Multiple sequence alignment - TraesCS1A01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G279800 chr1A 100.000 5884 0 0 1 5884 477014090 477019973 0.000000e+00 10866.0
1 TraesCS1A01G279800 chr1D 92.163 3356 152 51 2571 5884 376780590 376783876 0.000000e+00 4638.0
2 TraesCS1A01G279800 chr1D 88.201 2407 123 66 50 2401 376778198 376780498 0.000000e+00 2723.0
3 TraesCS1A01G279800 chr1D 93.023 43 3 0 2474 2516 200548921 200548963 4.920000e-06 63.9
4 TraesCS1A01G279800 chr1B 91.853 3351 154 56 2567 5884 503513588 503516852 0.000000e+00 4566.0
5 TraesCS1A01G279800 chr1B 87.966 1986 101 43 1 1916 503511137 503513054 0.000000e+00 2217.0
6 TraesCS1A01G279800 chr1B 95.500 200 9 0 2025 2224 503513062 503513261 2.650000e-83 320.0
7 TraesCS1A01G279800 chr6A 93.478 46 3 0 2474 2519 448702222 448702177 1.060000e-07 69.4
8 TraesCS1A01G279800 chr6A 91.304 46 4 0 2474 2519 432824799 432824754 4.920000e-06 63.9
9 TraesCS1A01G279800 chr7B 95.238 42 2 0 2476 2517 385504223 385504264 3.810000e-07 67.6
10 TraesCS1A01G279800 chr7A 93.478 46 2 1 2472 2516 734101364 734101409 3.810000e-07 67.6
11 TraesCS1A01G279800 chr2B 95.122 41 2 0 2476 2516 244530721 244530761 1.370000e-06 65.8
12 TraesCS1A01G279800 chrUn 93.023 43 3 0 2474 2516 75920476 75920518 4.920000e-06 63.9
13 TraesCS1A01G279800 chr6B 88.679 53 3 3 2466 2516 150290184 150290235 1.770000e-05 62.1
14 TraesCS1A01G279800 chr2A 94.737 38 2 0 2476 2513 202037107 202037144 6.370000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G279800 chr1A 477014090 477019973 5883 False 10866.000000 10866 100.000 1 5884 1 chr1A.!!$F1 5883
1 TraesCS1A01G279800 chr1D 376778198 376783876 5678 False 3680.500000 4638 90.182 50 5884 2 chr1D.!!$F2 5834
2 TraesCS1A01G279800 chr1B 503511137 503516852 5715 False 2367.666667 4566 91.773 1 5884 3 chr1B.!!$F1 5883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 749 0.037605 CGGTCTACACCTTCCACACC 60.038 60.0 0.00 0.0 41.17 4.16 F
2285 2413 0.109827 CGTTTGATGATGCGTGGCAA 60.110 50.0 0.00 0.0 43.62 4.52 F
3056 3249 0.167470 CTGTGCTCGCTTTGACCATG 59.833 55.0 0.00 0.0 0.00 3.66 F
4060 4258 0.185175 ACTTCTTTCCTGCCGGGTTT 59.815 50.0 2.18 0.0 36.25 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2567 2752 0.035152 ATCTTGGCATTGCGTCAGGA 60.035 50.0 1.91 2.56 0.00 3.86 R
3210 3403 0.040425 GCGCCAAACACGAGAATGTT 60.040 50.0 0.00 0.00 44.76 2.71 R
4346 4544 1.249407 GTGCCCCGTAAATTTCACCA 58.751 50.0 0.00 0.00 0.00 4.17 R
5230 5429 0.103755 GCATCACGAGCATGAGGAGA 59.896 55.0 0.00 0.00 32.04 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.132453 CGCAGTACAGCAGTAGCAGTA 59.868 52.381 11.08 0.00 45.49 2.74
22 23 2.792890 CGCAGTACAGCAGTAGCAGTAG 60.793 54.545 11.08 0.00 42.39 2.57
23 24 2.803451 CAGTACAGCAGTAGCAGTAGC 58.197 52.381 0.00 0.00 42.39 3.58
180 196 3.804786 ATTGATTGCCGCATCAAATCA 57.195 38.095 16.81 10.52 39.81 2.57
269 285 4.796312 ACAAAACTCACAAAACGATTTCCG 59.204 37.500 0.00 0.00 45.44 4.30
337 353 1.265905 GATTGACACGTCACAAACCCC 59.734 52.381 0.00 0.00 39.66 4.95
343 359 2.520968 GTCACAAACCCCTGCCCT 59.479 61.111 0.00 0.00 0.00 5.19
345 361 0.608308 GTCACAAACCCCTGCCCTAC 60.608 60.000 0.00 0.00 0.00 3.18
347 363 1.465387 ACAAACCCCTGCCCTACCT 60.465 57.895 0.00 0.00 0.00 3.08
348 364 1.303282 CAAACCCCTGCCCTACCTC 59.697 63.158 0.00 0.00 0.00 3.85
351 367 4.431524 CCCCTGCCCTACCTCCCA 62.432 72.222 0.00 0.00 0.00 4.37
352 368 2.286121 CCCTGCCCTACCTCCCAA 60.286 66.667 0.00 0.00 0.00 4.12
366 393 4.893608 ACCTCCCAAATATTTTTGCACAC 58.106 39.130 0.00 0.00 40.77 3.82
422 451 3.371591 TGCATAACCGGATACAAACGTTC 59.628 43.478 9.46 0.00 0.00 3.95
501 530 6.682746 ACACATCTTGTCAGTTACTACTCTG 58.317 40.000 0.00 0.00 29.79 3.35
505 534 8.679100 ACATCTTGTCAGTTACTACTCTGATAC 58.321 37.037 0.00 0.00 41.67 2.24
534 563 0.582005 GAACCGTTCATCCGCTATGC 59.418 55.000 6.38 0.00 35.38 3.14
536 565 1.069765 CCGTTCATCCGCTATGCCT 59.930 57.895 0.00 0.00 35.38 4.75
659 709 1.663702 CGACCCGGATATGGAACGC 60.664 63.158 0.73 0.00 0.00 4.84
699 749 0.037605 CGGTCTACACCTTCCACACC 60.038 60.000 0.00 0.00 41.17 4.16
716 766 0.802494 ACCTCGGCATACAAAAAGCG 59.198 50.000 0.00 0.00 0.00 4.68
796 861 0.875728 ACGAGACCCATCGATCGATC 59.124 55.000 27.20 17.11 45.56 3.69
1055 1141 3.494254 AACCACCTCCACCGCCAA 61.494 61.111 0.00 0.00 0.00 4.52
1058 1144 2.203280 CACCTCCACCGCCAACAA 60.203 61.111 0.00 0.00 0.00 2.83
1059 1145 2.203294 ACCTCCACCGCCAACAAC 60.203 61.111 0.00 0.00 0.00 3.32
1060 1146 2.203280 CCTCCACCGCCAACAACA 60.203 61.111 0.00 0.00 0.00 3.33
1061 1147 2.551912 CCTCCACCGCCAACAACAC 61.552 63.158 0.00 0.00 0.00 3.32
1062 1148 1.821759 CTCCACCGCCAACAACACA 60.822 57.895 0.00 0.00 0.00 3.72
1063 1149 1.378646 TCCACCGCCAACAACACAA 60.379 52.632 0.00 0.00 0.00 3.33
1069 1155 1.226831 GCCAACAACACAACCACCG 60.227 57.895 0.00 0.00 0.00 4.94
1092 1178 1.064946 CTGCTCATCGTCGTCCTCC 59.935 63.158 0.00 0.00 0.00 4.30
1095 1181 1.644372 CTCATCGTCGTCCTCCTCG 59.356 63.158 0.00 0.00 0.00 4.63
1104 1193 2.812609 TCCTCCTCGTCGTCGTCG 60.813 66.667 5.50 5.50 38.33 5.12
1513 1602 2.657066 GGGTGGACGGAGGAGAACC 61.657 68.421 0.00 0.00 0.00 3.62
1527 1616 1.668151 GAACCTGACGGCACTCACC 60.668 63.158 0.00 0.00 0.00 4.02
1612 1701 6.463483 GCCCTTGCTTAATCTATTACGTAC 57.537 41.667 0.00 0.00 33.53 3.67
1617 1706 7.306399 CCTTGCTTAATCTATTACGTACAACCG 60.306 40.741 0.00 0.00 0.00 4.44
1702 1791 4.154918 CACTTCACTTGCTTAACCTCCATC 59.845 45.833 0.00 0.00 0.00 3.51
1703 1792 4.202461 ACTTCACTTGCTTAACCTCCATCA 60.202 41.667 0.00 0.00 0.00 3.07
1723 1812 2.982470 CAGCGCCAATTTCACTCTTTTC 59.018 45.455 2.29 0.00 0.00 2.29
1736 1825 8.728088 TTTCACTCTTTTCTTGCGAATAATTC 57.272 30.769 0.00 0.00 0.00 2.17
1739 1828 7.121168 TCACTCTTTTCTTGCGAATAATTCCAT 59.879 33.333 0.00 0.00 0.00 3.41
1762 1851 9.017509 CCATTATTATTACTACGTACTCCTCCA 57.982 37.037 0.00 0.00 0.00 3.86
1769 1858 8.701908 ATTACTACGTACTCCTCCATTATGAA 57.298 34.615 0.00 0.00 0.00 2.57
1770 1859 6.388435 ACTACGTACTCCTCCATTATGAAC 57.612 41.667 0.00 0.00 0.00 3.18
1772 1861 5.934402 ACGTACTCCTCCATTATGAACTT 57.066 39.130 0.00 0.00 0.00 2.66
1773 1862 5.661458 ACGTACTCCTCCATTATGAACTTG 58.339 41.667 0.00 0.00 0.00 3.16
1774 1863 5.050490 CGTACTCCTCCATTATGAACTTGG 58.950 45.833 0.00 0.00 0.00 3.61
1775 1864 5.395324 CGTACTCCTCCATTATGAACTTGGT 60.395 44.000 0.00 0.00 0.00 3.67
1776 1865 5.520748 ACTCCTCCATTATGAACTTGGTT 57.479 39.130 0.00 0.00 0.00 3.67
1777 1866 5.892348 ACTCCTCCATTATGAACTTGGTTT 58.108 37.500 0.00 0.00 0.00 3.27
1778 1867 6.314917 ACTCCTCCATTATGAACTTGGTTTT 58.685 36.000 0.00 0.00 0.00 2.43
1779 1868 7.466804 ACTCCTCCATTATGAACTTGGTTTTA 58.533 34.615 0.00 0.00 0.00 1.52
1780 1869 8.116026 ACTCCTCCATTATGAACTTGGTTTTAT 58.884 33.333 0.00 0.00 0.00 1.40
1781 1870 9.627123 CTCCTCCATTATGAACTTGGTTTTATA 57.373 33.333 0.00 0.00 0.00 0.98
1848 1937 5.116377 GCGAGTAGAATTGAAGTCGATGATC 59.884 44.000 14.84 0.00 40.22 2.92
1899 1988 4.452455 CGAATATTCCACACTAGAATGGGC 59.548 45.833 9.87 0.00 36.56 5.36
1916 2005 7.501844 AGAATGGGCAATAACTAACTCTAGAC 58.498 38.462 0.00 0.00 0.00 2.59
1919 2008 5.720041 TGGGCAATAACTAACTCTAGACAGT 59.280 40.000 0.00 0.00 0.00 3.55
1934 2023 7.016268 ACTCTAGACAGTTTACCTGAAAATGGA 59.984 37.037 3.00 0.00 45.34 3.41
1935 2024 7.918076 TCTAGACAGTTTACCTGAAAATGGAT 58.082 34.615 3.00 0.00 45.34 3.41
1954 2043 3.521560 GATGAGTTAGGACGTCATGCAA 58.478 45.455 18.91 0.00 30.93 4.08
2008 2103 2.866762 GCACCTTGTCTCATTATCCGAC 59.133 50.000 0.00 0.00 0.00 4.79
2013 2108 3.179443 TGTCTCATTATCCGACCAAGC 57.821 47.619 0.00 0.00 0.00 4.01
2014 2109 2.766263 TGTCTCATTATCCGACCAAGCT 59.234 45.455 0.00 0.00 0.00 3.74
2015 2110 3.958147 TGTCTCATTATCCGACCAAGCTA 59.042 43.478 0.00 0.00 0.00 3.32
2016 2111 4.404394 TGTCTCATTATCCGACCAAGCTAA 59.596 41.667 0.00 0.00 0.00 3.09
2017 2112 5.105106 TGTCTCATTATCCGACCAAGCTAAA 60.105 40.000 0.00 0.00 0.00 1.85
2018 2113 5.234543 GTCTCATTATCCGACCAAGCTAAAC 59.765 44.000 0.00 0.00 0.00 2.01
2019 2114 5.128827 TCTCATTATCCGACCAAGCTAAACT 59.871 40.000 0.00 0.00 0.00 2.66
2020 2115 5.741011 TCATTATCCGACCAAGCTAAACTT 58.259 37.500 0.00 0.00 40.05 2.66
2036 2131 3.944422 AACTTGTAAACAGACAGCACG 57.056 42.857 0.00 0.00 0.00 5.34
2038 2133 2.210116 CTTGTAAACAGACAGCACGGT 58.790 47.619 0.00 0.00 0.00 4.83
2054 2149 0.527565 CGGTCCAATTTGCTTCCTGG 59.472 55.000 0.00 0.00 0.00 4.45
2142 2248 2.684655 TGGGTAGGGTACACGGGC 60.685 66.667 0.00 0.00 33.88 6.13
2224 2335 3.202906 CCACTTGAACCGAAGAACTTGA 58.797 45.455 0.00 0.00 0.00 3.02
2244 2372 2.156098 ACGTGAGTTCCAGAGAGAGTC 58.844 52.381 0.00 0.00 46.40 3.36
2246 2374 2.520069 GTGAGTTCCAGAGAGAGTCCA 58.480 52.381 0.00 0.00 0.00 4.02
2248 2376 3.056891 GTGAGTTCCAGAGAGAGTCCAAG 60.057 52.174 0.00 0.00 0.00 3.61
2250 2378 1.066502 GTTCCAGAGAGAGTCCAAGGC 60.067 57.143 0.00 0.00 0.00 4.35
2251 2379 0.967887 TCCAGAGAGAGTCCAAGGCG 60.968 60.000 0.00 0.00 0.00 5.52
2252 2380 0.967887 CCAGAGAGAGTCCAAGGCGA 60.968 60.000 0.00 0.00 0.00 5.54
2253 2381 0.172352 CAGAGAGAGTCCAAGGCGAC 59.828 60.000 0.00 0.00 0.00 5.19
2254 2382 1.137825 GAGAGAGTCCAAGGCGACG 59.862 63.158 0.00 0.00 37.85 5.12
2256 2384 2.992114 AGAGTCCAAGGCGACGCT 60.992 61.111 20.77 2.64 37.98 5.07
2258 2386 2.048127 AGTCCAAGGCGACGCTTC 60.048 61.111 20.77 3.61 37.85 3.86
2259 2387 2.048127 GTCCAAGGCGACGCTTCT 60.048 61.111 20.77 6.26 0.00 2.85
2261 2389 2.262915 CCAAGGCGACGCTTCTCT 59.737 61.111 20.77 5.04 0.00 3.10
2264 2392 1.671850 CCAAGGCGACGCTTCTCTAAA 60.672 52.381 20.77 0.00 0.00 1.85
2266 2394 2.211353 AGGCGACGCTTCTCTAAATC 57.789 50.000 20.77 0.00 0.00 2.17
2267 2395 0.847035 GGCGACGCTTCTCTAAATCG 59.153 55.000 20.77 0.00 0.00 3.34
2268 2396 1.546834 GCGACGCTTCTCTAAATCGT 58.453 50.000 13.73 0.00 35.98 3.73
2271 2399 3.778070 GCGACGCTTCTCTAAATCGTTTG 60.778 47.826 13.73 0.00 33.21 2.93
2274 2402 5.456192 ACGCTTCTCTAAATCGTTTGATG 57.544 39.130 0.00 0.00 34.24 3.07
2275 2403 5.168569 ACGCTTCTCTAAATCGTTTGATGA 58.831 37.500 0.00 0.00 34.24 2.92
2278 2406 5.906285 GCTTCTCTAAATCGTTTGATGATGC 59.094 40.000 0.00 0.00 34.24 3.91
2279 2407 5.641777 TCTCTAAATCGTTTGATGATGCG 57.358 39.130 0.00 0.00 34.24 4.73
2280 2408 5.109210 TCTCTAAATCGTTTGATGATGCGT 58.891 37.500 0.00 0.00 34.24 5.24
2281 2409 5.005682 TCTCTAAATCGTTTGATGATGCGTG 59.994 40.000 0.00 0.00 34.24 5.34
2282 2410 2.830772 AATCGTTTGATGATGCGTGG 57.169 45.000 0.00 0.00 34.24 4.94
2283 2411 0.378257 ATCGTTTGATGATGCGTGGC 59.622 50.000 0.00 0.00 32.21 5.01
2284 2412 0.952984 TCGTTTGATGATGCGTGGCA 60.953 50.000 0.00 0.00 44.86 4.92
2285 2413 0.109827 CGTTTGATGATGCGTGGCAA 60.110 50.000 0.00 0.00 43.62 4.52
2286 2414 1.621107 GTTTGATGATGCGTGGCAAG 58.379 50.000 0.00 0.00 43.62 4.01
2287 2415 1.068333 GTTTGATGATGCGTGGCAAGT 60.068 47.619 1.69 0.00 43.62 3.16
2288 2416 0.522626 TTGATGATGCGTGGCAAGTG 59.477 50.000 1.69 0.00 43.62 3.16
2289 2417 1.307355 TGATGATGCGTGGCAAGTGG 61.307 55.000 1.69 0.00 43.62 4.00
2290 2418 1.996786 GATGATGCGTGGCAAGTGGG 61.997 60.000 1.69 0.00 43.62 4.61
2291 2419 2.672996 GATGCGTGGCAAGTGGGT 60.673 61.111 1.69 0.00 43.62 4.51
2292 2420 2.203480 ATGCGTGGCAAGTGGGTT 60.203 55.556 1.69 0.00 43.62 4.11
2293 2421 2.200170 GATGCGTGGCAAGTGGGTTC 62.200 60.000 1.69 0.00 43.62 3.62
2316 2444 3.696711 TTTAAATGCGCGCATGTTTTC 57.303 38.095 43.67 8.38 36.68 2.29
2326 2454 2.472488 GCGCATGTTTTCCTTGTTCTTG 59.528 45.455 0.30 0.00 0.00 3.02
2331 2459 0.387565 TTTTCCTTGTTCTTGGCGGC 59.612 50.000 0.00 0.00 0.00 6.53
2332 2460 0.753479 TTTCCTTGTTCTTGGCGGCA 60.753 50.000 7.97 7.97 0.00 5.69
2336 2464 1.270252 CCTTGTTCTTGGCGGCATTTT 60.270 47.619 14.32 0.00 0.00 1.82
2383 2511 5.491982 AGATACATCGCTTTTGTTTCCTCT 58.508 37.500 0.00 0.00 0.00 3.69
2394 2522 0.538287 GTTTCCTCTGGTGGCTGCTT 60.538 55.000 0.00 0.00 0.00 3.91
2422 2550 0.178990 GGGGGCAGTGATGATTACCC 60.179 60.000 0.00 0.00 36.56 3.69
2423 2551 0.550914 GGGGCAGTGATGATTACCCA 59.449 55.000 0.00 0.00 39.22 4.51
2424 2552 1.680338 GGGCAGTGATGATTACCCAC 58.320 55.000 0.00 0.00 37.30 4.61
2426 2554 1.134521 GGCAGTGATGATTACCCACGA 60.135 52.381 0.00 0.00 36.06 4.35
2427 2555 2.485479 GGCAGTGATGATTACCCACGAT 60.485 50.000 0.00 0.00 36.06 3.73
2428 2556 2.545526 GCAGTGATGATTACCCACGATG 59.454 50.000 0.00 0.00 36.06 3.84
2430 2558 2.435805 AGTGATGATTACCCACGATGCT 59.564 45.455 0.00 0.00 36.06 3.79
2431 2559 2.545526 GTGATGATTACCCACGATGCTG 59.454 50.000 0.00 0.00 0.00 4.41
2460 2643 2.028839 TGCTTTCCCTTGTAATCGTCGA 60.029 45.455 0.00 0.00 0.00 4.20
2461 2644 2.603560 GCTTTCCCTTGTAATCGTCGAG 59.396 50.000 0.00 0.00 0.00 4.04
2463 2646 4.676196 GCTTTCCCTTGTAATCGTCGAGTA 60.676 45.833 0.00 0.00 0.00 2.59
2465 2648 5.389859 TTCCCTTGTAATCGTCGAGTAAA 57.610 39.130 3.66 0.00 0.00 2.01
2466 2649 5.587388 TCCCTTGTAATCGTCGAGTAAAT 57.413 39.130 3.66 0.00 0.00 1.40
2467 2650 5.585390 TCCCTTGTAATCGTCGAGTAAATC 58.415 41.667 3.66 0.00 0.00 2.17
2468 2651 5.125900 TCCCTTGTAATCGTCGAGTAAATCA 59.874 40.000 3.66 0.00 0.00 2.57
2472 2655 8.388103 CCTTGTAATCGTCGAGTAAATCATTTT 58.612 33.333 3.66 0.00 0.00 1.82
2482 2665 9.028185 GTCGAGTAAATCATTTTAATACTCCGT 57.972 33.333 5.53 0.00 29.71 4.69
2483 2666 9.590451 TCGAGTAAATCATTTTAATACTCCGTT 57.410 29.630 5.53 0.00 29.71 4.44
2502 2685 9.294030 ACTCCGTTTGTAAACTAATATAAGACG 57.706 33.333 6.00 0.00 36.77 4.18
2503 2686 9.294030 CTCCGTTTGTAAACTAATATAAGACGT 57.706 33.333 6.00 0.00 36.77 4.34
2504 2687 9.638239 TCCGTTTGTAAACTAATATAAGACGTT 57.362 29.630 6.00 0.00 36.77 3.99
2520 2703 5.838531 AGACGTTTTAGATCACTAGAGGG 57.161 43.478 0.00 0.00 0.00 4.30
2521 2704 5.507637 AGACGTTTTAGATCACTAGAGGGA 58.492 41.667 0.00 0.00 0.00 4.20
2522 2705 5.591067 AGACGTTTTAGATCACTAGAGGGAG 59.409 44.000 0.00 0.00 0.00 4.30
2523 2706 5.262804 ACGTTTTAGATCACTAGAGGGAGT 58.737 41.667 0.00 0.00 0.00 3.85
2524 2707 5.125739 ACGTTTTAGATCACTAGAGGGAGTG 59.874 44.000 0.00 0.00 46.90 3.51
2525 2708 5.450688 CGTTTTAGATCACTAGAGGGAGTGG 60.451 48.000 0.00 0.00 45.79 4.00
2526 2709 4.883021 TTAGATCACTAGAGGGAGTGGT 57.117 45.455 0.00 0.00 45.79 4.16
2527 2710 5.988865 TTAGATCACTAGAGGGAGTGGTA 57.011 43.478 0.00 0.00 45.79 3.25
2528 2711 6.532119 TTAGATCACTAGAGGGAGTGGTAT 57.468 41.667 0.00 0.00 45.79 2.73
2529 2712 7.643612 TTAGATCACTAGAGGGAGTGGTATA 57.356 40.000 0.00 0.00 45.79 1.47
2530 2713 6.728366 AGATCACTAGAGGGAGTGGTATAT 57.272 41.667 0.00 0.00 45.79 0.86
2531 2714 7.832473 AGATCACTAGAGGGAGTGGTATATA 57.168 40.000 0.00 0.00 45.79 0.86
2532 2715 7.867921 AGATCACTAGAGGGAGTGGTATATAG 58.132 42.308 0.00 0.00 45.79 1.31
2533 2716 6.390048 TCACTAGAGGGAGTGGTATATAGG 57.610 45.833 0.00 0.00 45.79 2.57
2537 2720 7.728981 CACTAGAGGGAGTGGTATATAGGAAAA 59.271 40.741 0.00 0.00 42.68 2.29
2538 2721 8.465971 ACTAGAGGGAGTGGTATATAGGAAAAT 58.534 37.037 0.00 0.00 0.00 1.82
2541 2724 8.661345 AGAGGGAGTGGTATATAGGAAAATTTC 58.339 37.037 0.00 0.00 0.00 2.17
2552 2737 6.743575 ATAGGAAAATTTCACTTCTCCGTG 57.256 37.500 8.09 0.00 36.25 4.94
2557 2742 2.031258 TTTCACTTCTCCGTGCAACA 57.969 45.000 0.00 0.00 35.74 3.33
2558 2743 2.031258 TTCACTTCTCCGTGCAACAA 57.969 45.000 0.00 0.00 35.74 2.83
2559 2744 1.295792 TCACTTCTCCGTGCAACAAC 58.704 50.000 0.00 0.00 35.74 3.32
2562 2747 2.869801 CACTTCTCCGTGCAACAACTAA 59.130 45.455 0.00 0.00 35.74 2.24
2564 2749 4.024048 CACTTCTCCGTGCAACAACTAAAT 60.024 41.667 0.00 0.00 35.74 1.40
2567 2752 5.508200 TCTCCGTGCAACAACTAAATTTT 57.492 34.783 0.00 0.00 35.74 1.82
2568 2753 5.516090 TCTCCGTGCAACAACTAAATTTTC 58.484 37.500 0.00 0.00 35.74 2.29
2573 2761 5.173131 CGTGCAACAACTAAATTTTCCTGAC 59.827 40.000 0.00 0.00 35.74 3.51
2583 2771 1.035923 TTTTCCTGACGCAATGCCAA 58.964 45.000 0.00 0.00 0.00 4.52
2585 2773 0.250684 TTCCTGACGCAATGCCAAGA 60.251 50.000 0.00 0.00 0.00 3.02
2648 2839 8.764558 TGCCTCACTGGTATAGATTTAGTTTAA 58.235 33.333 0.00 0.00 38.35 1.52
2730 2921 2.297033 TCAAAGAAATTGCTGAGGTGCC 59.703 45.455 0.00 0.00 38.98 5.01
2777 2968 7.791029 ACAAGTAATGTCCTGGTTTTGAAATT 58.209 30.769 0.00 0.00 37.96 1.82
2841 3032 2.179424 AGGATCCTACCAACCCTCGTAT 59.821 50.000 14.27 0.00 0.00 3.06
2845 3036 5.070847 GGATCCTACCAACCCTCGTATAAAA 59.929 44.000 3.84 0.00 0.00 1.52
2846 3037 6.239800 GGATCCTACCAACCCTCGTATAAAAT 60.240 42.308 3.84 0.00 0.00 1.82
2965 3158 1.672356 CCGGCAGACACTTTCCAGG 60.672 63.158 0.00 0.00 0.00 4.45
2986 3179 3.504863 GCAACAATCTTGTGCCTATGTG 58.495 45.455 0.00 0.00 41.31 3.21
2999 3192 1.453155 CTATGTGCGGCCAAGAAAGT 58.547 50.000 2.24 0.00 0.00 2.66
3000 3193 1.398390 CTATGTGCGGCCAAGAAAGTC 59.602 52.381 2.24 0.00 0.00 3.01
3045 3238 0.651031 CAGATCATGTGCTGTGCTCG 59.349 55.000 0.00 0.00 0.00 5.03
3056 3249 0.167470 CTGTGCTCGCTTTGACCATG 59.833 55.000 0.00 0.00 0.00 3.66
3085 3278 1.628846 TCCTCTTAAACCTGGGCAGAC 59.371 52.381 0.00 0.00 0.00 3.51
3113 3306 2.627515 TATGGATGAAGCCAGACAGC 57.372 50.000 0.00 0.00 42.15 4.40
3134 3327 1.032114 GGGGTTACAGCCAGTGCATC 61.032 60.000 0.00 0.00 41.13 3.91
3136 3329 1.425428 GTTACAGCCAGTGCATCGC 59.575 57.895 0.00 0.00 41.13 4.58
3171 3364 3.625764 TCAGCGCAGTAAGTTTCTTGTTT 59.374 39.130 11.47 0.00 0.00 2.83
3176 3369 5.731126 GCGCAGTAAGTTTCTTGTTTTACCA 60.731 40.000 0.30 0.00 0.00 3.25
3177 3370 6.435428 CGCAGTAAGTTTCTTGTTTTACCAT 58.565 36.000 0.00 0.00 0.00 3.55
3178 3371 6.915843 CGCAGTAAGTTTCTTGTTTTACCATT 59.084 34.615 0.00 0.00 0.00 3.16
3179 3372 7.112984 CGCAGTAAGTTTCTTGTTTTACCATTC 59.887 37.037 0.00 0.00 0.00 2.67
3180 3373 7.112984 GCAGTAAGTTTCTTGTTTTACCATTCG 59.887 37.037 0.00 0.00 0.00 3.34
3186 3379 6.687081 TTCTTGTTTTACCATTCGTTCACT 57.313 33.333 0.00 0.00 0.00 3.41
3204 3397 4.074970 TCACTCCATTTTTCTTCCAGCTC 58.925 43.478 0.00 0.00 0.00 4.09
3220 3413 2.301577 GCTCCAGCTAACATTCTCGT 57.698 50.000 0.00 0.00 38.21 4.18
3221 3414 1.929836 GCTCCAGCTAACATTCTCGTG 59.070 52.381 0.00 0.00 38.21 4.35
3222 3415 2.675317 GCTCCAGCTAACATTCTCGTGT 60.675 50.000 0.00 0.00 38.21 4.49
3223 3416 3.589988 CTCCAGCTAACATTCTCGTGTT 58.410 45.455 0.00 0.00 44.09 3.32
3225 3418 3.745975 TCCAGCTAACATTCTCGTGTTTG 59.254 43.478 0.00 0.00 42.08 2.93
3226 3419 3.120199 CCAGCTAACATTCTCGTGTTTGG 60.120 47.826 0.00 0.00 42.08 3.28
3227 3420 2.484264 AGCTAACATTCTCGTGTTTGGC 59.516 45.455 0.00 4.07 42.08 4.52
3228 3421 2.724839 GCTAACATTCTCGTGTTTGGCG 60.725 50.000 0.00 0.00 42.08 5.69
3305 3499 0.815615 GCGGGCTAAACCAGATGAGG 60.816 60.000 0.00 0.00 42.05 3.86
3328 3522 2.041081 TGGGGGTATGTATATGCTTGCC 59.959 50.000 5.49 5.49 0.00 4.52
3418 3612 3.795623 GCAGTGGCAAAGATCATGAAT 57.204 42.857 0.00 0.00 40.72 2.57
3445 3639 2.293856 ACTGGTAATCCCCACTCTGGAT 60.294 50.000 0.00 0.00 44.55 3.41
3454 3648 1.068281 CCCACTCTGGATCATCAGTCG 59.932 57.143 0.00 0.00 40.96 4.18
3481 3675 2.224606 ACTGATGCAAGGTCTGTTGTG 58.775 47.619 0.00 0.00 0.00 3.33
3484 3681 1.195448 GATGCAAGGTCTGTTGTGTCG 59.805 52.381 0.00 0.00 0.00 4.35
3499 3696 1.215014 TGTCGTCTTTGCTGCTCGTG 61.215 55.000 0.00 0.00 0.00 4.35
3523 3721 3.916359 TGTAGGAAAACAGACACACCA 57.084 42.857 0.00 0.00 0.00 4.17
3527 3725 3.697166 AGGAAAACAGACACACCAAGTT 58.303 40.909 0.00 0.00 0.00 2.66
3536 3734 4.271049 CAGACACACCAAGTTAACTGACAG 59.729 45.833 9.34 0.00 0.00 3.51
3537 3735 2.943033 ACACACCAAGTTAACTGACAGC 59.057 45.455 9.34 0.00 0.00 4.40
3591 3789 2.804697 TTCGACGTGGATCACTTCAA 57.195 45.000 0.00 0.00 33.16 2.69
3748 3946 5.069516 ACTGCAGGAACATCAAAAGTTCATT 59.930 36.000 19.93 0.00 45.45 2.57
3983 4181 3.520696 TGAGAGACTGAAAAGGGGATCA 58.479 45.455 0.00 0.00 0.00 2.92
4050 4248 6.486993 ACTCCTACATCAAAACACTTCTTTCC 59.513 38.462 0.00 0.00 0.00 3.13
4051 4249 6.601332 TCCTACATCAAAACACTTCTTTCCT 58.399 36.000 0.00 0.00 0.00 3.36
4052 4250 6.486657 TCCTACATCAAAACACTTCTTTCCTG 59.513 38.462 0.00 0.00 0.00 3.86
4054 4252 4.202151 ACATCAAAACACTTCTTTCCTGCC 60.202 41.667 0.00 0.00 0.00 4.85
4056 4254 1.318576 AAACACTTCTTTCCTGCCGG 58.681 50.000 0.00 0.00 0.00 6.13
4057 4255 0.537371 AACACTTCTTTCCTGCCGGG 60.537 55.000 2.18 0.00 0.00 5.73
4058 4256 1.073199 CACTTCTTTCCTGCCGGGT 59.927 57.895 2.18 0.00 36.25 5.28
4059 4257 0.537371 CACTTCTTTCCTGCCGGGTT 60.537 55.000 2.18 0.00 36.25 4.11
4060 4258 0.185175 ACTTCTTTCCTGCCGGGTTT 59.815 50.000 2.18 0.00 36.25 3.27
4091 4289 4.851843 TGCAGATCACTGATCCTTGATTT 58.148 39.130 14.41 0.57 46.03 2.17
4094 4292 6.885918 TGCAGATCACTGATCCTTGATTTTTA 59.114 34.615 14.41 0.00 46.03 1.52
4243 4441 1.472376 GGAGAAGGAGATCAACAGCGG 60.472 57.143 0.00 0.00 0.00 5.52
4346 4544 6.158598 CAGCACTAAAATTTACATTGTGGCT 58.841 36.000 0.00 0.00 0.00 4.75
4409 4607 5.092781 GCAGAATACCCAAACATTTACACG 58.907 41.667 0.00 0.00 0.00 4.49
4610 4808 1.338769 CCCGACAGGTAAGTTCTTGGG 60.339 57.143 0.00 0.00 35.12 4.12
4615 4813 4.392138 CGACAGGTAAGTTCTTGGGAATTC 59.608 45.833 0.00 0.00 33.71 2.17
4784 4982 1.957877 GAGGATAGACTTGGAGGTCCG 59.042 57.143 0.00 0.00 39.43 4.79
4814 5012 1.938585 TACCTGGTGAGAGTCCAAGG 58.061 55.000 10.23 0.00 34.35 3.61
4890 5088 2.999355 CAGAGAGTAAAGTGAAGCAGGC 59.001 50.000 0.00 0.00 0.00 4.85
4893 5091 3.406764 AGAGTAAAGTGAAGCAGGCTTG 58.593 45.455 11.85 0.00 36.26 4.01
4934 5132 2.047844 TTCAGAGACGCTGCTGCC 60.048 61.111 10.24 0.00 44.52 4.85
5122 5321 6.127366 TGCATTGTTGAGAGGAAACTTTTTCT 60.127 34.615 0.00 0.00 44.43 2.52
5124 5323 7.379797 GCATTGTTGAGAGGAAACTTTTTCTAC 59.620 37.037 0.00 0.00 44.43 2.59
5176 5375 5.655090 TCGAAGTACTTGAAGGATCATACCA 59.345 40.000 14.14 0.00 34.96 3.25
5186 5385 8.621532 TTGAAGGATCATACCAGCAATTATAC 57.378 34.615 0.00 0.00 34.96 1.47
5191 5390 6.820656 GGATCATACCAGCAATTATACAGGAG 59.179 42.308 0.00 0.00 0.00 3.69
5222 5421 2.101249 TGAAAACACGTTAGGTCGAGGT 59.899 45.455 0.00 0.00 34.70 3.85
5223 5422 2.428888 AAACACGTTAGGTCGAGGTC 57.571 50.000 0.00 0.00 34.70 3.85
5224 5423 1.321474 AACACGTTAGGTCGAGGTCA 58.679 50.000 0.00 0.00 34.70 4.02
5225 5424 1.542492 ACACGTTAGGTCGAGGTCAT 58.458 50.000 0.00 0.00 34.70 3.06
5226 5425 2.715046 ACACGTTAGGTCGAGGTCATA 58.285 47.619 0.00 0.00 34.70 2.15
5227 5426 2.421424 ACACGTTAGGTCGAGGTCATAC 59.579 50.000 0.00 0.00 34.70 2.39
5228 5427 2.421073 CACGTTAGGTCGAGGTCATACA 59.579 50.000 0.00 0.00 34.70 2.29
5229 5428 2.421424 ACGTTAGGTCGAGGTCATACAC 59.579 50.000 0.00 0.00 34.70 2.90
5230 5429 2.681848 CGTTAGGTCGAGGTCATACACT 59.318 50.000 0.00 0.00 0.00 3.55
5231 5430 3.242673 CGTTAGGTCGAGGTCATACACTC 60.243 52.174 0.00 0.00 0.00 3.51
5232 5431 2.810870 AGGTCGAGGTCATACACTCT 57.189 50.000 0.00 0.00 0.00 3.24
5233 5432 2.645802 AGGTCGAGGTCATACACTCTC 58.354 52.381 0.00 0.00 0.00 3.20
5234 5433 1.677052 GGTCGAGGTCATACACTCTCC 59.323 57.143 0.00 0.00 0.00 3.71
5305 5521 6.445786 ACTGGGTGGGTTAGTAAGAATAATGA 59.554 38.462 0.00 0.00 0.00 2.57
5306 5522 7.128883 ACTGGGTGGGTTAGTAAGAATAATGAT 59.871 37.037 0.00 0.00 0.00 2.45
5307 5523 7.287061 TGGGTGGGTTAGTAAGAATAATGATG 58.713 38.462 0.00 0.00 0.00 3.07
5349 5565 4.116238 GCTGTAGAAATCTGCTACCAGTC 58.884 47.826 0.00 0.00 40.09 3.51
5449 5665 4.082136 ACCTGACTGTAGCTGCTAGTAAAC 60.082 45.833 10.13 0.66 0.00 2.01
5496 5715 4.881273 TCGCAAATGTGTGCTCCTTTATAT 59.119 37.500 0.00 0.00 42.62 0.86
5559 5781 9.601217 TCTTAGAAATTACAGAGAAAGGCATAC 57.399 33.333 0.00 0.00 0.00 2.39
5567 5789 8.856153 TTACAGAGAAAGGCATACAAAATGTA 57.144 30.769 0.00 0.00 37.24 2.29
5580 5802 5.091261 ACAAAATGTAGGAGGCAGACTAG 57.909 43.478 0.00 0.00 0.00 2.57
5592 5814 5.091261 AGGCAGACTAGTTGAACCATAAG 57.909 43.478 0.00 0.00 0.00 1.73
5602 5824 2.343101 TGAACCATAAGCTTTCGACGG 58.657 47.619 3.20 0.86 0.00 4.79
5612 5834 2.279502 CTTTCGACGGGATCAGCCGA 62.280 60.000 16.14 6.12 37.63 5.54
5613 5835 1.672854 TTTCGACGGGATCAGCCGAT 61.673 55.000 16.14 2.09 37.63 4.18
5641 5863 2.514160 ACCTGGTTCTATCCCCAAATCC 59.486 50.000 0.00 0.00 0.00 3.01
5642 5864 2.158460 CCTGGTTCTATCCCCAAATCCC 60.158 54.545 0.00 0.00 0.00 3.85
5643 5865 1.856920 TGGTTCTATCCCCAAATCCCC 59.143 52.381 0.00 0.00 0.00 4.81
5644 5866 1.856920 GGTTCTATCCCCAAATCCCCA 59.143 52.381 0.00 0.00 0.00 4.96
5645 5867 2.246327 GGTTCTATCCCCAAATCCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
5646 5868 3.310288 GGTTCTATCCCCAAATCCCCAAA 60.310 47.826 0.00 0.00 0.00 3.28
5647 5869 4.556697 GTTCTATCCCCAAATCCCCAAAT 58.443 43.478 0.00 0.00 0.00 2.32
5648 5870 4.469469 TCTATCCCCAAATCCCCAAATC 57.531 45.455 0.00 0.00 0.00 2.17
5653 5875 2.387757 CCCAAATCCCCAAATCGATGT 58.612 47.619 0.00 0.00 0.00 3.06
5655 5877 2.101249 CCAAATCCCCAAATCGATGTGG 59.899 50.000 25.57 25.57 37.50 4.17
5688 5910 2.123251 AGGGGATCTGGTCGCGAT 60.123 61.111 14.06 0.00 40.50 4.58
5709 5931 2.782198 GTCAACGAGGCGAACATAAC 57.218 50.000 0.00 0.00 0.00 1.89
5736 5959 1.690219 CGGGGAAGAGATGGACCTGG 61.690 65.000 0.00 0.00 0.00 4.45
5762 5985 3.499737 CCGTGCTCGCCAACATCC 61.500 66.667 1.89 0.00 35.54 3.51
5765 5988 1.078848 GTGCTCGCCAACATCCTCT 60.079 57.895 0.00 0.00 0.00 3.69
5769 5992 3.197790 CGCCAACATCCTCTGCCG 61.198 66.667 0.00 0.00 0.00 5.69
5770 5993 2.825836 GCCAACATCCTCTGCCGG 60.826 66.667 0.00 0.00 0.00 6.13
5772 5995 3.197790 CAACATCCTCTGCCGGCG 61.198 66.667 23.90 16.91 0.00 6.46
5773 5996 4.473520 AACATCCTCTGCCGGCGG 62.474 66.667 30.18 30.18 0.00 6.13
5855 6100 4.732784 TCGGAGAGCATTTTATTTTGTGC 58.267 39.130 0.00 0.00 37.84 4.57
5857 6102 4.560035 CGGAGAGCATTTTATTTTGTGCTG 59.440 41.667 3.17 0.00 46.98 4.41
5859 6104 6.335777 GGAGAGCATTTTATTTTGTGCTGAT 58.664 36.000 3.17 0.00 46.98 2.90
5862 6110 8.693542 AGAGCATTTTATTTTGTGCTGATAAC 57.306 30.769 3.17 0.00 46.98 1.89
5865 6113 8.526147 AGCATTTTATTTTGTGCTGATAACTCT 58.474 29.630 0.00 0.00 45.44 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.735237 GCTGGAGTAATGCTACTGCTA 57.265 47.619 5.27 0.00 45.99 3.49
21 22 1.021390 GCACGTGCTGGAGTAATGCT 61.021 55.000 32.55 0.00 38.21 3.79
22 23 1.425428 GCACGTGCTGGAGTAATGC 59.575 57.895 32.55 1.36 38.21 3.56
23 24 1.369091 GGGCACGTGCTGGAGTAATG 61.369 60.000 36.84 0.00 41.70 1.90
51 52 0.036306 GGTTGGAGGAATGACACGGT 59.964 55.000 0.00 0.00 0.00 4.83
180 196 5.122082 CCTGAAACATTTGCAACTGTGTTTT 59.878 36.000 25.26 16.82 42.80 2.43
269 285 1.369625 ACGGCAAGGATGATCGAAAC 58.630 50.000 0.00 0.00 0.00 2.78
274 290 2.158957 TCAGGTTACGGCAAGGATGATC 60.159 50.000 0.00 0.00 0.00 2.92
305 321 2.542597 GTGTCAATCAACGGGCGTATA 58.457 47.619 0.00 0.00 0.00 1.47
306 322 1.365699 GTGTCAATCAACGGGCGTAT 58.634 50.000 0.00 0.00 0.00 3.06
307 323 1.009903 CGTGTCAATCAACGGGCGTA 61.010 55.000 0.00 0.00 0.00 4.42
308 324 2.314647 CGTGTCAATCAACGGGCGT 61.315 57.895 0.00 0.00 0.00 5.68
337 353 3.884037 AATATTTGGGAGGTAGGGCAG 57.116 47.619 0.00 0.00 0.00 4.85
343 359 5.540337 TGTGTGCAAAAATATTTGGGAGGTA 59.460 36.000 0.39 0.00 44.93 3.08
345 361 4.892433 TGTGTGCAAAAATATTTGGGAGG 58.108 39.130 0.39 0.00 44.93 4.30
366 393 6.767080 TGTATCCGATTATGTTCGTGTTTTG 58.233 36.000 0.00 0.00 37.42 2.44
442 471 8.283291 GTGAATTATTTGGTATTCTGATCGGAC 58.717 37.037 2.94 0.00 33.08 4.79
452 481 5.065474 CCGACACGGTGAATTATTTGGTATT 59.935 40.000 16.29 0.00 42.73 1.89
454 483 3.933955 CCGACACGGTGAATTATTTGGTA 59.066 43.478 16.29 0.00 42.73 3.25
505 534 3.181520 GGATGAACGGTTCTGATCAAACG 60.182 47.826 20.53 3.31 42.43 3.60
534 563 2.653702 GATCGATCAGGGCCGAGG 59.346 66.667 20.52 0.00 38.25 4.63
536 565 3.295273 CCGATCGATCAGGGCCGA 61.295 66.667 24.40 0.00 39.25 5.54
543 572 1.027792 TGGTGTCGTCCGATCGATCA 61.028 55.000 24.40 3.68 41.78 2.92
648 698 0.250338 GGTGGGGAGCGTTCCATATC 60.250 60.000 20.67 4.61 45.98 1.63
659 709 4.143333 CGTAGTGGCGGTGGGGAG 62.143 72.222 0.00 0.00 0.00 4.30
699 749 0.857311 CGCGCTTTTTGTATGCCGAG 60.857 55.000 5.56 0.00 0.00 4.63
738 788 4.323477 TCGTTGGTTGAGGCCGGG 62.323 66.667 2.18 0.00 0.00 5.73
796 861 2.022902 CGTCGTCTGGATCGGTCG 59.977 66.667 0.00 0.00 0.00 4.79
797 862 1.062206 GTCGTCGTCTGGATCGGTC 59.938 63.158 0.00 0.00 0.00 4.79
798 863 2.747822 CGTCGTCGTCTGGATCGGT 61.748 63.158 0.00 0.00 0.00 4.69
799 864 2.022902 CGTCGTCGTCTGGATCGG 59.977 66.667 0.00 0.00 0.00 4.18
861 939 1.303970 GCCTCCTTCTTGCTTGCCT 60.304 57.895 0.00 0.00 0.00 4.75
862 940 2.346541 GGCCTCCTTCTTGCTTGCC 61.347 63.158 0.00 0.00 0.00 4.52
932 1016 0.685660 CCTAAGAATAGGTCGGCCCC 59.314 60.000 0.08 0.00 43.32 5.80
1051 1137 1.226831 CGGTGGTTGTGTTGTTGGC 60.227 57.895 0.00 0.00 0.00 4.52
1055 1141 2.118404 CAGGCGGTGGTTGTGTTGT 61.118 57.895 0.00 0.00 0.00 3.32
1058 1144 4.189580 AGCAGGCGGTGGTTGTGT 62.190 61.111 0.00 0.00 30.62 3.72
1059 1145 3.663176 CAGCAGGCGGTGGTTGTG 61.663 66.667 0.00 0.00 36.97 3.33
1069 1155 3.260483 CGACGATGAGCAGCAGGC 61.260 66.667 0.00 0.00 45.30 4.85
1080 1166 2.172372 CGACGAGGAGGACGACGAT 61.172 63.158 0.00 0.00 46.85 3.73
1092 1178 2.394912 GAGGACGACGACGACGAG 59.605 66.667 25.15 9.88 42.66 4.18
1306 1395 4.864334 CCTCATCCAGGCGTGCCC 62.864 72.222 7.39 0.00 34.56 5.36
1491 1580 2.365105 TCCTCCGTCCACCCCATC 60.365 66.667 0.00 0.00 0.00 3.51
1617 1706 7.432838 TGCATGAAAAACCGTTAACTAAAAGAC 59.567 33.333 3.71 0.00 0.00 3.01
1702 1791 2.712057 AAAGAGTGAAATTGGCGCTG 57.288 45.000 7.64 0.00 0.00 5.18
1703 1792 2.887152 AGAAAAGAGTGAAATTGGCGCT 59.113 40.909 7.64 0.00 0.00 5.92
1749 1838 6.183360 CCAAGTTCATAATGGAGGAGTACGTA 60.183 42.308 0.00 0.00 36.27 3.57
1750 1839 5.395324 CCAAGTTCATAATGGAGGAGTACGT 60.395 44.000 0.00 0.00 36.27 3.57
1751 1840 5.050490 CCAAGTTCATAATGGAGGAGTACG 58.950 45.833 0.00 0.00 36.27 3.67
1752 1841 5.990668 ACCAAGTTCATAATGGAGGAGTAC 58.009 41.667 0.00 0.00 37.66 2.73
1755 1844 6.840780 AAAACCAAGTTCATAATGGAGGAG 57.159 37.500 0.00 0.00 37.66 3.69
1868 1957 0.106149 GTGGAATATTCGGTCGGCCT 59.894 55.000 3.66 0.00 0.00 5.19
1919 2008 7.610305 GTCCTAACTCATCCATTTTCAGGTAAA 59.390 37.037 0.00 0.00 0.00 2.01
1934 2023 3.525537 CTTGCATGACGTCCTAACTCAT 58.474 45.455 14.12 0.00 0.00 2.90
1935 2024 2.930887 GCTTGCATGACGTCCTAACTCA 60.931 50.000 14.12 0.00 0.00 3.41
1954 2043 0.535335 TTTCTCGCCCAACTATCGCT 59.465 50.000 0.00 0.00 0.00 4.93
1978 2067 1.667830 GACAAGGTGCTGCGTGCTA 60.668 57.895 0.00 0.00 43.37 3.49
1979 2068 2.974698 GACAAGGTGCTGCGTGCT 60.975 61.111 0.00 0.00 43.37 4.40
1996 2091 5.360591 AGTTTAGCTTGGTCGGATAATGAG 58.639 41.667 0.00 0.00 0.00 2.90
2013 2108 5.432157 CGTGCTGTCTGTTTACAAGTTTAG 58.568 41.667 0.00 0.00 0.00 1.85
2014 2109 4.271533 CCGTGCTGTCTGTTTACAAGTTTA 59.728 41.667 0.00 0.00 0.00 2.01
2015 2110 3.064820 CCGTGCTGTCTGTTTACAAGTTT 59.935 43.478 0.00 0.00 0.00 2.66
2016 2111 2.612212 CCGTGCTGTCTGTTTACAAGTT 59.388 45.455 0.00 0.00 0.00 2.66
2017 2112 2.210116 CCGTGCTGTCTGTTTACAAGT 58.790 47.619 0.00 0.00 0.00 3.16
2018 2113 2.210116 ACCGTGCTGTCTGTTTACAAG 58.790 47.619 0.00 0.00 0.00 3.16
2019 2114 2.206750 GACCGTGCTGTCTGTTTACAA 58.793 47.619 0.00 0.00 32.39 2.41
2020 2115 1.539496 GGACCGTGCTGTCTGTTTACA 60.539 52.381 0.00 0.00 35.54 2.41
2021 2116 1.145803 GGACCGTGCTGTCTGTTTAC 58.854 55.000 0.00 0.00 35.54 2.01
2022 2117 0.753867 TGGACCGTGCTGTCTGTTTA 59.246 50.000 0.00 0.00 35.54 2.01
2023 2118 0.107410 TTGGACCGTGCTGTCTGTTT 60.107 50.000 0.00 0.00 35.54 2.83
2030 2125 0.314935 AAGCAAATTGGACCGTGCTG 59.685 50.000 11.27 0.00 46.34 4.41
2036 2131 1.546029 GACCAGGAAGCAAATTGGACC 59.454 52.381 0.00 0.00 34.76 4.46
2038 2133 1.073125 TCGACCAGGAAGCAAATTGGA 59.927 47.619 0.00 0.00 34.76 3.53
2054 2149 0.307146 CCGGGAACTCTACGATCGAC 59.693 60.000 24.34 3.79 0.00 4.20
2142 2248 3.367025 GGTCGTTATCACCAGTCTTTTCG 59.633 47.826 0.00 0.00 33.63 3.46
2212 2323 2.135664 ACTCACGTCAAGTTCTTCGG 57.864 50.000 0.00 0.00 0.00 4.30
2224 2335 2.156098 GACTCTCTCTGGAACTCACGT 58.844 52.381 0.00 0.00 0.00 4.49
2239 2367 2.493907 GAAGCGTCGCCTTGGACTCT 62.494 60.000 14.86 0.00 33.65 3.24
2240 2368 2.048127 AAGCGTCGCCTTGGACTC 60.048 61.111 14.86 0.00 34.75 3.36
2242 2370 2.048127 AGAAGCGTCGCCTTGGAC 60.048 61.111 14.86 0.00 0.00 4.02
2244 2372 0.108804 TTAGAGAAGCGTCGCCTTGG 60.109 55.000 14.86 0.00 0.00 3.61
2246 2374 2.541556 GATTTAGAGAAGCGTCGCCTT 58.458 47.619 14.86 7.62 0.00 4.35
2248 2376 0.847035 CGATTTAGAGAAGCGTCGCC 59.153 55.000 14.86 0.00 0.00 5.54
2250 2378 3.606777 TCAAACGATTTAGAGAAGCGTCG 59.393 43.478 2.48 0.00 33.66 5.12
2251 2379 5.288712 TCATCAAACGATTTAGAGAAGCGTC 59.711 40.000 2.48 0.00 33.66 5.19
2252 2380 5.168569 TCATCAAACGATTTAGAGAAGCGT 58.831 37.500 0.00 0.00 36.68 5.07
2253 2381 5.702622 TCATCAAACGATTTAGAGAAGCG 57.297 39.130 0.00 0.00 0.00 4.68
2254 2382 5.906285 GCATCATCAAACGATTTAGAGAAGC 59.094 40.000 0.00 0.00 0.00 3.86
2256 2384 5.580691 ACGCATCATCAAACGATTTAGAGAA 59.419 36.000 0.00 0.00 0.00 2.87
2258 2386 5.193216 CACGCATCATCAAACGATTTAGAG 58.807 41.667 0.00 0.00 0.00 2.43
2259 2387 4.033932 CCACGCATCATCAAACGATTTAGA 59.966 41.667 0.00 0.00 0.00 2.10
2261 2389 3.486708 GCCACGCATCATCAAACGATTTA 60.487 43.478 0.00 0.00 0.00 1.40
2264 2392 0.378257 GCCACGCATCATCAAACGAT 59.622 50.000 0.00 0.00 0.00 3.73
2266 2394 0.109827 TTGCCACGCATCATCAAACG 60.110 50.000 0.00 0.00 38.76 3.60
2267 2395 1.068333 ACTTGCCACGCATCATCAAAC 60.068 47.619 0.00 0.00 38.76 2.93
2268 2396 1.068402 CACTTGCCACGCATCATCAAA 60.068 47.619 0.00 0.00 38.76 2.69
2271 2399 1.430632 CCACTTGCCACGCATCATC 59.569 57.895 0.00 0.00 38.76 2.92
2274 2402 2.200170 GAACCCACTTGCCACGCATC 62.200 60.000 0.00 0.00 38.76 3.91
2275 2403 2.203480 AACCCACTTGCCACGCAT 60.203 55.556 0.00 0.00 38.76 4.73
2278 2406 1.106944 AAAGGAACCCACTTGCCACG 61.107 55.000 0.00 0.00 0.00 4.94
2279 2407 1.119684 AAAAGGAACCCACTTGCCAC 58.880 50.000 0.00 0.00 0.00 5.01
2280 2408 2.757894 TAAAAGGAACCCACTTGCCA 57.242 45.000 0.00 0.00 0.00 4.92
2281 2409 4.314961 CATTTAAAAGGAACCCACTTGCC 58.685 43.478 0.00 0.00 0.00 4.52
2282 2410 3.745975 GCATTTAAAAGGAACCCACTTGC 59.254 43.478 0.00 0.00 0.00 4.01
2283 2411 3.987220 CGCATTTAAAAGGAACCCACTTG 59.013 43.478 0.00 0.00 0.00 3.16
2284 2412 3.554129 GCGCATTTAAAAGGAACCCACTT 60.554 43.478 0.30 0.00 0.00 3.16
2285 2413 2.029380 GCGCATTTAAAAGGAACCCACT 60.029 45.455 0.30 0.00 0.00 4.00
2286 2414 2.333926 GCGCATTTAAAAGGAACCCAC 58.666 47.619 0.30 0.00 0.00 4.61
2287 2415 1.068194 CGCGCATTTAAAAGGAACCCA 60.068 47.619 8.75 0.00 0.00 4.51
2288 2416 1.624487 CGCGCATTTAAAAGGAACCC 58.376 50.000 8.75 0.00 0.00 4.11
2289 2417 0.989164 GCGCGCATTTAAAAGGAACC 59.011 50.000 29.10 0.00 0.00 3.62
2290 2418 1.692296 TGCGCGCATTTAAAAGGAAC 58.308 45.000 33.09 0.00 0.00 3.62
2291 2419 2.257894 CATGCGCGCATTTAAAAGGAA 58.742 42.857 41.73 13.27 33.90 3.36
2292 2420 1.201181 ACATGCGCGCATTTAAAAGGA 59.799 42.857 41.73 13.87 33.90 3.36
2293 2421 1.627879 ACATGCGCGCATTTAAAAGG 58.372 45.000 41.73 29.64 33.90 3.11
2316 2444 0.318120 AAATGCCGCCAAGAACAAGG 59.682 50.000 0.00 0.00 0.00 3.61
2336 2464 7.178451 TCTCACATGTAGAGACTATGGACAAAA 59.822 37.037 18.29 0.00 37.22 2.44
2403 2531 0.178990 GGGTAATCATCACTGCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
2415 2543 1.498865 CGGCAGCATCGTGGGTAATC 61.499 60.000 0.00 0.00 0.00 1.75
2417 2545 2.125310 CGGCAGCATCGTGGGTAA 60.125 61.111 0.00 0.00 0.00 2.85
2419 2547 4.457496 CTCGGCAGCATCGTGGGT 62.457 66.667 0.00 0.00 0.00 4.51
2422 2550 2.434884 AACCTCGGCAGCATCGTG 60.435 61.111 0.00 0.00 0.00 4.35
2423 2551 2.434884 CAACCTCGGCAGCATCGT 60.435 61.111 0.00 0.00 0.00 3.73
2424 2552 3.869272 GCAACCTCGGCAGCATCG 61.869 66.667 0.00 0.00 0.00 3.84
2426 2554 1.589716 GAAAGCAACCTCGGCAGCAT 61.590 55.000 0.00 0.00 0.00 3.79
2427 2555 2.203337 AAAGCAACCTCGGCAGCA 60.203 55.556 0.00 0.00 0.00 4.41
2428 2556 2.563427 GAAAGCAACCTCGGCAGC 59.437 61.111 0.00 0.00 0.00 5.25
2430 2558 2.282180 GGGAAAGCAACCTCGGCA 60.282 61.111 0.00 0.00 0.00 5.69
2431 2559 1.603739 AAGGGAAAGCAACCTCGGC 60.604 57.895 0.00 0.00 35.64 5.54
2477 2660 9.294030 ACGTCTTATATTAGTTTACAAACGGAG 57.706 33.333 0.00 0.00 43.51 4.63
2494 2677 9.064706 CCCTCTAGTGATCTAAAACGTCTTATA 57.935 37.037 0.00 0.00 0.00 0.98
2495 2678 7.778853 TCCCTCTAGTGATCTAAAACGTCTTAT 59.221 37.037 0.00 0.00 0.00 1.73
2496 2679 7.114754 TCCCTCTAGTGATCTAAAACGTCTTA 58.885 38.462 0.00 0.00 0.00 2.10
2497 2680 5.950549 TCCCTCTAGTGATCTAAAACGTCTT 59.049 40.000 0.00 0.00 0.00 3.01
2498 2681 5.507637 TCCCTCTAGTGATCTAAAACGTCT 58.492 41.667 0.00 0.00 0.00 4.18
2499 2682 5.357596 ACTCCCTCTAGTGATCTAAAACGTC 59.642 44.000 0.00 0.00 0.00 4.34
2500 2683 5.262804 ACTCCCTCTAGTGATCTAAAACGT 58.737 41.667 0.00 0.00 0.00 3.99
2501 2684 5.838531 ACTCCCTCTAGTGATCTAAAACG 57.161 43.478 0.00 0.00 0.00 3.60
2511 2694 6.390048 TCCTATATACCACTCCCTCTAGTG 57.610 45.833 0.00 0.00 45.33 2.74
2512 2695 7.417811 TTTCCTATATACCACTCCCTCTAGT 57.582 40.000 0.00 0.00 0.00 2.57
2513 2696 8.903059 ATTTTCCTATATACCACTCCCTCTAG 57.097 38.462 0.00 0.00 0.00 2.43
2514 2697 9.684702 AAATTTTCCTATATACCACTCCCTCTA 57.315 33.333 0.00 0.00 0.00 2.43
2515 2698 8.582891 AAATTTTCCTATATACCACTCCCTCT 57.417 34.615 0.00 0.00 0.00 3.69
2516 2699 8.437575 TGAAATTTTCCTATATACCACTCCCTC 58.562 37.037 6.68 0.00 0.00 4.30
2517 2700 8.218488 GTGAAATTTTCCTATATACCACTCCCT 58.782 37.037 6.68 0.00 0.00 4.20
2518 2701 8.218488 AGTGAAATTTTCCTATATACCACTCCC 58.782 37.037 6.68 0.00 0.00 4.30
2519 2702 9.628500 AAGTGAAATTTTCCTATATACCACTCC 57.372 33.333 6.68 0.00 31.66 3.85
2523 2706 9.847224 GGAGAAGTGAAATTTTCCTATATACCA 57.153 33.333 6.68 0.00 0.00 3.25
2524 2707 8.989980 CGGAGAAGTGAAATTTTCCTATATACC 58.010 37.037 6.68 2.59 0.00 2.73
2525 2708 9.543783 ACGGAGAAGTGAAATTTTCCTATATAC 57.456 33.333 6.68 0.00 0.00 1.47
2526 2709 9.542462 CACGGAGAAGTGAAATTTTCCTATATA 57.458 33.333 6.68 0.00 44.43 0.86
2527 2710 7.012421 GCACGGAGAAGTGAAATTTTCCTATAT 59.988 37.037 6.68 0.00 44.43 0.86
2528 2711 6.315393 GCACGGAGAAGTGAAATTTTCCTATA 59.685 38.462 6.68 0.00 44.43 1.31
2529 2712 5.123979 GCACGGAGAAGTGAAATTTTCCTAT 59.876 40.000 6.68 0.00 44.43 2.57
2530 2713 4.454504 GCACGGAGAAGTGAAATTTTCCTA 59.545 41.667 6.68 0.00 44.43 2.94
2531 2714 3.253432 GCACGGAGAAGTGAAATTTTCCT 59.747 43.478 6.68 1.28 44.43 3.36
2532 2715 3.004315 TGCACGGAGAAGTGAAATTTTCC 59.996 43.478 6.68 0.00 44.43 3.13
2533 2716 4.223320 TGCACGGAGAAGTGAAATTTTC 57.777 40.909 2.05 2.05 44.43 2.29
2537 2720 2.571212 TGTTGCACGGAGAAGTGAAAT 58.429 42.857 0.88 0.00 41.29 2.17
2538 2721 2.031258 TGTTGCACGGAGAAGTGAAA 57.969 45.000 0.88 0.00 44.43 2.69
2541 2724 1.299541 AGTTGTTGCACGGAGAAGTG 58.700 50.000 0.00 0.00 44.47 3.16
2546 2729 4.679654 GGAAAATTTAGTTGTTGCACGGAG 59.320 41.667 0.00 0.00 0.00 4.63
2548 2731 4.444056 CAGGAAAATTTAGTTGTTGCACGG 59.556 41.667 0.00 0.00 0.00 4.94
2552 2737 4.148174 GCGTCAGGAAAATTTAGTTGTTGC 59.852 41.667 0.00 0.00 0.00 4.17
2557 2742 4.923281 GCATTGCGTCAGGAAAATTTAGTT 59.077 37.500 0.00 0.00 0.00 2.24
2558 2743 4.485163 GCATTGCGTCAGGAAAATTTAGT 58.515 39.130 0.00 0.00 0.00 2.24
2559 2744 3.859386 GGCATTGCGTCAGGAAAATTTAG 59.141 43.478 1.91 0.00 0.00 1.85
2562 2747 1.617850 TGGCATTGCGTCAGGAAAATT 59.382 42.857 1.91 0.00 0.00 1.82
2564 2749 1.000385 CTTGGCATTGCGTCAGGAAAA 60.000 47.619 1.91 0.00 0.00 2.29
2567 2752 0.035152 ATCTTGGCATTGCGTCAGGA 60.035 50.000 1.91 2.56 0.00 3.86
2568 2753 0.813184 AATCTTGGCATTGCGTCAGG 59.187 50.000 1.91 0.00 0.00 3.86
2648 2839 6.784031 ACTGACTCCCTGAATTAGTCAATTT 58.216 36.000 8.85 0.00 46.52 1.82
2730 2921 0.246635 ACAACGGAGTCGAATGGAGG 59.753 55.000 0.00 0.00 45.00 4.30
2777 2968 6.757897 ACTTTCAGTTGTGTCAAGATGAAA 57.242 33.333 15.45 15.45 35.85 2.69
2805 2996 2.891580 GGATCCTGGTAGTTCGCTATCA 59.108 50.000 3.84 0.00 38.41 2.15
2873 3064 3.118408 TCTTTCTACCCGTGCAGCATATT 60.118 43.478 0.00 0.00 0.00 1.28
2874 3065 2.434336 TCTTTCTACCCGTGCAGCATAT 59.566 45.455 0.00 0.00 0.00 1.78
2875 3066 1.828595 TCTTTCTACCCGTGCAGCATA 59.171 47.619 0.00 0.00 0.00 3.14
2965 3158 3.504863 CACATAGGCACAAGATTGTTGC 58.495 45.455 0.00 3.93 39.91 4.17
2986 3179 0.241213 GAAAGGACTTTCTTGGCCGC 59.759 55.000 15.59 0.00 44.03 6.53
3045 3238 3.311966 GAAACTTCAGCATGGTCAAAGC 58.688 45.455 13.76 0.00 36.16 3.51
3056 3249 4.216472 CCAGGTTTAAGAGGAAACTTCAGC 59.784 45.833 0.00 0.00 44.43 4.26
3085 3278 2.613977 GGCTTCATCCATATCTCCGGTG 60.614 54.545 0.00 0.00 0.00 4.94
3113 3306 2.046314 CACTGGCTGTAACCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
3134 3327 1.135315 CTGATTCTTTGGGCGTGCG 59.865 57.895 0.00 0.00 0.00 5.34
3136 3329 1.135315 CGCTGATTCTTTGGGCGTG 59.865 57.895 0.00 0.00 40.78 5.34
3171 3364 6.488683 AGAAAAATGGAGTGAACGAATGGTAA 59.511 34.615 0.00 0.00 0.00 2.85
3176 3369 5.534654 TGGAAGAAAAATGGAGTGAACGAAT 59.465 36.000 0.00 0.00 0.00 3.34
3177 3370 4.884744 TGGAAGAAAAATGGAGTGAACGAA 59.115 37.500 0.00 0.00 0.00 3.85
3178 3371 4.456535 TGGAAGAAAAATGGAGTGAACGA 58.543 39.130 0.00 0.00 0.00 3.85
3179 3372 4.787598 CTGGAAGAAAAATGGAGTGAACG 58.212 43.478 0.00 0.00 34.07 3.95
3180 3373 4.279420 AGCTGGAAGAAAAATGGAGTGAAC 59.721 41.667 0.00 0.00 34.07 3.18
3186 3379 3.424703 CTGGAGCTGGAAGAAAAATGGA 58.575 45.455 0.00 0.00 34.07 3.41
3204 3397 3.120199 CCAAACACGAGAATGTTAGCTGG 60.120 47.826 0.00 0.00 42.01 4.85
3210 3403 0.040425 GCGCCAAACACGAGAATGTT 60.040 50.000 0.00 0.00 44.76 2.71
3211 3404 1.574428 GCGCCAAACACGAGAATGT 59.426 52.632 0.00 0.00 0.00 2.71
3212 3405 1.509787 CGCGCCAAACACGAGAATG 60.510 57.895 0.00 0.00 31.59 2.67
3213 3406 2.860293 CGCGCCAAACACGAGAAT 59.140 55.556 0.00 0.00 31.59 2.40
3214 3407 4.007940 GCGCGCCAAACACGAGAA 62.008 61.111 23.24 0.00 31.59 2.87
3305 3499 3.947834 GCAAGCATATACATACCCCCATC 59.052 47.826 0.00 0.00 0.00 3.51
3328 3522 2.470821 CGACAAATAGCGAGGGTTAGG 58.529 52.381 0.00 0.00 0.00 2.69
3418 3612 1.195442 TGGGGATTACCAGTGACGCA 61.195 55.000 0.00 0.00 42.91 5.24
3454 3648 2.079925 GACCTTGCATCAGTCCAGAAC 58.920 52.381 0.00 0.00 0.00 3.01
3467 3661 0.582005 GACGACACAACAGACCTTGC 59.418 55.000 0.00 0.00 0.00 4.01
3481 3675 1.215655 ACACGAGCAGCAAAGACGAC 61.216 55.000 0.00 0.00 0.00 4.34
3484 3681 0.601311 AGGACACGAGCAGCAAAGAC 60.601 55.000 0.00 0.00 0.00 3.01
3499 3696 3.808174 GTGTGTCTGTTTTCCTACAGGAC 59.192 47.826 0.00 0.00 45.39 3.85
3517 3715 3.206150 AGCTGTCAGTTAACTTGGTGTG 58.794 45.455 5.07 0.00 0.00 3.82
3518 3716 3.560636 AGCTGTCAGTTAACTTGGTGT 57.439 42.857 5.07 0.00 0.00 4.16
3536 3734 4.904154 GTCACTGTATTCAAAACGACAAGC 59.096 41.667 0.00 0.00 0.00 4.01
3537 3735 6.287107 AGTCACTGTATTCAAAACGACAAG 57.713 37.500 0.00 0.00 0.00 3.16
3591 3789 4.664688 ATGTCCTCCTTCAATGTTTCCT 57.335 40.909 0.00 0.00 0.00 3.36
3725 3923 4.572985 TGAACTTTTGATGTTCCTGCAG 57.427 40.909 6.78 6.78 42.04 4.41
3748 3946 1.567537 GCGAGCGCTTAAACACACA 59.432 52.632 13.26 0.00 38.26 3.72
3983 4181 3.055819 AGTGAAGTGCGATGTAATGGTCT 60.056 43.478 0.00 0.00 0.00 3.85
4022 4220 9.574516 AAAGAAGTGTTTTGATGTAGGAGTATT 57.425 29.630 0.00 0.00 0.00 1.89
4023 4221 9.220767 GAAAGAAGTGTTTTGATGTAGGAGTAT 57.779 33.333 0.00 0.00 0.00 2.12
4024 4222 7.660208 GGAAAGAAGTGTTTTGATGTAGGAGTA 59.340 37.037 0.00 0.00 0.00 2.59
4025 4223 6.486993 GGAAAGAAGTGTTTTGATGTAGGAGT 59.513 38.462 0.00 0.00 0.00 3.85
4026 4224 6.712547 AGGAAAGAAGTGTTTTGATGTAGGAG 59.287 38.462 0.00 0.00 0.00 3.69
4027 4225 6.486657 CAGGAAAGAAGTGTTTTGATGTAGGA 59.513 38.462 0.00 0.00 0.00 2.94
4028 4226 6.672147 CAGGAAAGAAGTGTTTTGATGTAGG 58.328 40.000 0.00 0.00 0.00 3.18
4029 4227 6.145535 GCAGGAAAGAAGTGTTTTGATGTAG 58.854 40.000 0.00 0.00 0.00 2.74
4030 4228 5.009610 GGCAGGAAAGAAGTGTTTTGATGTA 59.990 40.000 0.00 0.00 0.00 2.29
4031 4229 4.202151 GGCAGGAAAGAAGTGTTTTGATGT 60.202 41.667 0.00 0.00 0.00 3.06
4032 4230 4.301628 GGCAGGAAAGAAGTGTTTTGATG 58.698 43.478 0.00 0.00 0.00 3.07
4033 4231 3.004734 CGGCAGGAAAGAAGTGTTTTGAT 59.995 43.478 0.00 0.00 0.00 2.57
4034 4232 2.357637 CGGCAGGAAAGAAGTGTTTTGA 59.642 45.455 0.00 0.00 0.00 2.69
4035 4233 2.543653 CCGGCAGGAAAGAAGTGTTTTG 60.544 50.000 0.00 0.00 41.02 2.44
4063 4261 4.914983 AGGATCAGTGATCTGCAGAAAAA 58.085 39.130 27.89 6.37 41.10 1.94
4064 4262 4.564782 AGGATCAGTGATCTGCAGAAAA 57.435 40.909 27.89 9.19 41.10 2.29
4065 4263 4.019950 TCAAGGATCAGTGATCTGCAGAAA 60.020 41.667 27.89 9.60 41.10 2.52
4066 4264 3.516700 TCAAGGATCAGTGATCTGCAGAA 59.483 43.478 27.89 1.31 41.10 3.02
4094 4292 9.362539 CTGTGCAATTAATAGAAGAAGCAAATT 57.637 29.630 0.00 0.00 32.03 1.82
4105 4303 7.867909 CCTTCTCGTATCTGTGCAATTAATAGA 59.132 37.037 0.00 0.00 0.00 1.98
4110 4308 5.105513 TGTCCTTCTCGTATCTGTGCAATTA 60.106 40.000 0.00 0.00 0.00 1.40
4116 4314 3.119291 GCATGTCCTTCTCGTATCTGTG 58.881 50.000 0.00 0.00 0.00 3.66
4346 4544 1.249407 GTGCCCCGTAAATTTCACCA 58.751 50.000 0.00 0.00 0.00 4.17
4409 4607 1.546476 ACTGTGGCTAGACTGTAGTGC 59.454 52.381 0.00 0.00 0.00 4.40
4784 4982 5.361285 ACTCTCACCAGGTAATCTGTCATAC 59.639 44.000 0.00 0.00 41.83 2.39
4890 5088 4.320494 CGAACCATTTCCCTTTGAGACAAG 60.320 45.833 0.00 0.00 0.00 3.16
4893 5091 2.488153 CCGAACCATTTCCCTTTGAGAC 59.512 50.000 0.00 0.00 0.00 3.36
5096 5295 5.596836 AAAGTTTCCTCTCAACAATGCAA 57.403 34.783 0.00 0.00 0.00 4.08
5104 5303 6.895782 TCCAGTAGAAAAAGTTTCCTCTCAA 58.104 36.000 3.98 0.00 0.00 3.02
5122 5321 2.565391 TGCTCGTTCCATCTTTCCAGTA 59.435 45.455 0.00 0.00 0.00 2.74
5124 5323 1.734465 GTGCTCGTTCCATCTTTCCAG 59.266 52.381 0.00 0.00 0.00 3.86
5176 5375 3.853355 AGCTGCTCCTGTATAATTGCT 57.147 42.857 0.00 0.00 0.00 3.91
5186 5385 3.565482 TGTTTTCACTTTAGCTGCTCCTG 59.435 43.478 4.91 0.00 0.00 3.86
5222 5421 2.620585 CGAGCATGAGGAGAGTGTATGA 59.379 50.000 0.00 0.00 0.00 2.15
5223 5422 2.360483 ACGAGCATGAGGAGAGTGTATG 59.640 50.000 0.00 0.00 0.00 2.39
5224 5423 2.360483 CACGAGCATGAGGAGAGTGTAT 59.640 50.000 0.00 0.00 0.00 2.29
5225 5424 1.745653 CACGAGCATGAGGAGAGTGTA 59.254 52.381 0.00 0.00 0.00 2.90
5226 5425 0.529833 CACGAGCATGAGGAGAGTGT 59.470 55.000 0.00 0.00 0.00 3.55
5227 5426 0.813821 TCACGAGCATGAGGAGAGTG 59.186 55.000 0.00 0.00 0.00 3.51
5228 5427 1.408340 CATCACGAGCATGAGGAGAGT 59.592 52.381 0.00 0.00 32.04 3.24
5229 5428 1.868930 GCATCACGAGCATGAGGAGAG 60.869 57.143 0.00 0.00 32.04 3.20
5230 5429 0.103755 GCATCACGAGCATGAGGAGA 59.896 55.000 0.00 0.00 32.04 3.71
5231 5430 0.104487 AGCATCACGAGCATGAGGAG 59.896 55.000 0.00 0.00 32.04 3.69
5232 5431 0.538584 AAGCATCACGAGCATGAGGA 59.461 50.000 0.00 0.00 32.04 3.71
5233 5432 0.935898 GAAGCATCACGAGCATGAGG 59.064 55.000 0.00 0.00 33.52 3.86
5234 5433 0.935898 GGAAGCATCACGAGCATGAG 59.064 55.000 0.00 0.00 30.46 2.90
5305 5521 5.532406 AGCCGAAAAACATAGCATGATACAT 59.468 36.000 0.00 0.00 0.00 2.29
5306 5522 4.881273 AGCCGAAAAACATAGCATGATACA 59.119 37.500 0.00 0.00 0.00 2.29
5307 5523 5.207768 CAGCCGAAAAACATAGCATGATAC 58.792 41.667 0.00 0.00 0.00 2.24
5324 5540 2.100916 GGTAGCAGATTTCTACAGCCGA 59.899 50.000 0.00 0.00 38.45 5.54
5496 5715 9.319060 GGAGATAATATCTGCCCATATCATCTA 57.681 37.037 7.61 0.00 41.33 1.98
5559 5781 5.091261 ACTAGTCTGCCTCCTACATTTTG 57.909 43.478 0.00 0.00 0.00 2.44
5567 5789 1.903183 GGTTCAACTAGTCTGCCTCCT 59.097 52.381 0.00 0.00 0.00 3.69
5580 5802 3.424433 CCGTCGAAAGCTTATGGTTCAAC 60.424 47.826 0.00 0.00 32.90 3.18
5592 5814 2.174319 GGCTGATCCCGTCGAAAGC 61.174 63.158 0.00 0.00 34.82 3.51
5612 5834 4.846940 GGGGATAGAACCAGGTATTCAGAT 59.153 45.833 0.00 0.00 0.00 2.90
5613 5835 4.232091 GGGGATAGAACCAGGTATTCAGA 58.768 47.826 0.00 0.00 0.00 3.27
5641 5863 3.565482 CCAGATTACCACATCGATTTGGG 59.435 47.826 29.25 17.71 37.18 4.12
5642 5864 4.450976 TCCAGATTACCACATCGATTTGG 58.549 43.478 25.58 25.58 39.00 3.28
5643 5865 6.432936 CAATCCAGATTACCACATCGATTTG 58.567 40.000 4.51 4.51 0.00 2.32
5644 5866 5.009010 GCAATCCAGATTACCACATCGATTT 59.991 40.000 0.00 0.00 0.00 2.17
5645 5867 4.516698 GCAATCCAGATTACCACATCGATT 59.483 41.667 0.00 0.00 0.00 3.34
5646 5868 4.067896 GCAATCCAGATTACCACATCGAT 58.932 43.478 0.00 0.00 0.00 3.59
5647 5869 3.466836 GCAATCCAGATTACCACATCGA 58.533 45.455 0.00 0.00 0.00 3.59
5648 5870 2.221749 CGCAATCCAGATTACCACATCG 59.778 50.000 0.00 0.00 0.00 3.84
5653 5875 1.140852 CCTCCGCAATCCAGATTACCA 59.859 52.381 0.00 0.00 0.00 3.25
5655 5877 1.543429 CCCCTCCGCAATCCAGATTAC 60.543 57.143 0.00 0.00 0.00 1.89
5709 5931 1.961180 ATCTCTTCCCCGTCCTTGCG 61.961 60.000 0.00 0.00 0.00 4.85
5850 6095 6.346096 GGGTAATACAGAGTTATCAGCACAA 58.654 40.000 0.00 0.00 0.00 3.33
5851 6096 5.163343 GGGGTAATACAGAGTTATCAGCACA 60.163 44.000 0.00 0.00 0.00 4.57
5852 6097 5.298347 GGGGTAATACAGAGTTATCAGCAC 58.702 45.833 0.00 0.00 0.00 4.40
5853 6098 4.347000 GGGGGTAATACAGAGTTATCAGCA 59.653 45.833 0.00 0.00 0.00 4.41
5855 6100 6.749036 AAGGGGGTAATACAGAGTTATCAG 57.251 41.667 0.00 0.00 0.00 2.90
5857 6102 8.260099 AGTTAAGGGGGTAATACAGAGTTATC 57.740 38.462 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.