Multiple sequence alignment - TraesCS1A01G279500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G279500 chr1A 100.000 3733 0 0 1 3733 476908187 476911919 0.000000e+00 6894.0
1 TraesCS1A01G279500 chr1A 93.229 192 12 1 102 293 375466782 375466592 7.890000e-72 281.0
2 TraesCS1A01G279500 chr1D 92.248 3341 133 36 307 3586 376620418 376623693 0.000000e+00 4619.0
3 TraesCS1A01G279500 chr1D 94.805 77 3 1 3580 3655 376624029 376624105 6.550000e-23 119.0
4 TraesCS1A01G279500 chr1B 93.095 2013 81 24 307 2295 503350928 503352906 0.000000e+00 2894.0
5 TraesCS1A01G279500 chr1B 89.919 1478 80 24 2293 3733 503352987 503354432 0.000000e+00 1840.0
6 TraesCS1A01G279500 chr1B 85.227 176 26 0 103 278 593053212 593053037 8.240000e-42 182.0
7 TraesCS1A01G279500 chr6D 94.241 191 11 0 103 293 84476162 84476352 3.650000e-75 292.0
8 TraesCS1A01G279500 chr3A 94.161 137 8 0 102 238 715204443 715204307 3.780000e-50 209.0
9 TraesCS1A01G279500 chr3A 86.932 176 19 2 103 278 712702445 712702616 1.060000e-45 195.0
10 TraesCS1A01G279500 chr3A 85.475 179 25 1 101 278 595281893 595281715 6.370000e-43 185.0
11 TraesCS1A01G279500 chr7D 85.417 192 28 0 102 293 577853962 577854153 2.270000e-47 200.0
12 TraesCS1A01G279500 chr7B 87.006 177 22 1 102 278 87120901 87120726 8.180000e-47 198.0
13 TraesCS1A01G279500 chr4A 92.188 64 3 2 1571 1633 627293166 627293228 5.140000e-14 89.8
14 TraesCS1A01G279500 chr4A 92.982 57 3 1 1578 1634 627304375 627304430 8.590000e-12 82.4
15 TraesCS1A01G279500 chr4A 92.857 56 2 2 1578 1632 627006820 627006874 3.090000e-11 80.5
16 TraesCS1A01G279500 chr4A 92.857 56 2 2 1578 1632 627090322 627090376 3.090000e-11 80.5
17 TraesCS1A01G279500 chr4A 92.857 56 2 2 1578 1632 627169972 627170026 3.090000e-11 80.5
18 TraesCS1A01G279500 chr4A 94.231 52 1 2 103 152 558682456 558682507 1.110000e-10 78.7
19 TraesCS1A01G279500 chrUn 92.857 56 2 2 1578 1632 387318649 387318703 3.090000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G279500 chr1A 476908187 476911919 3732 False 6894 6894 100.0000 1 3733 1 chr1A.!!$F1 3732
1 TraesCS1A01G279500 chr1D 376620418 376624105 3687 False 2369 4619 93.5265 307 3655 2 chr1D.!!$F1 3348
2 TraesCS1A01G279500 chr1B 503350928 503354432 3504 False 2367 2894 91.5070 307 3733 2 chr1B.!!$F1 3426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.179009 ATCCGGCAGTTCATCATGGG 60.179 55.0 0.00 0.0 0.00 4.00 F
301 302 0.249120 CATCTACCAACCCAGCGACA 59.751 55.0 0.00 0.0 0.00 4.35 F
302 303 0.249398 ATCTACCAACCCAGCGACAC 59.751 55.0 0.00 0.0 0.00 3.67 F
776 787 0.516877 TTGACGCTTGATTTGCCTCG 59.483 50.0 0.00 0.0 0.00 4.63 F
1029 1051 0.698818 CTCTTGCCCCTTACCCAACT 59.301 55.0 0.00 0.0 0.00 3.16 F
1405 1446 1.055849 TTGGTAGGTGAGCTTCAGCA 58.944 50.0 14.76 0.0 46.52 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 1965 0.257616 ACCCGGGAAGAGAGAGAGAG 59.742 60.000 32.02 0.0 0.00 3.20 R
2037 2080 3.481453 AGAGCTTTTCCAACCTCAGAAC 58.519 45.455 0.00 0.0 0.00 3.01 R
2116 2159 7.148086 GCATACATCCTACTGTCCAATTTTGAA 60.148 37.037 0.00 0.0 0.00 2.69 R
2466 2597 1.206849 TGGTACATGAGCAGCATTCGA 59.793 47.619 0.00 0.0 34.15 3.71 R
2717 2848 1.683385 GAACTTCAGTTGCTGGGCTTT 59.317 47.619 0.00 0.0 38.56 3.51 R
3222 3374 0.331616 ACTAACCCAATCCTGTGCCC 59.668 55.000 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.770666 AGTACCGAACATGTGATCTTCG 58.229 45.455 9.41 9.41 37.20 3.79
25 26 3.442625 AGTACCGAACATGTGATCTTCGA 59.557 43.478 16.41 0.00 39.29 3.71
26 27 3.313012 ACCGAACATGTGATCTTCGAA 57.687 42.857 16.41 0.00 39.29 3.71
27 28 3.254060 ACCGAACATGTGATCTTCGAAG 58.746 45.455 19.35 19.35 39.29 3.79
28 29 3.056821 ACCGAACATGTGATCTTCGAAGA 60.057 43.478 28.85 28.85 39.29 2.87
29 30 3.549471 CCGAACATGTGATCTTCGAAGAG 59.451 47.826 29.89 18.61 39.29 2.85
30 31 4.415735 CGAACATGTGATCTTCGAAGAGA 58.584 43.478 29.89 17.82 39.29 3.10
31 32 5.039984 CGAACATGTGATCTTCGAAGAGAT 58.960 41.667 29.89 16.69 39.29 2.75
32 33 6.202226 CGAACATGTGATCTTCGAAGAGATA 58.798 40.000 29.89 18.44 39.29 1.98
33 34 6.693113 CGAACATGTGATCTTCGAAGAGATAA 59.307 38.462 29.89 17.36 39.29 1.75
34 35 7.220875 CGAACATGTGATCTTCGAAGAGATAAA 59.779 37.037 29.89 15.61 39.29 1.40
35 36 7.763172 ACATGTGATCTTCGAAGAGATAAAC 57.237 36.000 29.89 21.70 38.66 2.01
36 37 7.323420 ACATGTGATCTTCGAAGAGATAAACA 58.677 34.615 29.89 25.43 38.66 2.83
37 38 7.984050 ACATGTGATCTTCGAAGAGATAAACAT 59.016 33.333 29.89 26.22 38.66 2.71
38 39 7.761651 TGTGATCTTCGAAGAGATAAACATG 57.238 36.000 29.89 0.22 38.66 3.21
39 40 7.323420 TGTGATCTTCGAAGAGATAAACATGT 58.677 34.615 29.89 11.65 38.66 3.21
40 41 7.819415 TGTGATCTTCGAAGAGATAAACATGTT 59.181 33.333 29.89 4.92 38.66 2.71
41 42 8.660373 GTGATCTTCGAAGAGATAAACATGTTT 58.340 33.333 29.89 25.99 38.66 2.83
42 43 9.869757 TGATCTTCGAAGAGATAAACATGTTTA 57.130 29.630 29.89 28.30 38.66 2.01
45 46 9.098355 TCTTCGAAGAGATAAACATGTTTATGG 57.902 33.333 36.63 20.82 43.52 2.74
46 47 8.786826 TTCGAAGAGATAAACATGTTTATGGT 57.213 30.769 36.63 26.51 43.52 3.55
47 48 9.878667 TTCGAAGAGATAAACATGTTTATGGTA 57.121 29.630 36.63 18.35 43.52 3.25
48 49 9.878667 TCGAAGAGATAAACATGTTTATGGTAA 57.121 29.630 36.63 17.70 43.52 2.85
58 59 9.777297 AAACATGTTTATGGTAAATTTCTTGCT 57.223 25.926 22.10 0.00 38.66 3.91
59 60 9.777297 AACATGTTTATGGTAAATTTCTTGCTT 57.223 25.926 4.92 0.00 38.66 3.91
77 78 9.855021 TTCTTGCTTATTTTAATCTAAAGCCAC 57.145 29.630 3.19 0.00 41.41 5.01
78 79 9.019656 TCTTGCTTATTTTAATCTAAAGCCACA 57.980 29.630 3.19 0.00 41.41 4.17
79 80 9.807649 CTTGCTTATTTTAATCTAAAGCCACAT 57.192 29.630 3.19 0.00 41.41 3.21
80 81 9.585099 TTGCTTATTTTAATCTAAAGCCACATG 57.415 29.630 3.19 0.00 41.41 3.21
81 82 8.748412 TGCTTATTTTAATCTAAAGCCACATGT 58.252 29.630 0.00 0.00 41.41 3.21
85 86 7.695480 TTTTAATCTAAAGCCACATGTAGCA 57.305 32.000 18.56 0.00 0.00 3.49
86 87 6.677781 TTAATCTAAAGCCACATGTAGCAC 57.322 37.500 18.56 0.00 0.00 4.40
87 88 3.694043 TCTAAAGCCACATGTAGCACA 57.306 42.857 18.56 2.05 0.00 4.57
88 89 4.014569 TCTAAAGCCACATGTAGCACAA 57.985 40.909 18.56 2.06 0.00 3.33
89 90 4.588899 TCTAAAGCCACATGTAGCACAAT 58.411 39.130 18.56 4.03 0.00 2.71
90 91 5.739959 TCTAAAGCCACATGTAGCACAATA 58.260 37.500 18.56 4.92 0.00 1.90
91 92 4.701956 AAAGCCACATGTAGCACAATAC 57.298 40.909 18.56 0.00 0.00 1.89
92 93 2.279741 AGCCACATGTAGCACAATACG 58.720 47.619 18.56 0.00 0.00 3.06
93 94 2.006888 GCCACATGTAGCACAATACGT 58.993 47.619 11.61 0.00 0.00 3.57
94 95 3.118920 AGCCACATGTAGCACAATACGTA 60.119 43.478 18.56 0.00 0.00 3.57
95 96 3.619483 GCCACATGTAGCACAATACGTAA 59.381 43.478 11.61 0.00 0.00 3.18
96 97 4.093703 GCCACATGTAGCACAATACGTAAA 59.906 41.667 11.61 0.00 0.00 2.01
97 98 5.220777 GCCACATGTAGCACAATACGTAAAT 60.221 40.000 11.61 0.00 0.00 1.40
98 99 6.018588 GCCACATGTAGCACAATACGTAAATA 60.019 38.462 11.61 0.00 0.00 1.40
99 100 7.466185 GCCACATGTAGCACAATACGTAAATAA 60.466 37.037 11.61 0.00 0.00 1.40
100 101 8.391859 CCACATGTAGCACAATACGTAAATAAA 58.608 33.333 0.00 0.00 0.00 1.40
101 102 9.929722 CACATGTAGCACAATACGTAAATAAAT 57.070 29.630 0.00 0.00 0.00 1.40
137 138 5.515797 GGCATTACCCCTTTTCATTACTC 57.484 43.478 0.00 0.00 0.00 2.59
138 139 5.201243 GGCATTACCCCTTTTCATTACTCT 58.799 41.667 0.00 0.00 0.00 3.24
139 140 5.299531 GGCATTACCCCTTTTCATTACTCTC 59.700 44.000 0.00 0.00 0.00 3.20
140 141 5.885912 GCATTACCCCTTTTCATTACTCTCA 59.114 40.000 0.00 0.00 0.00 3.27
141 142 6.547510 GCATTACCCCTTTTCATTACTCTCAT 59.452 38.462 0.00 0.00 0.00 2.90
142 143 7.719633 GCATTACCCCTTTTCATTACTCTCATA 59.280 37.037 0.00 0.00 0.00 2.15
143 144 9.627123 CATTACCCCTTTTCATTACTCTCATAA 57.373 33.333 0.00 0.00 0.00 1.90
144 145 9.628500 ATTACCCCTTTTCATTACTCTCATAAC 57.372 33.333 0.00 0.00 0.00 1.89
145 146 6.113411 ACCCCTTTTCATTACTCTCATAACG 58.887 40.000 0.00 0.00 0.00 3.18
146 147 5.527582 CCCCTTTTCATTACTCTCATAACGG 59.472 44.000 0.00 0.00 0.00 4.44
147 148 6.346096 CCCTTTTCATTACTCTCATAACGGA 58.654 40.000 0.00 0.00 0.00 4.69
148 149 6.821665 CCCTTTTCATTACTCTCATAACGGAA 59.178 38.462 0.00 0.00 0.00 4.30
149 150 7.335924 CCCTTTTCATTACTCTCATAACGGAAA 59.664 37.037 0.00 0.00 0.00 3.13
150 151 8.893727 CCTTTTCATTACTCTCATAACGGAAAT 58.106 33.333 0.00 0.00 0.00 2.17
154 155 9.878667 TTCATTACTCTCATAACGGAAATAACA 57.121 29.630 0.00 0.00 0.00 2.41
158 159 9.529325 TTACTCTCATAACGGAAATAACATCAG 57.471 33.333 0.00 0.00 0.00 2.90
159 160 7.556844 ACTCTCATAACGGAAATAACATCAGT 58.443 34.615 0.00 0.00 0.00 3.41
160 161 8.041323 ACTCTCATAACGGAAATAACATCAGTT 58.959 33.333 0.00 0.00 41.74 3.16
161 162 8.420374 TCTCATAACGGAAATAACATCAGTTC 57.580 34.615 0.00 0.00 39.15 3.01
162 163 8.038351 TCTCATAACGGAAATAACATCAGTTCA 58.962 33.333 0.00 0.00 39.15 3.18
163 164 8.554835 TCATAACGGAAATAACATCAGTTCAA 57.445 30.769 0.00 0.00 39.15 2.69
164 165 8.447833 TCATAACGGAAATAACATCAGTTCAAC 58.552 33.333 0.00 0.00 39.15 3.18
165 166 6.627395 AACGGAAATAACATCAGTTCAACA 57.373 33.333 0.00 0.00 39.15 3.33
166 167 6.817765 ACGGAAATAACATCAGTTCAACAT 57.182 33.333 0.00 0.00 39.15 2.71
167 168 6.611381 ACGGAAATAACATCAGTTCAACATG 58.389 36.000 0.00 0.00 39.15 3.21
168 169 6.429692 ACGGAAATAACATCAGTTCAACATGA 59.570 34.615 0.00 0.00 39.15 3.07
169 170 6.742718 CGGAAATAACATCAGTTCAACATGAC 59.257 38.462 0.00 0.00 39.15 3.06
170 171 7.029563 GGAAATAACATCAGTTCAACATGACC 58.970 38.462 0.00 0.00 39.15 4.02
171 172 7.309133 GGAAATAACATCAGTTCAACATGACCA 60.309 37.037 0.00 0.00 39.15 4.02
172 173 4.836125 AACATCAGTTCAACATGACCAC 57.164 40.909 0.00 0.00 30.46 4.16
173 174 3.149196 ACATCAGTTCAACATGACCACC 58.851 45.455 0.00 0.00 0.00 4.61
174 175 2.270352 TCAGTTCAACATGACCACCC 57.730 50.000 0.00 0.00 0.00 4.61
175 176 1.492599 TCAGTTCAACATGACCACCCA 59.507 47.619 0.00 0.00 0.00 4.51
176 177 2.092158 TCAGTTCAACATGACCACCCAA 60.092 45.455 0.00 0.00 0.00 4.12
177 178 2.294233 CAGTTCAACATGACCACCCAAG 59.706 50.000 0.00 0.00 0.00 3.61
178 179 2.174639 AGTTCAACATGACCACCCAAGA 59.825 45.455 0.00 0.00 0.00 3.02
179 180 2.955660 GTTCAACATGACCACCCAAGAA 59.044 45.455 0.00 0.00 0.00 2.52
180 181 3.304911 TCAACATGACCACCCAAGAAA 57.695 42.857 0.00 0.00 0.00 2.52
181 182 2.955660 TCAACATGACCACCCAAGAAAC 59.044 45.455 0.00 0.00 0.00 2.78
182 183 2.958355 CAACATGACCACCCAAGAAACT 59.042 45.455 0.00 0.00 0.00 2.66
183 184 3.312736 ACATGACCACCCAAGAAACTT 57.687 42.857 0.00 0.00 0.00 2.66
184 185 4.447138 ACATGACCACCCAAGAAACTTA 57.553 40.909 0.00 0.00 0.00 2.24
185 186 4.398319 ACATGACCACCCAAGAAACTTAG 58.602 43.478 0.00 0.00 0.00 2.18
186 187 4.104102 ACATGACCACCCAAGAAACTTAGA 59.896 41.667 0.00 0.00 0.00 2.10
187 188 4.781775 TGACCACCCAAGAAACTTAGAA 57.218 40.909 0.00 0.00 0.00 2.10
188 189 5.118729 TGACCACCCAAGAAACTTAGAAA 57.881 39.130 0.00 0.00 0.00 2.52
189 190 5.130350 TGACCACCCAAGAAACTTAGAAAG 58.870 41.667 0.00 0.00 0.00 2.62
190 191 4.470602 ACCACCCAAGAAACTTAGAAAGG 58.529 43.478 0.00 0.00 0.00 3.11
191 192 3.826729 CCACCCAAGAAACTTAGAAAGGG 59.173 47.826 0.00 0.00 40.88 3.95
192 193 3.826729 CACCCAAGAAACTTAGAAAGGGG 59.173 47.826 0.00 0.00 39.38 4.79
193 194 3.725267 ACCCAAGAAACTTAGAAAGGGGA 59.275 43.478 0.00 0.00 39.38 4.81
194 195 4.169264 ACCCAAGAAACTTAGAAAGGGGAA 59.831 41.667 0.00 0.00 39.38 3.97
195 196 4.767409 CCCAAGAAACTTAGAAAGGGGAAG 59.233 45.833 0.00 0.00 34.97 3.46
196 197 4.218635 CCAAGAAACTTAGAAAGGGGAAGC 59.781 45.833 0.00 0.00 0.00 3.86
197 198 3.676093 AGAAACTTAGAAAGGGGAAGCG 58.324 45.455 0.00 0.00 0.00 4.68
198 199 2.491675 AACTTAGAAAGGGGAAGCGG 57.508 50.000 0.00 0.00 0.00 5.52
199 200 0.618981 ACTTAGAAAGGGGAAGCGGG 59.381 55.000 0.00 0.00 0.00 6.13
200 201 0.748367 CTTAGAAAGGGGAAGCGGGC 60.748 60.000 0.00 0.00 0.00 6.13
201 202 1.205460 TTAGAAAGGGGAAGCGGGCT 61.205 55.000 0.00 0.00 0.00 5.19
202 203 1.623542 TAGAAAGGGGAAGCGGGCTC 61.624 60.000 0.00 0.00 0.00 4.70
203 204 3.256960 AAAGGGGAAGCGGGCTCA 61.257 61.111 0.00 0.00 0.00 4.26
204 205 2.764637 GAAAGGGGAAGCGGGCTCAA 62.765 60.000 0.00 0.00 0.00 3.02
205 206 2.366153 AAAGGGGAAGCGGGCTCAAA 62.366 55.000 0.00 0.00 0.00 2.69
206 207 2.751837 GGGGAAGCGGGCTCAAAG 60.752 66.667 0.00 0.00 0.00 2.77
207 208 3.443925 GGGAAGCGGGCTCAAAGC 61.444 66.667 0.00 0.00 41.46 3.51
208 209 2.672996 GGAAGCGGGCTCAAAGCA 60.673 61.111 0.86 0.00 44.75 3.91
209 210 2.048603 GGAAGCGGGCTCAAAGCAT 61.049 57.895 0.86 0.00 44.75 3.79
210 211 1.431036 GAAGCGGGCTCAAAGCATC 59.569 57.895 0.86 0.00 44.75 3.91
211 212 2.315038 GAAGCGGGCTCAAAGCATCG 62.315 60.000 0.86 5.57 44.75 3.84
213 214 2.821366 CGGGCTCAAAGCATCGCT 60.821 61.111 0.86 0.00 44.75 4.93
214 215 2.796651 GGGCTCAAAGCATCGCTG 59.203 61.111 0.86 0.00 44.75 5.18
215 216 2.768492 GGGCTCAAAGCATCGCTGG 61.768 63.158 0.86 0.00 44.75 4.85
216 217 2.768492 GGCTCAAAGCATCGCTGGG 61.768 63.158 0.86 0.00 44.75 4.45
217 218 1.746615 GCTCAAAGCATCGCTGGGA 60.747 57.895 0.00 0.00 41.89 4.37
218 219 1.308069 GCTCAAAGCATCGCTGGGAA 61.308 55.000 0.00 0.00 41.89 3.97
219 220 1.167851 CTCAAAGCATCGCTGGGAAA 58.832 50.000 0.00 0.00 39.62 3.13
220 221 0.881118 TCAAAGCATCGCTGGGAAAC 59.119 50.000 0.00 0.00 39.62 2.78
233 234 3.930400 GGAAACCCACGACAAACAC 57.070 52.632 0.00 0.00 0.00 3.32
234 235 0.382873 GGAAACCCACGACAAACACC 59.617 55.000 0.00 0.00 0.00 4.16
235 236 0.382873 GAAACCCACGACAAACACCC 59.617 55.000 0.00 0.00 0.00 4.61
236 237 1.378124 AAACCCACGACAAACACCCG 61.378 55.000 0.00 0.00 0.00 5.28
237 238 2.203098 CCCACGACAAACACCCGT 60.203 61.111 0.00 0.00 36.95 5.28
238 239 2.248835 CCCACGACAAACACCCGTC 61.249 63.158 0.00 0.00 33.96 4.79
239 240 1.521906 CCACGACAAACACCCGTCA 60.522 57.895 0.00 0.00 33.96 4.35
240 241 0.882927 CCACGACAAACACCCGTCAT 60.883 55.000 0.00 0.00 33.96 3.06
241 242 0.511221 CACGACAAACACCCGTCATC 59.489 55.000 0.00 0.00 33.96 2.92
242 243 0.601841 ACGACAAACACCCGTCATCC 60.602 55.000 0.00 0.00 32.24 3.51
243 244 1.623081 CGACAAACACCCGTCATCCG 61.623 60.000 0.00 0.00 32.24 4.18
252 253 4.521075 CGTCATCCGGCAGTTCAT 57.479 55.556 0.00 0.00 0.00 2.57
253 254 2.301505 CGTCATCCGGCAGTTCATC 58.698 57.895 0.00 0.00 0.00 2.92
254 255 0.460109 CGTCATCCGGCAGTTCATCA 60.460 55.000 0.00 0.00 0.00 3.07
255 256 1.807755 CGTCATCCGGCAGTTCATCAT 60.808 52.381 0.00 0.00 0.00 2.45
256 257 1.600957 GTCATCCGGCAGTTCATCATG 59.399 52.381 0.00 0.00 0.00 3.07
257 258 0.949397 CATCCGGCAGTTCATCATGG 59.051 55.000 0.00 0.00 0.00 3.66
258 259 0.179009 ATCCGGCAGTTCATCATGGG 60.179 55.000 0.00 0.00 0.00 4.00
259 260 1.825191 CCGGCAGTTCATCATGGGG 60.825 63.158 0.00 0.00 0.00 4.96
260 261 2.484062 CGGCAGTTCATCATGGGGC 61.484 63.158 0.00 0.00 0.00 5.80
261 262 2.484062 GGCAGTTCATCATGGGGCG 61.484 63.158 0.00 0.00 0.00 6.13
262 263 1.451927 GCAGTTCATCATGGGGCGA 60.452 57.895 0.00 0.00 0.00 5.54
263 264 1.031571 GCAGTTCATCATGGGGCGAA 61.032 55.000 0.00 0.00 0.00 4.70
264 265 1.462616 CAGTTCATCATGGGGCGAAA 58.537 50.000 0.00 0.00 0.00 3.46
265 266 1.818060 CAGTTCATCATGGGGCGAAAA 59.182 47.619 0.00 0.00 0.00 2.29
266 267 1.818674 AGTTCATCATGGGGCGAAAAC 59.181 47.619 0.00 0.00 0.00 2.43
267 268 1.135112 GTTCATCATGGGGCGAAAACC 60.135 52.381 0.00 0.00 0.00 3.27
275 276 2.975799 GGCGAAAACCCAGCGACA 60.976 61.111 0.00 0.00 32.27 4.35
276 277 2.251371 GCGAAAACCCAGCGACAC 59.749 61.111 0.00 0.00 0.00 3.67
277 278 2.943653 CGAAAACCCAGCGACACC 59.056 61.111 0.00 0.00 0.00 4.16
278 279 1.890041 CGAAAACCCAGCGACACCA 60.890 57.895 0.00 0.00 0.00 4.17
279 280 1.440938 CGAAAACCCAGCGACACCAA 61.441 55.000 0.00 0.00 0.00 3.67
280 281 0.741915 GAAAACCCAGCGACACCAAA 59.258 50.000 0.00 0.00 0.00 3.28
281 282 0.744281 AAAACCCAGCGACACCAAAG 59.256 50.000 0.00 0.00 0.00 2.77
282 283 1.734388 AAACCCAGCGACACCAAAGC 61.734 55.000 0.00 0.00 0.00 3.51
283 284 2.594303 CCCAGCGACACCAAAGCA 60.594 61.111 0.00 0.00 0.00 3.91
284 285 1.973281 CCCAGCGACACCAAAGCAT 60.973 57.895 0.00 0.00 0.00 3.79
285 286 1.503542 CCAGCGACACCAAAGCATC 59.496 57.895 0.00 0.00 0.00 3.91
286 287 0.957395 CCAGCGACACCAAAGCATCT 60.957 55.000 0.00 0.00 0.00 2.90
287 288 1.675714 CCAGCGACACCAAAGCATCTA 60.676 52.381 0.00 0.00 0.00 1.98
288 289 1.394917 CAGCGACACCAAAGCATCTAC 59.605 52.381 0.00 0.00 0.00 2.59
289 290 0.727398 GCGACACCAAAGCATCTACC 59.273 55.000 0.00 0.00 0.00 3.18
290 291 1.943968 GCGACACCAAAGCATCTACCA 60.944 52.381 0.00 0.00 0.00 3.25
291 292 2.422597 CGACACCAAAGCATCTACCAA 58.577 47.619 0.00 0.00 0.00 3.67
292 293 2.159627 CGACACCAAAGCATCTACCAAC 59.840 50.000 0.00 0.00 0.00 3.77
293 294 2.488153 GACACCAAAGCATCTACCAACC 59.512 50.000 0.00 0.00 0.00 3.77
294 295 1.818674 CACCAAAGCATCTACCAACCC 59.181 52.381 0.00 0.00 0.00 4.11
295 296 1.427368 ACCAAAGCATCTACCAACCCA 59.573 47.619 0.00 0.00 0.00 4.51
296 297 2.094675 CCAAAGCATCTACCAACCCAG 58.905 52.381 0.00 0.00 0.00 4.45
297 298 1.474077 CAAAGCATCTACCAACCCAGC 59.526 52.381 0.00 0.00 0.00 4.85
298 299 0.392998 AAGCATCTACCAACCCAGCG 60.393 55.000 0.00 0.00 0.00 5.18
299 300 1.220749 GCATCTACCAACCCAGCGA 59.779 57.895 0.00 0.00 0.00 4.93
300 301 1.090052 GCATCTACCAACCCAGCGAC 61.090 60.000 0.00 0.00 0.00 5.19
301 302 0.249120 CATCTACCAACCCAGCGACA 59.751 55.000 0.00 0.00 0.00 4.35
302 303 0.249398 ATCTACCAACCCAGCGACAC 59.751 55.000 0.00 0.00 0.00 3.67
303 304 1.375523 CTACCAACCCAGCGACACC 60.376 63.158 0.00 0.00 0.00 4.16
304 305 2.107041 CTACCAACCCAGCGACACCA 62.107 60.000 0.00 0.00 0.00 4.17
305 306 1.697082 TACCAACCCAGCGACACCAA 61.697 55.000 0.00 0.00 0.00 3.67
376 377 6.823689 ACGAAACAGGATAGCATAATGAGTTT 59.176 34.615 0.00 0.00 0.00 2.66
499 510 6.000840 TCATGTTGTTATACTGAGCAAACCA 58.999 36.000 0.00 0.00 0.00 3.67
765 776 2.813754 TCTAATTGCTTGCTTGACGCTT 59.186 40.909 0.00 0.00 40.11 4.68
776 787 0.516877 TTGACGCTTGATTTGCCTCG 59.483 50.000 0.00 0.00 0.00 4.63
777 788 1.298157 TGACGCTTGATTTGCCTCGG 61.298 55.000 0.00 0.00 0.00 4.63
803 819 1.000163 CACGGCTCAACTGTACTCTGT 60.000 52.381 0.00 0.00 35.54 3.41
854 876 6.405278 ACACCTTTTCCCTGTAAAATTGAG 57.595 37.500 0.00 0.00 0.00 3.02
856 878 5.304357 CACCTTTTCCCTGTAAAATTGAGGT 59.696 40.000 0.00 0.00 0.00 3.85
857 879 6.492087 CACCTTTTCCCTGTAAAATTGAGGTA 59.508 38.462 0.00 0.00 27.98 3.08
860 882 8.593679 CCTTTTCCCTGTAAAATTGAGGTATTT 58.406 33.333 0.00 0.00 0.00 1.40
934 956 2.203070 CCCAGCCCTCGATTTCCG 60.203 66.667 0.00 0.00 40.25 4.30
1029 1051 0.698818 CTCTTGCCCCTTACCCAACT 59.301 55.000 0.00 0.00 0.00 3.16
1209 1231 3.350912 CAAGATGTTAACGGCATAACGC 58.649 45.455 0.26 0.00 38.37 4.84
1318 1359 6.365970 ACAGAATAAGCCCGAGATATCAAT 57.634 37.500 5.32 0.00 0.00 2.57
1322 1363 8.660373 CAGAATAAGCCCGAGATATCAATTAAC 58.340 37.037 5.32 0.00 0.00 2.01
1405 1446 1.055849 TTGGTAGGTGAGCTTCAGCA 58.944 50.000 14.76 0.00 46.52 4.41
1428 1469 6.534934 CAGCTGAAATTTCGTAACTAAGGTC 58.465 40.000 8.42 0.00 0.00 3.85
1540 1581 2.935191 TGCGCAGTTTGCAGTACG 59.065 55.556 5.66 0.00 45.36 3.67
1594 1635 7.220875 CACATCAATCTCATTTTGCTCATCAAG 59.779 37.037 0.00 0.00 35.84 3.02
1694 1735 4.032217 GTGTGCATTCTAATCGACTGTGAG 59.968 45.833 0.00 0.00 0.00 3.51
1898 1939 2.973945 AGGTACATCGACCAAAGCTTC 58.026 47.619 0.00 0.00 42.47 3.86
1899 1940 2.567615 AGGTACATCGACCAAAGCTTCT 59.432 45.455 0.00 0.00 42.47 2.85
1900 1941 2.930682 GGTACATCGACCAAAGCTTCTC 59.069 50.000 0.00 0.00 39.51 2.87
1901 1942 3.368531 GGTACATCGACCAAAGCTTCTCT 60.369 47.826 0.00 0.00 39.51 3.10
1902 1943 2.966050 ACATCGACCAAAGCTTCTCTC 58.034 47.619 0.00 0.00 0.00 3.20
1903 1944 2.564947 ACATCGACCAAAGCTTCTCTCT 59.435 45.455 0.00 0.00 0.00 3.10
1904 1945 3.186119 CATCGACCAAAGCTTCTCTCTC 58.814 50.000 0.00 0.00 0.00 3.20
1905 1946 2.520069 TCGACCAAAGCTTCTCTCTCT 58.480 47.619 0.00 0.00 0.00 3.10
1906 1947 2.490115 TCGACCAAAGCTTCTCTCTCTC 59.510 50.000 0.00 0.00 0.00 3.20
1907 1948 2.491693 CGACCAAAGCTTCTCTCTCTCT 59.508 50.000 0.00 0.00 0.00 3.10
1908 1949 3.427503 CGACCAAAGCTTCTCTCTCTCTC 60.428 52.174 0.00 0.00 0.00 3.20
1909 1950 3.763897 GACCAAAGCTTCTCTCTCTCTCT 59.236 47.826 0.00 0.00 0.00 3.10
1910 1951 3.763897 ACCAAAGCTTCTCTCTCTCTCTC 59.236 47.826 0.00 0.00 0.00 3.20
1911 1952 4.019174 CCAAAGCTTCTCTCTCTCTCTCT 58.981 47.826 0.00 0.00 0.00 3.10
1912 1953 4.096984 CCAAAGCTTCTCTCTCTCTCTCTC 59.903 50.000 0.00 0.00 0.00 3.20
1913 1954 4.851639 AAGCTTCTCTCTCTCTCTCTCT 57.148 45.455 0.00 0.00 0.00 3.10
1914 1955 4.414337 AGCTTCTCTCTCTCTCTCTCTC 57.586 50.000 0.00 0.00 0.00 3.20
1915 1956 4.036518 AGCTTCTCTCTCTCTCTCTCTCT 58.963 47.826 0.00 0.00 0.00 3.10
1916 1957 4.100808 AGCTTCTCTCTCTCTCTCTCTCTC 59.899 50.000 0.00 0.00 0.00 3.20
1917 1958 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
1918 1959 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
1919 1960 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1920 1961 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1924 1965 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1982 2025 3.708631 TGCTGGTTTTGATTCCCTTTTCA 59.291 39.130 0.00 0.00 0.00 2.69
2037 2080 2.235650 TCCTCCTTCTGAGCAGAATGTG 59.764 50.000 12.84 10.76 45.40 3.21
2116 2159 2.159170 GCTTATCCTGAAGTCGCACTCT 60.159 50.000 0.00 0.00 0.00 3.24
2208 2251 5.163652 CCCGGATCTACCAAAAAGTTTGATC 60.164 44.000 0.73 0.00 38.90 2.92
2466 2597 2.151202 CATGTAAACTGCGGGAGTTGT 58.849 47.619 15.83 8.60 44.68 3.32
2548 2679 3.074412 GTCACATCAGTTGGGGTAAGTG 58.926 50.000 0.00 0.00 40.41 3.16
2566 2697 6.595716 GGTAAGTGTTCATTATCAGAGCTGTT 59.404 38.462 0.00 0.00 0.00 3.16
2618 2749 7.150640 GCTCTTTTTCTGGATTTTTCACATCT 58.849 34.615 0.00 0.00 0.00 2.90
2641 2772 7.939782 TCTTTTAATTGTCATTGCTGTTGAGA 58.060 30.769 0.00 0.00 0.00 3.27
2657 2788 5.436175 TGTTGAGAGACCTGAATTTCACAA 58.564 37.500 0.00 0.00 0.00 3.33
2672 2803 6.723298 ATTTCACAACAACCATACCTGAAA 57.277 33.333 0.00 0.00 32.36 2.69
2673 2804 6.723298 TTTCACAACAACCATACCTGAAAT 57.277 33.333 0.00 0.00 0.00 2.17
2674 2805 5.703978 TCACAACAACCATACCTGAAATG 57.296 39.130 0.00 0.00 0.00 2.32
2675 2806 5.136828 TCACAACAACCATACCTGAAATGT 58.863 37.500 0.00 0.00 0.00 2.71
2676 2807 5.009510 TCACAACAACCATACCTGAAATGTG 59.990 40.000 0.00 0.00 36.64 3.21
2678 2809 5.362430 ACAACAACCATACCTGAAATGTGTT 59.638 36.000 0.00 0.00 28.87 3.32
2679 2810 6.547880 ACAACAACCATACCTGAAATGTGTTA 59.452 34.615 0.00 0.00 28.29 2.41
2680 2811 6.569179 ACAACCATACCTGAAATGTGTTAC 57.431 37.500 0.00 0.00 0.00 2.50
2682 2813 6.775629 ACAACCATACCTGAAATGTGTTACTT 59.224 34.615 0.00 0.00 0.00 2.24
2683 2814 7.040686 ACAACCATACCTGAAATGTGTTACTTC 60.041 37.037 0.00 0.00 0.00 3.01
2717 2848 0.745486 CATCATCGGGTGCAGAGCAA 60.745 55.000 0.00 0.00 41.47 3.91
2736 2867 1.780503 AAAGCCCAGCAACTGAAGTT 58.219 45.000 0.00 0.00 39.12 2.66
2739 2870 1.133668 AGCCCAGCAACTGAAGTTCTT 60.134 47.619 4.17 0.00 35.83 2.52
2767 2898 2.521958 TACTGAAGGCAGCTTCCCGC 62.522 60.000 0.00 0.00 46.26 6.13
2841 2972 0.327964 CCTCCCCTCTCCATTTCCCT 60.328 60.000 0.00 0.00 0.00 4.20
2953 3085 5.185828 TGGATCAGACAGATATATGAACCCG 59.814 44.000 3.93 0.00 37.00 5.28
2971 3103 3.513515 ACCCGCCATGTTTATGTTCAATT 59.486 39.130 0.00 0.00 32.21 2.32
2972 3104 4.707448 ACCCGCCATGTTTATGTTCAATTA 59.293 37.500 0.00 0.00 32.21 1.40
2975 3107 7.232534 ACCCGCCATGTTTATGTTCAATTATAT 59.767 33.333 0.00 0.00 32.21 0.86
2977 3109 7.754924 CCGCCATGTTTATGTTCAATTATATCC 59.245 37.037 0.00 0.00 32.21 2.59
3100 3241 6.662414 ATATTATTACGGCCAACATGATCG 57.338 37.500 2.24 0.00 0.00 3.69
3102 3243 1.364721 TTACGGCCAACATGATCGTG 58.635 50.000 13.53 13.53 35.60 4.35
3103 3244 0.533032 TACGGCCAACATGATCGTGA 59.467 50.000 21.75 0.00 35.60 4.35
3104 3245 0.321210 ACGGCCAACATGATCGTGAA 60.321 50.000 21.75 0.00 32.60 3.18
3105 3246 0.801872 CGGCCAACATGATCGTGAAA 59.198 50.000 21.75 0.00 0.00 2.69
3106 3247 1.202065 CGGCCAACATGATCGTGAAAG 60.202 52.381 21.75 9.69 0.00 2.62
3107 3248 1.812571 GGCCAACATGATCGTGAAAGT 59.187 47.619 21.75 0.00 0.00 2.66
3108 3249 2.228822 GGCCAACATGATCGTGAAAGTT 59.771 45.455 21.75 2.33 0.00 2.66
3109 3250 3.492313 GCCAACATGATCGTGAAAGTTC 58.508 45.455 21.75 2.10 0.00 3.01
3110 3251 3.189287 GCCAACATGATCGTGAAAGTTCT 59.811 43.478 21.75 0.00 0.00 3.01
3111 3252 4.670221 GCCAACATGATCGTGAAAGTTCTC 60.670 45.833 21.75 0.00 0.00 2.87
3112 3253 4.142816 CCAACATGATCGTGAAAGTTCTCC 60.143 45.833 21.75 0.00 0.00 3.71
3113 3254 3.600388 ACATGATCGTGAAAGTTCTCCC 58.400 45.455 21.75 0.00 0.00 4.30
3114 3255 2.762535 TGATCGTGAAAGTTCTCCCC 57.237 50.000 0.00 0.00 0.00 4.81
3115 3256 1.974957 TGATCGTGAAAGTTCTCCCCA 59.025 47.619 0.00 0.00 0.00 4.96
3116 3257 2.370519 TGATCGTGAAAGTTCTCCCCAA 59.629 45.455 0.00 0.00 0.00 4.12
3117 3258 3.181449 TGATCGTGAAAGTTCTCCCCAAA 60.181 43.478 0.00 0.00 0.00 3.28
3118 3259 3.284793 TCGTGAAAGTTCTCCCCAAAA 57.715 42.857 0.00 0.00 0.00 2.44
3119 3260 3.622630 TCGTGAAAGTTCTCCCCAAAAA 58.377 40.909 0.00 0.00 0.00 1.94
3154 3296 8.628630 TCACTAACACATACAAATCCAAATGA 57.371 30.769 0.00 0.00 0.00 2.57
3182 3324 0.036164 TAGGGTGCGCAAACACATCT 59.964 50.000 14.00 3.92 42.55 2.90
3183 3325 0.823356 AGGGTGCGCAAACACATCTT 60.823 50.000 14.00 0.00 42.55 2.40
3184 3326 0.664166 GGGTGCGCAAACACATCTTG 60.664 55.000 14.00 0.00 42.55 3.02
3185 3327 0.310543 GGTGCGCAAACACATCTTGA 59.689 50.000 14.00 0.00 42.55 3.02
3186 3328 1.268999 GGTGCGCAAACACATCTTGAA 60.269 47.619 14.00 0.00 42.55 2.69
3187 3329 2.607771 GGTGCGCAAACACATCTTGAAT 60.608 45.455 14.00 0.00 42.55 2.57
3189 3331 1.987770 GCGCAAACACATCTTGAATGG 59.012 47.619 0.30 0.00 0.00 3.16
3190 3332 2.607771 GCGCAAACACATCTTGAATGGT 60.608 45.455 0.30 0.00 0.00 3.55
3199 3351 2.479566 TCTTGAATGGTGACTCTGGC 57.520 50.000 0.00 0.00 0.00 4.85
3201 3353 0.955428 TTGAATGGTGACTCTGGCGC 60.955 55.000 0.00 0.00 0.00 6.53
3220 3372 2.161012 CGCAGAGTTGATGTTGATTGCT 59.839 45.455 0.00 0.00 0.00 3.91
3222 3374 4.493708 CGCAGAGTTGATGTTGATTGCTAG 60.494 45.833 0.00 0.00 0.00 3.42
3238 3392 0.625849 CTAGGGCACAGGATTGGGTT 59.374 55.000 0.00 0.00 0.00 4.11
3306 3460 4.166888 GCATCTCCCAGCCAGCGA 62.167 66.667 0.00 0.00 0.00 4.93
3307 3461 2.108566 CATCTCCCAGCCAGCGAG 59.891 66.667 0.00 0.00 0.00 5.03
3374 3528 1.346068 GCCTGAGAAGGACTGTCAGTT 59.654 52.381 7.00 2.21 0.00 3.16
3455 3615 5.316167 AGAGAACACAATGATGTAAAGGCA 58.684 37.500 0.00 0.00 37.82 4.75
3474 3634 1.391933 ATAGATGGTGCTCGGTCGCA 61.392 55.000 0.00 0.00 37.62 5.10
3475 3635 2.004808 TAGATGGTGCTCGGTCGCAG 62.005 60.000 0.00 0.00 41.21 5.18
3503 3663 0.911769 AATGGTGCCTGCTGCTAGTA 59.088 50.000 0.00 0.00 42.00 1.82
3623 4145 1.922447 TGCAGGATTGGTGGGTATCTT 59.078 47.619 0.00 0.00 0.00 2.40
3638 4161 6.702282 GTGGGTATCTTAGCTGTTGTTATCTC 59.298 42.308 0.00 0.00 0.00 2.75
3639 4162 6.382859 TGGGTATCTTAGCTGTTGTTATCTCA 59.617 38.462 0.00 0.00 0.00 3.27
3663 4186 1.821759 CGGGACTTTGTGTGCACCA 60.822 57.895 15.69 9.21 38.87 4.17
3677 4200 1.601477 CACCAGGTGCACTGCATCA 60.601 57.895 17.98 0.00 42.90 3.07
3684 4207 3.940852 CAGGTGCACTGCATCAGTTTATA 59.059 43.478 17.98 0.00 42.59 0.98
3685 4208 4.034858 CAGGTGCACTGCATCAGTTTATAG 59.965 45.833 17.98 0.00 42.59 1.31
3686 4209 3.941483 GGTGCACTGCATCAGTTTATAGT 59.059 43.478 17.98 0.00 42.59 2.12
3692 4215 8.020819 TGCACTGCATCAGTTTATAGTAAAAAC 58.979 33.333 0.00 0.00 42.59 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.993821 TTATCTCTTCGAAGATCACATGTTC 57.006 36.000 27.19 0.00 37.24 3.18
10 11 7.819415 TGTTTATCTCTTCGAAGATCACATGTT 59.181 33.333 27.19 12.25 37.24 2.71
11 12 7.323420 TGTTTATCTCTTCGAAGATCACATGT 58.677 34.615 27.19 11.09 37.24 3.21
12 13 7.761651 TGTTTATCTCTTCGAAGATCACATG 57.238 36.000 27.19 14.88 37.24 3.21
13 14 7.984050 ACATGTTTATCTCTTCGAAGATCACAT 59.016 33.333 27.19 23.15 38.81 3.21
14 15 7.323420 ACATGTTTATCTCTTCGAAGATCACA 58.677 34.615 27.19 22.19 37.24 3.58
15 16 7.763172 ACATGTTTATCTCTTCGAAGATCAC 57.237 36.000 27.19 18.13 37.24 3.06
16 17 8.777865 AAACATGTTTATCTCTTCGAAGATCA 57.222 30.769 27.19 17.33 37.24 2.92
19 20 9.098355 CCATAAACATGTTTATCTCTTCGAAGA 57.902 33.333 31.71 25.57 42.11 2.87
20 21 8.883731 ACCATAAACATGTTTATCTCTTCGAAG 58.116 33.333 31.71 19.35 42.11 3.79
21 22 8.786826 ACCATAAACATGTTTATCTCTTCGAA 57.213 30.769 31.71 12.05 42.11 3.71
22 23 9.878667 TTACCATAAACATGTTTATCTCTTCGA 57.121 29.630 31.71 16.27 42.11 3.71
32 33 9.777297 AGCAAGAAATTTACCATAAACATGTTT 57.223 25.926 25.99 25.99 36.63 2.83
33 34 9.777297 AAGCAAGAAATTTACCATAAACATGTT 57.223 25.926 4.92 4.92 0.00 2.71
51 52 9.855021 GTGGCTTTAGATTAAAATAAGCAAGAA 57.145 29.630 0.00 0.00 42.17 2.52
52 53 9.019656 TGTGGCTTTAGATTAAAATAAGCAAGA 57.980 29.630 0.00 0.00 42.17 3.02
53 54 9.807649 ATGTGGCTTTAGATTAAAATAAGCAAG 57.192 29.630 0.00 0.00 42.17 4.01
54 55 9.585099 CATGTGGCTTTAGATTAAAATAAGCAA 57.415 29.630 0.00 0.00 42.17 3.91
55 56 8.748412 ACATGTGGCTTTAGATTAAAATAAGCA 58.252 29.630 0.00 0.00 42.17 3.91
59 60 9.402320 TGCTACATGTGGCTTTAGATTAAAATA 57.598 29.630 30.80 6.39 37.97 1.40
60 61 8.190784 GTGCTACATGTGGCTTTAGATTAAAAT 58.809 33.333 30.80 0.00 37.97 1.82
61 62 7.175816 TGTGCTACATGTGGCTTTAGATTAAAA 59.824 33.333 30.80 7.01 37.97 1.52
62 63 6.657117 TGTGCTACATGTGGCTTTAGATTAAA 59.343 34.615 30.80 7.51 37.97 1.52
63 64 6.176896 TGTGCTACATGTGGCTTTAGATTAA 58.823 36.000 30.80 8.23 37.97 1.40
64 65 5.739959 TGTGCTACATGTGGCTTTAGATTA 58.260 37.500 30.80 8.93 37.97 1.75
65 66 4.588899 TGTGCTACATGTGGCTTTAGATT 58.411 39.130 30.80 0.00 37.97 2.40
66 67 4.220693 TGTGCTACATGTGGCTTTAGAT 57.779 40.909 30.80 0.00 37.97 1.98
67 68 3.694043 TGTGCTACATGTGGCTTTAGA 57.306 42.857 30.80 11.09 37.97 2.10
68 69 4.970662 ATTGTGCTACATGTGGCTTTAG 57.029 40.909 30.80 10.89 37.97 1.85
69 70 4.331443 CGTATTGTGCTACATGTGGCTTTA 59.669 41.667 30.80 17.62 37.97 1.85
70 71 3.126858 CGTATTGTGCTACATGTGGCTTT 59.873 43.478 30.80 16.74 37.97 3.51
71 72 2.677836 CGTATTGTGCTACATGTGGCTT 59.322 45.455 30.80 17.05 37.97 4.35
72 73 2.279741 CGTATTGTGCTACATGTGGCT 58.720 47.619 30.80 15.89 37.97 4.75
73 74 2.006888 ACGTATTGTGCTACATGTGGC 58.993 47.619 25.76 25.76 37.60 5.01
74 75 5.788055 TTTACGTATTGTGCTACATGTGG 57.212 39.130 9.11 6.75 0.00 4.17
75 76 9.929722 ATTTATTTACGTATTGTGCTACATGTG 57.070 29.630 9.11 0.00 0.00 3.21
115 116 5.201243 AGAGTAATGAAAAGGGGTAATGCC 58.799 41.667 0.00 0.00 0.00 4.40
116 117 5.885912 TGAGAGTAATGAAAAGGGGTAATGC 59.114 40.000 0.00 0.00 0.00 3.56
117 118 9.627123 TTATGAGAGTAATGAAAAGGGGTAATG 57.373 33.333 0.00 0.00 0.00 1.90
118 119 9.628500 GTTATGAGAGTAATGAAAAGGGGTAAT 57.372 33.333 0.00 0.00 0.00 1.89
119 120 7.767198 CGTTATGAGAGTAATGAAAAGGGGTAA 59.233 37.037 0.00 0.00 0.00 2.85
120 121 7.270047 CGTTATGAGAGTAATGAAAAGGGGTA 58.730 38.462 0.00 0.00 0.00 3.69
121 122 6.113411 CGTTATGAGAGTAATGAAAAGGGGT 58.887 40.000 0.00 0.00 0.00 4.95
122 123 5.527582 CCGTTATGAGAGTAATGAAAAGGGG 59.472 44.000 0.00 0.00 0.00 4.79
123 124 6.346096 TCCGTTATGAGAGTAATGAAAAGGG 58.654 40.000 0.00 0.00 0.00 3.95
124 125 7.843490 TTCCGTTATGAGAGTAATGAAAAGG 57.157 36.000 0.00 0.00 0.00 3.11
128 129 9.878667 TGTTATTTCCGTTATGAGAGTAATGAA 57.121 29.630 0.00 0.00 0.00 2.57
132 133 9.529325 CTGATGTTATTTCCGTTATGAGAGTAA 57.471 33.333 0.00 0.00 0.00 2.24
133 134 8.692710 ACTGATGTTATTTCCGTTATGAGAGTA 58.307 33.333 0.00 0.00 0.00 2.59
134 135 7.556844 ACTGATGTTATTTCCGTTATGAGAGT 58.443 34.615 0.00 0.00 0.00 3.24
135 136 8.425577 AACTGATGTTATTTCCGTTATGAGAG 57.574 34.615 0.00 0.00 34.15 3.20
136 137 8.038351 TGAACTGATGTTATTTCCGTTATGAGA 58.962 33.333 0.00 0.00 36.39 3.27
137 138 8.196802 TGAACTGATGTTATTTCCGTTATGAG 57.803 34.615 0.00 0.00 36.39 2.90
138 139 8.447833 GTTGAACTGATGTTATTTCCGTTATGA 58.552 33.333 0.00 0.00 36.39 2.15
139 140 8.233868 TGTTGAACTGATGTTATTTCCGTTATG 58.766 33.333 0.00 0.00 36.39 1.90
140 141 8.330466 TGTTGAACTGATGTTATTTCCGTTAT 57.670 30.769 0.00 0.00 36.39 1.89
141 142 7.731882 TGTTGAACTGATGTTATTTCCGTTA 57.268 32.000 0.00 0.00 36.39 3.18
142 143 6.627395 TGTTGAACTGATGTTATTTCCGTT 57.373 33.333 0.00 0.00 36.39 4.44
143 144 6.429692 TCATGTTGAACTGATGTTATTTCCGT 59.570 34.615 0.00 0.00 36.39 4.69
144 145 6.742718 GTCATGTTGAACTGATGTTATTTCCG 59.257 38.462 0.00 0.00 36.39 4.30
145 146 7.029563 GGTCATGTTGAACTGATGTTATTTCC 58.970 38.462 0.00 0.00 36.39 3.13
146 147 7.538678 GTGGTCATGTTGAACTGATGTTATTTC 59.461 37.037 0.00 0.00 34.53 2.17
147 148 7.370383 GTGGTCATGTTGAACTGATGTTATTT 58.630 34.615 0.00 0.00 34.53 1.40
148 149 6.071952 GGTGGTCATGTTGAACTGATGTTATT 60.072 38.462 0.00 0.00 34.53 1.40
149 150 5.415701 GGTGGTCATGTTGAACTGATGTTAT 59.584 40.000 0.00 0.00 34.53 1.89
150 151 4.759693 GGTGGTCATGTTGAACTGATGTTA 59.240 41.667 0.00 0.00 34.53 2.41
151 152 3.569701 GGTGGTCATGTTGAACTGATGTT 59.430 43.478 0.00 0.00 34.53 2.71
152 153 3.149196 GGTGGTCATGTTGAACTGATGT 58.851 45.455 0.00 0.00 34.53 3.06
153 154 2.489329 GGGTGGTCATGTTGAACTGATG 59.511 50.000 0.00 0.00 34.53 3.07
154 155 2.108075 TGGGTGGTCATGTTGAACTGAT 59.892 45.455 0.00 0.00 34.53 2.90
155 156 1.492599 TGGGTGGTCATGTTGAACTGA 59.507 47.619 0.00 0.00 34.53 3.41
156 157 1.979855 TGGGTGGTCATGTTGAACTG 58.020 50.000 0.00 0.00 34.53 3.16
157 158 2.174639 TCTTGGGTGGTCATGTTGAACT 59.825 45.455 0.00 0.00 34.53 3.01
158 159 2.582052 TCTTGGGTGGTCATGTTGAAC 58.418 47.619 0.00 0.00 33.88 3.18
159 160 3.304911 TTCTTGGGTGGTCATGTTGAA 57.695 42.857 0.00 0.00 0.00 2.69
160 161 2.955660 GTTTCTTGGGTGGTCATGTTGA 59.044 45.455 0.00 0.00 0.00 3.18
161 162 2.958355 AGTTTCTTGGGTGGTCATGTTG 59.042 45.455 0.00 0.00 0.00 3.33
162 163 3.312736 AGTTTCTTGGGTGGTCATGTT 57.687 42.857 0.00 0.00 0.00 2.71
163 164 3.312736 AAGTTTCTTGGGTGGTCATGT 57.687 42.857 0.00 0.00 0.00 3.21
164 165 4.651778 TCTAAGTTTCTTGGGTGGTCATG 58.348 43.478 0.00 0.00 0.00 3.07
165 166 4.993705 TCTAAGTTTCTTGGGTGGTCAT 57.006 40.909 0.00 0.00 0.00 3.06
166 167 4.781775 TTCTAAGTTTCTTGGGTGGTCA 57.218 40.909 0.00 0.00 0.00 4.02
167 168 4.519350 CCTTTCTAAGTTTCTTGGGTGGTC 59.481 45.833 0.00 0.00 0.00 4.02
168 169 4.470602 CCTTTCTAAGTTTCTTGGGTGGT 58.529 43.478 0.00 0.00 0.00 4.16
169 170 3.826729 CCCTTTCTAAGTTTCTTGGGTGG 59.173 47.826 0.00 0.00 0.00 4.61
170 171 3.826729 CCCCTTTCTAAGTTTCTTGGGTG 59.173 47.826 0.00 0.00 0.00 4.61
171 172 3.725267 TCCCCTTTCTAAGTTTCTTGGGT 59.275 43.478 0.00 0.00 0.00 4.51
172 173 4.382386 TCCCCTTTCTAAGTTTCTTGGG 57.618 45.455 0.00 0.00 0.00 4.12
173 174 4.218635 GCTTCCCCTTTCTAAGTTTCTTGG 59.781 45.833 0.00 0.00 0.00 3.61
174 175 4.083271 CGCTTCCCCTTTCTAAGTTTCTTG 60.083 45.833 0.00 0.00 0.00 3.02
175 176 4.072839 CGCTTCCCCTTTCTAAGTTTCTT 58.927 43.478 0.00 0.00 0.00 2.52
176 177 3.559384 CCGCTTCCCCTTTCTAAGTTTCT 60.559 47.826 0.00 0.00 0.00 2.52
177 178 2.747989 CCGCTTCCCCTTTCTAAGTTTC 59.252 50.000 0.00 0.00 0.00 2.78
178 179 2.554564 CCCGCTTCCCCTTTCTAAGTTT 60.555 50.000 0.00 0.00 0.00 2.66
179 180 1.004394 CCCGCTTCCCCTTTCTAAGTT 59.996 52.381 0.00 0.00 0.00 2.66
180 181 0.618981 CCCGCTTCCCCTTTCTAAGT 59.381 55.000 0.00 0.00 0.00 2.24
181 182 0.748367 GCCCGCTTCCCCTTTCTAAG 60.748 60.000 0.00 0.00 0.00 2.18
182 183 1.205460 AGCCCGCTTCCCCTTTCTAA 61.205 55.000 0.00 0.00 0.00 2.10
183 184 1.615424 AGCCCGCTTCCCCTTTCTA 60.615 57.895 0.00 0.00 0.00 2.10
184 185 2.936032 AGCCCGCTTCCCCTTTCT 60.936 61.111 0.00 0.00 0.00 2.52
185 186 2.438614 GAGCCCGCTTCCCCTTTC 60.439 66.667 0.00 0.00 0.00 2.62
186 187 2.366153 TTTGAGCCCGCTTCCCCTTT 62.366 55.000 0.00 0.00 0.00 3.11
187 188 2.771328 CTTTGAGCCCGCTTCCCCTT 62.771 60.000 0.00 0.00 0.00 3.95
188 189 3.256960 TTTGAGCCCGCTTCCCCT 61.257 61.111 0.00 0.00 0.00 4.79
189 190 2.751837 CTTTGAGCCCGCTTCCCC 60.752 66.667 0.00 0.00 0.00 4.81
190 191 3.443925 GCTTTGAGCCCGCTTCCC 61.444 66.667 0.00 0.00 34.48 3.97
191 192 1.997928 GATGCTTTGAGCCCGCTTCC 61.998 60.000 0.00 0.00 41.51 3.46
192 193 1.431036 GATGCTTTGAGCCCGCTTC 59.569 57.895 0.00 0.00 41.51 3.86
193 194 2.401766 CGATGCTTTGAGCCCGCTT 61.402 57.895 0.00 0.00 41.51 4.68
194 195 2.821366 CGATGCTTTGAGCCCGCT 60.821 61.111 0.00 0.00 41.51 5.52
196 197 2.821366 AGCGATGCTTTGAGCCCG 60.821 61.111 0.00 2.94 41.51 6.13
197 198 2.768492 CCAGCGATGCTTTGAGCCC 61.768 63.158 0.00 0.00 41.51 5.19
198 199 2.768492 CCCAGCGATGCTTTGAGCC 61.768 63.158 0.00 0.00 41.51 4.70
199 200 1.308069 TTCCCAGCGATGCTTTGAGC 61.308 55.000 0.00 0.00 42.82 4.26
200 201 1.135575 GTTTCCCAGCGATGCTTTGAG 60.136 52.381 0.00 0.00 36.40 3.02
201 202 0.881118 GTTTCCCAGCGATGCTTTGA 59.119 50.000 0.00 0.00 36.40 2.69
202 203 0.109132 GGTTTCCCAGCGATGCTTTG 60.109 55.000 0.00 0.00 36.40 2.77
203 204 1.250840 GGGTTTCCCAGCGATGCTTT 61.251 55.000 0.00 0.00 44.65 3.51
204 205 1.678970 GGGTTTCCCAGCGATGCTT 60.679 57.895 0.00 0.00 44.65 3.91
205 206 2.044946 GGGTTTCCCAGCGATGCT 60.045 61.111 0.00 0.00 44.65 3.79
214 215 0.382873 GTGTTTGTCGTGGGTTTCCC 59.617 55.000 0.00 0.00 45.71 3.97
215 216 0.382873 GGTGTTTGTCGTGGGTTTCC 59.617 55.000 0.00 0.00 0.00 3.13
216 217 0.382873 GGGTGTTTGTCGTGGGTTTC 59.617 55.000 0.00 0.00 0.00 2.78
217 218 1.378124 CGGGTGTTTGTCGTGGGTTT 61.378 55.000 0.00 0.00 0.00 3.27
218 219 1.820481 CGGGTGTTTGTCGTGGGTT 60.820 57.895 0.00 0.00 0.00 4.11
219 220 2.203098 CGGGTGTTTGTCGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
220 221 2.203098 ACGGGTGTTTGTCGTGGG 60.203 61.111 0.00 0.00 35.70 4.61
221 222 0.882927 ATGACGGGTGTTTGTCGTGG 60.883 55.000 0.00 0.00 37.94 4.94
222 223 0.511221 GATGACGGGTGTTTGTCGTG 59.489 55.000 0.00 0.00 37.94 4.35
223 224 0.601841 GGATGACGGGTGTTTGTCGT 60.602 55.000 0.00 0.00 37.94 4.34
224 225 1.623081 CGGATGACGGGTGTTTGTCG 61.623 60.000 0.00 0.00 37.94 4.35
225 226 2.159181 CGGATGACGGGTGTTTGTC 58.841 57.895 0.00 0.00 39.42 3.18
226 227 4.371975 CGGATGACGGGTGTTTGT 57.628 55.556 0.00 0.00 39.42 2.83
235 236 0.460109 TGATGAACTGCCGGATGACG 60.460 55.000 5.05 0.00 43.80 4.35
236 237 1.600957 CATGATGAACTGCCGGATGAC 59.399 52.381 5.05 0.00 0.00 3.06
237 238 1.475571 CCATGATGAACTGCCGGATGA 60.476 52.381 5.05 0.00 0.00 2.92
238 239 0.949397 CCATGATGAACTGCCGGATG 59.051 55.000 5.05 0.00 0.00 3.51
239 240 0.179009 CCCATGATGAACTGCCGGAT 60.179 55.000 5.05 0.00 0.00 4.18
240 241 1.224315 CCCATGATGAACTGCCGGA 59.776 57.895 5.05 0.00 0.00 5.14
241 242 1.825191 CCCCATGATGAACTGCCGG 60.825 63.158 0.00 0.00 0.00 6.13
242 243 2.484062 GCCCCATGATGAACTGCCG 61.484 63.158 0.00 0.00 0.00 5.69
243 244 2.484062 CGCCCCATGATGAACTGCC 61.484 63.158 0.00 0.00 0.00 4.85
244 245 1.031571 TTCGCCCCATGATGAACTGC 61.032 55.000 0.00 0.00 0.00 4.40
245 246 1.462616 TTTCGCCCCATGATGAACTG 58.537 50.000 0.00 0.00 0.00 3.16
246 247 1.818674 GTTTTCGCCCCATGATGAACT 59.181 47.619 0.00 0.00 0.00 3.01
247 248 1.135112 GGTTTTCGCCCCATGATGAAC 60.135 52.381 0.00 0.00 0.00 3.18
248 249 1.181786 GGTTTTCGCCCCATGATGAA 58.818 50.000 0.00 0.00 0.00 2.57
249 250 0.682855 GGGTTTTCGCCCCATGATGA 60.683 55.000 0.00 0.00 42.89 2.92
250 251 1.815866 GGGTTTTCGCCCCATGATG 59.184 57.895 0.00 0.00 42.89 3.07
251 252 4.355151 GGGTTTTCGCCCCATGAT 57.645 55.556 0.00 0.00 42.89 2.45
258 259 2.975799 TGTCGCTGGGTTTTCGCC 60.976 61.111 0.00 0.00 0.00 5.54
259 260 2.251371 GTGTCGCTGGGTTTTCGC 59.749 61.111 0.00 0.00 0.00 4.70
260 261 1.440938 TTGGTGTCGCTGGGTTTTCG 61.441 55.000 0.00 0.00 0.00 3.46
261 262 0.741915 TTTGGTGTCGCTGGGTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
262 263 0.744281 CTTTGGTGTCGCTGGGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
263 264 1.734388 GCTTTGGTGTCGCTGGGTTT 61.734 55.000 0.00 0.00 0.00 3.27
264 265 2.193536 GCTTTGGTGTCGCTGGGTT 61.194 57.895 0.00 0.00 0.00 4.11
265 266 2.594592 GCTTTGGTGTCGCTGGGT 60.595 61.111 0.00 0.00 0.00 4.51
266 267 1.926511 GATGCTTTGGTGTCGCTGGG 61.927 60.000 0.00 0.00 0.00 4.45
267 268 0.957395 AGATGCTTTGGTGTCGCTGG 60.957 55.000 0.00 0.00 0.00 4.85
268 269 1.394917 GTAGATGCTTTGGTGTCGCTG 59.605 52.381 0.00 0.00 0.00 5.18
269 270 1.676014 GGTAGATGCTTTGGTGTCGCT 60.676 52.381 0.00 0.00 0.00 4.93
270 271 0.727398 GGTAGATGCTTTGGTGTCGC 59.273 55.000 0.00 0.00 0.00 5.19
271 272 2.093306 TGGTAGATGCTTTGGTGTCG 57.907 50.000 0.00 0.00 0.00 4.35
272 273 2.488153 GGTTGGTAGATGCTTTGGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
273 274 2.514803 GGTTGGTAGATGCTTTGGTGT 58.485 47.619 0.00 0.00 0.00 4.16
274 275 1.818674 GGGTTGGTAGATGCTTTGGTG 59.181 52.381 0.00 0.00 0.00 4.17
275 276 1.427368 TGGGTTGGTAGATGCTTTGGT 59.573 47.619 0.00 0.00 0.00 3.67
276 277 2.094675 CTGGGTTGGTAGATGCTTTGG 58.905 52.381 0.00 0.00 0.00 3.28
277 278 1.474077 GCTGGGTTGGTAGATGCTTTG 59.526 52.381 0.00 0.00 0.00 2.77
278 279 1.839424 GCTGGGTTGGTAGATGCTTT 58.161 50.000 0.00 0.00 0.00 3.51
279 280 0.392998 CGCTGGGTTGGTAGATGCTT 60.393 55.000 0.00 0.00 0.00 3.91
280 281 1.221840 CGCTGGGTTGGTAGATGCT 59.778 57.895 0.00 0.00 0.00 3.79
281 282 1.090052 GTCGCTGGGTTGGTAGATGC 61.090 60.000 0.00 0.00 0.00 3.91
282 283 0.249120 TGTCGCTGGGTTGGTAGATG 59.751 55.000 0.00 0.00 0.00 2.90
283 284 0.249398 GTGTCGCTGGGTTGGTAGAT 59.751 55.000 0.00 0.00 0.00 1.98
284 285 1.669440 GTGTCGCTGGGTTGGTAGA 59.331 57.895 0.00 0.00 0.00 2.59
285 286 1.375523 GGTGTCGCTGGGTTGGTAG 60.376 63.158 0.00 0.00 0.00 3.18
286 287 1.697082 TTGGTGTCGCTGGGTTGGTA 61.697 55.000 0.00 0.00 0.00 3.25
287 288 2.351924 ATTGGTGTCGCTGGGTTGGT 62.352 55.000 0.00 0.00 0.00 3.67
288 289 0.322098 TATTGGTGTCGCTGGGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
289 290 0.802494 GTATTGGTGTCGCTGGGTTG 59.198 55.000 0.00 0.00 0.00 3.77
290 291 0.672401 CGTATTGGTGTCGCTGGGTT 60.672 55.000 0.00 0.00 0.00 4.11
291 292 1.079405 CGTATTGGTGTCGCTGGGT 60.079 57.895 0.00 0.00 0.00 4.51
292 293 0.173935 TACGTATTGGTGTCGCTGGG 59.826 55.000 0.00 0.00 0.00 4.45
293 294 1.999048 TTACGTATTGGTGTCGCTGG 58.001 50.000 0.00 0.00 0.00 4.85
294 295 5.705813 TTATTTACGTATTGGTGTCGCTG 57.294 39.130 0.00 0.00 0.00 5.18
295 296 6.314400 ACAATTATTTACGTATTGGTGTCGCT 59.686 34.615 11.56 0.00 34.40 4.93
296 297 6.480285 ACAATTATTTACGTATTGGTGTCGC 58.520 36.000 11.56 0.00 34.40 5.19
297 298 8.169910 TGAACAATTATTTACGTATTGGTGTCG 58.830 33.333 11.56 0.00 34.40 4.35
298 299 9.269415 GTGAACAATTATTTACGTATTGGTGTC 57.731 33.333 11.56 7.08 34.40 3.67
299 300 8.784994 TGTGAACAATTATTTACGTATTGGTGT 58.215 29.630 11.56 3.08 34.40 4.16
300 301 9.272901 CTGTGAACAATTATTTACGTATTGGTG 57.727 33.333 11.56 2.56 34.40 4.17
301 302 9.005777 ACTGTGAACAATTATTTACGTATTGGT 57.994 29.630 11.56 5.72 34.40 3.67
302 303 9.272901 CACTGTGAACAATTATTTACGTATTGG 57.727 33.333 0.32 0.00 34.40 3.16
348 349 5.523552 TCATTATGCTATCCTGTTTCGTGTG 59.476 40.000 0.00 0.00 0.00 3.82
376 377 3.672913 CCATGTGGGCCCCATCTA 58.327 61.111 22.27 0.00 35.28 1.98
499 510 6.147164 TGCAGATTTCGAGACGAATAAGTTTT 59.853 34.615 7.38 0.00 45.28 2.43
674 685 1.563435 CTCGTTGCTGGACTGTGCTG 61.563 60.000 0.00 0.99 0.00 4.41
724 735 4.493747 GACGGAGGGTCGCCTTCG 62.494 72.222 8.10 8.10 43.75 3.79
734 745 2.932614 CAAGCAATTAGACAGACGGAGG 59.067 50.000 0.00 0.00 0.00 4.30
776 787 3.116531 GTTGAGCCGTGTACGCCC 61.117 66.667 0.00 0.00 38.18 6.13
777 788 2.048503 AGTTGAGCCGTGTACGCC 60.049 61.111 0.00 0.00 38.18 5.68
779 790 1.334054 GTACAGTTGAGCCGTGTACG 58.666 55.000 0.00 0.00 37.78 3.67
780 791 2.228343 AGAGTACAGTTGAGCCGTGTAC 59.772 50.000 0.00 4.10 44.58 2.90
781 792 2.228103 CAGAGTACAGTTGAGCCGTGTA 59.772 50.000 0.00 0.00 0.00 2.90
782 793 1.000163 CAGAGTACAGTTGAGCCGTGT 60.000 52.381 0.00 0.00 0.00 4.49
783 794 1.000163 ACAGAGTACAGTTGAGCCGTG 60.000 52.381 0.00 0.00 0.00 4.94
784 795 1.269998 GACAGAGTACAGTTGAGCCGT 59.730 52.381 0.00 0.00 0.00 5.68
803 819 5.131642 AGGAACCATCAAGATCATAGCAAGA 59.868 40.000 0.00 0.00 0.00 3.02
854 876 5.753921 CGTAGGAGATTCTGGTGAAAATACC 59.246 44.000 0.00 0.00 41.24 2.73
856 878 5.128827 AGCGTAGGAGATTCTGGTGAAAATA 59.871 40.000 0.00 0.00 35.63 1.40
857 879 4.080863 AGCGTAGGAGATTCTGGTGAAAAT 60.081 41.667 0.00 0.00 35.63 1.82
860 882 2.457598 AGCGTAGGAGATTCTGGTGAA 58.542 47.619 0.00 0.00 36.54 3.18
1029 1051 3.483587 GTGAAGGGCACAGGAGGA 58.516 61.111 0.00 0.00 46.91 3.71
1158 1180 4.016444 GGGTAGCCAAGAAACATCAATCA 58.984 43.478 5.96 0.00 0.00 2.57
1173 1195 2.579410 TCTTGGTTTTCTGGGTAGCC 57.421 50.000 3.29 3.29 0.00 3.93
1209 1231 5.184479 TCCAAAAATCATGAAGAAGCCAGAG 59.816 40.000 0.00 0.00 0.00 3.35
1300 1336 6.012858 TGGGTTAATTGATATCTCGGGCTTAT 60.013 38.462 3.98 0.00 0.00 1.73
1318 1359 6.070251 TCAGCAGAGAAACATCTATGGGTTAA 60.070 38.462 3.03 0.00 30.33 2.01
1322 1363 4.412796 TCAGCAGAGAAACATCTATGGG 57.587 45.455 3.03 0.00 30.33 4.00
1405 1446 5.642491 GGACCTTAGTTACGAAATTTCAGCT 59.358 40.000 17.99 9.11 0.00 4.24
1417 1458 3.689649 CACAAGCATGGGACCTTAGTTAC 59.310 47.826 0.00 0.00 28.29 2.50
1450 1491 1.952296 CAGACAAGTTGGCTTTGAGCT 59.048 47.619 9.04 0.00 41.99 4.09
1594 1635 4.399303 AGCTGCCACATTACTTACAAATCC 59.601 41.667 0.00 0.00 0.00 3.01
1650 1691 9.107177 GCACACTACTGTCTTCTATACTAGTAA 57.893 37.037 6.70 0.00 0.00 2.24
1651 1692 8.262933 TGCACACTACTGTCTTCTATACTAGTA 58.737 37.037 4.77 4.77 0.00 1.82
1652 1693 7.110810 TGCACACTACTGTCTTCTATACTAGT 58.889 38.462 0.00 0.00 0.00 2.57
1694 1735 8.144155 GGATAGTTTCCAGCTAATGTAACTTC 57.856 38.462 7.18 5.83 44.74 3.01
1739 1780 4.207165 ACCGAATCAGGGTGGAAAATATG 58.793 43.478 0.00 0.00 36.14 1.78
1791 1832 0.615331 GAAGAGTGTGGCATCCTCCA 59.385 55.000 11.39 0.00 0.00 3.86
1898 1939 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1899 1940 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1900 1941 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1901 1942 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1902 1943 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1903 1944 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1904 1945 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1905 1946 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1906 1947 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1907 1948 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1908 1949 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1909 1950 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1910 1951 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1911 1952 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1912 1953 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1913 1954 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1914 1955 5.221422 GGAAGAGAGAGAGAGAGAGAGAGAG 60.221 52.000 0.00 0.00 0.00 3.20
1915 1956 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
1916 1957 4.202305 GGGAAGAGAGAGAGAGAGAGAGAG 60.202 54.167 0.00 0.00 0.00 3.20
1917 1958 3.711704 GGGAAGAGAGAGAGAGAGAGAGA 59.288 52.174 0.00 0.00 0.00 3.10
1918 1959 3.493350 CGGGAAGAGAGAGAGAGAGAGAG 60.493 56.522 0.00 0.00 0.00 3.20
1919 1960 2.434336 CGGGAAGAGAGAGAGAGAGAGA 59.566 54.545 0.00 0.00 0.00 3.10
1920 1961 2.485479 CCGGGAAGAGAGAGAGAGAGAG 60.485 59.091 0.00 0.00 0.00 3.20
1924 1965 0.257616 ACCCGGGAAGAGAGAGAGAG 59.742 60.000 32.02 0.00 0.00 3.20
1982 2025 5.624900 CACGAATCAATGTCAACATCGTTTT 59.375 36.000 6.11 0.00 35.10 2.43
2037 2080 3.481453 AGAGCTTTTCCAACCTCAGAAC 58.519 45.455 0.00 0.00 0.00 3.01
2116 2159 7.148086 GCATACATCCTACTGTCCAATTTTGAA 60.148 37.037 0.00 0.00 0.00 2.69
2158 2201 8.073467 AGATCCTTGTCAAACCTTTTGTTTTA 57.927 30.769 0.00 0.00 44.80 1.52
2466 2597 1.206849 TGGTACATGAGCAGCATTCGA 59.793 47.619 0.00 0.00 34.15 3.71
2548 2679 9.202273 CTAGGATTAACAGCTCTGATAATGAAC 57.798 37.037 14.44 7.15 38.24 3.18
2566 2697 1.746787 TCTTGTCGCGTGCTAGGATTA 59.253 47.619 5.77 0.00 0.00 1.75
2618 2749 7.862372 GTCTCTCAACAGCAATGACAATTAAAA 59.138 33.333 0.00 0.00 0.00 1.52
2627 2758 2.634453 TCAGGTCTCTCAACAGCAATGA 59.366 45.455 0.00 0.00 0.00 2.57
2641 2772 4.277476 TGGTTGTTGTGAAATTCAGGTCT 58.723 39.130 0.00 0.00 0.00 3.85
2657 2788 6.303839 AGTAACACATTTCAGGTATGGTTGT 58.696 36.000 0.00 0.00 0.00 3.32
2672 2803 6.715264 CCTGAAAAGGGTAAGAAGTAACACAT 59.285 38.462 0.00 0.00 0.00 3.21
2673 2804 6.059484 CCTGAAAAGGGTAAGAAGTAACACA 58.941 40.000 0.00 0.00 0.00 3.72
2674 2805 5.048921 GCCTGAAAAGGGTAAGAAGTAACAC 60.049 44.000 0.00 0.00 0.00 3.32
2675 2806 5.067954 GCCTGAAAAGGGTAAGAAGTAACA 58.932 41.667 0.00 0.00 0.00 2.41
2676 2807 5.067954 TGCCTGAAAAGGGTAAGAAGTAAC 58.932 41.667 0.00 0.00 0.00 2.50
2678 2809 4.986054 TGCCTGAAAAGGGTAAGAAGTA 57.014 40.909 0.00 0.00 0.00 2.24
2679 2810 3.876309 TGCCTGAAAAGGGTAAGAAGT 57.124 42.857 0.00 0.00 0.00 3.01
2680 2811 4.335416 TGATGCCTGAAAAGGGTAAGAAG 58.665 43.478 0.00 0.00 0.00 2.85
2682 2813 4.526970 GATGATGCCTGAAAAGGGTAAGA 58.473 43.478 0.00 0.00 0.00 2.10
2683 2814 3.313526 CGATGATGCCTGAAAAGGGTAAG 59.686 47.826 0.00 0.00 0.00 2.34
2717 2848 1.683385 GAACTTCAGTTGCTGGGCTTT 59.317 47.619 0.00 0.00 38.56 3.51
2767 2898 5.463286 TGTGCACTCAAAGCATTCTTATTG 58.537 37.500 19.41 0.00 44.79 1.90
2841 2972 2.747686 GCCAGGTCCAACGAAGGA 59.252 61.111 0.00 0.00 34.64 3.36
2953 3085 9.846248 GAGGATATAATTGAACATAAACATGGC 57.154 33.333 0.00 0.00 0.00 4.40
3087 3228 1.812571 ACTTTCACGATCATGTTGGCC 59.187 47.619 0.00 0.00 0.00 5.36
3117 3258 8.952278 TGTATGTGTTAGTGAACTGTTCTTTTT 58.048 29.630 20.18 6.92 36.45 1.94
3118 3259 8.500753 TGTATGTGTTAGTGAACTGTTCTTTT 57.499 30.769 20.18 9.07 36.45 2.27
3119 3260 8.500753 TTGTATGTGTTAGTGAACTGTTCTTT 57.499 30.769 20.18 11.25 36.45 2.52
3120 3261 8.500753 TTTGTATGTGTTAGTGAACTGTTCTT 57.499 30.769 20.18 11.57 36.45 2.52
3121 3262 8.677148 ATTTGTATGTGTTAGTGAACTGTTCT 57.323 30.769 20.18 4.96 36.45 3.01
3133 3274 7.834803 TGCATCATTTGGATTTGTATGTGTTA 58.165 30.769 0.00 0.00 32.57 2.41
3154 3296 0.466007 TGCGCACCCTAATCATGCAT 60.466 50.000 5.66 0.00 39.39 3.96
3182 3324 0.955428 GCGCCAGAGTCACCATTCAA 60.955 55.000 0.00 0.00 0.00 2.69
3183 3325 1.375908 GCGCCAGAGTCACCATTCA 60.376 57.895 0.00 0.00 0.00 2.57
3184 3326 1.364626 CTGCGCCAGAGTCACCATTC 61.365 60.000 4.18 0.00 32.44 2.67
3185 3327 1.376424 CTGCGCCAGAGTCACCATT 60.376 57.895 4.18 0.00 32.44 3.16
3186 3328 2.267006 CTGCGCCAGAGTCACCAT 59.733 61.111 4.18 0.00 32.44 3.55
3187 3329 2.917227 TCTGCGCCAGAGTCACCA 60.917 61.111 4.18 0.00 35.39 4.17
3199 3351 2.161012 AGCAATCAACATCAACTCTGCG 59.839 45.455 0.00 0.00 33.83 5.18
3201 3353 4.334759 CCCTAGCAATCAACATCAACTCTG 59.665 45.833 0.00 0.00 0.00 3.35
3220 3372 1.843851 CTAACCCAATCCTGTGCCCTA 59.156 52.381 0.00 0.00 0.00 3.53
3222 3374 0.331616 ACTAACCCAATCCTGTGCCC 59.668 55.000 0.00 0.00 0.00 5.36
3307 3461 3.621268 TCGTATCACCATAAGCTGTTTGC 59.379 43.478 0.00 0.00 43.29 3.68
3374 3528 3.706594 GTCCATTGATAGAGTGGTCAGGA 59.293 47.826 0.00 0.00 34.61 3.86
3455 3615 1.364171 GCGACCGAGCACCATCTAT 59.636 57.895 0.00 0.00 37.05 1.98
3503 3663 2.897969 ACGAGTATGTCCCTGAACTGTT 59.102 45.455 0.00 0.00 0.00 3.16
3554 3714 4.399303 CCTTTGGTCCACATGATTCTAACC 59.601 45.833 0.00 0.00 0.00 2.85
3623 4145 4.441495 CGGTCCATGAGATAACAACAGCTA 60.441 45.833 0.00 0.00 0.00 3.32
3638 4161 0.250727 ACACAAAGTCCCGGTCCATG 60.251 55.000 0.00 0.00 0.00 3.66
3639 4162 0.250727 CACACAAAGTCCCGGTCCAT 60.251 55.000 0.00 0.00 0.00 3.41
3663 4186 2.566833 TAAACTGATGCAGTGCACCT 57.433 45.000 22.44 5.18 44.62 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.