 3.49 F
3143 3362 0.103208 CGGCACTTCGGAAGCTAGAT 59.897 55.0 17.37 0.00 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2028 1.013596 TGAACAACAACACTGGAGCG 58.986 50.000 0.00 0.0 0.00 5.03 R
2098 2181 1.831106 ACAATCAGCCATGTACTCCGA 59.169 47.619 0.00 0.0 0.00 4.55 R
2108 2191 1.922447 ACTCCCCATTACAATCAGCCA 59.078 47.619 0.00 0.0 0.00 4.75 R
3225 3444 0.032813 CCATTGCCATCAGAGGGGTT 60.033 55.000 2.61 0.0 0.00 4.11 R
4837 5086 0.174845 CCTCCCAAACGTCTATGCGA 59.825 55.000 0.00 0.0 35.59 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.023832 GCCACTAAACAACCATAGCCAT 58.976 45.455 0.00 0.00 0.00 4.40
25 26 3.312421 CACTAAACAACCATAGCCATCCG 59.688 47.826 0.00 0.00 0.00 4.18
28 29 1.496060 ACAACCATAGCCATCCGAGA 58.504 50.000 0.00 0.00 0.00 4.04
123 140 0.105658 TATCCACCTTCCCTCCCTCG 60.106 60.000 0.00 0.00 0.00 4.63
125 142 3.003173 CACCTTCCCTCCCTCGCA 61.003 66.667 0.00 0.00 0.00 5.10
199 218 1.586028 GCAAAAGAAGGCGATGGCA 59.414 52.632 1.01 0.00 42.47 4.92
200 219 0.457337 GCAAAAGAAGGCGATGGCAG 60.457 55.000 1.01 0.00 42.47 4.85
201 220 1.167851 CAAAAGAAGGCGATGGCAGA 58.832 50.000 1.01 0.00 42.47 4.26
202 221 1.131883 CAAAAGAAGGCGATGGCAGAG 59.868 52.381 1.01 0.00 42.47 3.35
203 222 0.615331 AAAGAAGGCGATGGCAGAGA 59.385 50.000 1.01 0.00 42.47 3.10
204 223 0.177604 AAGAAGGCGATGGCAGAGAG 59.822 55.000 1.01 0.00 42.47 3.20
205 224 0.685785 AGAAGGCGATGGCAGAGAGA 60.686 55.000 1.01 0.00 42.47 3.10
206 225 0.249405 GAAGGCGATGGCAGAGAGAG 60.249 60.000 1.01 0.00 42.47 3.20
312 331 1.534163 TGTTACTCTCACTCACCGTCG 59.466 52.381 0.00 0.00 0.00 5.12
332 351 2.433318 GACTCACTGACCGCTGCC 60.433 66.667 0.00 0.00 0.00 4.85
333 352 2.919856 ACTCACTGACCGCTGCCT 60.920 61.111 0.00 0.00 0.00 4.75
334 353 2.433838 CTCACTGACCGCTGCCTG 60.434 66.667 0.00 0.00 0.00 4.85
411 430 4.787280 CCTCCCTCCCTCCGCTGT 62.787 72.222 0.00 0.00 0.00 4.40
418 437 1.671901 CTCCCTCCGCTGTCCTTCTC 61.672 65.000 0.00 0.00 0.00 2.87
419 438 1.684049 CCCTCCGCTGTCCTTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
423 442 1.134175 CTCCGCTGTCCTTCTCTCTTC 59.866 57.143 0.00 0.00 0.00 2.87
945 977 1.108132 CCGTAGTAGGAGCAGTCCCC 61.108 65.000 0.00 0.00 45.26 4.81
955 987 3.314331 CAGTCCCCGTCACTGCCT 61.314 66.667 0.00 0.00 35.15 4.75
959 991 4.003788 CCCCGTCACTGCCTCGTT 62.004 66.667 0.00 0.00 0.00 3.85
1020 1052 4.144727 GCGAGAGGGGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1021 1053 2.197324 CGAGAGGGGGAGGAGGAG 59.803 72.222 0.00 0.00 0.00 3.69
1022 1054 2.612251 GAGAGGGGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
1233 1268 3.149648 GCCATCGCCAAGGCCAAT 61.150 61.111 5.01 0.00 45.18 3.16
1236 1271 1.753848 CATCGCCAAGGCCAATCCA 60.754 57.895 5.01 0.00 37.98 3.41
1242 1277 4.759205 AAGGCCAATCCACCCGCC 62.759 66.667 5.01 0.00 41.96 6.13
1368 1409 1.550976 GTAAGGTGGAGTGAGTCAGGG 59.449 57.143 0.00 0.00 0.00 4.45
1369 1410 1.484444 AAGGTGGAGTGAGTCAGGGC 61.484 60.000 0.00 0.00 0.00 5.19
1589 1630 0.601046 GCTGTGCAGTGTCACTAGCA 60.601 55.000 19.65 19.65 39.08 3.49
1614 1670 1.944024 TGAATTCTGACGCGTTTGGTT 59.056 42.857 15.53 5.32 0.00 3.67
1804 1860 3.754850 ACTGAAAACCAACTTATACCGCC 59.245 43.478 0.00 0.00 0.00 6.13
1806 1862 3.502979 TGAAAACCAACTTATACCGCCAC 59.497 43.478 0.00 0.00 0.00 5.01
1811 1867 3.054655 ACCAACTTATACCGCCACAATCT 60.055 43.478 0.00 0.00 0.00 2.40
1824 1880 5.447279 CCGCCACAATCTTACTCATGTAAAC 60.447 44.000 0.00 0.00 38.09 2.01
1847 1918 6.655930 ACCGGTGGATGTTTTATTACAGTAT 58.344 36.000 6.12 0.00 0.00 2.12
1848 1919 7.794041 ACCGGTGGATGTTTTATTACAGTATA 58.206 34.615 6.12 0.00 0.00 1.47
1867 1941 9.871238 ACAGTATAATTCAGTTAGTAACACTGG 57.129 33.333 20.80 8.40 41.83 4.00
1870 1944 9.032420 GTATAATTCAGTTAGTAACACTGGAGC 57.968 37.037 15.28 0.00 41.83 4.70
1871 1945 4.948341 TTCAGTTAGTAACACTGGAGCA 57.052 40.909 15.28 0.00 41.83 4.26
1893 1967 8.985315 AGCACTATTGATCCTAATGAATGAAA 57.015 30.769 0.00 0.00 0.00 2.69
1897 1971 9.584008 ACTATTGATCCTAATGAATGAAATGCT 57.416 29.630 0.00 0.00 0.00 3.79
1900 1974 7.649533 TGATCCTAATGAATGAAATGCTTGT 57.350 32.000 0.00 0.00 0.00 3.16
1901 1975 8.750515 TGATCCTAATGAATGAAATGCTTGTA 57.249 30.769 0.00 0.00 0.00 2.41
1902 1976 8.843262 TGATCCTAATGAATGAAATGCTTGTAG 58.157 33.333 0.00 0.00 0.00 2.74
1908 1982 7.766219 ATGAATGAAATGCTTGTAGAATTGC 57.234 32.000 0.00 0.00 0.00 3.56
1909 1983 6.927416 TGAATGAAATGCTTGTAGAATTGCT 58.073 32.000 0.00 0.00 0.00 3.91
1911 1985 5.710513 TGAAATGCTTGTAGAATTGCTGT 57.289 34.783 0.00 0.00 0.00 4.40
1912 1986 6.088016 TGAAATGCTTGTAGAATTGCTGTT 57.912 33.333 0.00 0.00 0.00 3.16
1913 1987 7.213216 TGAAATGCTTGTAGAATTGCTGTTA 57.787 32.000 0.00 0.00 0.00 2.41
1916 1990 8.885494 AAATGCTTGTAGAATTGCTGTTAAAA 57.115 26.923 0.00 0.00 0.00 1.52
1917 1991 8.524870 AATGCTTGTAGAATTGCTGTTAAAAG 57.475 30.769 0.00 0.00 0.00 2.27
1918 1992 7.038154 TGCTTGTAGAATTGCTGTTAAAAGT 57.962 32.000 0.00 0.00 0.00 2.66
1919 1993 7.488322 TGCTTGTAGAATTGCTGTTAAAAGTT 58.512 30.769 0.00 0.00 0.00 2.66
1920 1994 7.647715 TGCTTGTAGAATTGCTGTTAAAAGTTC 59.352 33.333 0.00 0.00 0.00 3.01
1921 1995 7.114953 GCTTGTAGAATTGCTGTTAAAAGTTCC 59.885 37.037 0.00 0.00 0.00 3.62
1922 1996 7.817418 TGTAGAATTGCTGTTAAAAGTTCCT 57.183 32.000 0.00 0.00 0.00 3.36
1923 1997 8.911918 TGTAGAATTGCTGTTAAAAGTTCCTA 57.088 30.769 0.00 0.00 0.00 2.94
1924 1998 9.344772 TGTAGAATTGCTGTTAAAAGTTCCTAA 57.655 29.630 0.00 0.00 0.00 2.69
1925 1999 9.608617 GTAGAATTGCTGTTAAAAGTTCCTAAC 57.391 33.333 0.00 2.33 0.00 2.34
1926 2000 8.232913 AGAATTGCTGTTAAAAGTTCCTAACA 57.767 30.769 9.14 9.14 36.04 2.41
1927 2001 8.135529 AGAATTGCTGTTAAAAGTTCCTAACAC 58.864 33.333 6.47 5.56 34.02 3.32
1928 2002 6.761099 TTGCTGTTAAAAGTTCCTAACACA 57.239 33.333 6.47 7.29 34.02 3.72
1929 2003 6.952773 TGCTGTTAAAAGTTCCTAACACAT 57.047 33.333 6.47 0.00 34.02 3.21
1930 2004 8.453238 TTGCTGTTAAAAGTTCCTAACACATA 57.547 30.769 6.47 0.00 34.02 2.29
1931 2005 8.453238 TGCTGTTAAAAGTTCCTAACACATAA 57.547 30.769 6.47 0.00 34.02 1.90
1932 2006 8.564574 TGCTGTTAAAAGTTCCTAACACATAAG 58.435 33.333 6.47 0.77 34.02 1.73
1945 2019 3.991605 CACATAAGTGTTGGCGTAGAC 57.008 47.619 0.00 0.00 40.92 2.59
1967 2044 1.254026 TAGTAGCGCTCCAGTGTTGT 58.746 50.000 16.34 0.00 0.00 3.32
2039 2122 3.625764 TGGAGCGCAAATCCAGTAATAAC 59.374 43.478 12.49 0.00 41.96 1.89
2088 2171 8.211629 CCACTCCAAATAGCCTTTAAGTATACT 58.788 37.037 0.00 0.00 0.00 2.12
2089 2172 9.262358 CACTCCAAATAGCCTTTAAGTATACTC 57.738 37.037 5.70 0.00 0.00 2.59
2090 2173 8.430431 ACTCCAAATAGCCTTTAAGTATACTCC 58.570 37.037 5.70 0.00 0.00 3.85
2091 2174 8.326765 TCCAAATAGCCTTTAAGTATACTCCA 57.673 34.615 5.70 0.00 0.00 3.86
2092 2175 8.429641 TCCAAATAGCCTTTAAGTATACTCCAG 58.570 37.037 5.70 2.69 0.00 3.86
2093 2176 8.211629 CCAAATAGCCTTTAAGTATACTCCAGT 58.788 37.037 5.70 0.00 0.00 4.00
2100 2183 9.570488 GCCTTTAAGTATACTCCAGTAATATCG 57.430 37.037 5.70 0.00 33.76 2.92
2110 2193 5.955488 CTCCAGTAATATCGGAGTACATGG 58.045 45.833 0.00 0.00 41.26 3.66
2111 2194 4.219944 TCCAGTAATATCGGAGTACATGGC 59.780 45.833 0.00 0.00 32.01 4.40
2112 2195 4.220821 CCAGTAATATCGGAGTACATGGCT 59.779 45.833 0.00 0.00 30.77 4.75
2113 2196 5.164233 CAGTAATATCGGAGTACATGGCTG 58.836 45.833 0.00 0.00 30.77 4.85
2114 2197 5.048013 CAGTAATATCGGAGTACATGGCTGA 60.048 44.000 0.00 0.00 30.77 4.26
2115 2198 5.717178 AGTAATATCGGAGTACATGGCTGAT 59.283 40.000 0.00 2.49 30.77 2.90
2116 2199 5.489792 AATATCGGAGTACATGGCTGATT 57.510 39.130 0.00 0.00 0.00 2.57
2117 2200 2.602257 TCGGAGTACATGGCTGATTG 57.398 50.000 0.00 0.00 0.00 2.67
2118 2201 1.831106 TCGGAGTACATGGCTGATTGT 59.169 47.619 0.00 0.00 0.00 2.71
2119 2202 3.028130 TCGGAGTACATGGCTGATTGTA 58.972 45.455 0.00 0.00 0.00 2.41
2120 2203 3.449377 TCGGAGTACATGGCTGATTGTAA 59.551 43.478 0.00 0.00 30.59 2.41
2121 2204 4.100963 TCGGAGTACATGGCTGATTGTAAT 59.899 41.667 0.00 0.00 30.59 1.89
2122 2205 4.212004 CGGAGTACATGGCTGATTGTAATG 59.788 45.833 0.00 0.00 30.59 1.90
2123 2206 4.516698 GGAGTACATGGCTGATTGTAATGG 59.483 45.833 0.00 0.00 30.59 3.16
2124 2207 4.464008 AGTACATGGCTGATTGTAATGGG 58.536 43.478 0.00 0.00 30.59 4.00
2125 2208 2.669781 ACATGGCTGATTGTAATGGGG 58.330 47.619 0.00 0.00 0.00 4.96
2126 2209 2.244510 ACATGGCTGATTGTAATGGGGA 59.755 45.455 0.00 0.00 0.00 4.81
2127 2210 2.734755 TGGCTGATTGTAATGGGGAG 57.265 50.000 0.00 0.00 0.00 4.30
2128 2211 1.922447 TGGCTGATTGTAATGGGGAGT 59.078 47.619 0.00 0.00 0.00 3.85
2129 2212 3.119319 TGGCTGATTGTAATGGGGAGTA 58.881 45.455 0.00 0.00 0.00 2.59
2130 2213 3.721575 TGGCTGATTGTAATGGGGAGTAT 59.278 43.478 0.00 0.00 0.00 2.12
2131 2214 4.202461 TGGCTGATTGTAATGGGGAGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2132 2215 4.202461 GGCTGATTGTAATGGGGAGTATCA 60.202 45.833 0.00 0.00 36.25 2.15
2133 2216 5.515534 GGCTGATTGTAATGGGGAGTATCAT 60.516 44.000 0.00 0.00 36.25 2.45
2134 2217 6.296432 GGCTGATTGTAATGGGGAGTATCATA 60.296 42.308 0.00 0.00 36.25 2.15
2135 2218 7.341805 GCTGATTGTAATGGGGAGTATCATAT 58.658 38.462 0.00 0.00 36.25 1.78
2136 2219 8.486210 GCTGATTGTAATGGGGAGTATCATATA 58.514 37.037 0.00 0.00 36.25 0.86
2137 2220 9.823647 CTGATTGTAATGGGGAGTATCATATAC 57.176 37.037 0.00 0.00 36.25 1.47
2138 2221 9.560860 TGATTGTAATGGGGAGTATCATATACT 57.439 33.333 0.00 0.00 36.25 2.12
2145 2228 9.702253 AATGGGGAGTATCATATACTAGTAGTG 57.298 37.037 13.29 9.75 36.25 2.74
2146 2229 8.228353 TGGGGAGTATCATATACTAGTAGTGT 57.772 38.462 13.29 8.94 36.25 3.55
2147 2230 9.342736 TGGGGAGTATCATATACTAGTAGTGTA 57.657 37.037 13.29 10.99 36.25 2.90
2166 2249 8.958506 GTAGTGTATGATACTACCTCCCTAATG 58.041 40.741 4.03 0.00 42.85 1.90
2167 2250 6.437793 AGTGTATGATACTACCTCCCTAATGC 59.562 42.308 4.03 0.00 0.00 3.56
2168 2251 6.210784 GTGTATGATACTACCTCCCTAATGCA 59.789 42.308 4.03 0.00 0.00 3.96
2169 2252 6.959954 TGTATGATACTACCTCCCTAATGCAT 59.040 38.462 4.03 0.00 0.00 3.96
2170 2253 8.119891 TGTATGATACTACCTCCCTAATGCATA 58.880 37.037 0.00 0.00 0.00 3.14
2171 2254 8.978472 GTATGATACTACCTCCCTAATGCATAA 58.022 37.037 0.00 0.00 0.00 1.90
2172 2255 8.629821 ATGATACTACCTCCCTAATGCATAAT 57.370 34.615 0.00 0.00 0.00 1.28
2173 2256 9.729550 ATGATACTACCTCCCTAATGCATAATA 57.270 33.333 0.00 0.00 0.00 0.98
2174 2257 9.729550 TGATACTACCTCCCTAATGCATAATAT 57.270 33.333 0.00 0.00 0.00 1.28
2177 2260 8.219660 ACTACCTCCCTAATGCATAATATTGT 57.780 34.615 0.00 0.00 0.00 2.71
2178 2261 9.333961 ACTACCTCCCTAATGCATAATATTGTA 57.666 33.333 0.00 0.00 0.00 2.41
2181 2264 8.835734 ACCTCCCTAATGCATAATATTGTATCA 58.164 33.333 0.00 0.00 0.00 2.15
2182 2265 9.857656 CCTCCCTAATGCATAATATTGTATCAT 57.142 33.333 0.00 0.00 0.00 2.45
2218 2301 7.827819 TGTAGTACTCTATTTGTTGTCATGC 57.172 36.000 0.00 0.00 0.00 4.06
2219 2302 7.382898 TGTAGTACTCTATTTGTTGTCATGCA 58.617 34.615 0.00 0.00 0.00 3.96
2220 2303 8.040727 TGTAGTACTCTATTTGTTGTCATGCAT 58.959 33.333 0.00 0.00 0.00 3.96
2221 2304 7.312657 AGTACTCTATTTGTTGTCATGCATG 57.687 36.000 21.07 21.07 0.00 4.06
2222 2305 6.881065 AGTACTCTATTTGTTGTCATGCATGT 59.119 34.615 25.43 6.98 0.00 3.21
2223 2306 6.187125 ACTCTATTTGTTGTCATGCATGTC 57.813 37.500 25.43 20.50 0.00 3.06
2224 2307 5.706833 ACTCTATTTGTTGTCATGCATGTCA 59.293 36.000 25.43 22.87 0.00 3.58
2225 2308 5.941733 TCTATTTGTTGTCATGCATGTCAC 58.058 37.500 23.43 17.00 0.00 3.67
2226 2309 4.587584 ATTTGTTGTCATGCATGTCACA 57.412 36.364 23.43 19.23 0.00 3.58
2227 2310 4.382345 TTTGTTGTCATGCATGTCACAA 57.618 36.364 23.43 23.23 0.00 3.33
2228 2311 4.382345 TTGTTGTCATGCATGTCACAAA 57.618 36.364 26.55 19.69 30.73 2.83
2229 2312 3.967401 TGTTGTCATGCATGTCACAAAG 58.033 40.909 26.55 3.23 30.73 2.77
2230 2313 3.380954 TGTTGTCATGCATGTCACAAAGT 59.619 39.130 26.55 0.00 30.73 2.66
2231 2314 4.578105 TGTTGTCATGCATGTCACAAAGTA 59.422 37.500 26.55 17.00 30.73 2.24
2232 2315 5.149273 GTTGTCATGCATGTCACAAAGTAG 58.851 41.667 26.55 1.42 30.73 2.57
2233 2316 3.189080 TGTCATGCATGTCACAAAGTAGC 59.811 43.478 25.43 4.48 0.00 3.58
2234 2317 3.189080 GTCATGCATGTCACAAAGTAGCA 59.811 43.478 25.43 0.00 34.78 3.49
2235 2318 4.011698 TCATGCATGTCACAAAGTAGCAT 58.988 39.130 25.43 0.00 41.42 3.79
2236 2319 5.065090 GTCATGCATGTCACAAAGTAGCATA 59.935 40.000 25.43 0.00 39.00 3.14
2237 2320 5.647225 TCATGCATGTCACAAAGTAGCATAA 59.353 36.000 25.43 0.00 39.00 1.90
2238 2321 5.295431 TGCATGTCACAAAGTAGCATAAC 57.705 39.130 0.00 0.00 0.00 1.89
2239 2322 4.759183 TGCATGTCACAAAGTAGCATAACA 59.241 37.500 0.00 0.00 0.00 2.41
2240 2323 5.415389 TGCATGTCACAAAGTAGCATAACAT 59.585 36.000 0.00 0.00 0.00 2.71
2241 2324 6.072008 TGCATGTCACAAAGTAGCATAACATT 60.072 34.615 0.00 0.00 0.00 2.71
2242 2325 6.808212 GCATGTCACAAAGTAGCATAACATTT 59.192 34.615 0.00 0.00 0.00 2.32
2243 2326 7.967854 GCATGTCACAAAGTAGCATAACATTTA 59.032 33.333 0.00 0.00 0.00 1.40
2280 2363 5.908590 TCATGATATGATACTCCACCCTCT 58.091 41.667 0.00 0.00 33.59 3.69
2281 2364 6.326161 TCATGATATGATACTCCACCCTCTT 58.674 40.000 0.00 0.00 33.59 2.85
2282 2365 6.789457 TCATGATATGATACTCCACCCTCTTT 59.211 38.462 0.00 0.00 33.59 2.52
2283 2366 7.293299 TCATGATATGATACTCCACCCTCTTTT 59.707 37.037 0.00 0.00 33.59 2.27
2284 2367 7.451731 TGATATGATACTCCACCCTCTTTTT 57.548 36.000 0.00 0.00 0.00 1.94
2285 2368 7.509546 TGATATGATACTCCACCCTCTTTTTC 58.490 38.462 0.00 0.00 0.00 2.29
2286 2369 7.348274 TGATATGATACTCCACCCTCTTTTTCT 59.652 37.037 0.00 0.00 0.00 2.52
2287 2370 5.843019 TGATACTCCACCCTCTTTTTCTT 57.157 39.130 0.00 0.00 0.00 2.52
2288 2371 5.805728 TGATACTCCACCCTCTTTTTCTTC 58.194 41.667 0.00 0.00 0.00 2.87
2289 2372 5.309543 TGATACTCCACCCTCTTTTTCTTCA 59.690 40.000 0.00 0.00 0.00 3.02
2290 2373 4.731313 ACTCCACCCTCTTTTTCTTCAT 57.269 40.909 0.00 0.00 0.00 2.57
2291 2374 5.066913 ACTCCACCCTCTTTTTCTTCATT 57.933 39.130 0.00 0.00 0.00 2.57
2292 2375 5.458595 ACTCCACCCTCTTTTTCTTCATTT 58.541 37.500 0.00 0.00 0.00 2.32
2293 2376 6.610830 ACTCCACCCTCTTTTTCTTCATTTA 58.389 36.000 0.00 0.00 0.00 1.40
2294 2377 7.066781 ACTCCACCCTCTTTTTCTTCATTTAA 58.933 34.615 0.00 0.00 0.00 1.52
2295 2378 7.730332 ACTCCACCCTCTTTTTCTTCATTTAAT 59.270 33.333 0.00 0.00 0.00 1.40
2296 2379 7.895759 TCCACCCTCTTTTTCTTCATTTAATG 58.104 34.615 0.00 0.00 0.00 1.90
2297 2380 7.508977 TCCACCCTCTTTTTCTTCATTTAATGT 59.491 33.333 4.77 0.00 0.00 2.71
2298 2381 8.150296 CCACCCTCTTTTTCTTCATTTAATGTT 58.850 33.333 4.77 0.00 0.00 2.71
2319 2402 7.872163 TGTTATGACACTTCATCAAAATTGC 57.128 32.000 0.00 0.00 41.87 3.56
2320 2403 7.432059 TGTTATGACACTTCATCAAAATTGCA 58.568 30.769 0.00 0.00 41.87 4.08
2321 2404 8.089597 TGTTATGACACTTCATCAAAATTGCAT 58.910 29.630 0.00 0.00 41.87 3.96
2322 2405 9.571810 GTTATGACACTTCATCAAAATTGCATA 57.428 29.630 0.00 0.00 41.87 3.14
2323 2406 9.791820 TTATGACACTTCATCAAAATTGCATAG 57.208 29.630 0.00 0.00 41.87 2.23
2324 2407 7.218228 TGACACTTCATCAAAATTGCATAGT 57.782 32.000 0.00 0.00 0.00 2.12
2325 2408 7.660112 TGACACTTCATCAAAATTGCATAGTT 58.340 30.769 0.00 0.00 0.00 2.24
2326 2409 7.595875 TGACACTTCATCAAAATTGCATAGTTG 59.404 33.333 0.00 0.00 0.00 3.16
2327 2410 6.869913 ACACTTCATCAAAATTGCATAGTTGG 59.130 34.615 0.00 0.00 0.00 3.77
2328 2411 5.870978 ACTTCATCAAAATTGCATAGTTGGC 59.129 36.000 0.00 0.00 0.00 4.52
2329 2412 5.402997 TCATCAAAATTGCATAGTTGGCA 57.597 34.783 0.00 0.00 40.00 4.92
2330 2413 5.979993 TCATCAAAATTGCATAGTTGGCAT 58.020 33.333 0.00 0.00 41.58 4.40
2331 2414 5.813157 TCATCAAAATTGCATAGTTGGCATG 59.187 36.000 0.00 0.00 41.58 4.06
2339 2422 3.829948 GCATAGTTGGCATGCATGATAC 58.170 45.455 30.64 21.28 46.47 2.24
2340 2423 3.504906 GCATAGTTGGCATGCATGATACT 59.495 43.478 30.64 26.11 46.47 2.12
2341 2424 4.696877 GCATAGTTGGCATGCATGATACTA 59.303 41.667 30.64 27.15 46.47 1.82
2342 2425 5.163784 GCATAGTTGGCATGCATGATACTAG 60.164 44.000 30.64 21.29 46.47 2.57
2343 2426 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
2344 2427 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
2345 2428 2.774687 TGGCATGCATGATACTAGCTG 58.225 47.619 30.64 1.04 0.00 4.24
2346 2429 2.105306 TGGCATGCATGATACTAGCTGT 59.895 45.455 30.64 0.00 0.00 4.40
2347 2430 2.483106 GGCATGCATGATACTAGCTGTG 59.517 50.000 30.64 0.23 0.00 3.66
2348 2431 3.396560 GCATGCATGATACTAGCTGTGA 58.603 45.455 30.64 0.00 0.00 3.58
2349 2432 4.001652 GCATGCATGATACTAGCTGTGAT 58.998 43.478 30.64 0.00 0.00 3.06
2350 2433 5.173664 GCATGCATGATACTAGCTGTGATA 58.826 41.667 30.64 0.00 0.00 2.15
2351 2434 5.063186 GCATGCATGATACTAGCTGTGATAC 59.937 44.000 30.64 2.07 0.00 2.24
2352 2435 6.396450 CATGCATGATACTAGCTGTGATACT 58.604 40.000 22.59 0.00 0.00 2.12
2353 2436 7.542025 CATGCATGATACTAGCTGTGATACTA 58.458 38.462 22.59 0.00 0.00 1.82
2354 2437 6.914259 TGCATGATACTAGCTGTGATACTAC 58.086 40.000 0.00 0.00 0.00 2.73
2355 2438 6.071896 TGCATGATACTAGCTGTGATACTACC 60.072 42.308 0.00 0.00 0.00 3.18
2356 2439 6.071896 GCATGATACTAGCTGTGATACTACCA 60.072 42.308 0.00 0.00 0.00 3.25
2357 2440 7.363355 GCATGATACTAGCTGTGATACTACCAT 60.363 40.741 0.00 0.00 0.00 3.55
2358 2441 8.526978 CATGATACTAGCTGTGATACTACCATT 58.473 37.037 0.00 0.00 0.00 3.16
2359 2442 9.755122 ATGATACTAGCTGTGATACTACCATTA 57.245 33.333 0.00 0.00 0.00 1.90
2360 2443 9.011095 TGATACTAGCTGTGATACTACCATTAC 57.989 37.037 0.00 0.00 0.00 1.89
2361 2444 6.315091 ACTAGCTGTGATACTACCATTACG 57.685 41.667 0.00 0.00 0.00 3.18
2362 2445 6.060136 ACTAGCTGTGATACTACCATTACGA 58.940 40.000 0.00 0.00 0.00 3.43
2363 2446 5.184340 AGCTGTGATACTACCATTACGAC 57.816 43.478 0.00 0.00 0.00 4.34
2364 2447 4.037684 AGCTGTGATACTACCATTACGACC 59.962 45.833 0.00 0.00 0.00 4.79
2365 2448 4.202080 GCTGTGATACTACCATTACGACCA 60.202 45.833 0.00 0.00 0.00 4.02
2366 2449 5.509716 TGTGATACTACCATTACGACCAG 57.490 43.478 0.00 0.00 0.00 4.00
2367 2450 4.202080 TGTGATACTACCATTACGACCAGC 60.202 45.833 0.00 0.00 0.00 4.85
2375 2458 1.139058 CATTACGACCAGCCTTAGCCT 59.861 52.381 0.00 0.00 41.25 4.58
2506 2590 5.443185 TTCAAATATACTACCTCCGTCCG 57.557 43.478 0.00 0.00 0.00 4.79
2507 2591 3.822735 TCAAATATACTACCTCCGTCCGG 59.177 47.826 0.00 0.00 0.00 5.14
2508 2592 2.503895 ATATACTACCTCCGTCCGGG 57.496 55.000 0.00 0.00 35.59 5.73
2510 2594 0.259938 ATACTACCTCCGTCCGGGTT 59.740 55.000 0.00 0.00 37.07 4.11
2514 2598 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
2517 2601 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
2520 2604 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
2521 2605 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
2524 2608 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
2525 2609 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
2526 2610 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
2527 2611 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
2533 2618 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
2535 2620 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
2536 2621 2.365582 GTCCCCATTGTATTTCGTGCT 58.634 47.619 0.00 0.00 0.00 4.40
2537 2622 3.537580 GTCCCCATTGTATTTCGTGCTA 58.462 45.455 0.00 0.00 0.00 3.49
2540 2625 5.067283 GTCCCCATTGTATTTCGTGCTAAAT 59.933 40.000 0.00 0.00 33.69 1.40
2544 2629 7.201513 CCCCATTGTATTTCGTGCTAAATTTTG 60.202 37.037 0.00 0.00 31.63 2.44
2548 2633 6.971602 TGTATTTCGTGCTAAATTTTGACCA 58.028 32.000 3.69 0.00 31.63 4.02
2549 2634 7.598278 TGTATTTCGTGCTAAATTTTGACCAT 58.402 30.769 3.69 0.00 31.63 3.55
2551 2636 9.221775 GTATTTCGTGCTAAATTTTGACCATAG 57.778 33.333 3.69 0.00 31.63 2.23
2556 2641 9.168451 TCGTGCTAAATTTTGACCATAGATTAA 57.832 29.630 3.69 0.00 0.00 1.40
2574 2659 9.988350 ATAGATTAAACTAACAAAATGCTCACG 57.012 29.630 0.00 0.00 0.00 4.35
2575 2660 6.801862 AGATTAAACTAACAAAATGCTCACGC 59.198 34.615 0.00 0.00 0.00 5.34
2585 2670 1.227793 TGCTCACGCATGTCACCAA 60.228 52.632 0.00 0.00 42.25 3.67
2587 2672 0.385974 GCTCACGCATGTCACCAAAC 60.386 55.000 0.00 0.00 35.78 2.93
2589 2674 1.536766 CTCACGCATGTCACCAAACAT 59.463 47.619 0.00 0.00 40.49 2.71
2590 2675 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
2592 2677 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
2594 2679 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
2595 2680 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
2599 2684 8.320295 CGCATGTCACCAAACATTATATTTTTC 58.680 33.333 0.00 0.00 37.78 2.29
2625 2710 9.619316 CAAAACTATGTTCAAATACGAATCCAA 57.381 29.630 0.00 0.00 0.00 3.53
2629 2714 8.830580 ACTATGTTCAAATACGAATCCAATGAG 58.169 33.333 0.00 0.00 0.00 2.90
2642 2727 9.793252 ACGAATCCAATGAGATAATTTTTCTTG 57.207 29.630 0.00 0.00 0.00 3.02
2648 2733 8.814235 CCAATGAGATAATTTTTCTTGACATGC 58.186 33.333 0.00 0.00 0.00 4.06
2649 2734 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
2705 2790 0.966179 GGCACAAACTACAAAGGGGG 59.034 55.000 0.00 0.00 0.00 5.40
2712 2798 4.292836 ACAAACTACAAAGGGGGCCTATAA 59.707 41.667 0.84 0.00 31.13 0.98
2714 2800 4.515028 ACTACAAAGGGGGCCTATAAAC 57.485 45.455 0.84 0.00 31.13 2.01
2715 2801 2.840640 ACAAAGGGGGCCTATAAACC 57.159 50.000 0.84 0.00 31.13 3.27
2716 2802 2.004589 ACAAAGGGGGCCTATAAACCA 58.995 47.619 0.84 0.00 31.13 3.67
2720 2806 0.477204 GGGGGCCTATAAACCAGGAC 59.523 60.000 0.84 0.00 40.90 3.85
2726 2812 2.395619 CCTATAAACCAGGACGGAGGT 58.604 52.381 0.00 0.00 40.61 3.85
2731 2817 1.844687 AACCAGGACGGAGGTAGTAC 58.155 55.000 0.00 0.00 37.07 2.73
2732 2818 0.998145 ACCAGGACGGAGGTAGTACT 59.002 55.000 0.00 0.00 36.07 2.73
2733 2819 1.357079 ACCAGGACGGAGGTAGTACTT 59.643 52.381 0.00 0.00 36.07 2.24
2735 2821 2.830321 CCAGGACGGAGGTAGTACTTTT 59.170 50.000 0.00 0.00 36.56 2.27
2736 2822 3.368116 CCAGGACGGAGGTAGTACTTTTG 60.368 52.174 0.00 0.00 36.56 2.44
2738 2824 4.460382 CAGGACGGAGGTAGTACTTTTGTA 59.540 45.833 0.00 0.00 28.49 2.41
2739 2825 5.047802 CAGGACGGAGGTAGTACTTTTGTAA 60.048 44.000 0.00 0.00 36.56 2.41
2740 2826 5.184671 AGGACGGAGGTAGTACTTTTGTAAG 59.815 44.000 0.00 0.00 36.56 2.34
2741 2827 5.047731 GGACGGAGGTAGTACTTTTGTAAGT 60.048 44.000 0.00 0.00 46.18 2.24
2742 2828 6.151144 GGACGGAGGTAGTACTTTTGTAAGTA 59.849 42.308 0.00 0.00 42.73 2.24
2743 2829 7.150783 ACGGAGGTAGTACTTTTGTAAGTAG 57.849 40.000 0.00 0.00 45.12 2.57
2744 2830 6.151817 ACGGAGGTAGTACTTTTGTAAGTAGG 59.848 42.308 0.00 0.00 45.12 3.18
2776 2862 4.737601 GCACGTTGCATCCGTTAC 57.262 55.556 8.99 2.20 44.26 2.50
2777 2863 2.159181 GCACGTTGCATCCGTTACT 58.841 52.632 8.99 0.00 44.26 2.24
2778 2864 1.352114 GCACGTTGCATCCGTTACTA 58.648 50.000 8.99 0.00 44.26 1.82
2779 2865 1.060122 GCACGTTGCATCCGTTACTAC 59.940 52.381 8.99 0.00 44.26 2.73
2804 2892 4.844349 ACCTACCAAGATGTGCACTAAT 57.156 40.909 19.41 3.51 0.00 1.73
2828 2916 5.877564 TGATCAAACTTATGTGCCGAATGTA 59.122 36.000 0.00 0.00 0.00 2.29
2841 2929 7.767261 TGTGCCGAATGTAGCTAATTAATTTT 58.233 30.769 5.91 0.00 0.00 1.82
2842 2930 7.700234 TGTGCCGAATGTAGCTAATTAATTTTG 59.300 33.333 5.91 1.60 0.00 2.44
2866 2954 5.250982 TCATGAACTCAAGACATGATTGCT 58.749 37.500 0.00 0.00 43.17 3.91
2875 2963 5.766670 TCAAGACATGATTGCTCTGAACTTT 59.233 36.000 0.00 0.00 31.50 2.66
2879 2967 6.883217 AGACATGATTGCTCTGAACTTTACAT 59.117 34.615 0.00 0.00 0.00 2.29
2883 2971 5.241285 TGATTGCTCTGAACTTTACATTGCA 59.759 36.000 0.00 0.00 0.00 4.08
2884 2972 5.512753 TTGCTCTGAACTTTACATTGCAA 57.487 34.783 0.00 0.00 35.17 4.08
2901 2989 1.959042 CAATATGCGCCCTTCTCACT 58.041 50.000 4.18 0.00 0.00 3.41
2903 2991 1.959042 ATATGCGCCCTTCTCACTTG 58.041 50.000 4.18 0.00 0.00 3.16
2904 2992 0.613260 TATGCGCCCTTCTCACTTGT 59.387 50.000 4.18 0.00 0.00 3.16
2911 2999 3.927142 CGCCCTTCTCACTTGTTACTAAG 59.073 47.826 0.00 0.00 0.00 2.18
2933 3137 6.937436 AGTAAACACTGAAGTTACCAAAGG 57.063 37.500 0.00 0.00 0.00 3.11
2941 3145 6.710744 CACTGAAGTTACCAAAGGTAGAACAT 59.289 38.462 5.05 0.00 39.52 2.71
2942 3146 7.228706 CACTGAAGTTACCAAAGGTAGAACATT 59.771 37.037 5.05 0.00 39.52 2.71
2951 3155 7.231467 ACCAAAGGTAGAACATTGTGTAGAAT 58.769 34.615 0.00 0.00 32.11 2.40
2953 3157 9.226606 CCAAAGGTAGAACATTGTGTAGAATAA 57.773 33.333 0.00 0.00 0.00 1.40
2994 3201 5.188434 TGATTCAACTAGCTGGAAGGATTG 58.812 41.667 3.17 0.00 0.00 2.67
3033 3250 3.444388 TGTGCTTTTACCCGAAAAACAGT 59.556 39.130 0.00 0.00 34.56 3.55
3036 3253 3.551454 GCTTTTACCCGAAAAACAGTCCC 60.551 47.826 0.00 0.00 36.59 4.46
3040 3257 1.235724 CCCGAAAAACAGTCCCTGTC 58.764 55.000 0.00 0.00 44.62 3.51
3045 3262 3.541632 GAAAAACAGTCCCTGTCAGTGA 58.458 45.455 0.00 0.00 44.62 3.41
3046 3263 3.644966 AAAACAGTCCCTGTCAGTGAA 57.355 42.857 0.00 0.00 44.62 3.18
3047 3264 2.622064 AACAGTCCCTGTCAGTGAAC 57.378 50.000 0.00 0.00 44.62 3.18
3048 3265 1.794714 ACAGTCCCTGTCAGTGAACT 58.205 50.000 0.00 0.00 41.21 3.01
3049 3266 1.414181 ACAGTCCCTGTCAGTGAACTG 59.586 52.381 16.77 16.77 41.21 3.16
3050 3267 0.394565 AGTCCCTGTCAGTGAACTGC 59.605 55.000 5.55 2.32 43.46 4.40
3051 3268 0.394565 GTCCCTGTCAGTGAACTGCT 59.605 55.000 5.55 0.00 43.46 4.24
3052 3269 0.681733 TCCCTGTCAGTGAACTGCTC 59.318 55.000 5.55 2.71 43.46 4.26
3053 3270 0.668706 CCCTGTCAGTGAACTGCTCG 60.669 60.000 5.55 0.00 43.46 5.03
3054 3271 0.315251 CCTGTCAGTGAACTGCTCGA 59.685 55.000 5.55 0.00 43.46 4.04
3055 3272 1.413382 CTGTCAGTGAACTGCTCGAC 58.587 55.000 5.55 0.00 43.46 4.20
3056 3273 0.744281 TGTCAGTGAACTGCTCGACA 59.256 50.000 5.55 2.50 43.46 4.35
3059 3276 1.409064 TCAGTGAACTGCTCGACACTT 59.591 47.619 5.55 0.00 43.46 3.16
3061 3278 2.726760 CAGTGAACTGCTCGACACTTAC 59.273 50.000 1.67 0.00 40.84 2.34
3101 3320 3.381983 ATGACGAGCAGGCCACGA 61.382 61.111 5.01 0.00 0.00 4.35
3104 3323 4.148825 ACGAGCAGGCCACGATCC 62.149 66.667 5.01 0.00 0.00 3.36
3118 3337 3.559504 CACGATCCGATCTGTACATCAG 58.440 50.000 6.81 0.00 44.85 2.90
3143 3362 0.103208 CGGCACTTCGGAAGCTAGAT 59.897 55.000 17.37 0.00 0.00 1.98
3166 3385 4.274214 TCACATGCTTCTTGTGAGTTCAAG 59.726 41.667 10.29 0.00 46.31 3.02
3177 3396 7.429633 TCTTGTGAGTTCAAGAACAACAAAAA 58.570 30.769 22.83 16.07 46.88 1.94
3219 3438 6.073927 ACGAACGAACTAGGAAACATCTTTTC 60.074 38.462 0.14 0.00 0.00 2.29
3220 3439 6.145696 CGAACGAACTAGGAAACATCTTTTCT 59.854 38.462 0.00 0.00 0.00 2.52
3221 3440 6.787085 ACGAACTAGGAAACATCTTTTCTG 57.213 37.500 0.00 0.00 0.00 3.02
3223 3442 6.424207 ACGAACTAGGAAACATCTTTTCTGAC 59.576 38.462 0.00 0.00 0.00 3.51
3225 3444 6.097915 ACTAGGAAACATCTTTTCTGACGA 57.902 37.500 0.00 0.00 0.00 4.20
3287 3506 2.161030 GAGACACGGAGTTCTGGTACT 58.839 52.381 0.00 0.00 41.61 2.73
3572 3795 1.461127 CACACGCTCTACTTTCTTGGC 59.539 52.381 0.00 0.00 0.00 4.52
3601 3824 2.222931 TGCGTTTTCTGACGAACACTTG 60.223 45.455 1.15 0.00 45.47 3.16
3895 4118 0.902516 AGGGCCTCCTCATATCGCTC 60.903 60.000 0.00 0.00 39.80 5.03
3910 4133 1.682257 GCTCAAGCAGAGGTTCCCT 59.318 57.895 8.09 0.00 44.86 4.20
3913 4136 1.676967 CAAGCAGAGGTTCCCTGGC 60.677 63.158 0.00 0.00 31.76 4.85
3977 4200 0.749649 GGTTTGCCAATGGTGTCACA 59.250 50.000 5.12 0.00 34.09 3.58
3982 4206 0.318955 GCCAATGGTGTCACAGCAAC 60.319 55.000 14.86 0.30 44.96 4.17
3998 4222 4.943705 ACAGCAACATAATCTCCATCGTTT 59.056 37.500 0.00 0.00 0.00 3.60
4000 4224 6.597672 ACAGCAACATAATCTCCATCGTTTAA 59.402 34.615 0.00 0.00 0.00 1.52
4033 4282 6.734137 TGGTGTGACATTTTACTTTGATGAC 58.266 36.000 0.00 0.00 0.00 3.06
4123 4372 2.024871 CGGATCGACGACCTGCTC 59.975 66.667 0.00 0.00 35.47 4.26
4541 4790 3.138884 ACCTTGTGTATCATGTGTGCA 57.861 42.857 0.00 0.00 0.00 4.57
4595 4844 2.112087 TAAGTGCGGTGCTTGGCA 59.888 55.556 0.00 0.00 36.70 4.92
4636 4885 4.404073 TGTAATGTTTTGGCACTTGGAAGT 59.596 37.500 0.00 0.00 40.60 3.01
4651 4900 5.765182 ACTTGGAAGTAAGGTTGTCAGAATG 59.235 40.000 0.00 0.00 37.52 2.67
4658 4907 4.647564 AAGGTTGTCAGAATGGTGATCT 57.352 40.909 0.00 0.00 36.16 2.75
4667 4916 7.619965 TGTCAGAATGGTGATCTTGTTATACA 58.380 34.615 0.00 0.00 36.16 2.29
4672 4921 9.685276 AGAATGGTGATCTTGTTATACAATTCA 57.315 29.630 8.92 0.00 37.48 2.57
4673 4922 9.722056 GAATGGTGATCTTGTTATACAATTCAC 57.278 33.333 18.12 18.12 43.23 3.18
4683 4932 9.741168 CTTGTTATACAATTCACTGACTTTACG 57.259 33.333 0.00 0.00 37.48 3.18
4693 4942 6.335471 TCACTGACTTTACGATCCAAACTA 57.665 37.500 0.00 0.00 0.00 2.24
4698 4947 6.527423 TGACTTTACGATCCAAACTAACCTT 58.473 36.000 0.00 0.00 0.00 3.50
4710 4959 8.754991 TCCAAACTAACCTTTTTGATTCTACA 57.245 30.769 0.00 0.00 35.13 2.74
4806 5055 9.070179 TCAAAACTCTGATCTGATTCAAAATCA 57.930 29.630 2.43 9.73 0.00 2.57
4807 5056 9.343103 CAAAACTCTGATCTGATTCAAAATCAG 57.657 33.333 21.73 21.73 44.13 2.90
4813 5062 8.050930 TCTGATCTGATTCAAAATCAGGATTCA 58.949 33.333 24.54 20.39 43.36 2.57
4819 5068 8.357290 TGATTCAAAATCAGGATTCAGACAAT 57.643 30.769 0.00 0.00 0.00 2.71
4850 5099 3.451793 TGCCATCGCATAGACGTTT 57.548 47.368 0.00 0.00 41.12 3.60
4861 5110 2.307496 TAGACGTTTGGGAGGTACCA 57.693 50.000 15.94 0.00 41.20 3.25
4901 5150 8.028354 TGATGTTCAATCGAGTAAATTGCAAAT 58.972 29.630 1.71 0.00 34.73 2.32
4980 5241 1.975660 AAACACCGCCACTATTGTGT 58.024 45.000 6.55 0.00 43.36 3.72
5286 5549 0.324830 AGGAACTCCTCTTCCCTCGG 60.325 60.000 0.00 0.00 44.77 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.749063 GGCTATGGTTGTTTAGTGGCC 59.251 52.381 0.00 0.00 0.00 5.36
1 2 2.442413 TGGCTATGGTTGTTTAGTGGC 58.558 47.619 0.00 0.00 0.00 5.01
2 3 3.632145 GGATGGCTATGGTTGTTTAGTGG 59.368 47.826 0.00 0.00 0.00 4.00
22 23 1.592400 ATTCCTCGTTGCGTCTCGGA 61.592 55.000 0.00 0.00 0.00 4.55
25 26 1.855360 GATGATTCCTCGTTGCGTCTC 59.145 52.381 0.00 0.00 0.00 3.36
28 29 2.093306 TTGATGATTCCTCGTTGCGT 57.907 45.000 0.00 0.00 0.00 5.24
67 72 3.502211 AGGGTTTGCACGTTAGAAATCTG 59.498 43.478 0.00 0.00 0.00 2.90
152 171 3.775654 GTCGAGGGCTGGTCTGGG 61.776 72.222 0.00 0.00 0.00 4.45
153 172 2.997315 TGTCGAGGGCTGGTCTGG 60.997 66.667 0.00 0.00 0.00 3.86
154 173 2.575993 CTGTCGAGGGCTGGTCTG 59.424 66.667 0.00 0.00 0.00 3.51
199 218 6.948886 ACGTATCTATCTCTCTCTCTCTCTCT 59.051 42.308 0.00 0.00 0.00 3.10
200 219 7.159322 ACGTATCTATCTCTCTCTCTCTCTC 57.841 44.000 0.00 0.00 0.00 3.20
201 220 8.107729 TCTACGTATCTATCTCTCTCTCTCTCT 58.892 40.741 0.00 0.00 0.00 3.10
202 221 8.277490 TCTACGTATCTATCTCTCTCTCTCTC 57.723 42.308 0.00 0.00 0.00 3.20
203 222 8.107729 TCTCTACGTATCTATCTCTCTCTCTCT 58.892 40.741 0.00 0.00 0.00 3.10
204 223 8.277490 TCTCTACGTATCTATCTCTCTCTCTC 57.723 42.308 0.00 0.00 0.00 3.20
205 224 8.107729 TCTCTCTACGTATCTATCTCTCTCTCT 58.892 40.741 0.00 0.00 0.00 3.10
206 225 8.277490 TCTCTCTACGTATCTATCTCTCTCTC 57.723 42.308 0.00 0.00 0.00 3.20
312 331 1.735920 CAGCGGTCAGTGAGTCTGC 60.736 63.158 6.47 6.47 43.32 4.26
411 430 3.835395 GAGGTGAAAGGAAGAGAGAAGGA 59.165 47.826 0.00 0.00 0.00 3.36
418 437 6.247727 GCTTAAAAGAGGTGAAAGGAAGAG 57.752 41.667 0.00 0.00 0.00 2.85
910 929 2.807622 GGGATTGATTGGTGGCGC 59.192 61.111 0.00 0.00 0.00 6.53
916 935 3.555168 GCTCCTACTACGGGATTGATTGG 60.555 52.174 0.00 0.00 31.89 3.16
945 977 2.661537 TGCAACGAGGCAGTGACG 60.662 61.111 0.00 0.00 39.25 4.35
971 1003 0.459237 CTACCGAGGAGCAAGCACAG 60.459 60.000 0.00 0.00 0.00 3.66
1178 1213 3.197790 CGCAGGTCTTGATGGCGG 61.198 66.667 0.00 0.00 43.63 6.13
1221 1256 3.451894 GGTGGATTGGCCTTGGCG 61.452 66.667 3.32 0.00 37.63 5.69
1242 1277 3.878667 GGGATCTCCTTGCCGGGG 61.879 72.222 2.18 0.00 35.95 5.73
1402 1443 4.340246 CACCTCTGCAGCCAGCCA 62.340 66.667 9.47 0.00 44.83 4.75
1539 1580 1.475682 GGCCCAGAAGAAAGCAGAATG 59.524 52.381 0.00 0.00 40.87 2.67
1546 1587 4.009015 GGCAGGCCCAGAAGAAAG 57.991 61.111 0.00 0.00 0.00 2.62
1589 1630 2.949451 ACGCGTCAGAATTCATCTCT 57.051 45.000 5.58 0.00 35.73 3.10
1614 1670 2.269520 AATATGGTCGCTGCAGCCCA 62.270 55.000 30.88 30.88 36.92 5.36
1766 1822 3.402628 TCAGTTACCTCAAGCCTTGTC 57.597 47.619 4.04 0.00 0.00 3.18
1798 1854 3.196901 ACATGAGTAAGATTGTGGCGGTA 59.803 43.478 0.00 0.00 0.00 4.02
1804 1860 5.642063 ACCGGTTTACATGAGTAAGATTGTG 59.358 40.000 0.00 0.00 41.00 3.33
1806 1862 5.064707 CCACCGGTTTACATGAGTAAGATTG 59.935 44.000 2.97 0.00 41.00 2.67
1811 1867 4.020039 ACATCCACCGGTTTACATGAGTAA 60.020 41.667 2.97 0.00 38.40 2.24
1824 1880 8.665643 TTATACTGTAATAAAACATCCACCGG 57.334 34.615 0.00 0.00 0.00 5.28
1847 1918 6.872020 GTGCTCCAGTGTTACTAACTGAATTA 59.128 38.462 5.17 0.00 46.55 1.40
1848 1919 5.701290 GTGCTCCAGTGTTACTAACTGAATT 59.299 40.000 5.17 0.00 46.55 2.17
1856 1930 6.183360 GGATCAATAGTGCTCCAGTGTTACTA 60.183 42.308 8.13 0.00 39.47 1.82
1862 1936 3.834489 AGGATCAATAGTGCTCCAGTG 57.166 47.619 14.85 0.00 41.72 3.66
1864 1938 6.106648 TCATTAGGATCAATAGTGCTCCAG 57.893 41.667 14.85 2.94 41.72 3.86
1865 1939 6.499106 TTCATTAGGATCAATAGTGCTCCA 57.501 37.500 14.85 0.00 41.72 3.86
1866 1940 7.164122 TCATTCATTAGGATCAATAGTGCTCC 58.836 38.462 4.91 4.91 39.90 4.70
1867 1941 8.613060 TTCATTCATTAGGATCAATAGTGCTC 57.387 34.615 0.00 0.00 0.00 4.26
1868 1942 8.985315 TTTCATTCATTAGGATCAATAGTGCT 57.015 30.769 0.00 0.00 0.00 4.40
1869 1943 9.622004 CATTTCATTCATTAGGATCAATAGTGC 57.378 33.333 0.00 0.00 0.00 4.40
1870 1944 9.622004 GCATTTCATTCATTAGGATCAATAGTG 57.378 33.333 0.00 0.00 0.00 2.74
1871 1945 9.584008 AGCATTTCATTCATTAGGATCAATAGT 57.416 29.630 0.00 0.00 0.00 2.12
1888 1962 6.276832 ACAGCAATTCTACAAGCATTTCAT 57.723 33.333 0.00 0.00 0.00 2.57
1889 1963 5.710513 ACAGCAATTCTACAAGCATTTCA 57.289 34.783 0.00 0.00 0.00 2.69
1893 1967 7.661040 ACTTTTAACAGCAATTCTACAAGCAT 58.339 30.769 0.00 0.00 0.00 3.79
1897 1971 8.232913 AGGAACTTTTAACAGCAATTCTACAA 57.767 30.769 0.00 0.00 27.25 2.41
1898 1972 7.817418 AGGAACTTTTAACAGCAATTCTACA 57.183 32.000 0.00 0.00 27.25 2.74
1899 1973 9.608617 GTTAGGAACTTTTAACAGCAATTCTAC 57.391 33.333 0.00 0.00 41.75 2.59
1900 1974 9.344772 TGTTAGGAACTTTTAACAGCAATTCTA 57.655 29.630 0.00 0.00 41.75 2.10
1901 1975 8.135529 GTGTTAGGAACTTTTAACAGCAATTCT 58.864 33.333 0.00 0.00 39.63 2.40
1902 1976 7.918562 TGTGTTAGGAACTTTTAACAGCAATTC 59.081 33.333 0.00 0.00 39.63 2.17
1906 1980 6.952773 ATGTGTTAGGAACTTTTAACAGCA 57.047 33.333 0.00 1.46 39.63 4.41
1907 1981 8.565416 ACTTATGTGTTAGGAACTTTTAACAGC 58.435 33.333 0.00 0.00 39.63 4.40
1908 1982 9.878599 CACTTATGTGTTAGGAACTTTTAACAG 57.121 33.333 0.62 0.00 39.63 3.16
1926 2000 3.671008 TGTCTACGCCAACACTTATGT 57.329 42.857 0.00 0.00 42.46 2.29
1927 2001 5.810587 ACTAATGTCTACGCCAACACTTATG 59.189 40.000 0.00 0.00 0.00 1.90
1928 2002 5.974108 ACTAATGTCTACGCCAACACTTAT 58.026 37.500 0.00 0.00 0.00 1.73
1929 2003 5.395682 ACTAATGTCTACGCCAACACTTA 57.604 39.130 0.00 0.00 0.00 2.24
1930 2004 4.267349 ACTAATGTCTACGCCAACACTT 57.733 40.909 0.00 0.00 0.00 3.16
1931 2005 3.955650 ACTAATGTCTACGCCAACACT 57.044 42.857 0.00 0.00 0.00 3.55
1932 2006 3.550678 GCTACTAATGTCTACGCCAACAC 59.449 47.826 0.00 0.00 0.00 3.32
1938 2012 2.308811 GAGCGCTACTAATGTCTACGC 58.691 52.381 11.50 0.00 40.07 4.42
1945 2019 2.586258 ACACTGGAGCGCTACTAATG 57.414 50.000 22.67 17.80 0.00 1.90
1954 2028 1.013596 TGAACAACAACACTGGAGCG 58.986 50.000 0.00 0.00 0.00 5.03
1967 2044 4.960938 ACTCTGTACTTGCTCATGAACAA 58.039 39.130 10.93 10.93 0.00 2.83
2039 2122 2.159572 CCGTGCCCAAGTTAAATTCGAG 60.160 50.000 0.00 0.00 0.00 4.04
2088 2171 4.219944 GCCATGTACTCCGATATTACTGGA 59.780 45.833 0.00 0.00 0.00 3.86
2089 2172 4.220821 AGCCATGTACTCCGATATTACTGG 59.779 45.833 0.00 0.00 0.00 4.00
2090 2173 5.048013 TCAGCCATGTACTCCGATATTACTG 60.048 44.000 0.00 0.00 0.00 2.74
2091 2174 5.077564 TCAGCCATGTACTCCGATATTACT 58.922 41.667 0.00 0.00 0.00 2.24
2092 2175 5.386958 TCAGCCATGTACTCCGATATTAC 57.613 43.478 0.00 0.00 0.00 1.89
2093 2176 6.014584 ACAATCAGCCATGTACTCCGATATTA 60.015 38.462 0.00 0.00 0.00 0.98
2094 2177 5.221722 ACAATCAGCCATGTACTCCGATATT 60.222 40.000 0.00 0.00 0.00 1.28
2095 2178 4.284490 ACAATCAGCCATGTACTCCGATAT 59.716 41.667 0.00 0.00 0.00 1.63
2096 2179 3.641436 ACAATCAGCCATGTACTCCGATA 59.359 43.478 0.00 0.00 0.00 2.92
2097 2180 2.435805 ACAATCAGCCATGTACTCCGAT 59.564 45.455 0.00 0.00 0.00 4.18
2098 2181 1.831106 ACAATCAGCCATGTACTCCGA 59.169 47.619 0.00 0.00 0.00 4.55
2099 2182 2.315925 ACAATCAGCCATGTACTCCG 57.684 50.000 0.00 0.00 0.00 4.63
2100 2183 4.516698 CCATTACAATCAGCCATGTACTCC 59.483 45.833 0.00 0.00 32.07 3.85
2101 2184 4.516698 CCCATTACAATCAGCCATGTACTC 59.483 45.833 0.00 0.00 32.07 2.59
2102 2185 4.464008 CCCATTACAATCAGCCATGTACT 58.536 43.478 0.00 0.00 32.07 2.73
2103 2186 3.569701 CCCCATTACAATCAGCCATGTAC 59.430 47.826 0.00 0.00 32.07 2.90
2104 2187 3.461458 TCCCCATTACAATCAGCCATGTA 59.539 43.478 0.00 0.00 0.00 2.29
2105 2188 2.244510 TCCCCATTACAATCAGCCATGT 59.755 45.455 0.00 0.00 0.00 3.21
2106 2189 2.889045 CTCCCCATTACAATCAGCCATG 59.111 50.000 0.00 0.00 0.00 3.66
2107 2190 2.515429 ACTCCCCATTACAATCAGCCAT 59.485 45.455 0.00 0.00 0.00 4.40
2108 2191 1.922447 ACTCCCCATTACAATCAGCCA 59.078 47.619 0.00 0.00 0.00 4.75
2109 2192 2.736670 ACTCCCCATTACAATCAGCC 57.263 50.000 0.00 0.00 0.00 4.85
2110 2193 4.973168 TGATACTCCCCATTACAATCAGC 58.027 43.478 0.00 0.00 0.00 4.26
2111 2194 9.823647 GTATATGATACTCCCCATTACAATCAG 57.176 37.037 0.00 0.00 0.00 2.90
2112 2195 9.560860 AGTATATGATACTCCCCATTACAATCA 57.439 33.333 0.00 0.00 0.00 2.57
2119 2202 9.702253 CACTACTAGTATATGATACTCCCCATT 57.298 37.037 2.33 0.00 0.00 3.16
2120 2203 8.847816 ACACTACTAGTATATGATACTCCCCAT 58.152 37.037 17.12 0.00 0.00 4.00
2121 2204 8.228353 ACACTACTAGTATATGATACTCCCCA 57.772 38.462 17.12 0.00 0.00 4.96
2135 2218 8.820831 GGGAGGTAGTATCATACACTACTAGTA 58.179 40.741 1.89 1.89 45.06 1.82
2136 2219 7.516906 AGGGAGGTAGTATCATACACTACTAGT 59.483 40.741 0.00 0.00 45.06 2.57
2137 2220 7.920227 AGGGAGGTAGTATCATACACTACTAG 58.080 42.308 11.28 0.00 45.06 2.57
2138 2221 7.885209 AGGGAGGTAGTATCATACACTACTA 57.115 40.000 11.28 0.00 45.06 1.82
2139 2222 6.783517 AGGGAGGTAGTATCATACACTACT 57.216 41.667 11.28 0.00 45.06 2.57
2140 2223 8.958506 CATTAGGGAGGTAGTATCATACACTAC 58.041 40.741 0.00 4.44 45.01 2.73
2141 2224 7.614583 GCATTAGGGAGGTAGTATCATACACTA 59.385 40.741 0.00 0.00 0.00 2.74
2142 2225 6.437793 GCATTAGGGAGGTAGTATCATACACT 59.562 42.308 0.00 0.00 0.00 3.55
2143 2226 6.210784 TGCATTAGGGAGGTAGTATCATACAC 59.789 42.308 0.00 0.00 0.00 2.90
2144 2227 6.319715 TGCATTAGGGAGGTAGTATCATACA 58.680 40.000 0.00 0.00 0.00 2.29
2145 2228 6.852420 TGCATTAGGGAGGTAGTATCATAC 57.148 41.667 0.00 0.00 0.00 2.39
2146 2229 9.729550 ATTATGCATTAGGGAGGTAGTATCATA 57.270 33.333 3.54 0.00 0.00 2.15
2147 2230 8.629821 ATTATGCATTAGGGAGGTAGTATCAT 57.370 34.615 3.54 0.00 0.00 2.45
2148 2231 9.729550 ATATTATGCATTAGGGAGGTAGTATCA 57.270 33.333 3.54 0.00 0.00 2.15
2151 2234 9.333961 ACAATATTATGCATTAGGGAGGTAGTA 57.666 33.333 3.54 0.00 0.00 1.82
2152 2235 8.219660 ACAATATTATGCATTAGGGAGGTAGT 57.780 34.615 3.54 0.00 0.00 2.73
2155 2238 8.835734 TGATACAATATTATGCATTAGGGAGGT 58.164 33.333 3.54 0.00 0.00 3.85
2156 2239 9.857656 ATGATACAATATTATGCATTAGGGAGG 57.142 33.333 3.54 0.00 0.00 4.30
2192 2275 9.529325 GCATGACAACAAATAGAGTACTACATA 57.471 33.333 0.00 0.00 0.00 2.29
2193 2276 8.040727 TGCATGACAACAAATAGAGTACTACAT 58.959 33.333 0.00 0.00 0.00 2.29
2194 2277 7.382898 TGCATGACAACAAATAGAGTACTACA 58.617 34.615 0.00 0.00 0.00 2.74
2195 2278 7.827819 TGCATGACAACAAATAGAGTACTAC 57.172 36.000 0.00 0.00 0.00 2.73
2196 2279 8.040727 ACATGCATGACAACAAATAGAGTACTA 58.959 33.333 32.75 0.00 0.00 1.82
2197 2280 6.881065 ACATGCATGACAACAAATAGAGTACT 59.119 34.615 32.75 0.00 0.00 2.73
2198 2281 7.076842 ACATGCATGACAACAAATAGAGTAC 57.923 36.000 32.75 0.00 0.00 2.73
2199 2282 6.878389 TGACATGCATGACAACAAATAGAGTA 59.122 34.615 32.75 3.41 30.07 2.59
2200 2283 5.706833 TGACATGCATGACAACAAATAGAGT 59.293 36.000 32.75 4.97 30.07 3.24
2201 2284 6.025896 GTGACATGCATGACAACAAATAGAG 58.974 40.000 32.75 1.29 34.54 2.43
2202 2285 5.472820 TGTGACATGCATGACAACAAATAGA 59.527 36.000 32.75 5.01 34.54 1.98
2203 2286 5.701855 TGTGACATGCATGACAACAAATAG 58.298 37.500 32.75 1.99 34.54 1.73
2204 2287 5.702349 TGTGACATGCATGACAACAAATA 57.298 34.783 32.75 12.14 34.54 1.40
2205 2288 4.587584 TGTGACATGCATGACAACAAAT 57.412 36.364 32.75 7.85 34.54 2.32
2206 2289 4.382345 TTGTGACATGCATGACAACAAA 57.618 36.364 32.75 21.79 34.54 2.83
2207 2290 4.142204 ACTTTGTGACATGCATGACAACAA 60.142 37.500 32.75 29.22 34.54 2.83
2208 2291 3.380954 ACTTTGTGACATGCATGACAACA 59.619 39.130 32.75 25.99 34.54 3.33
2209 2292 3.968649 ACTTTGTGACATGCATGACAAC 58.031 40.909 32.75 24.00 34.54 3.32
2210 2293 4.320421 GCTACTTTGTGACATGCATGACAA 60.320 41.667 32.75 27.16 34.54 3.18
2211 2294 3.189080 GCTACTTTGTGACATGCATGACA 59.811 43.478 32.75 28.48 0.00 3.58
2212 2295 3.189080 TGCTACTTTGTGACATGCATGAC 59.811 43.478 32.75 26.17 0.00 3.06
2213 2296 3.410508 TGCTACTTTGTGACATGCATGA 58.589 40.909 32.75 9.00 0.00 3.07
2214 2297 3.835378 TGCTACTTTGTGACATGCATG 57.165 42.857 25.09 25.09 0.00 4.06
2215 2298 5.415389 TGTTATGCTACTTTGTGACATGCAT 59.585 36.000 0.00 0.00 41.60 3.96
2216 2299 4.759183 TGTTATGCTACTTTGTGACATGCA 59.241 37.500 0.00 0.00 0.00 3.96
2217 2300 5.295431 TGTTATGCTACTTTGTGACATGC 57.705 39.130 0.00 0.00 0.00 4.06
2257 2340 5.908590 AGAGGGTGGAGTATCATATCATGA 58.091 41.667 0.00 0.00 44.55 3.07
2258 2341 6.617782 AAGAGGGTGGAGTATCATATCATG 57.382 41.667 0.00 0.00 36.25 3.07
2259 2342 7.639062 AAAAGAGGGTGGAGTATCATATCAT 57.361 36.000 0.00 0.00 36.25 2.45
2260 2343 7.348274 AGAAAAAGAGGGTGGAGTATCATATCA 59.652 37.037 0.00 0.00 36.25 2.15
2261 2344 7.740805 AGAAAAAGAGGGTGGAGTATCATATC 58.259 38.462 0.00 0.00 36.25 1.63
2262 2345 7.698163 AGAAAAAGAGGGTGGAGTATCATAT 57.302 36.000 0.00 0.00 36.25 1.78
2263 2346 7.182026 TGAAGAAAAAGAGGGTGGAGTATCATA 59.818 37.037 0.00 0.00 36.25 2.15
2264 2347 6.012508 TGAAGAAAAAGAGGGTGGAGTATCAT 60.013 38.462 0.00 0.00 36.25 2.45
2265 2348 5.309543 TGAAGAAAAAGAGGGTGGAGTATCA 59.690 40.000 0.00 0.00 36.25 2.15
2266 2349 5.805728 TGAAGAAAAAGAGGGTGGAGTATC 58.194 41.667 0.00 0.00 0.00 2.24
2267 2350 5.843019 TGAAGAAAAAGAGGGTGGAGTAT 57.157 39.130 0.00 0.00 0.00 2.12
2268 2351 5.843019 ATGAAGAAAAAGAGGGTGGAGTA 57.157 39.130 0.00 0.00 0.00 2.59
2269 2352 4.731313 ATGAAGAAAAAGAGGGTGGAGT 57.269 40.909 0.00 0.00 0.00 3.85
2270 2353 7.524717 TTAAATGAAGAAAAAGAGGGTGGAG 57.475 36.000 0.00 0.00 0.00 3.86
2271 2354 7.508977 ACATTAAATGAAGAAAAAGAGGGTGGA 59.491 33.333 0.00 0.00 0.00 4.02
2272 2355 7.670364 ACATTAAATGAAGAAAAAGAGGGTGG 58.330 34.615 0.00 0.00 0.00 4.61
2293 2376 8.928733 GCAATTTTGATGAAGTGTCATAACATT 58.071 29.630 0.00 0.00 44.83 2.71
2294 2377 8.089597 TGCAATTTTGATGAAGTGTCATAACAT 58.910 29.630 0.00 0.00 44.83 2.71
2295 2378 7.432059 TGCAATTTTGATGAAGTGTCATAACA 58.568 30.769 0.00 0.00 44.83 2.41
2296 2379 7.872163 TGCAATTTTGATGAAGTGTCATAAC 57.128 32.000 0.00 0.00 44.83 1.89
2297 2380 9.791820 CTATGCAATTTTGATGAAGTGTCATAA 57.208 29.630 0.00 0.00 44.83 1.90
2298 2381 8.959548 ACTATGCAATTTTGATGAAGTGTCATA 58.040 29.630 0.00 0.00 44.83 2.15
2300 2383 7.218228 ACTATGCAATTTTGATGAAGTGTCA 57.782 32.000 0.00 0.00 38.41 3.58
2301 2384 7.062605 CCAACTATGCAATTTTGATGAAGTGTC 59.937 37.037 0.00 0.00 0.00 3.67
2302 2385 6.869913 CCAACTATGCAATTTTGATGAAGTGT 59.130 34.615 0.00 0.00 0.00 3.55
2303 2386 6.183360 GCCAACTATGCAATTTTGATGAAGTG 60.183 38.462 0.00 0.00 0.00 3.16
2304 2387 5.870978 GCCAACTATGCAATTTTGATGAAGT 59.129 36.000 0.00 0.00 0.00 3.01
2305 2388 5.870433 TGCCAACTATGCAATTTTGATGAAG 59.130 36.000 0.00 0.00 35.40 3.02
2306 2389 5.791666 TGCCAACTATGCAATTTTGATGAA 58.208 33.333 0.00 0.00 35.40 2.57
2307 2390 5.402997 TGCCAACTATGCAATTTTGATGA 57.597 34.783 0.00 0.00 35.40 2.92
2308 2391 6.043327 CATGCCAACTATGCAATTTTGATG 57.957 37.500 0.00 0.00 42.92 3.07
2319 2402 5.163784 GCTAGTATCATGCATGCCAACTATG 60.164 44.000 22.25 18.43 0.00 2.23
2320 2403 4.940046 GCTAGTATCATGCATGCCAACTAT 59.060 41.667 22.25 11.30 0.00 2.12
2321 2404 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
2322 2405 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
2323 2406 3.058432 CAGCTAGTATCATGCATGCCAAC 60.058 47.826 22.25 17.59 0.00 3.77
2324 2407 3.143728 CAGCTAGTATCATGCATGCCAA 58.856 45.455 22.25 5.34 0.00 4.52
2325 2408 2.105306 ACAGCTAGTATCATGCATGCCA 59.895 45.455 22.25 8.84 0.00 4.92
2326 2409 2.483106 CACAGCTAGTATCATGCATGCC 59.517 50.000 22.25 11.72 0.00 4.40
2327 2410 3.396560 TCACAGCTAGTATCATGCATGC 58.603 45.455 22.25 11.82 0.00 4.06
2328 2411 6.396450 AGTATCACAGCTAGTATCATGCATG 58.604 40.000 21.07 21.07 0.00 4.06
2329 2412 6.602410 AGTATCACAGCTAGTATCATGCAT 57.398 37.500 0.00 0.00 0.00 3.96
2330 2413 6.071896 GGTAGTATCACAGCTAGTATCATGCA 60.072 42.308 0.00 0.00 0.00 3.96
2331 2414 6.071896 TGGTAGTATCACAGCTAGTATCATGC 60.072 42.308 0.00 0.00 0.00 4.06
2332 2415 7.454260 TGGTAGTATCACAGCTAGTATCATG 57.546 40.000 0.00 0.00 0.00 3.07
2333 2416 8.657387 AATGGTAGTATCACAGCTAGTATCAT 57.343 34.615 0.00 0.00 30.53 2.45
2334 2417 9.011095 GTAATGGTAGTATCACAGCTAGTATCA 57.989 37.037 0.00 0.00 0.00 2.15
2335 2418 8.176365 CGTAATGGTAGTATCACAGCTAGTATC 58.824 40.741 0.00 0.00 0.00 2.24
2336 2419 7.881751 TCGTAATGGTAGTATCACAGCTAGTAT 59.118 37.037 0.00 0.00 0.00 2.12
2337 2420 7.172190 GTCGTAATGGTAGTATCACAGCTAGTA 59.828 40.741 0.00 0.00 0.00 1.82
2338 2421 6.017275 GTCGTAATGGTAGTATCACAGCTAGT 60.017 42.308 0.00 0.00 0.00 2.57
2339 2422 6.372185 GTCGTAATGGTAGTATCACAGCTAG 58.628 44.000 0.00 0.00 0.00 3.42
2340 2423 5.240183 GGTCGTAATGGTAGTATCACAGCTA 59.760 44.000 0.00 0.00 0.00 3.32
2341 2424 4.037684 GGTCGTAATGGTAGTATCACAGCT 59.962 45.833 0.00 0.00 0.00 4.24
2342 2425 4.202080 TGGTCGTAATGGTAGTATCACAGC 60.202 45.833 0.00 0.00 0.00 4.40
2343 2426 5.509716 TGGTCGTAATGGTAGTATCACAG 57.490 43.478 0.00 0.00 0.00 3.66
2344 2427 4.202080 GCTGGTCGTAATGGTAGTATCACA 60.202 45.833 0.00 0.00 0.00 3.58
2345 2428 4.296690 GCTGGTCGTAATGGTAGTATCAC 58.703 47.826 0.00 0.00 0.00 3.06
2346 2429 3.319972 GGCTGGTCGTAATGGTAGTATCA 59.680 47.826 0.00 0.00 0.00 2.15
2347 2430 3.573110 AGGCTGGTCGTAATGGTAGTATC 59.427 47.826 0.00 0.00 0.00 2.24
2348 2431 3.573695 AGGCTGGTCGTAATGGTAGTAT 58.426 45.455 0.00 0.00 0.00 2.12
2349 2432 3.022557 AGGCTGGTCGTAATGGTAGTA 57.977 47.619 0.00 0.00 0.00 1.82
2350 2433 1.861982 AGGCTGGTCGTAATGGTAGT 58.138 50.000 0.00 0.00 0.00 2.73
2351 2434 2.981859 AAGGCTGGTCGTAATGGTAG 57.018 50.000 0.00 0.00 0.00 3.18
2352 2435 2.101917 GCTAAGGCTGGTCGTAATGGTA 59.898 50.000 0.00 0.00 35.22 3.25
2353 2436 1.134491 GCTAAGGCTGGTCGTAATGGT 60.134 52.381 0.00 0.00 35.22 3.55
2354 2437 1.583054 GCTAAGGCTGGTCGTAATGG 58.417 55.000 0.00 0.00 35.22 3.16
2355 2438 1.139058 AGGCTAAGGCTGGTCGTAATG 59.861 52.381 0.00 0.00 36.97 1.90
2356 2439 1.497161 AGGCTAAGGCTGGTCGTAAT 58.503 50.000 0.00 0.00 36.97 1.89
2357 2440 1.272807 AAGGCTAAGGCTGGTCGTAA 58.727 50.000 0.00 0.00 38.81 3.18
2358 2441 1.272807 AAAGGCTAAGGCTGGTCGTA 58.727 50.000 0.00 0.00 38.81 3.43
2359 2442 0.400594 AAAAGGCTAAGGCTGGTCGT 59.599 50.000 0.00 0.00 38.81 4.34
2360 2443 2.396590 TAAAAGGCTAAGGCTGGTCG 57.603 50.000 0.00 0.00 38.81 4.79
2361 2444 4.017126 ACAATAAAAGGCTAAGGCTGGTC 58.983 43.478 0.00 0.00 38.81 4.02
2362 2445 4.047627 ACAATAAAAGGCTAAGGCTGGT 57.952 40.909 0.00 0.00 38.81 4.00
2363 2446 5.885912 TCTTACAATAAAAGGCTAAGGCTGG 59.114 40.000 0.00 0.00 38.81 4.85
2364 2447 7.094377 TGTTCTTACAATAAAAGGCTAAGGCTG 60.094 37.037 0.00 0.00 38.81 4.85
2365 2448 6.946009 TGTTCTTACAATAAAAGGCTAAGGCT 59.054 34.615 0.00 0.00 41.24 4.58
2366 2449 7.094334 ACTGTTCTTACAATAAAAGGCTAAGGC 60.094 37.037 0.00 0.00 32.92 4.35
2367 2450 8.336801 ACTGTTCTTACAATAAAAGGCTAAGG 57.663 34.615 0.00 0.00 32.92 2.69
2375 2458 5.278561 CCGCCCAACTGTTCTTACAATAAAA 60.279 40.000 0.00 0.00 32.92 1.52
2496 2580 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
2502 2586 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
2517 2601 2.799126 AGCACGAAATACAATGGGGA 57.201 45.000 0.00 0.00 0.00 4.81
2520 2604 8.372521 GTCAAAATTTAGCACGAAATACAATGG 58.627 33.333 0.00 0.00 0.00 3.16
2521 2605 8.372521 GGTCAAAATTTAGCACGAAATACAATG 58.627 33.333 0.00 0.00 0.00 2.82
2524 2608 6.971602 TGGTCAAAATTTAGCACGAAATACA 58.028 32.000 0.00 0.00 0.00 2.29
2525 2609 9.221775 CTATGGTCAAAATTTAGCACGAAATAC 57.778 33.333 0.00 0.00 0.00 1.89
2526 2610 9.168451 TCTATGGTCAAAATTTAGCACGAAATA 57.832 29.630 0.00 0.00 0.00 1.40
2527 2611 8.050778 TCTATGGTCAAAATTTAGCACGAAAT 57.949 30.769 0.00 0.00 0.00 2.17
2548 2633 9.988350 CGTGAGCATTTTGTTAGTTTAATCTAT 57.012 29.630 0.00 0.00 0.00 1.98
2569 2654 0.943673 TGTTTGGTGACATGCGTGAG 59.056 50.000 14.17 0.00 42.32 3.51
2570 2655 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
2571 2656 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
2572 2657 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
2573 2658 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
2574 2659 9.149225 TGAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
2599 2684 9.619316 TTGGATTCGTATTTGAACATAGTTTTG 57.381 29.630 0.00 0.00 0.00 2.44
2602 2687 9.173021 TCATTGGATTCGTATTTGAACATAGTT 57.827 29.630 0.00 0.00 0.00 2.24
2603 2688 8.731275 TCATTGGATTCGTATTTGAACATAGT 57.269 30.769 0.00 0.00 0.00 2.12
2605 2690 8.956533 TCTCATTGGATTCGTATTTGAACATA 57.043 30.769 0.00 0.00 0.00 2.29
2606 2691 7.864108 TCTCATTGGATTCGTATTTGAACAT 57.136 32.000 0.00 0.00 0.00 2.71
2607 2692 7.864108 ATCTCATTGGATTCGTATTTGAACA 57.136 32.000 0.00 0.00 0.00 3.18
2616 2701 9.793252 CAAGAAAAATTATCTCATTGGATTCGT 57.207 29.630 0.00 0.00 0.00 3.85
2622 2707 8.814235 GCATGTCAAGAAAAATTATCTCATTGG 58.186 33.333 0.00 0.00 0.00 3.16
2666 2751 9.823647 TTGTGCCAAATTTTGACTAAAGATTTA 57.176 25.926 10.72 0.00 0.00 1.40
2667 2752 8.729805 TTGTGCCAAATTTTGACTAAAGATTT 57.270 26.923 10.72 0.00 0.00 2.17
2668 2753 8.611757 GTTTGTGCCAAATTTTGACTAAAGATT 58.388 29.630 10.72 0.00 0.00 2.40
2672 2757 8.035394 TGTAGTTTGTGCCAAATTTTGACTAAA 58.965 29.630 10.72 2.25 0.00 1.85
2673 2758 7.548097 TGTAGTTTGTGCCAAATTTTGACTAA 58.452 30.769 10.72 2.90 0.00 2.24
2682 2767 3.070878 CCCCTTTGTAGTTTGTGCCAAAT 59.929 43.478 4.07 0.00 0.00 2.32
2683 2768 2.432510 CCCCTTTGTAGTTTGTGCCAAA 59.567 45.455 0.00 0.00 0.00 3.28
2684 2769 2.035632 CCCCTTTGTAGTTTGTGCCAA 58.964 47.619 0.00 0.00 0.00 4.52
2685 2770 1.698506 CCCCTTTGTAGTTTGTGCCA 58.301 50.000 0.00 0.00 0.00 4.92
2687 2772 0.317160 GCCCCCTTTGTAGTTTGTGC 59.683 55.000 0.00 0.00 0.00 4.57
2689 2774 0.857675 AGGCCCCCTTTGTAGTTTGT 59.142 50.000 0.00 0.00 0.00 2.83
2690 2775 2.891191 TAGGCCCCCTTTGTAGTTTG 57.109 50.000 0.00 0.00 34.61 2.93
2694 2779 3.203487 TGGTTTATAGGCCCCCTTTGTAG 59.797 47.826 0.00 0.00 34.61 2.74
2695 2780 3.199671 TGGTTTATAGGCCCCCTTTGTA 58.800 45.455 0.00 0.00 34.61 2.41
2698 2783 1.573857 CCTGGTTTATAGGCCCCCTTT 59.426 52.381 0.00 0.00 34.61 3.11
2699 2784 1.231963 CCTGGTTTATAGGCCCCCTT 58.768 55.000 0.00 0.00 34.61 3.95
2701 2786 0.477204 GTCCTGGTTTATAGGCCCCC 59.523 60.000 0.00 0.00 35.23 5.40
2702 2787 0.108019 CGTCCTGGTTTATAGGCCCC 59.892 60.000 0.00 0.00 35.23 5.80
2703 2788 0.108019 CCGTCCTGGTTTATAGGCCC 59.892 60.000 0.00 0.00 35.23 5.80
2705 2790 1.070289 CCTCCGTCCTGGTTTATAGGC 59.930 57.143 0.00 0.00 39.52 3.93
2712 2798 1.357079 AGTACTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
2714 2800 2.140839 AAGTACTACCTCCGTCCTGG 57.859 55.000 0.00 0.00 40.09 4.45
2715 2801 3.257624 ACAAAAGTACTACCTCCGTCCTG 59.742 47.826 0.00 0.00 0.00 3.86
2716 2802 3.504375 ACAAAAGTACTACCTCCGTCCT 58.496 45.455 0.00 0.00 0.00 3.85
2720 2806 6.375455 TCCTACTTACAAAAGTACTACCTCCG 59.625 42.308 0.00 0.00 44.26 4.63
2726 2812 9.236006 CTGGTACTCCTACTTACAAAAGTACTA 57.764 37.037 0.00 4.07 45.34 1.82
2731 2817 5.869888 CAGCTGGTACTCCTACTTACAAAAG 59.130 44.000 5.57 0.00 35.25 2.27
2732 2818 5.790593 CAGCTGGTACTCCTACTTACAAAA 58.209 41.667 5.57 0.00 34.23 2.44
2733 2819 4.322499 GCAGCTGGTACTCCTACTTACAAA 60.322 45.833 17.12 0.00 34.23 2.83
2735 2821 2.758979 GCAGCTGGTACTCCTACTTACA 59.241 50.000 17.12 0.00 34.23 2.41
2736 2822 2.758979 TGCAGCTGGTACTCCTACTTAC 59.241 50.000 17.12 0.00 34.23 2.34
2738 2824 1.938585 TGCAGCTGGTACTCCTACTT 58.061 50.000 17.12 0.00 34.23 2.24
2739 2825 1.759445 CATGCAGCTGGTACTCCTACT 59.241 52.381 17.12 0.00 34.23 2.57
2740 2826 1.808133 GCATGCAGCTGGTACTCCTAC 60.808 57.143 17.12 0.00 41.15 3.18
2741 2827 0.465705 GCATGCAGCTGGTACTCCTA 59.534 55.000 17.12 0.00 41.15 2.94
2742 2828 1.222936 GCATGCAGCTGGTACTCCT 59.777 57.895 17.12 0.00 41.15 3.69
2743 2829 1.078214 TGCATGCAGCTGGTACTCC 60.078 57.895 18.46 0.00 45.94 3.85
2744 2830 1.699656 CGTGCATGCAGCTGGTACTC 61.700 60.000 23.41 4.73 45.94 2.59
2772 2858 7.277319 GCACATCTTGGTAGGTAAAGTAGTAAC 59.723 40.741 0.00 0.00 0.00 2.50
2773 2859 7.038870 TGCACATCTTGGTAGGTAAAGTAGTAA 60.039 37.037 0.00 0.00 0.00 2.24
2775 2861 5.247564 TGCACATCTTGGTAGGTAAAGTAGT 59.752 40.000 0.00 0.00 0.00 2.73
2776 2862 5.581085 GTGCACATCTTGGTAGGTAAAGTAG 59.419 44.000 13.17 0.00 0.00 2.57
2777 2863 5.247564 AGTGCACATCTTGGTAGGTAAAGTA 59.752 40.000 21.04 0.00 0.00 2.24
2778 2864 4.041691 AGTGCACATCTTGGTAGGTAAAGT 59.958 41.667 21.04 0.00 0.00 2.66
2779 2865 4.579869 AGTGCACATCTTGGTAGGTAAAG 58.420 43.478 21.04 0.00 0.00 1.85
2804 2892 4.699735 ACATTCGGCACATAAGTTTGATCA 59.300 37.500 0.00 0.00 0.00 2.92
2842 2930 5.123502 AGCAATCATGTCTTGAGTTCATGAC 59.876 40.000 16.80 16.80 46.49 3.06
2857 2945 6.252869 GCAATGTAAAGTTCAGAGCAATCATG 59.747 38.462 0.00 0.00 0.00 3.07
2866 2954 6.257423 CGCATATTGCAATGTAAAGTTCAGA 58.743 36.000 22.27 0.00 45.36 3.27
2875 2963 1.979855 AGGGCGCATATTGCAATGTA 58.020 45.000 22.27 2.95 45.36 2.29
2879 2967 1.024271 GAGAAGGGCGCATATTGCAA 58.976 50.000 10.83 0.00 45.36 4.08
2883 2971 2.292267 CAAGTGAGAAGGGCGCATATT 58.708 47.619 10.83 0.00 0.00 1.28
2884 2972 1.210478 ACAAGTGAGAAGGGCGCATAT 59.790 47.619 10.83 0.00 0.00 1.78
2903 2991 9.533253 TGGTAACTTCAGTGTTTACTTAGTAAC 57.467 33.333 4.09 1.73 32.08 2.50
2911 2999 6.688637 ACCTTTGGTAACTTCAGTGTTTAC 57.311 37.500 0.00 0.00 32.11 2.01
2953 3157 9.539825 GTTGAATCAGATATTCTACACATCAGT 57.460 33.333 7.22 0.00 35.13 3.41
2977 3184 1.064389 GGCCAATCCTTCCAGCTAGTT 60.064 52.381 0.00 0.00 0.00 2.24
2978 3185 0.548510 GGCCAATCCTTCCAGCTAGT 59.451 55.000 0.00 0.00 0.00 2.57
3033 3250 0.681733 GAGCAGTTCACTGACAGGGA 59.318 55.000 11.29 2.37 46.59 4.20
3036 3253 1.269257 TGTCGAGCAGTTCACTGACAG 60.269 52.381 11.29 0.00 46.59 3.51
3040 3257 1.858091 AAGTGTCGAGCAGTTCACTG 58.142 50.000 5.03 2.31 46.40 3.66
3045 3262 0.672342 ACCGTAAGTGTCGAGCAGTT 59.328 50.000 11.19 11.19 42.83 3.16
3046 3263 0.039437 CACCGTAAGTGTCGAGCAGT 60.039 55.000 0.00 0.00 41.93 4.40
3047 3264 0.732880 CCACCGTAAGTGTCGAGCAG 60.733 60.000 0.00 0.00 45.74 4.24
3048 3265 1.174078 TCCACCGTAAGTGTCGAGCA 61.174 55.000 0.00 0.00 45.74 4.26
3049 3266 0.172803 ATCCACCGTAAGTGTCGAGC 59.827 55.000 0.00 0.00 45.74 5.03
3050 3267 2.649331 AATCCACCGTAAGTGTCGAG 57.351 50.000 0.00 0.00 45.74 4.04
3051 3268 3.006110 AGAAAATCCACCGTAAGTGTCGA 59.994 43.478 0.00 0.00 45.74 4.20
3052 3269 3.122948 CAGAAAATCCACCGTAAGTGTCG 59.877 47.826 0.00 0.00 45.74 4.35
3053 3270 4.062991 ACAGAAAATCCACCGTAAGTGTC 58.937 43.478 0.00 0.00 45.74 3.67
3054 3271 4.081322 ACAGAAAATCCACCGTAAGTGT 57.919 40.909 0.00 0.00 45.74 3.55
3055 3272 5.008217 TGAAACAGAAAATCCACCGTAAGTG 59.992 40.000 0.00 0.00 46.83 3.16
3056 3273 5.127491 TGAAACAGAAAATCCACCGTAAGT 58.873 37.500 0.00 0.00 0.00 2.24
3059 3276 4.963373 TCTGAAACAGAAAATCCACCGTA 58.037 39.130 0.00 0.00 37.57 4.02
3061 3278 4.455533 TGATCTGAAACAGAAAATCCACCG 59.544 41.667 5.57 0.00 44.04 4.94
3074 3293 2.606725 CCTGCTCGTCATGATCTGAAAC 59.393 50.000 0.00 0.00 35.07 2.78
3172 3391 6.966632 TCGTCAGAAGAATCAACAAGTTTTTG 59.033 34.615 0.00 0.00 40.24 2.44
3177 3396 4.209288 CGTTCGTCAGAAGAATCAACAAGT 59.791 41.667 1.85 0.00 36.99 3.16
3219 3438 0.176680 CCATCAGAGGGGTTCGTCAG 59.823 60.000 0.00 0.00 0.00 3.51
3220 3439 1.899437 GCCATCAGAGGGGTTCGTCA 61.899 60.000 2.61 0.00 0.00 4.35
3221 3440 1.153349 GCCATCAGAGGGGTTCGTC 60.153 63.158 2.61 0.00 0.00 4.20
3223 3442 0.107017 ATTGCCATCAGAGGGGTTCG 60.107 55.000 2.61 0.00 0.00 3.95
3225 3444 0.032813 CCATTGCCATCAGAGGGGTT 60.033 55.000 2.61 0.00 0.00 4.11
3287 3506 1.836391 CGCATATCCCCTGGTCCAA 59.164 57.895 0.00 0.00 0.00 3.53
3415 3634 2.043953 TGCTCGAGCTGCCTCCTA 60.044 61.111 35.27 12.31 42.66 2.94
3557 3778 2.626840 CCAGAGCCAAGAAAGTAGAGC 58.373 52.381 0.00 0.00 0.00 4.09
3559 3780 2.260822 AGCCAGAGCCAAGAAAGTAGA 58.739 47.619 0.00 0.00 41.25 2.59
3572 3795 1.069636 GTCAGAAAACGCAAGCCAGAG 60.070 52.381 0.00 0.00 45.62 3.35
3910 4133 4.056125 CTCGTCTGCGTCAGGCCA 62.056 66.667 5.01 0.00 42.61 5.36
3913 4136 2.091112 CAAGCTCGTCTGCGTCAGG 61.091 63.158 6.95 0.00 39.49 3.86
3977 4200 6.238103 CGTTAAACGATGGAGATTATGTTGCT 60.238 38.462 0.00 0.00 46.05 3.91
3998 4222 1.881324 TGTCACACCATCTCGTCGTTA 59.119 47.619 0.00 0.00 0.00 3.18
4000 4224 0.888619 ATGTCACACCATCTCGTCGT 59.111 50.000 0.00 0.00 0.00 4.34
4033 4282 0.546122 TCGATTTCCCCACATCCTGG 59.454 55.000 0.00 0.00 40.26 4.45
4123 4372 1.226435 GCTCAGCTCGTCCACGTAG 60.226 63.158 0.00 0.00 40.80 3.51
4171 4420 4.680237 TTGCCGTCCTCTGCCACG 62.680 66.667 0.00 0.00 35.72 4.94
4180 4429 3.093278 CAAGCGATCTTGCCGTCC 58.907 61.111 0.00 0.00 42.66 4.79
4300 4549 2.202932 CCGATCTTGGACGGGCTG 60.203 66.667 0.00 0.00 44.59 4.85
4361 4610 4.069232 CAGCGCGGACCTCTTGGA 62.069 66.667 8.83 0.00 37.04 3.53
4405 4654 1.077429 GGTGACCAGCATCCCCTTC 60.077 63.158 0.00 0.00 0.00 3.46
4470 4719 3.822192 TGGCCGACGGATCACTCG 61.822 66.667 20.50 0.00 0.00 4.18
4492 4741 1.667212 CACATGGACATGGACACATCG 59.333 52.381 15.94 0.00 42.91 3.84
4494 4743 1.272037 TGCACATGGACATGGACACAT 60.272 47.619 15.94 0.00 42.91 3.21
4498 4747 2.923121 AGTATGCACATGGACATGGAC 58.077 47.619 15.94 8.22 42.91 4.02
4616 4865 5.453198 CCTTACTTCCAAGTGCCAAAACATT 60.453 40.000 2.01 0.00 40.07 2.71
4636 4885 5.762179 AGATCACCATTCTGACAACCTTA 57.238 39.130 0.00 0.00 0.00 2.69
4658 4907 9.478768 TCGTAAAGTCAGTGAATTGTATAACAA 57.521 29.630 6.59 0.00 42.95 2.83
4667 4916 6.710744 AGTTTGGATCGTAAAGTCAGTGAATT 59.289 34.615 0.00 0.00 0.00 2.17
4672 4921 5.930569 GGTTAGTTTGGATCGTAAAGTCAGT 59.069 40.000 5.09 0.00 0.00 3.41
4673 4922 6.164176 AGGTTAGTTTGGATCGTAAAGTCAG 58.836 40.000 5.09 0.00 0.00 3.51
4683 4932 9.841880 GTAGAATCAAAAAGGTTAGTTTGGATC 57.158 33.333 0.00 0.00 35.79 3.36
4774 5023 9.895138 TGAATCAGATCAGAGTTTTGATGATAA 57.105 29.630 0.00 0.00 37.90 1.75
4777 5026 8.625786 TTTGAATCAGATCAGAGTTTTGATGA 57.374 30.769 0.00 0.00 37.90 2.92
4788 5037 8.221965 TGAATCCTGATTTTGAATCAGATCAG 57.778 34.615 24.78 21.59 46.25 2.90
4789 5038 8.050930 TCTGAATCCTGATTTTGAATCAGATCA 58.949 33.333 24.78 21.96 46.25 2.92
4792 5041 7.170277 TGTCTGAATCCTGATTTTGAATCAGA 58.830 34.615 24.78 14.73 46.25 3.27
4806 5055 4.015084 CCAAGCAAGATTGTCTGAATCCT 58.985 43.478 0.00 0.00 0.00 3.24
4807 5056 4.012374 TCCAAGCAAGATTGTCTGAATCC 58.988 43.478 0.00 0.00 0.00 3.01
4813 5062 2.555757 GCACTTCCAAGCAAGATTGTCT 59.444 45.455 0.00 0.00 0.00 3.41
4837 5086 0.174845 CCTCCCAAACGTCTATGCGA 59.825 55.000 0.00 0.00 35.59 5.10
4841 5090 2.823959 TGGTACCTCCCAAACGTCTAT 58.176 47.619 14.36 0.00 34.77 1.98
4850 5099 1.687840 CCCGACATGGTACCTCCCA 60.688 63.158 14.36 0.00 39.27 4.37
4861 5110 1.153568 CATCACGCACTCCCGACAT 60.154 57.895 0.00 0.00 0.00 3.06
4901 5150 2.684334 GCGTCCCCAAATATGGTGGTTA 60.684 50.000 5.25 0.00 46.01 2.85
4980 5241 2.422832 ACCGTTTTCCGCAAACTGTTAA 59.577 40.909 0.00 0.00 39.13 2.01
5108 5370 1.271163 CCGGTAGGGTTTTCTCTTGCA 60.271 52.381 0.00 0.00 0.00 4.08
5286 5549 0.526211 GAAAGATTTGTCCCCGCCAC 59.474 55.000 0.00 0.00 0.00 5.01
5385 5651 2.765108 CATCTCGATGTCGTAGCTGT 57.235 50.000 0.00 0.00 40.80 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.