Multiple sequence alignment - TraesCS1A01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G280800 chr1A 100.000 2181 0 0 1 2181 478534821 478537001 0.000000e+00 4028.0
1 TraesCS1A01G280800 chr1A 100.000 1524 0 0 2499 4022 478537319 478538842 0.000000e+00 2815.0
2 TraesCS1A01G280800 chr1D 96.471 1530 39 7 2500 4022 377950437 377951958 0.000000e+00 2512.0
3 TraesCS1A01G280800 chr1D 91.528 1558 77 21 649 2181 377948861 377950388 0.000000e+00 2095.0
4 TraesCS1A01G280800 chr1D 92.437 357 26 1 1 357 377948138 377948493 3.590000e-140 508.0
5 TraesCS1A01G280800 chr1D 84.899 298 42 3 351 647 377948518 377948813 8.450000e-77 298.0
6 TraesCS1A01G280800 chr1B 95.570 1535 49 9 2499 4022 505610938 505612464 0.000000e+00 2440.0
7 TraesCS1A01G280800 chr1B 94.441 1547 57 15 649 2181 505609359 505610890 0.000000e+00 2353.0
8 TraesCS1A01G280800 chr1B 91.815 281 22 1 3 282 505600750 505601030 1.360000e-104 390.0
9 TraesCS1A01G280800 chr1B 87.541 305 30 5 348 650 505609007 505609305 2.980000e-91 346.0
10 TraesCS1A01G280800 chr1B 86.555 119 14 2 124 240 342978578 342978696 3.260000e-26 130.0
11 TraesCS1A01G280800 chr3B 89.659 851 67 13 2539 3375 54286122 54286965 0.000000e+00 1064.0
12 TraesCS1A01G280800 chr3B 88.780 508 42 6 2884 3378 600749357 600748852 3.440000e-170 608.0
13 TraesCS1A01G280800 chr3B 87.598 508 48 6 2884 3378 600667813 600667308 3.490000e-160 575.0
14 TraesCS1A01G280800 chr3B 87.598 508 48 6 2884 3378 600702506 600702001 3.490000e-160 575.0
15 TraesCS1A01G280800 chr3B 95.152 165 7 1 2539 2703 600813348 600813185 3.990000e-65 259.0
16 TraesCS1A01G280800 chr3B 94.545 165 8 1 2539 2703 600726728 600726565 1.860000e-63 254.0
17 TraesCS1A01G280800 chr3B 92.500 160 11 1 2544 2703 600688487 600688329 1.120000e-55 228.0
18 TraesCS1A01G280800 chr3B 85.897 156 19 3 2698 2852 600667966 600667813 3.220000e-36 163.0
19 TraesCS1A01G280800 chr3B 90.351 114 10 1 2739 2852 600749469 600749357 9.010000e-32 148.0
20 TraesCS1A01G280800 chr3B 83.974 156 21 4 2698 2852 600715640 600715488 3.240000e-31 147.0
21 TraesCS1A01G280800 chr2A 88.304 855 77 11 2539 3379 226114381 226115226 0.000000e+00 1003.0
22 TraesCS1A01G280800 chr7B 87.822 854 83 13 2539 3378 81304534 81303688 0.000000e+00 981.0
23 TraesCS1A01G280800 chr3D 87.857 560 52 10 2828 3374 224776874 224777430 0.000000e+00 643.0
24 TraesCS1A01G280800 chr2B 85.985 264 36 1 63 325 493641532 493641795 8.510000e-72 281.0
25 TraesCS1A01G280800 chr5D 82.119 302 50 4 4 304 3503583 3503881 5.160000e-64 255.0
26 TraesCS1A01G280800 chr5D 100.000 34 0 0 524 557 485938460 485938427 3.360000e-06 63.9
27 TraesCS1A01G280800 chr5B 79.016 305 61 3 1 304 4872835 4872533 5.270000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G280800 chr1A 478534821 478538842 4021 False 3421.50 4028 100.000000 1 4022 2 chr1A.!!$F1 4021
1 TraesCS1A01G280800 chr1D 377948138 377951958 3820 False 1353.25 2512 91.333750 1 4022 4 chr1D.!!$F1 4021
2 TraesCS1A01G280800 chr1B 505609007 505612464 3457 False 1713.00 2440 92.517333 348 4022 3 chr1B.!!$F3 3674
3 TraesCS1A01G280800 chr3B 54286122 54286965 843 False 1064.00 1064 89.659000 2539 3375 1 chr3B.!!$F1 836
4 TraesCS1A01G280800 chr3B 600702001 600702506 505 True 575.00 575 87.598000 2884 3378 1 chr3B.!!$R2 494
5 TraesCS1A01G280800 chr3B 600748852 600749469 617 True 378.00 608 89.565500 2739 3378 2 chr3B.!!$R7 639
6 TraesCS1A01G280800 chr3B 600667308 600667966 658 True 369.00 575 86.747500 2698 3378 2 chr3B.!!$R6 680
7 TraesCS1A01G280800 chr2A 226114381 226115226 845 False 1003.00 1003 88.304000 2539 3379 1 chr2A.!!$F1 840
8 TraesCS1A01G280800 chr7B 81303688 81304534 846 True 981.00 981 87.822000 2539 3378 1 chr7B.!!$R1 839
9 TraesCS1A01G280800 chr3D 224776874 224777430 556 False 643.00 643 87.857000 2828 3374 1 chr3D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.103026 GAAGCAATGCCCCGGAAATC 59.897 55.0 0.73 0.0 0.00 2.17 F
735 821 0.316689 GACCAAACAAACCACGCTCG 60.317 55.0 0.00 0.0 0.00 5.03 F
1196 1286 0.394216 GGCCCAATTTTGCCCAATCC 60.394 55.0 3.97 0.0 41.97 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1241 1.346395 ACAGACGCATCAAGGTAACCA 59.654 47.619 0.0 0.0 37.17 3.67 R
2729 2858 3.056393 AGTCCGGTAATCGTGTTCATCAA 60.056 43.478 0.0 0.0 37.11 2.57 R
3115 3259 2.857186 TGTCTAAGACATGCTGCCAA 57.143 45.000 0.0 0.0 37.67 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.975363 GCAATGACCACTCGCTCTGC 61.975 60.000 0.00 0.00 0.00 4.26
36 37 2.813042 GACCACTCGCTCTGCTGC 60.813 66.667 0.00 0.00 0.00 5.25
67 68 0.103026 GAAGCAATGCCCCGGAAATC 59.897 55.000 0.73 0.00 0.00 2.17
89 90 4.473520 CCCTGAACATCGGCCGCT 62.474 66.667 23.51 8.48 0.00 5.52
139 140 0.321564 TGGCAACCACAATCTCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
151 152 1.444553 CTCCTCGTCGCCTGACAAC 60.445 63.158 0.00 0.00 45.80 3.32
157 158 1.006825 CGTCGCCTGACAACGAATCA 61.007 55.000 2.10 0.00 45.80 2.57
196 197 8.275015 TGAAGTTGTTGAAAAAGTACTCATCA 57.725 30.769 0.00 0.00 0.00 3.07
204 205 8.784043 GTTGAAAAAGTACTCATCACCACTATT 58.216 33.333 0.00 0.00 0.00 1.73
208 209 9.520515 AAAAAGTACTCATCACCACTATTCATT 57.479 29.630 0.00 0.00 0.00 2.57
217 218 4.941263 TCACCACTATTCATTTGTACCTGC 59.059 41.667 0.00 0.00 0.00 4.85
219 220 4.188462 CCACTATTCATTTGTACCTGCGA 58.812 43.478 0.00 0.00 0.00 5.10
221 222 3.871594 ACTATTCATTTGTACCTGCGAGC 59.128 43.478 0.00 0.00 0.00 5.03
229 230 1.443194 TACCTGCGAGCGAAACGTC 60.443 57.895 0.00 0.00 0.00 4.34
240 241 3.432759 GAAACGTCGAACACCTTGC 57.567 52.632 0.00 0.00 0.00 4.01
241 242 0.382636 GAAACGTCGAACACCTTGCG 60.383 55.000 0.00 0.00 0.00 4.85
258 259 2.430367 GGGCACGGTGGAAGAAGT 59.570 61.111 10.60 0.00 0.00 3.01
304 305 3.060615 CAGACCAAGCAGCAGGCC 61.061 66.667 0.00 0.00 46.50 5.19
306 307 1.920325 AGACCAAGCAGCAGGCCTA 60.920 57.895 3.98 0.00 46.50 3.93
455 488 1.594833 CCTGGGCAGCGTACAACTA 59.405 57.895 0.00 0.00 0.00 2.24
466 499 1.068055 CGTACAACTAGCCGGAACTGT 60.068 52.381 5.05 2.75 0.00 3.55
518 551 5.304686 AGTGTTGGTTGTTGATAGGAGAA 57.695 39.130 0.00 0.00 0.00 2.87
520 553 5.071788 AGTGTTGGTTGTTGATAGGAGAAGA 59.928 40.000 0.00 0.00 0.00 2.87
528 561 5.280499 TGTTGATAGGAGAAGAGGGAATGA 58.720 41.667 0.00 0.00 0.00 2.57
541 574 1.212935 GGGAATGACCTATGTGCCACT 59.787 52.381 0.00 0.00 38.98 4.00
620 653 7.330700 TGCAAATCCGTTCCAAATTTAAATCTC 59.669 33.333 0.10 0.00 0.00 2.75
628 661 7.816995 CGTTCCAAATTTAAATCTCAAATGGGA 59.183 33.333 0.10 0.00 32.29 4.37
637 670 3.418913 CAAATGGGACGCACGCGA 61.419 61.111 19.66 0.00 42.83 5.87
639 672 2.255172 AAATGGGACGCACGCGAAA 61.255 52.632 19.66 0.56 42.83 3.46
640 673 2.182614 AAATGGGACGCACGCGAAAG 62.183 55.000 19.66 5.40 42.83 2.62
735 821 0.316689 GACCAAACAAACCACGCTCG 60.317 55.000 0.00 0.00 0.00 5.03
736 822 1.657181 CCAAACAAACCACGCTCGC 60.657 57.895 0.00 0.00 0.00 5.03
737 823 2.003443 CAAACAAACCACGCTCGCG 61.003 57.895 10.06 10.06 46.03 5.87
738 824 3.175976 AAACAAACCACGCTCGCGG 62.176 57.895 16.18 3.10 44.69 6.46
1126 1216 4.767255 CAGTCCCTGGTCGCTGGC 62.767 72.222 0.00 0.00 0.00 4.85
1128 1218 4.021925 GTCCCTGGTCGCTGGCTT 62.022 66.667 0.00 0.00 0.00 4.35
1129 1219 3.249189 TCCCTGGTCGCTGGCTTT 61.249 61.111 0.00 0.00 0.00 3.51
1137 1227 1.745115 TCGCTGGCTTTGAATCCGG 60.745 57.895 0.00 0.00 0.00 5.14
1156 1246 2.992689 TCCGCGGTGCTCTGGTTA 60.993 61.111 27.15 0.00 0.00 2.85
1160 1250 1.003718 GCGGTGCTCTGGTTACCTT 60.004 57.895 2.07 0.00 32.28 3.50
1196 1286 0.394216 GGCCCAATTTTGCCCAATCC 60.394 55.000 3.97 0.00 41.97 3.01
1475 1580 2.851263 AGTTATTGGTCCGTCTTGCA 57.149 45.000 0.00 0.00 0.00 4.08
1581 1709 5.263968 ACTGTAAGGTTCATGATACCGAG 57.736 43.478 16.46 13.87 40.69 4.63
1637 1765 8.951787 ACTTGCGTGGATAATAAATTGTACTA 57.048 30.769 0.00 0.00 0.00 1.82
1638 1766 8.823818 ACTTGCGTGGATAATAAATTGTACTAC 58.176 33.333 0.00 0.00 0.00 2.73
1639 1767 7.718272 TGCGTGGATAATAAATTGTACTACC 57.282 36.000 0.00 0.00 0.00 3.18
1640 1768 7.273712 TGCGTGGATAATAAATTGTACTACCA 58.726 34.615 0.00 0.00 0.00 3.25
1659 1787 3.650942 ACCACCTTGACATCTTTAGGACA 59.349 43.478 0.00 0.00 0.00 4.02
1779 1907 5.320549 TGATCCCTAACTCGTTGTCTTAC 57.679 43.478 0.00 0.00 0.00 2.34
1793 1921 4.002906 TGTCTTACGGAATTTGCAGAGT 57.997 40.909 0.00 0.00 0.00 3.24
1914 2042 1.254954 ACCTCGACCTGTGAGTAACC 58.745 55.000 0.00 0.00 0.00 2.85
1948 2076 7.669427 TCACCATTTCATCAGCAAAATAAACT 58.331 30.769 0.00 0.00 0.00 2.66
1964 2092 8.702438 CAAAATAAACTAACTGCATTGAACCAG 58.298 33.333 0.00 0.00 35.26 4.00
2014 2142 9.507329 ACATCAAAGTGTACAGACTATTCAAAT 57.493 29.630 0.00 0.00 0.00 2.32
2525 2653 7.333423 GGTGTACACTAGCTGAAATCATTGTAA 59.667 37.037 24.55 0.00 0.00 2.41
2729 2858 7.158021 TGTTTCCTGTTTCATTCACTTTTTGT 58.842 30.769 0.00 0.00 0.00 2.83
2750 2880 2.883574 TGATGAACACGATTACCGGAC 58.116 47.619 9.46 0.00 43.93 4.79
2951 3082 4.699637 TGTTACACTGTACTTTCCCACTG 58.300 43.478 0.00 0.00 0.00 3.66
3036 3174 7.044496 TCTGGAGTAGGGATCACATATGATA 57.956 40.000 10.38 0.00 46.01 2.15
3040 3178 9.426534 TGGAGTAGGGATCACATATGATATAAG 57.573 37.037 10.38 0.00 46.01 1.73
3072 3211 3.640967 GCTCCTCAGTCCTCACTATGATT 59.359 47.826 0.00 0.00 0.00 2.57
3078 3222 6.983307 CCTCAGTCCTCACTATGATTTGTTAG 59.017 42.308 0.00 0.00 0.00 2.34
3115 3259 2.778299 ACGCAATACATTGACCAGTGT 58.222 42.857 6.13 3.73 40.14 3.55
3232 3380 3.818210 TGTGTCGTGCATTTTGACCTTAT 59.182 39.130 0.00 0.00 0.00 1.73
3811 3960 3.890756 ACATCTTTGTGCATCAACCTTCA 59.109 39.130 0.00 0.00 35.61 3.02
3953 4103 2.816087 GGATGAGTGCAGTGTCATGTTT 59.184 45.455 10.18 0.00 33.43 2.83
3967 4117 5.807011 GTGTCATGTTTTTCCTGGCATAATC 59.193 40.000 0.00 0.00 30.00 1.75
3971 4121 4.424842 TGTTTTTCCTGGCATAATCCCTT 58.575 39.130 0.00 0.00 0.00 3.95
3988 4138 2.288152 CCCTTGTTACACATGTTGGTGC 60.288 50.000 0.00 0.00 42.55 5.01
4000 4150 4.202111 ACATGTTGGTGCTTTAGTGTTTCC 60.202 41.667 0.00 0.00 0.00 3.13
4002 4152 2.335316 TGGTGCTTTAGTGTTTCCGT 57.665 45.000 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.026822 AGTGGTCATTGCCTACTCTTGG 60.027 50.000 0.00 0.00 0.00 3.61
36 37 0.096976 ATTGCTTCGGCGTTGAATCG 59.903 50.000 6.85 0.00 45.37 3.34
62 63 1.943340 GATGTTCAGGGGCTCGATTTC 59.057 52.381 0.00 0.00 0.00 2.17
67 68 2.202932 CCGATGTTCAGGGGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
89 90 3.431673 TCATGACCACATTGCTAACCA 57.568 42.857 0.00 0.00 34.15 3.67
121 122 0.321653 ACGAGGAGATTGTGGTTGCC 60.322 55.000 0.00 0.00 0.00 4.52
139 140 1.324736 GATGATTCGTTGTCAGGCGAC 59.675 52.381 1.79 3.11 42.93 5.19
196 197 3.938963 CGCAGGTACAAATGAATAGTGGT 59.061 43.478 0.00 0.00 0.00 4.16
204 205 0.245266 TCGCTCGCAGGTACAAATGA 59.755 50.000 0.00 0.00 0.00 2.57
208 209 1.279527 CGTTTCGCTCGCAGGTACAA 61.280 55.000 0.00 0.00 0.00 2.41
217 218 1.125266 GTGTTCGACGTTTCGCTCG 59.875 57.895 0.00 0.00 45.46 5.03
219 220 0.529119 AAGGTGTTCGACGTTTCGCT 60.529 50.000 0.00 0.00 45.46 4.93
240 241 2.742372 CTTCTTCCACCGTGCCCG 60.742 66.667 0.00 0.00 0.00 6.13
241 242 1.671379 GACTTCTTCCACCGTGCCC 60.671 63.158 0.00 0.00 0.00 5.36
304 305 0.034059 GGTCACCTCCATGCCGATAG 59.966 60.000 0.00 0.00 0.00 2.08
306 307 2.911143 GGTCACCTCCATGCCGAT 59.089 61.111 0.00 0.00 0.00 4.18
347 348 0.605589 GGACTGTTTTCACCCCCTCG 60.606 60.000 0.00 0.00 0.00 4.63
455 488 3.865929 CTGTCGCACAGTTCCGGCT 62.866 63.158 0.00 0.00 41.19 5.52
518 551 1.771255 GGCACATAGGTCATTCCCTCT 59.229 52.381 0.00 0.00 35.97 3.69
520 553 1.212935 GTGGCACATAGGTCATTCCCT 59.787 52.381 13.86 0.00 44.52 4.20
528 561 2.425143 CCAATCAGTGGCACATAGGT 57.575 50.000 21.41 2.27 44.52 3.08
548 581 2.451493 TTGTCCTTCCCTGGCCCA 60.451 61.111 0.00 0.00 0.00 5.36
589 622 2.036958 TGGAACGGATTTGCATCGAT 57.963 45.000 0.00 0.00 29.00 3.59
600 633 7.816995 CCATTTGAGATTTAAATTTGGAACGGA 59.183 33.333 1.43 0.00 0.00 4.69
605 638 7.319646 CGTCCCATTTGAGATTTAAATTTGGA 58.680 34.615 1.43 0.00 0.00 3.53
620 653 2.450960 TTTCGCGTGCGTCCCATTTG 62.451 55.000 14.47 0.00 40.74 2.32
705 791 4.629634 GGTTTGTTTGGTCACTTTCTTTGG 59.370 41.667 0.00 0.00 0.00 3.28
706 792 5.120053 GTGGTTTGTTTGGTCACTTTCTTTG 59.880 40.000 0.00 0.00 0.00 2.77
707 793 5.234752 GTGGTTTGTTTGGTCACTTTCTTT 58.765 37.500 0.00 0.00 0.00 2.52
735 821 0.315568 ATGAGGATTAGACGAGCCGC 59.684 55.000 0.00 0.00 0.00 6.53
736 822 1.068194 GGATGAGGATTAGACGAGCCG 60.068 57.143 0.00 0.00 0.00 5.52
737 823 1.273886 GGGATGAGGATTAGACGAGCC 59.726 57.143 0.00 0.00 0.00 4.70
738 824 1.273886 GGGGATGAGGATTAGACGAGC 59.726 57.143 0.00 0.00 0.00 5.03
739 825 1.896465 GGGGGATGAGGATTAGACGAG 59.104 57.143 0.00 0.00 0.00 4.18
740 826 1.503784 AGGGGGATGAGGATTAGACGA 59.496 52.381 0.00 0.00 0.00 4.20
741 827 1.896465 GAGGGGGATGAGGATTAGACG 59.104 57.143 0.00 0.00 0.00 4.18
742 828 2.261729 GGAGGGGGATGAGGATTAGAC 58.738 57.143 0.00 0.00 0.00 2.59
985 1075 2.589610 TACATCCTGCGCCTCCTCCT 62.590 60.000 4.18 0.00 0.00 3.69
1126 1216 2.461110 CGCGGACCCGGATTCAAAG 61.461 63.158 0.73 0.00 40.19 2.77
1151 1241 1.346395 ACAGACGCATCAAGGTAACCA 59.654 47.619 0.00 0.00 37.17 3.67
1156 1246 3.074412 CCTAAAACAGACGCATCAAGGT 58.926 45.455 0.00 0.00 0.00 3.50
1160 1250 1.448985 GCCCTAAAACAGACGCATCA 58.551 50.000 0.00 0.00 0.00 3.07
1196 1286 2.814280 ACAGACACCTAACAAGACCG 57.186 50.000 0.00 0.00 0.00 4.79
1292 1383 4.980903 GCTGGCACACAAACCGCG 62.981 66.667 0.00 0.00 0.00 6.46
1362 1466 7.936584 ACAAACAAGATTAGACGAAATTCCAA 58.063 30.769 0.00 0.00 0.00 3.53
1363 1467 7.227711 TGACAAACAAGATTAGACGAAATTCCA 59.772 33.333 0.00 0.00 0.00 3.53
1475 1580 5.806654 AAACAGATGTTGCCATAACCTTT 57.193 34.783 0.00 0.00 38.44 3.11
1637 1765 3.650942 TGTCCTAAAGATGTCAAGGTGGT 59.349 43.478 0.00 0.00 0.00 4.16
1638 1766 4.020218 TCTGTCCTAAAGATGTCAAGGTGG 60.020 45.833 0.00 0.00 0.00 4.61
1639 1767 5.152623 TCTGTCCTAAAGATGTCAAGGTG 57.847 43.478 0.00 0.00 0.00 4.00
1640 1768 5.308237 AGTTCTGTCCTAAAGATGTCAAGGT 59.692 40.000 0.00 0.00 0.00 3.50
1779 1907 5.490139 AATACATCACTCTGCAAATTCCG 57.510 39.130 0.00 0.00 0.00 4.30
1793 1921 8.927411 TCTCTAATGACCTGATCAAATACATCA 58.073 33.333 0.00 0.00 41.93 3.07
1914 2042 6.974048 TGCTGATGAAATGGTGAAATTAATCG 59.026 34.615 0.00 0.00 0.00 3.34
2014 2142 6.038603 GTCATAAACATAAAGCAGATCAGGCA 59.961 38.462 11.35 0.00 0.00 4.75
2705 2834 7.595311 ACAAAAAGTGAATGAAACAGGAAAC 57.405 32.000 0.00 0.00 0.00 2.78
2729 2858 3.056393 AGTCCGGTAATCGTGTTCATCAA 60.056 43.478 0.00 0.00 37.11 2.57
2951 3082 3.559238 ATTCGCACTGGAAACATTCAC 57.441 42.857 0.00 0.00 41.51 3.18
3036 3174 6.439058 GGACTGAGGAGCAATACCTATCTTAT 59.561 42.308 0.00 0.00 37.93 1.73
3040 3178 4.156477 AGGACTGAGGAGCAATACCTATC 58.844 47.826 0.00 0.00 37.93 2.08
3072 3211 7.133513 CGTTTATGGTGCTGTTTAACTAACAA 58.866 34.615 0.00 0.00 45.69 2.83
3078 3222 3.891324 TGCGTTTATGGTGCTGTTTAAC 58.109 40.909 0.00 0.00 0.00 2.01
3089 3233 5.163663 ACTGGTCAATGTATTGCGTTTATGG 60.164 40.000 0.00 0.00 37.68 2.74
3115 3259 2.857186 TGTCTAAGACATGCTGCCAA 57.143 45.000 0.00 0.00 37.67 4.52
3696 3845 4.130118 AGTTGTTGCCTCTGACTAAACAG 58.870 43.478 0.00 0.00 39.02 3.16
3853 4002 4.464069 AGATGCCAGTCTCAACTAAGTC 57.536 45.455 0.00 0.00 33.25 3.01
3953 4103 3.756082 ACAAGGGATTATGCCAGGAAA 57.244 42.857 5.38 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.