Multiple sequence alignment - TraesCS1A01G279300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G279300 chr1A 100.000 5380 0 0 1 5380 475308629 475314008 0.000000e+00 9936.0
1 TraesCS1A01G279300 chr1A 97.828 1335 21 1 3337 4663 475409850 475411184 0.000000e+00 2298.0
2 TraesCS1A01G279300 chr1A 98.171 492 7 2 4891 5380 475411183 475411674 0.000000e+00 857.0
3 TraesCS1A01G279300 chr1A 92.140 229 13 2 4667 4890 45878357 45878129 8.700000e-83 318.0
4 TraesCS1A01G279300 chr1A 90.830 229 14 3 4667 4890 45860040 45859814 3.150000e-77 300.0
5 TraesCS1A01G279300 chr1A 89.205 176 15 3 2495 2667 216420114 216420288 3.260000e-52 217.0
6 TraesCS1A01G279300 chr1A 84.188 234 20 14 4666 4890 585914072 585913847 1.520000e-50 211.0
7 TraesCS1A01G279300 chr1A 90.588 85 8 0 4582 4666 57407824 57407740 4.400000e-21 113.0
8 TraesCS1A01G279300 chr1D 95.361 1940 59 16 2656 4588 376098524 376100439 0.000000e+00 3055.0
9 TraesCS1A01G279300 chr1D 90.914 1684 90 26 434 2089 376096432 376098080 0.000000e+00 2204.0
10 TraesCS1A01G279300 chr1D 97.602 417 10 0 2085 2501 376098111 376098527 0.000000e+00 715.0
11 TraesCS1A01G279300 chr1D 94.488 254 11 2 4897 5147 376100436 376100689 6.530000e-104 388.0
12 TraesCS1A01G279300 chr1D 79.058 191 33 5 490 674 455534492 455534303 2.030000e-24 124.0
13 TraesCS1A01G279300 chr1B 90.438 2123 144 23 3 2088 502635858 502637958 0.000000e+00 2741.0
14 TraesCS1A01G279300 chr1B 97.128 1532 44 0 3057 4588 502638683 502640214 0.000000e+00 2586.0
15 TraesCS1A01G279300 chr1B 93.893 393 14 6 4897 5284 502640211 502640598 7.760000e-163 584.0
16 TraesCS1A01G279300 chr1B 94.444 378 21 0 2124 2501 502637945 502638322 2.790000e-162 582.0
17 TraesCS1A01G279300 chr1B 90.355 394 21 4 2656 3045 502638319 502638699 8.040000e-138 501.0
18 TraesCS1A01G279300 chr1B 94.667 75 4 0 4587 4661 330367027 330367101 3.400000e-22 117.0
19 TraesCS1A01G279300 chr4A 87.902 1926 145 43 2696 4588 701986119 701987989 0.000000e+00 2185.0
20 TraesCS1A01G279300 chr4A 84.698 464 59 3 1113 1567 701985153 701985613 2.280000e-123 453.0
21 TraesCS1A01G279300 chr4A 85.894 397 41 5 2120 2501 701985697 701986093 5.020000e-110 409.0
22 TraesCS1A01G279300 chr4A 91.892 259 16 5 821 1076 701984810 701985066 1.840000e-94 357.0
23 TraesCS1A01G279300 chr4A 89.189 259 22 5 5029 5282 701997607 701997864 8.700000e-83 318.0
24 TraesCS1A01G279300 chr4A 84.247 146 15 6 2552 2692 237242556 237242698 9.400000e-28 135.0
25 TraesCS1A01G279300 chr4A 98.667 75 1 0 4592 4666 318044500 318044426 3.380000e-27 134.0
26 TraesCS1A01G279300 chr5B 87.554 233 21 5 4667 4893 710451903 710451673 4.130000e-66 263.0
27 TraesCS1A01G279300 chr5B 87.719 228 22 4 4667 4890 710456926 710456701 1.490000e-65 261.0
28 TraesCS1A01G279300 chr5B 85.957 235 23 7 4662 4890 37458905 37459135 5.380000e-60 243.0
29 TraesCS1A01G279300 chr5B 85.345 232 24 7 4667 4892 37463925 37464152 1.170000e-56 231.0
30 TraesCS1A01G279300 chr4D 94.304 158 5 3 2506 2660 34661533 34661689 6.960000e-59 239.0
31 TraesCS1A01G279300 chr4D 91.925 161 13 0 2500 2660 401095701 401095861 5.420000e-55 226.0
32 TraesCS1A01G279300 chr4D 79.381 194 27 10 490 674 343395341 343395530 2.030000e-24 124.0
33 TraesCS1A01G279300 chr5D 93.590 156 8 1 2506 2659 529218172 529218327 1.170000e-56 231.0
34 TraesCS1A01G279300 chr5D 83.571 140 22 1 1 140 410485083 410485221 4.370000e-26 130.0
35 TraesCS1A01G279300 chr5A 93.506 154 6 3 2509 2659 320214396 320214244 5.420000e-55 226.0
36 TraesCS1A01G279300 chr3D 93.464 153 8 1 2509 2659 10532705 10532553 5.420000e-55 226.0
37 TraesCS1A01G279300 chr3D 92.994 157 7 3 2506 2659 87926155 87926000 5.420000e-55 226.0
38 TraesCS1A01G279300 chr3D 95.238 42 2 0 2618 2659 555801681 555801722 3.480000e-07 67.6
39 TraesCS1A01G279300 chr7A 84.914 232 23 9 4667 4891 727820795 727821021 1.950000e-54 224.0
40 TraesCS1A01G279300 chr7A 83.613 238 24 10 4663 4890 727815823 727816055 5.460000e-50 209.0
41 TraesCS1A01G279300 chr7A 96.154 78 1 1 4591 4666 681522635 681522558 5.660000e-25 126.0
42 TraesCS1A01G279300 chr7A 93.506 77 4 1 4590 4666 50004306 50004231 4.400000e-21 113.0
43 TraesCS1A01G279300 chr2B 90.419 167 14 1 2496 2660 608226721 608226887 9.070000e-53 219.0
44 TraesCS1A01G279300 chr6D 90.058 171 12 4 2492 2659 145462456 145462624 3.260000e-52 217.0
45 TraesCS1A01G279300 chr3B 94.872 78 4 0 4584 4661 179011527 179011450 7.320000e-24 122.0
46 TraesCS1A01G279300 chr3B 80.198 101 18 2 5280 5379 586717797 586717896 2.080000e-09 75.0
47 TraesCS1A01G279300 chr2D 93.590 78 5 0 4584 4661 188966996 188966919 3.400000e-22 117.0
48 TraesCS1A01G279300 chr2A 93.590 78 5 0 4584 4661 688667270 688667347 3.400000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G279300 chr1A 475308629 475314008 5379 False 9936.0 9936 100.00000 1 5380 1 chr1A.!!$F2 5379
1 TraesCS1A01G279300 chr1A 475409850 475411674 1824 False 1577.5 2298 97.99950 3337 5380 2 chr1A.!!$F3 2043
2 TraesCS1A01G279300 chr1D 376096432 376100689 4257 False 1590.5 3055 94.59125 434 5147 4 chr1D.!!$F1 4713
3 TraesCS1A01G279300 chr1B 502635858 502640598 4740 False 1398.8 2741 93.25160 3 5284 5 chr1B.!!$F2 5281
4 TraesCS1A01G279300 chr4A 701984810 701987989 3179 False 851.0 2185 87.59650 821 4588 4 chr4A.!!$F3 3767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.246086 GGCCGGCATGAAACAAATCA 59.754 50.0 30.85 0.0 0.00 2.57 F
1821 1912 0.035056 AGCAAGCAGTACATGGGGAC 60.035 55.0 0.00 0.0 0.00 4.46 F
2447 2615 0.028242 CGTACGTGTGCTTTTTGGCA 59.972 50.0 7.22 0.0 40.15 4.92 F
3028 3215 0.179045 ACGCAACTTCAGTTCAGGCT 60.179 50.0 0.00 0.0 35.83 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2131 1.174078 TCAGTGGTGCTGCAATGGTG 61.174 55.000 2.77 0.15 44.66 4.17 R
2643 2811 0.396001 GAGCTACTCCCTCCGTTCCT 60.396 60.000 0.00 0.00 0.00 3.36 R
4198 4403 2.546368 CCGTTCGTCATTCCTGTTCAAA 59.454 45.455 0.00 0.00 0.00 2.69 R
4657 4872 0.244721 ACTACTTTACACCGCCGTCC 59.755 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.468914 CTGTCGGTGTTCAGATCGAGA 59.531 52.381 0.00 0.00 34.02 4.04
55 56 0.539438 AGAAGGCCGGCATGAAACAA 60.539 50.000 30.85 0.00 0.00 2.83
59 60 0.246086 GGCCGGCATGAAACAAATCA 59.754 50.000 30.85 0.00 0.00 2.57
66 67 5.007528 CCGGCATGAAACAAATCAAAGTTTT 59.992 36.000 0.00 0.00 38.01 2.43
75 76 4.338118 ACAAATCAAAGTTTTGGAGCTCGA 59.662 37.500 7.83 0.00 38.18 4.04
85 86 0.392706 TGGAGCTCGAAGAACAGCAA 59.607 50.000 7.83 0.00 38.18 3.91
86 87 1.074752 GGAGCTCGAAGAACAGCAAG 58.925 55.000 7.83 0.00 38.18 4.01
96 97 2.426122 GAACAGCAAGGCCAAGCACC 62.426 60.000 19.83 4.04 0.00 5.01
97 98 2.913578 CAGCAAGGCCAAGCACCA 60.914 61.111 19.83 0.00 0.00 4.17
116 117 2.288643 GGGGCTCCTCTGGATCCT 59.711 66.667 14.23 0.00 38.03 3.24
119 120 0.473501 GGGCTCCTCTGGATCCTGAT 60.474 60.000 20.45 0.00 38.03 2.90
120 121 0.686224 GGCTCCTCTGGATCCTGATG 59.314 60.000 20.45 17.57 35.32 3.07
133 134 2.040988 TGATGGGCCGGATCTGGA 60.041 61.111 25.54 3.54 0.00 3.86
141 142 2.187946 CGGATCTGGACAGTGCCC 59.812 66.667 0.00 0.00 0.00 5.36
143 144 2.187946 GATCTGGACAGTGCCCCG 59.812 66.667 0.00 0.00 0.00 5.73
159 160 3.905678 CGCCCAACCGTTGCCAAA 61.906 61.111 5.68 0.00 0.00 3.28
161 162 2.791868 GCCCAACCGTTGCCAAACT 61.792 57.895 5.68 0.00 33.87 2.66
193 194 4.459089 GCTGCGACTGACCCTCCC 62.459 72.222 0.00 0.00 0.00 4.30
197 198 3.450115 CGACTGACCCTCCCCGAC 61.450 72.222 0.00 0.00 0.00 4.79
200 201 2.606519 CTGACCCTCCCCGACCAA 60.607 66.667 0.00 0.00 0.00 3.67
203 204 2.606826 ACCCTCCCCGACCAAGAC 60.607 66.667 0.00 0.00 0.00 3.01
212 213 1.007336 CCGACCAAGACGAAGAACCG 61.007 60.000 0.00 0.00 0.00 4.44
287 288 4.562425 TCCCCGCATGGAATCGCC 62.562 66.667 0.00 0.00 37.49 5.54
310 311 3.041940 CGTCGAGCCCCAACACAC 61.042 66.667 0.00 0.00 0.00 3.82
312 313 3.228017 TCGAGCCCCAACACACGA 61.228 61.111 0.00 0.00 0.00 4.35
320 321 0.679505 CCCAACACACGAAGAGGAGA 59.320 55.000 0.00 0.00 0.00 3.71
321 322 1.337260 CCCAACACACGAAGAGGAGAG 60.337 57.143 0.00 0.00 0.00 3.20
324 325 1.216710 CACACGAAGAGGAGAGCCC 59.783 63.158 0.00 0.00 33.31 5.19
325 326 1.985116 ACACGAAGAGGAGAGCCCC 60.985 63.158 0.00 0.00 34.66 5.80
359 360 2.103339 AACACCAGCCATGCTTTGCC 62.103 55.000 0.00 0.00 36.40 4.52
362 363 3.376078 CAGCCATGCTTTGCCCGT 61.376 61.111 0.00 0.00 36.40 5.28
400 402 4.888325 AGGGGATGGAGGCGGAGG 62.888 72.222 0.00 0.00 0.00 4.30
415 417 1.153208 GAGGACTCTACTCCGGCGA 60.153 63.158 9.30 0.00 35.20 5.54
425 427 1.190178 ACTCCGGCGACTAGGGTTTT 61.190 55.000 9.30 0.00 0.00 2.43
426 428 0.459759 CTCCGGCGACTAGGGTTTTC 60.460 60.000 9.30 0.00 0.00 2.29
427 429 0.901580 TCCGGCGACTAGGGTTTTCT 60.902 55.000 9.30 0.00 0.00 2.52
431 433 2.105766 GGCGACTAGGGTTTTCTCCTA 58.894 52.381 0.00 0.00 35.92 2.94
464 466 2.927580 GCGACGTGAGGGGTTCAGA 61.928 63.158 0.00 0.00 36.21 3.27
482 484 3.485346 AAGCCAAGCGAAACCCCGA 62.485 57.895 0.00 0.00 0.00 5.14
483 485 2.969300 AAGCCAAGCGAAACCCCGAA 62.969 55.000 0.00 0.00 0.00 4.30
493 495 3.199677 CGAAACCCCGAACTATAATGCA 58.800 45.455 0.00 0.00 0.00 3.96
547 550 5.236478 TCGTCTTGTCAAAACTCATTTCTCC 59.764 40.000 0.00 0.00 0.00 3.71
562 565 5.839063 TCATTTCTCCCTTATATGTCCGAGT 59.161 40.000 0.00 0.00 0.00 4.18
570 573 4.201980 CCTTATATGTCCGAGTGTGTTCGA 60.202 45.833 0.00 0.00 43.03 3.71
581 584 3.191669 AGTGTGTTCGAACATCAAACGA 58.808 40.909 31.81 5.41 41.59 3.85
582 585 3.245284 AGTGTGTTCGAACATCAAACGAG 59.755 43.478 31.81 0.00 41.59 4.18
613 616 4.142038 AGGCTCACTAAAATTCAACCGTT 58.858 39.130 0.00 0.00 0.00 4.44
616 619 6.263617 AGGCTCACTAAAATTCAACCGTTTAA 59.736 34.615 0.00 0.00 0.00 1.52
732 738 1.621622 GGGGTAGTAAGAGGTGAGGCA 60.622 57.143 0.00 0.00 0.00 4.75
734 740 2.772515 GGGTAGTAAGAGGTGAGGCAAT 59.227 50.000 0.00 0.00 0.00 3.56
743 749 8.718656 AGTAAGAGGTGAGGCAATAATAAATCT 58.281 33.333 0.00 0.00 0.00 2.40
765 771 5.636121 TCTGACGAAAATAAACGTGCATACT 59.364 36.000 0.00 0.00 42.74 2.12
795 802 9.465985 GGTTTAGAGTAAGATCTTTTAGGATCG 57.534 37.037 14.36 0.00 44.71 3.69
796 803 8.970293 GTTTAGAGTAAGATCTTTTAGGATCGC 58.030 37.037 14.36 0.00 44.71 4.58
872 881 5.569355 ACCCAGTTGATCAATCATACACAA 58.431 37.500 12.12 0.00 36.56 3.33
885 895 9.679661 TCAATCATACACAAATATACCACTTGT 57.320 29.630 0.00 0.00 33.62 3.16
1532 1600 5.470098 TCCTCAACATTAGCAGAAACTGAAC 59.530 40.000 2.81 0.00 32.44 3.18
1821 1912 0.035056 AGCAAGCAGTACATGGGGAC 60.035 55.000 0.00 0.00 0.00 4.46
1847 1938 1.082690 GCAACTTGAGAGCTGCTACC 58.917 55.000 0.15 0.00 40.87 3.18
1848 1939 1.338579 GCAACTTGAGAGCTGCTACCT 60.339 52.381 0.15 0.00 40.87 3.08
1849 1940 2.615869 CAACTTGAGAGCTGCTACCTC 58.384 52.381 0.15 6.79 0.00 3.85
1926 2041 9.628500 CCAATCTGATGGATGATGTGATTATAT 57.372 33.333 0.00 0.00 43.54 0.86
1966 2082 6.100134 ACCCTTGACTGTTTACTTGGTTACTA 59.900 38.462 0.00 0.00 0.00 1.82
2015 2131 6.374613 AGTTGCTACTCCATAAAGGCTAAAAC 59.625 38.462 0.00 0.00 37.29 2.43
2025 2141 3.665745 AAGGCTAAAACACCATTGCAG 57.334 42.857 0.00 0.00 0.00 4.41
2075 2191 9.662947 ACAAGTGTATGATGATGTGATATATGG 57.337 33.333 0.00 0.00 0.00 2.74
2076 2192 9.880157 CAAGTGTATGATGATGTGATATATGGA 57.120 33.333 0.00 0.00 0.00 3.41
2077 2193 9.881649 AAGTGTATGATGATGTGATATATGGAC 57.118 33.333 0.00 0.00 0.00 4.02
2078 2194 9.264653 AGTGTATGATGATGTGATATATGGACT 57.735 33.333 0.00 0.00 0.00 3.85
2083 2199 8.953368 TGATGATGTGATATATGGACTAATGC 57.047 34.615 0.00 0.00 0.00 3.56
2105 2258 6.462500 TGCAGCATTTGTAACAACCATTAAT 58.538 32.000 0.00 0.00 0.00 1.40
2199 2361 0.620700 CACCTACCCCCTTACTGGCT 60.621 60.000 0.00 0.00 0.00 4.75
2413 2581 4.537433 GCCGCCTCTCAATCCGCT 62.537 66.667 0.00 0.00 0.00 5.52
2428 2596 0.657840 CCGCTACTATGTTGCTTGCC 59.342 55.000 3.16 0.00 32.61 4.52
2447 2615 0.028242 CGTACGTGTGCTTTTTGGCA 59.972 50.000 7.22 0.00 40.15 4.92
2511 2679 8.907222 TTACCAAAGTAAGTATTTTCTCCGTT 57.093 30.769 0.00 0.00 33.45 4.44
2512 2680 7.430992 ACCAAAGTAAGTATTTTCTCCGTTC 57.569 36.000 0.00 0.00 0.00 3.95
2513 2681 6.429078 ACCAAAGTAAGTATTTTCTCCGTTCC 59.571 38.462 0.00 0.00 0.00 3.62
2514 2682 6.128090 CCAAAGTAAGTATTTTCTCCGTTCCC 60.128 42.308 0.00 0.00 0.00 3.97
2515 2683 5.750352 AGTAAGTATTTTCTCCGTTCCCA 57.250 39.130 0.00 0.00 0.00 4.37
2516 2684 6.117975 AGTAAGTATTTTCTCCGTTCCCAA 57.882 37.500 0.00 0.00 0.00 4.12
2517 2685 6.536447 AGTAAGTATTTTCTCCGTTCCCAAA 58.464 36.000 0.00 0.00 0.00 3.28
2518 2686 7.173032 AGTAAGTATTTTCTCCGTTCCCAAAT 58.827 34.615 0.00 0.00 0.00 2.32
2519 2687 8.323567 AGTAAGTATTTTCTCCGTTCCCAAATA 58.676 33.333 0.00 0.00 0.00 1.40
2520 2688 9.117183 GTAAGTATTTTCTCCGTTCCCAAATAT 57.883 33.333 0.00 0.00 0.00 1.28
2521 2689 7.568199 AGTATTTTCTCCGTTCCCAAATATG 57.432 36.000 0.00 0.00 0.00 1.78
2522 2690 7.116736 AGTATTTTCTCCGTTCCCAAATATGT 58.883 34.615 0.00 0.00 0.00 2.29
2523 2691 5.890424 TTTTCTCCGTTCCCAAATATGTC 57.110 39.130 0.00 0.00 0.00 3.06
2524 2692 4.837093 TTCTCCGTTCCCAAATATGTCT 57.163 40.909 0.00 0.00 0.00 3.41
2525 2693 4.837093 TCTCCGTTCCCAAATATGTCTT 57.163 40.909 0.00 0.00 0.00 3.01
2526 2694 5.174037 TCTCCGTTCCCAAATATGTCTTT 57.826 39.130 0.00 0.00 0.00 2.52
2527 2695 5.566469 TCTCCGTTCCCAAATATGTCTTTT 58.434 37.500 0.00 0.00 0.00 2.27
2528 2696 6.007703 TCTCCGTTCCCAAATATGTCTTTTT 58.992 36.000 0.00 0.00 0.00 1.94
2529 2697 7.169591 TCTCCGTTCCCAAATATGTCTTTTTA 58.830 34.615 0.00 0.00 0.00 1.52
2530 2698 7.335924 TCTCCGTTCCCAAATATGTCTTTTTAG 59.664 37.037 0.00 0.00 0.00 1.85
2531 2699 7.169591 TCCGTTCCCAAATATGTCTTTTTAGA 58.830 34.615 0.00 0.00 0.00 2.10
2532 2700 7.335924 TCCGTTCCCAAATATGTCTTTTTAGAG 59.664 37.037 0.00 0.00 0.00 2.43
2533 2701 7.335924 CCGTTCCCAAATATGTCTTTTTAGAGA 59.664 37.037 0.00 0.00 0.00 3.10
2534 2702 8.893727 CGTTCCCAAATATGTCTTTTTAGAGAT 58.106 33.333 0.00 0.00 0.00 2.75
2600 2768 6.246420 AGTGTACATTCACTCATTTTGCTC 57.754 37.500 0.00 0.00 44.07 4.26
2601 2769 5.764686 AGTGTACATTCACTCATTTTGCTCA 59.235 36.000 0.00 0.00 44.07 4.26
2602 2770 6.072838 AGTGTACATTCACTCATTTTGCTCAG 60.073 38.462 0.00 0.00 44.07 3.35
2603 2771 5.764686 TGTACATTCACTCATTTTGCTCAGT 59.235 36.000 0.00 0.00 0.00 3.41
2604 2772 6.934083 TGTACATTCACTCATTTTGCTCAGTA 59.066 34.615 0.00 0.00 0.00 2.74
2605 2773 7.607607 TGTACATTCACTCATTTTGCTCAGTAT 59.392 33.333 0.00 0.00 0.00 2.12
2606 2774 6.849502 ACATTCACTCATTTTGCTCAGTATG 58.150 36.000 0.00 0.00 37.54 2.39
2607 2775 6.432162 ACATTCACTCATTTTGCTCAGTATGT 59.568 34.615 0.00 0.00 37.40 2.29
2608 2776 7.607607 ACATTCACTCATTTTGCTCAGTATGTA 59.392 33.333 0.00 0.00 37.40 2.29
2609 2777 7.601073 TTCACTCATTTTGCTCAGTATGTAG 57.399 36.000 0.00 0.00 37.40 2.74
2610 2778 6.701340 TCACTCATTTTGCTCAGTATGTAGT 58.299 36.000 0.00 0.00 37.40 2.73
2611 2779 6.813649 TCACTCATTTTGCTCAGTATGTAGTC 59.186 38.462 0.00 0.00 37.40 2.59
2612 2780 6.815641 CACTCATTTTGCTCAGTATGTAGTCT 59.184 38.462 0.00 0.00 37.40 3.24
2613 2781 7.009999 CACTCATTTTGCTCAGTATGTAGTCTC 59.990 40.741 0.00 0.00 37.40 3.36
2614 2782 6.935167 TCATTTTGCTCAGTATGTAGTCTCA 58.065 36.000 0.00 0.00 37.40 3.27
2615 2783 7.386059 TCATTTTGCTCAGTATGTAGTCTCAA 58.614 34.615 0.00 0.00 37.40 3.02
2616 2784 8.043113 TCATTTTGCTCAGTATGTAGTCTCAAT 58.957 33.333 0.00 0.00 37.40 2.57
2617 2785 8.671921 CATTTTGCTCAGTATGTAGTCTCAATT 58.328 33.333 0.00 0.00 37.40 2.32
2618 2786 7.601073 TTTGCTCAGTATGTAGTCTCAATTG 57.399 36.000 0.00 0.00 37.40 2.32
2619 2787 5.664457 TGCTCAGTATGTAGTCTCAATTGG 58.336 41.667 5.42 0.00 37.40 3.16
2620 2788 5.422012 TGCTCAGTATGTAGTCTCAATTGGA 59.578 40.000 5.42 0.00 37.40 3.53
2621 2789 6.070824 TGCTCAGTATGTAGTCTCAATTGGAA 60.071 38.462 5.42 0.00 37.40 3.53
2622 2790 6.989169 GCTCAGTATGTAGTCTCAATTGGAAT 59.011 38.462 5.42 4.04 37.40 3.01
2623 2791 7.170658 GCTCAGTATGTAGTCTCAATTGGAATC 59.829 40.741 5.42 0.00 37.40 2.52
2624 2792 8.311395 TCAGTATGTAGTCTCAATTGGAATCT 57.689 34.615 5.42 2.60 37.40 2.40
2625 2793 8.417106 TCAGTATGTAGTCTCAATTGGAATCTC 58.583 37.037 5.42 0.52 37.40 2.75
2626 2794 8.420222 CAGTATGTAGTCTCAATTGGAATCTCT 58.580 37.037 5.42 0.00 0.00 3.10
2627 2795 9.647918 AGTATGTAGTCTCAATTGGAATCTCTA 57.352 33.333 5.42 0.00 0.00 2.43
2634 2802 9.225436 AGTCTCAATTGGAATCTCTAAAAAGAC 57.775 33.333 5.42 6.32 30.93 3.01
2635 2803 9.225436 GTCTCAATTGGAATCTCTAAAAAGACT 57.775 33.333 5.42 0.00 29.64 3.24
2636 2804 9.799106 TCTCAATTGGAATCTCTAAAAAGACTT 57.201 29.630 5.42 0.00 0.00 3.01
2653 2821 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2654 2822 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2655 2823 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2656 2824 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2657 2825 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2658 2826 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2773 2941 1.493022 AGCAGTAACCTCCACCAACAA 59.507 47.619 0.00 0.00 0.00 2.83
2876 3057 8.792830 AGAAGAATTAGTTTAGCTGTGCATAA 57.207 30.769 0.00 0.00 0.00 1.90
2896 3077 8.201464 TGCATAAAGGTATTCTTCGTCTCATAA 58.799 33.333 0.00 0.00 33.94 1.90
3028 3215 0.179045 ACGCAACTTCAGTTCAGGCT 60.179 50.000 0.00 0.00 35.83 4.58
3029 3216 0.514691 CGCAACTTCAGTTCAGGCTC 59.485 55.000 0.00 0.00 35.83 4.70
3030 3217 0.877743 GCAACTTCAGTTCAGGCTCC 59.122 55.000 0.00 0.00 35.83 4.70
3031 3218 1.544314 GCAACTTCAGTTCAGGCTCCT 60.544 52.381 0.00 0.00 35.83 3.69
3032 3219 2.289694 GCAACTTCAGTTCAGGCTCCTA 60.290 50.000 0.00 0.00 35.83 2.94
3033 3220 3.807209 GCAACTTCAGTTCAGGCTCCTAA 60.807 47.826 0.00 0.00 35.83 2.69
3034 3221 4.583871 CAACTTCAGTTCAGGCTCCTAAT 58.416 43.478 0.00 0.00 35.83 1.73
3035 3222 4.917906 ACTTCAGTTCAGGCTCCTAATT 57.082 40.909 0.00 0.00 0.00 1.40
3036 3223 5.248380 ACTTCAGTTCAGGCTCCTAATTT 57.752 39.130 0.00 0.00 0.00 1.82
3037 3224 5.249420 ACTTCAGTTCAGGCTCCTAATTTC 58.751 41.667 0.00 0.00 0.00 2.17
3038 3225 4.908601 TCAGTTCAGGCTCCTAATTTCA 57.091 40.909 0.00 0.00 0.00 2.69
3039 3226 5.441718 TCAGTTCAGGCTCCTAATTTCAT 57.558 39.130 0.00 0.00 0.00 2.57
3040 3227 5.819991 TCAGTTCAGGCTCCTAATTTCATT 58.180 37.500 0.00 0.00 0.00 2.57
3041 3228 6.248433 TCAGTTCAGGCTCCTAATTTCATTT 58.752 36.000 0.00 0.00 0.00 2.32
3042 3229 6.721208 TCAGTTCAGGCTCCTAATTTCATTTT 59.279 34.615 0.00 0.00 0.00 1.82
3043 3230 7.233348 TCAGTTCAGGCTCCTAATTTCATTTTT 59.767 33.333 0.00 0.00 0.00 1.94
3443 3630 6.432783 TGTGATAAACAACTGGGTAAGAATGG 59.567 38.462 0.00 0.00 35.24 3.16
4113 4316 2.735134 ACGGTATGTTCGCAAACTTCTC 59.265 45.455 0.00 0.00 36.30 2.87
4198 4403 0.910338 ATCTGGCATCTCTGTGCTGT 59.090 50.000 0.00 0.00 44.45 4.40
4599 4814 4.648307 TCTCTTTTAGTATTCCCTCCGTCC 59.352 45.833 0.00 0.00 0.00 4.79
4664 4879 3.176708 CGTCTTATATTATGGGACGGCG 58.823 50.000 4.80 4.80 43.69 6.46
4665 4880 3.518590 GTCTTATATTATGGGACGGCGG 58.481 50.000 13.24 0.00 0.00 6.13
4666 4881 3.056322 GTCTTATATTATGGGACGGCGGT 60.056 47.826 13.24 0.00 0.00 5.68
4667 4882 3.056393 TCTTATATTATGGGACGGCGGTG 60.056 47.826 13.24 0.00 0.00 4.94
4668 4883 1.053424 ATATTATGGGACGGCGGTGT 58.947 50.000 13.24 0.00 0.00 4.16
4669 4884 1.702182 TATTATGGGACGGCGGTGTA 58.298 50.000 13.24 0.00 0.00 2.90
4670 4885 0.831966 ATTATGGGACGGCGGTGTAA 59.168 50.000 13.24 3.48 0.00 2.41
4671 4886 0.612229 TTATGGGACGGCGGTGTAAA 59.388 50.000 13.24 0.00 0.00 2.01
4672 4887 0.176219 TATGGGACGGCGGTGTAAAG 59.824 55.000 13.24 0.00 0.00 1.85
4673 4888 1.833787 ATGGGACGGCGGTGTAAAGT 61.834 55.000 13.24 0.00 0.00 2.66
4674 4889 1.184322 TGGGACGGCGGTGTAAAGTA 61.184 55.000 13.24 0.00 0.00 2.24
4675 4890 0.459063 GGGACGGCGGTGTAAAGTAG 60.459 60.000 13.24 0.00 0.00 2.57
4676 4891 0.244721 GGACGGCGGTGTAAAGTAGT 59.755 55.000 13.24 0.00 0.00 2.73
4677 4892 1.337167 GGACGGCGGTGTAAAGTAGTT 60.337 52.381 13.24 0.00 0.00 2.24
4678 4893 2.407090 GACGGCGGTGTAAAGTAGTTT 58.593 47.619 13.24 0.37 0.00 2.66
4679 4894 2.137523 ACGGCGGTGTAAAGTAGTTTG 58.862 47.619 13.24 0.00 0.00 2.93
4680 4895 1.461897 CGGCGGTGTAAAGTAGTTTGG 59.538 52.381 5.77 0.00 0.00 3.28
4681 4896 1.808343 GGCGGTGTAAAGTAGTTTGGG 59.192 52.381 5.77 0.00 0.00 4.12
4682 4897 2.550639 GGCGGTGTAAAGTAGTTTGGGA 60.551 50.000 5.77 0.00 0.00 4.37
4683 4898 3.140623 GCGGTGTAAAGTAGTTTGGGAA 58.859 45.455 5.77 0.00 0.00 3.97
4684 4899 3.187842 GCGGTGTAAAGTAGTTTGGGAAG 59.812 47.826 5.77 0.00 0.00 3.46
4685 4900 3.187842 CGGTGTAAAGTAGTTTGGGAAGC 59.812 47.826 5.77 0.00 0.00 3.86
4686 4901 3.187842 GGTGTAAAGTAGTTTGGGAAGCG 59.812 47.826 5.77 0.00 0.00 4.68
4687 4902 3.811497 GTGTAAAGTAGTTTGGGAAGCGT 59.189 43.478 5.77 0.00 0.00 5.07
4688 4903 4.990426 GTGTAAAGTAGTTTGGGAAGCGTA 59.010 41.667 5.77 0.00 0.00 4.42
4689 4904 5.119743 GTGTAAAGTAGTTTGGGAAGCGTAG 59.880 44.000 5.77 0.00 0.00 3.51
4690 4905 4.612264 AAAGTAGTTTGGGAAGCGTAGA 57.388 40.909 0.00 0.00 0.00 2.59
4691 4906 4.612264 AAGTAGTTTGGGAAGCGTAGAA 57.388 40.909 0.00 0.00 0.00 2.10
4692 4907 3.922910 AGTAGTTTGGGAAGCGTAGAAC 58.077 45.455 0.00 0.00 0.00 3.01
4693 4908 2.180432 AGTTTGGGAAGCGTAGAACC 57.820 50.000 0.00 0.00 0.00 3.62
4694 4909 1.162698 GTTTGGGAAGCGTAGAACCC 58.837 55.000 0.00 0.00 42.37 4.11
4695 4910 1.061546 TTTGGGAAGCGTAGAACCCT 58.938 50.000 0.00 0.00 42.49 4.34
4696 4911 1.061546 TTGGGAAGCGTAGAACCCTT 58.938 50.000 0.00 0.00 42.49 3.95
4697 4912 1.061546 TGGGAAGCGTAGAACCCTTT 58.938 50.000 0.00 0.00 42.49 3.11
4698 4913 1.271163 TGGGAAGCGTAGAACCCTTTG 60.271 52.381 0.00 0.00 42.49 2.77
4699 4914 1.271217 GGGAAGCGTAGAACCCTTTGT 60.271 52.381 0.00 0.00 39.28 2.83
4700 4915 2.074576 GGAAGCGTAGAACCCTTTGTC 58.925 52.381 0.00 0.00 0.00 3.18
4701 4916 2.289506 GGAAGCGTAGAACCCTTTGTCT 60.290 50.000 0.00 0.00 0.00 3.41
4702 4917 2.745515 AGCGTAGAACCCTTTGTCTC 57.254 50.000 0.00 0.00 0.00 3.36
4703 4918 1.067776 AGCGTAGAACCCTTTGTCTCG 60.068 52.381 0.00 0.00 0.00 4.04
4704 4919 1.992170 CGTAGAACCCTTTGTCTCGG 58.008 55.000 0.00 0.00 0.00 4.63
4705 4920 1.403780 CGTAGAACCCTTTGTCTCGGG 60.404 57.143 0.00 0.00 46.26 5.14
4706 4921 0.611714 TAGAACCCTTTGTCTCGGGC 59.388 55.000 0.00 0.00 44.63 6.13
4707 4922 1.674651 GAACCCTTTGTCTCGGGCC 60.675 63.158 0.00 0.00 44.63 5.80
4708 4923 3.546714 AACCCTTTGTCTCGGGCCG 62.547 63.158 22.51 22.51 44.63 6.13
4715 4930 4.203076 GTCTCGGGCCGCGTGTAT 62.203 66.667 23.83 0.00 0.00 2.29
4716 4931 2.516695 TCTCGGGCCGCGTGTATA 60.517 61.111 23.83 0.00 0.00 1.47
4717 4932 1.900016 TCTCGGGCCGCGTGTATAT 60.900 57.895 23.83 0.00 0.00 0.86
4718 4933 0.606130 TCTCGGGCCGCGTGTATATA 60.606 55.000 23.83 0.00 0.00 0.86
4719 4934 0.454600 CTCGGGCCGCGTGTATATAT 59.545 55.000 23.83 0.00 0.00 0.86
4720 4935 0.889994 TCGGGCCGCGTGTATATATT 59.110 50.000 23.83 0.00 0.00 1.28
4721 4936 0.996462 CGGGCCGCGTGTATATATTG 59.004 55.000 15.42 0.00 0.00 1.90
4722 4937 1.403116 CGGGCCGCGTGTATATATTGA 60.403 52.381 15.42 0.00 0.00 2.57
4723 4938 2.268298 GGGCCGCGTGTATATATTGAG 58.732 52.381 4.92 0.00 0.00 3.02
4724 4939 2.268298 GGCCGCGTGTATATATTGAGG 58.732 52.381 4.92 0.00 0.00 3.86
4725 4940 1.659098 GCCGCGTGTATATATTGAGGC 59.341 52.381 4.92 9.57 38.30 4.70
4726 4941 2.929161 GCCGCGTGTATATATTGAGGCA 60.929 50.000 4.92 0.00 43.77 4.75
4727 4942 3.322369 CCGCGTGTATATATTGAGGCAA 58.678 45.455 4.92 0.00 0.00 4.52
4728 4943 3.743911 CCGCGTGTATATATTGAGGCAAA 59.256 43.478 4.92 0.00 0.00 3.68
4729 4944 4.143115 CCGCGTGTATATATTGAGGCAAAG 60.143 45.833 4.92 0.00 0.00 2.77
4730 4945 4.666655 CGCGTGTATATATTGAGGCAAAGC 60.667 45.833 0.00 0.00 0.00 3.51
4741 4956 2.657297 GGCAAAGCCTTGGATGACA 58.343 52.632 0.00 0.00 46.69 3.58
4742 4957 0.968405 GGCAAAGCCTTGGATGACAA 59.032 50.000 0.00 0.00 46.69 3.18
4755 4970 4.641396 TGGATGACAAGTTACAGTGAAGG 58.359 43.478 0.00 0.00 0.00 3.46
4756 4971 4.102524 TGGATGACAAGTTACAGTGAAGGT 59.897 41.667 0.00 0.00 0.00 3.50
4757 4972 5.063880 GGATGACAAGTTACAGTGAAGGTT 58.936 41.667 0.00 0.00 0.00 3.50
4758 4973 5.049405 GGATGACAAGTTACAGTGAAGGTTG 60.049 44.000 0.00 0.00 0.00 3.77
4759 4974 5.092554 TGACAAGTTACAGTGAAGGTTGA 57.907 39.130 0.00 0.00 0.00 3.18
4760 4975 5.680619 TGACAAGTTACAGTGAAGGTTGAT 58.319 37.500 0.00 0.00 0.00 2.57
4761 4976 5.758296 TGACAAGTTACAGTGAAGGTTGATC 59.242 40.000 0.00 0.00 0.00 2.92
4762 4977 4.750098 ACAAGTTACAGTGAAGGTTGATCG 59.250 41.667 0.00 0.00 0.00 3.69
4763 4978 4.866508 AGTTACAGTGAAGGTTGATCGA 57.133 40.909 0.00 0.00 0.00 3.59
4764 4979 4.810790 AGTTACAGTGAAGGTTGATCGAG 58.189 43.478 0.00 0.00 0.00 4.04
4765 4980 4.523173 AGTTACAGTGAAGGTTGATCGAGA 59.477 41.667 0.00 0.00 0.00 4.04
4766 4981 3.584406 ACAGTGAAGGTTGATCGAGAG 57.416 47.619 0.00 0.00 0.00 3.20
4779 4994 2.812358 TCGAGAGAGGAGATCGAGAG 57.188 55.000 0.00 0.00 40.29 3.20
4780 4995 2.312390 TCGAGAGAGGAGATCGAGAGA 58.688 52.381 0.00 0.00 40.29 3.10
4781 4996 2.296190 TCGAGAGAGGAGATCGAGAGAG 59.704 54.545 0.00 0.00 40.29 3.20
4782 4997 4.869700 TCGAGAGAGGAGATCGAGAGAGG 61.870 56.522 0.00 0.00 40.29 3.69
4792 5007 2.727123 TCGAGAGAGGAGCAGAAGAT 57.273 50.000 0.00 0.00 34.84 2.40
4793 5008 2.571212 TCGAGAGAGGAGCAGAAGATC 58.429 52.381 0.00 0.00 34.84 2.75
4794 5009 1.264020 CGAGAGAGGAGCAGAAGATCG 59.736 57.143 0.00 0.00 0.00 3.69
4795 5010 2.571212 GAGAGAGGAGCAGAAGATCGA 58.429 52.381 0.00 0.00 0.00 3.59
4796 5011 2.290641 GAGAGAGGAGCAGAAGATCGAC 59.709 54.545 0.00 0.00 0.00 4.20
4797 5012 1.336755 GAGAGGAGCAGAAGATCGACC 59.663 57.143 0.00 0.00 0.00 4.79
4798 5013 1.107114 GAGGAGCAGAAGATCGACCA 58.893 55.000 0.00 0.00 0.00 4.02
4799 5014 1.066908 GAGGAGCAGAAGATCGACCAG 59.933 57.143 0.00 0.00 0.00 4.00
4800 5015 0.820871 GGAGCAGAAGATCGACCAGT 59.179 55.000 0.00 0.00 0.00 4.00
4801 5016 1.470632 GGAGCAGAAGATCGACCAGTG 60.471 57.143 0.00 0.00 0.00 3.66
4802 5017 0.534412 AGCAGAAGATCGACCAGTGG 59.466 55.000 7.91 7.91 0.00 4.00
4803 5018 0.247736 GCAGAAGATCGACCAGTGGT 59.752 55.000 16.70 16.70 39.44 4.16
4813 5028 2.736144 GACCAGTGGTCGTTACATGA 57.264 50.000 26.12 0.00 43.14 3.07
4814 5029 2.607187 GACCAGTGGTCGTTACATGAG 58.393 52.381 26.12 0.00 43.14 2.90
4815 5030 2.230508 GACCAGTGGTCGTTACATGAGA 59.769 50.000 26.12 0.00 43.14 3.27
4816 5031 2.832129 ACCAGTGGTCGTTACATGAGAT 59.168 45.455 9.70 0.00 0.00 2.75
4817 5032 4.021229 ACCAGTGGTCGTTACATGAGATA 58.979 43.478 9.70 0.00 0.00 1.98
4818 5033 4.649674 ACCAGTGGTCGTTACATGAGATAT 59.350 41.667 9.70 0.00 0.00 1.63
4819 5034 5.831525 ACCAGTGGTCGTTACATGAGATATA 59.168 40.000 9.70 0.00 0.00 0.86
4820 5035 6.150318 CCAGTGGTCGTTACATGAGATATAC 58.850 44.000 0.00 0.00 0.00 1.47
4821 5036 5.851703 CAGTGGTCGTTACATGAGATATACG 59.148 44.000 0.00 0.00 0.00 3.06
4822 5037 5.048921 AGTGGTCGTTACATGAGATATACGG 60.049 44.000 0.00 0.00 0.00 4.02
4823 5038 4.216902 TGGTCGTTACATGAGATATACGGG 59.783 45.833 0.00 0.00 0.00 5.28
4824 5039 4.456911 GGTCGTTACATGAGATATACGGGA 59.543 45.833 0.00 0.00 0.00 5.14
4825 5040 5.125097 GGTCGTTACATGAGATATACGGGAT 59.875 44.000 0.00 0.00 0.00 3.85
4826 5041 6.317140 GGTCGTTACATGAGATATACGGGATA 59.683 42.308 0.00 0.00 0.00 2.59
4827 5042 7.408123 GTCGTTACATGAGATATACGGGATAG 58.592 42.308 0.00 0.00 0.00 2.08
4828 5043 7.279536 GTCGTTACATGAGATATACGGGATAGA 59.720 40.741 0.00 0.00 0.00 1.98
4829 5044 7.494952 TCGTTACATGAGATATACGGGATAGAG 59.505 40.741 0.00 0.00 0.00 2.43
4830 5045 7.494952 CGTTACATGAGATATACGGGATAGAGA 59.505 40.741 0.00 0.00 0.00 3.10
4831 5046 8.832521 GTTACATGAGATATACGGGATAGAGAG 58.167 40.741 0.00 0.00 0.00 3.20
4832 5047 7.201702 ACATGAGATATACGGGATAGAGAGA 57.798 40.000 0.00 0.00 0.00 3.10
4833 5048 7.634718 ACATGAGATATACGGGATAGAGAGAA 58.365 38.462 0.00 0.00 0.00 2.87
4834 5049 7.773224 ACATGAGATATACGGGATAGAGAGAAG 59.227 40.741 0.00 0.00 0.00 2.85
4835 5050 7.497773 TGAGATATACGGGATAGAGAGAAGA 57.502 40.000 0.00 0.00 0.00 2.87
4836 5051 7.919151 TGAGATATACGGGATAGAGAGAAGAA 58.081 38.462 0.00 0.00 0.00 2.52
4837 5052 8.044309 TGAGATATACGGGATAGAGAGAAGAAG 58.956 40.741 0.00 0.00 0.00 2.85
4838 5053 8.153221 AGATATACGGGATAGAGAGAAGAAGA 57.847 38.462 0.00 0.00 0.00 2.87
4839 5054 8.265055 AGATATACGGGATAGAGAGAAGAAGAG 58.735 40.741 0.00 0.00 0.00 2.85
4840 5055 4.781775 ACGGGATAGAGAGAAGAAGAGA 57.218 45.455 0.00 0.00 0.00 3.10
4841 5056 5.319043 ACGGGATAGAGAGAAGAAGAGAT 57.681 43.478 0.00 0.00 0.00 2.75
4842 5057 6.442541 ACGGGATAGAGAGAAGAAGAGATA 57.557 41.667 0.00 0.00 0.00 1.98
4843 5058 6.472887 ACGGGATAGAGAGAAGAAGAGATAG 58.527 44.000 0.00 0.00 0.00 2.08
4844 5059 6.271391 ACGGGATAGAGAGAAGAAGAGATAGA 59.729 42.308 0.00 0.00 0.00 1.98
4845 5060 7.037586 ACGGGATAGAGAGAAGAAGAGATAGAT 60.038 40.741 0.00 0.00 0.00 1.98
4846 5061 8.482943 CGGGATAGAGAGAAGAAGAGATAGATA 58.517 40.741 0.00 0.00 0.00 1.98
4847 5062 9.614792 GGGATAGAGAGAAGAAGAGATAGATAC 57.385 40.741 0.00 0.00 0.00 2.24
4852 5067 9.920946 AGAGAGAAGAAGAGATAGATACAAGTT 57.079 33.333 0.00 0.00 0.00 2.66
4871 5086 8.392372 ACAAGTTTAAACACCTCTTCTATTCC 57.608 34.615 20.06 0.00 0.00 3.01
4872 5087 8.218488 ACAAGTTTAAACACCTCTTCTATTCCT 58.782 33.333 20.06 0.00 0.00 3.36
4873 5088 9.720769 CAAGTTTAAACACCTCTTCTATTCCTA 57.279 33.333 20.06 0.00 0.00 2.94
5321 5541 5.048083 TCAACATAGTGGCCATTCAAGAAAC 60.048 40.000 9.72 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.242804 CGACAGATTCCGGTCTTACTCTC 60.243 52.174 0.00 0.00 35.72 3.20
17 18 1.468914 CTCGATCTGAACACCGACAGA 59.531 52.381 0.00 0.00 45.19 3.41
19 20 1.530323 TCTCGATCTGAACACCGACA 58.470 50.000 0.00 0.00 0.00 4.35
28 29 2.786495 GCCGGCCTTCTCGATCTGA 61.786 63.158 18.11 0.00 0.00 3.27
38 39 0.975887 ATTTGTTTCATGCCGGCCTT 59.024 45.000 26.77 8.91 0.00 4.35
55 56 4.821805 TCTTCGAGCTCCAAAACTTTGATT 59.178 37.500 8.47 0.00 40.55 2.57
59 60 3.945285 TGTTCTTCGAGCTCCAAAACTTT 59.055 39.130 8.47 0.00 0.00 2.66
66 67 0.392706 TTGCTGTTCTTCGAGCTCCA 59.607 50.000 8.47 0.00 36.11 3.86
75 76 0.756442 TGCTTGGCCTTGCTGTTCTT 60.756 50.000 18.48 0.00 0.00 2.52
96 97 2.765807 ATCCAGAGGAGCCCCGTG 60.766 66.667 0.00 0.00 34.05 4.94
97 98 2.444895 GATCCAGAGGAGCCCCGT 60.445 66.667 0.00 0.00 34.05 5.28
102 103 0.686224 CCATCAGGATCCAGAGGAGC 59.314 60.000 19.25 0.00 37.39 4.70
116 117 2.040988 TCCAGATCCGGCCCATCA 60.041 61.111 11.16 0.00 0.00 3.07
119 120 3.083349 CTGTCCAGATCCGGCCCA 61.083 66.667 0.00 0.00 0.00 5.36
120 121 3.083997 ACTGTCCAGATCCGGCCC 61.084 66.667 0.00 0.00 0.00 5.80
143 144 1.457009 TAGTTTGGCAACGGTTGGGC 61.457 55.000 21.37 14.47 38.03 5.36
176 177 4.459089 GGGAGGGTCAGTCGCAGC 62.459 72.222 0.00 0.00 0.00 5.25
184 185 2.606519 CTTGGTCGGGGAGGGTCA 60.607 66.667 0.00 0.00 0.00 4.02
186 187 2.606826 GTCTTGGTCGGGGAGGGT 60.607 66.667 0.00 0.00 0.00 4.34
187 188 3.771160 CGTCTTGGTCGGGGAGGG 61.771 72.222 0.00 0.00 0.00 4.30
193 194 1.007336 CGGTTCTTCGTCTTGGTCGG 61.007 60.000 0.00 0.00 0.00 4.79
197 198 2.059541 GTCTTCGGTTCTTCGTCTTGG 58.940 52.381 0.00 0.00 0.00 3.61
200 201 0.240411 CGGTCTTCGGTTCTTCGTCT 59.760 55.000 0.00 0.00 34.75 4.18
243 244 4.029809 GGGCTAGGTTGCGGTGGT 62.030 66.667 0.00 0.00 0.00 4.16
270 271 4.562425 GGCGATTCCATGCGGGGA 62.562 66.667 0.00 0.00 37.22 4.81
304 305 0.318762 GGCTCTCCTCTTCGTGTGTT 59.681 55.000 0.00 0.00 0.00 3.32
335 336 3.751246 CATGGCTGGTGTTGGCGG 61.751 66.667 0.00 0.00 0.00 6.13
338 339 0.320073 CAAAGCATGGCTGGTGTTGG 60.320 55.000 0.00 0.00 39.62 3.77
375 376 3.746949 CTCCATCCCCTCGCTGTGC 62.747 68.421 0.00 0.00 0.00 4.57
377 378 2.765807 CCTCCATCCCCTCGCTGT 60.766 66.667 0.00 0.00 0.00 4.40
378 379 4.247380 GCCTCCATCCCCTCGCTG 62.247 72.222 0.00 0.00 0.00 5.18
400 402 1.219646 CTAGTCGCCGGAGTAGAGTC 58.780 60.000 5.05 0.00 45.32 3.36
406 408 1.190178 AAAACCCTAGTCGCCGGAGT 61.190 55.000 5.05 0.00 0.00 3.85
425 427 2.895865 CGCGAGCGACCTAGGAGA 60.896 66.667 17.98 0.00 42.83 3.71
426 428 3.955101 CCGCGAGCGACCTAGGAG 61.955 72.222 17.98 10.26 42.83 3.69
464 466 2.969300 TTCGGGGTTTCGCTTGGCTT 62.969 55.000 0.00 0.00 0.00 4.35
468 470 1.734163 ATAGTTCGGGGTTTCGCTTG 58.266 50.000 0.00 0.00 0.00 4.01
547 550 4.042398 CGAACACACTCGGACATATAAGG 58.958 47.826 0.00 0.00 35.14 2.69
562 565 2.033236 GCTCGTTTGATGTTCGAACACA 60.033 45.455 31.87 25.82 40.05 3.72
570 573 1.148310 CTGGACGCTCGTTTGATGTT 58.852 50.000 0.00 0.00 0.00 2.71
581 584 0.034380 TAGTGAGCCTACTGGACGCT 60.034 55.000 0.99 0.00 36.54 5.07
582 585 0.815734 TTAGTGAGCCTACTGGACGC 59.184 55.000 0.99 0.00 34.57 5.19
596 599 8.748582 GGACTTTTAAACGGTTGAATTTTAGTG 58.251 33.333 0.00 0.00 0.00 2.74
597 600 7.644945 CGGACTTTTAAACGGTTGAATTTTAGT 59.355 33.333 0.00 0.00 0.00 2.24
613 616 0.038599 GGGGAAGCCCGGACTTTTAA 59.961 55.000 3.89 0.00 46.66 1.52
616 619 2.014033 TTTGGGGAAGCCCGGACTTT 62.014 55.000 3.89 0.00 46.66 2.66
636 640 6.439636 TTTCTTCCCCATATATGGTCTGAG 57.560 41.667 26.59 18.48 46.65 3.35
651 655 0.526211 GGACAACCGCATTTCTTCCC 59.474 55.000 0.00 0.00 0.00 3.97
734 740 9.480538 GCACGTTTATTTTCGTCAGATTTATTA 57.519 29.630 0.00 0.00 38.23 0.98
743 749 5.849357 AGTATGCACGTTTATTTTCGTCA 57.151 34.783 0.00 0.00 38.23 4.35
795 802 1.447314 CGAAAGGTGGTAGGTCGGC 60.447 63.158 0.00 0.00 0.00 5.54
796 803 0.108945 GACGAAAGGTGGTAGGTCGG 60.109 60.000 0.00 0.00 36.06 4.79
872 881 6.109359 GCAGACAGAAGACAAGTGGTATATT 58.891 40.000 0.00 0.00 0.00 1.28
885 895 2.085320 GAGTACGAGGCAGACAGAAGA 58.915 52.381 0.00 0.00 0.00 2.87
1047 1057 2.731571 GGCGGATCTGTACCTGGCA 61.732 63.158 2.89 0.00 0.00 4.92
1486 1546 6.036470 GGAGTAAATTAACATGGCAAGAAGC 58.964 40.000 0.00 0.00 44.65 3.86
1532 1600 4.458295 AGGTCAGAGCAAAATGACATTCAG 59.542 41.667 0.05 0.00 46.14 3.02
1607 1687 4.130857 TGCATCGTTGACTTTTGGTAAGA 58.869 39.130 0.00 0.00 0.00 2.10
1926 2041 4.340950 GTCAAGGGTGTTGGAATTTTCTGA 59.659 41.667 0.00 0.00 0.00 3.27
1966 2082 4.038271 TGCAATCAATCTTTCTGGTCCT 57.962 40.909 0.00 0.00 0.00 3.85
2015 2131 1.174078 TCAGTGGTGCTGCAATGGTG 61.174 55.000 2.77 0.15 44.66 4.17
2049 2165 9.662947 CCATATATCACATCATCATACACTTGT 57.337 33.333 0.00 0.00 0.00 3.16
2074 2190 5.309323 TGTTACAAATGCTGCATTAGTCC 57.691 39.130 26.48 14.42 32.43 3.85
2075 2191 5.572896 GGTTGTTACAAATGCTGCATTAGTC 59.427 40.000 26.48 15.56 32.43 2.59
2076 2192 5.010516 TGGTTGTTACAAATGCTGCATTAGT 59.989 36.000 26.48 10.81 32.43 2.24
2077 2193 5.468592 TGGTTGTTACAAATGCTGCATTAG 58.531 37.500 26.48 9.44 32.43 1.73
2078 2194 5.459536 TGGTTGTTACAAATGCTGCATTA 57.540 34.783 26.48 10.08 32.43 1.90
2079 2195 4.333913 TGGTTGTTACAAATGCTGCATT 57.666 36.364 21.48 21.48 35.39 3.56
2080 2196 4.540359 ATGGTTGTTACAAATGCTGCAT 57.460 36.364 9.81 9.81 0.00 3.96
2081 2197 4.333913 AATGGTTGTTACAAATGCTGCA 57.666 36.364 4.13 4.13 0.00 4.41
2082 2198 6.589523 TGATTAATGGTTGTTACAAATGCTGC 59.410 34.615 0.00 0.00 0.00 5.25
2083 2199 8.597227 CATGATTAATGGTTGTTACAAATGCTG 58.403 33.333 0.00 0.00 32.10 4.41
2105 2258 6.812879 TTGTTCTCGTCTAGTTACTCATGA 57.187 37.500 0.00 0.00 0.00 3.07
2199 2361 2.481289 TCACCAACCATGCACGATAA 57.519 45.000 0.00 0.00 0.00 1.75
2248 2410 1.956477 GACTGCAACAGTGTTGGGAAT 59.044 47.619 31.64 8.99 45.44 3.01
2413 2581 2.094597 ACGTACGGCAAGCAACATAGTA 60.095 45.455 21.06 0.00 0.00 1.82
2428 2596 0.028242 TGCCAAAAAGCACACGTACG 59.972 50.000 15.01 15.01 38.00 3.67
2501 2669 5.566469 AGACATATTTGGGAACGGAGAAAA 58.434 37.500 0.00 0.00 0.00 2.29
2502 2670 5.174037 AGACATATTTGGGAACGGAGAAA 57.826 39.130 0.00 0.00 0.00 2.52
2503 2671 4.837093 AGACATATTTGGGAACGGAGAA 57.163 40.909 0.00 0.00 0.00 2.87
2504 2672 4.837093 AAGACATATTTGGGAACGGAGA 57.163 40.909 0.00 0.00 0.00 3.71
2505 2673 5.897377 AAAAGACATATTTGGGAACGGAG 57.103 39.130 0.00 0.00 0.00 4.63
2506 2674 7.169591 TCTAAAAAGACATATTTGGGAACGGA 58.830 34.615 0.00 0.00 0.00 4.69
2507 2675 7.335924 TCTCTAAAAAGACATATTTGGGAACGG 59.664 37.037 0.00 0.00 0.00 4.44
2508 2676 8.263940 TCTCTAAAAAGACATATTTGGGAACG 57.736 34.615 0.00 0.00 0.00 3.95
2578 2746 6.000891 TGAGCAAAATGAGTGAATGTACAC 57.999 37.500 0.00 0.00 40.60 2.90
2579 2747 5.764686 ACTGAGCAAAATGAGTGAATGTACA 59.235 36.000 0.00 0.00 0.00 2.90
2580 2748 6.246420 ACTGAGCAAAATGAGTGAATGTAC 57.754 37.500 0.00 0.00 0.00 2.90
2581 2749 7.607607 ACATACTGAGCAAAATGAGTGAATGTA 59.392 33.333 0.00 0.00 0.00 2.29
2582 2750 6.432162 ACATACTGAGCAAAATGAGTGAATGT 59.568 34.615 0.00 0.00 0.00 2.71
2583 2751 6.849502 ACATACTGAGCAAAATGAGTGAATG 58.150 36.000 0.00 0.00 0.00 2.67
2584 2752 7.826252 ACTACATACTGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2585 2753 7.161404 ACTACATACTGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2586 2754 6.701340 ACTACATACTGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2587 2755 6.815641 AGACTACATACTGAGCAAAATGAGTG 59.184 38.462 0.00 0.00 0.00 3.51
2588 2756 6.940739 AGACTACATACTGAGCAAAATGAGT 58.059 36.000 0.00 0.00 0.00 3.41
2589 2757 7.038048 TGAGACTACATACTGAGCAAAATGAG 58.962 38.462 0.00 0.00 0.00 2.90
2590 2758 6.935167 TGAGACTACATACTGAGCAAAATGA 58.065 36.000 0.00 0.00 0.00 2.57
2591 2759 7.601073 TTGAGACTACATACTGAGCAAAATG 57.399 36.000 0.00 0.00 0.00 2.32
2592 2760 8.671921 CAATTGAGACTACATACTGAGCAAAAT 58.328 33.333 0.00 0.00 0.00 1.82
2593 2761 7.119699 CCAATTGAGACTACATACTGAGCAAAA 59.880 37.037 7.12 0.00 0.00 2.44
2594 2762 6.595326 CCAATTGAGACTACATACTGAGCAAA 59.405 38.462 7.12 0.00 0.00 3.68
2595 2763 6.070824 TCCAATTGAGACTACATACTGAGCAA 60.071 38.462 7.12 0.00 0.00 3.91
2596 2764 5.422012 TCCAATTGAGACTACATACTGAGCA 59.578 40.000 7.12 0.00 0.00 4.26
2597 2765 5.907207 TCCAATTGAGACTACATACTGAGC 58.093 41.667 7.12 0.00 0.00 4.26
2598 2766 8.420222 AGATTCCAATTGAGACTACATACTGAG 58.580 37.037 7.12 0.00 0.00 3.35
2599 2767 8.311395 AGATTCCAATTGAGACTACATACTGA 57.689 34.615 7.12 0.00 0.00 3.41
2600 2768 8.420222 AGAGATTCCAATTGAGACTACATACTG 58.580 37.037 7.12 0.00 0.00 2.74
2601 2769 8.546083 AGAGATTCCAATTGAGACTACATACT 57.454 34.615 7.12 0.00 0.00 2.12
2608 2776 9.225436 GTCTTTTTAGAGATTCCAATTGAGACT 57.775 33.333 7.12 0.69 0.00 3.24
2609 2777 9.225436 AGTCTTTTTAGAGATTCCAATTGAGAC 57.775 33.333 7.12 6.96 0.00 3.36
2610 2778 9.799106 AAGTCTTTTTAGAGATTCCAATTGAGA 57.201 29.630 7.12 0.00 0.00 3.27
2627 2795 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2628 2796 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2629 2797 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2630 2798 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2631 2799 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2632 2800 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2633 2801 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2634 2802 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2635 2803 6.210185 GCTACTCCCTCCGTTCCTAAATATAA 59.790 42.308 0.00 0.00 0.00 0.98
2636 2804 5.713861 GCTACTCCCTCCGTTCCTAAATATA 59.286 44.000 0.00 0.00 0.00 0.86
2637 2805 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
2638 2806 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
2639 2807 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
2640 2808 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
2641 2809 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
2642 2810 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
2643 2811 0.396001 GAGCTACTCCCTCCGTTCCT 60.396 60.000 0.00 0.00 0.00 3.36
2644 2812 0.683504 TGAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
2645 2813 1.404843 ATGAGCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
2646 2814 2.750141 TATGAGCTACTCCCTCCGTT 57.250 50.000 0.00 0.00 0.00 4.44
2647 2815 2.108425 TGATATGAGCTACTCCCTCCGT 59.892 50.000 0.00 0.00 0.00 4.69
2648 2816 2.490115 GTGATATGAGCTACTCCCTCCG 59.510 54.545 0.00 0.00 0.00 4.63
2649 2817 2.829120 GGTGATATGAGCTACTCCCTCC 59.171 54.545 0.00 0.00 0.00 4.30
2650 2818 2.829120 GGGTGATATGAGCTACTCCCTC 59.171 54.545 0.00 0.00 34.47 4.30
2651 2819 2.180086 TGGGTGATATGAGCTACTCCCT 59.820 50.000 0.00 0.00 37.10 4.20
2652 2820 2.609747 TGGGTGATATGAGCTACTCCC 58.390 52.381 0.00 0.00 36.82 4.30
2653 2821 4.899352 AATGGGTGATATGAGCTACTCC 57.101 45.455 0.00 0.00 0.00 3.85
2654 2822 8.854614 AATTTAATGGGTGATATGAGCTACTC 57.145 34.615 0.00 0.00 0.00 2.59
2722 2890 8.908903 TCTGTTCCTCTTTAGTAATCTGAGATC 58.091 37.037 0.00 0.00 0.00 2.75
2773 2941 2.148446 TTGGCTTATGCTGCTCCAAT 57.852 45.000 0.00 0.00 39.59 3.16
2836 3015 8.989131 ACTAATTCTTCTAGCACCCTATGTTTA 58.011 33.333 0.00 0.00 0.00 2.01
2844 3023 6.258947 CAGCTAAACTAATTCTTCTAGCACCC 59.741 42.308 10.43 0.00 35.34 4.61
2845 3024 6.819146 ACAGCTAAACTAATTCTTCTAGCACC 59.181 38.462 10.43 0.00 35.34 5.01
2896 3077 7.490657 TGGCTGATATACCCGAAAGTATAAT 57.509 36.000 4.69 0.00 38.39 1.28
2997 3184 0.743688 AGTTGCGTTTGGTTGCATCA 59.256 45.000 0.00 0.00 41.42 3.07
3044 3231 5.759506 TGAAATTAGGACAGTCGCAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
3045 3232 5.957842 ATGAAATTAGGACAGTCGCAAAA 57.042 34.783 0.00 0.00 0.00 2.44
3046 3233 5.957842 AATGAAATTAGGACAGTCGCAAA 57.042 34.783 0.00 0.00 32.46 3.68
3047 3234 5.957842 AAATGAAATTAGGACAGTCGCAA 57.042 34.783 0.00 0.00 33.67 4.85
3048 3235 5.957842 AAAATGAAATTAGGACAGTCGCA 57.042 34.783 0.00 0.00 33.67 5.10
3049 3236 6.378582 TCAAAAATGAAATTAGGACAGTCGC 58.621 36.000 0.00 0.00 33.67 5.19
3050 3237 7.860373 TGTTCAAAAATGAAATTAGGACAGTCG 59.140 33.333 0.00 0.00 33.67 4.18
3051 3238 9.696917 ATGTTCAAAAATGAAATTAGGACAGTC 57.303 29.630 0.00 0.00 33.67 3.51
3052 3239 9.480053 CATGTTCAAAAATGAAATTAGGACAGT 57.520 29.630 0.00 0.00 33.67 3.55
3053 3240 9.695526 TCATGTTCAAAAATGAAATTAGGACAG 57.304 29.630 0.00 0.00 33.67 3.51
3488 3677 8.598075 GCATGGTATTTTGAATTTCAAGATGTC 58.402 33.333 19.91 14.02 37.70 3.06
4198 4403 2.546368 CCGTTCGTCATTCCTGTTCAAA 59.454 45.455 0.00 0.00 0.00 2.69
4588 4803 1.131303 ACATTGTGGGACGGAGGGAA 61.131 55.000 0.00 0.00 0.00 3.97
4599 4814 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
4644 4859 3.056322 ACCGCCGTCCCATAATATAAGAC 60.056 47.826 0.00 0.00 0.00 3.01
4657 4872 0.244721 ACTACTTTACACCGCCGTCC 59.755 55.000 0.00 0.00 0.00 4.79
4661 4876 1.808343 CCCAAACTACTTTACACCGCC 59.192 52.381 0.00 0.00 0.00 6.13
4662 4877 2.769893 TCCCAAACTACTTTACACCGC 58.230 47.619 0.00 0.00 0.00 5.68
4663 4878 3.187842 GCTTCCCAAACTACTTTACACCG 59.812 47.826 0.00 0.00 0.00 4.94
4664 4879 3.187842 CGCTTCCCAAACTACTTTACACC 59.812 47.826 0.00 0.00 0.00 4.16
4665 4880 3.811497 ACGCTTCCCAAACTACTTTACAC 59.189 43.478 0.00 0.00 0.00 2.90
4666 4881 4.075963 ACGCTTCCCAAACTACTTTACA 57.924 40.909 0.00 0.00 0.00 2.41
4667 4882 5.473039 TCTACGCTTCCCAAACTACTTTAC 58.527 41.667 0.00 0.00 0.00 2.01
4668 4883 5.726980 TCTACGCTTCCCAAACTACTTTA 57.273 39.130 0.00 0.00 0.00 1.85
4669 4884 4.612264 TCTACGCTTCCCAAACTACTTT 57.388 40.909 0.00 0.00 0.00 2.66
4670 4885 4.313282 GTTCTACGCTTCCCAAACTACTT 58.687 43.478 0.00 0.00 0.00 2.24
4671 4886 3.306571 GGTTCTACGCTTCCCAAACTACT 60.307 47.826 0.00 0.00 0.00 2.57
4672 4887 2.998670 GGTTCTACGCTTCCCAAACTAC 59.001 50.000 0.00 0.00 0.00 2.73
4673 4888 2.027837 GGGTTCTACGCTTCCCAAACTA 60.028 50.000 0.00 0.00 39.68 2.24
4674 4889 1.271217 GGGTTCTACGCTTCCCAAACT 60.271 52.381 0.00 0.00 39.68 2.66
4675 4890 1.162698 GGGTTCTACGCTTCCCAAAC 58.837 55.000 0.00 0.00 39.68 2.93
4676 4891 1.061546 AGGGTTCTACGCTTCCCAAA 58.938 50.000 0.00 0.00 38.28 3.28
4677 4892 1.061546 AAGGGTTCTACGCTTCCCAA 58.938 50.000 3.61 0.00 46.59 4.12
4678 4893 2.768046 AAGGGTTCTACGCTTCCCA 58.232 52.632 3.61 0.00 46.59 4.37
4683 4898 1.067776 CGAGACAAAGGGTTCTACGCT 60.068 52.381 0.00 0.00 43.70 5.07
4684 4899 1.347320 CGAGACAAAGGGTTCTACGC 58.653 55.000 0.00 0.00 0.00 4.42
4685 4900 1.403780 CCCGAGACAAAGGGTTCTACG 60.404 57.143 0.00 0.00 42.67 3.51
4686 4901 2.381725 CCCGAGACAAAGGGTTCTAC 57.618 55.000 0.00 0.00 42.67 2.59
4698 4913 2.138656 ATATACACGCGGCCCGAGAC 62.139 60.000 15.49 0.00 41.02 3.36
4699 4914 0.606130 TATATACACGCGGCCCGAGA 60.606 55.000 15.49 0.00 41.02 4.04
4700 4915 0.454600 ATATATACACGCGGCCCGAG 59.545 55.000 18.74 6.22 41.02 4.63
4701 4916 0.889994 AATATATACACGCGGCCCGA 59.110 50.000 18.74 0.00 41.02 5.14
4702 4917 0.996462 CAATATATACACGCGGCCCG 59.004 55.000 12.47 11.48 44.21 6.13
4703 4918 2.268298 CTCAATATATACACGCGGCCC 58.732 52.381 12.47 0.00 0.00 5.80
4704 4919 2.268298 CCTCAATATATACACGCGGCC 58.732 52.381 12.47 0.00 0.00 6.13
4705 4920 1.659098 GCCTCAATATATACACGCGGC 59.341 52.381 12.47 0.00 0.00 6.53
4706 4921 2.954316 TGCCTCAATATATACACGCGG 58.046 47.619 12.47 1.27 0.00 6.46
4707 4922 4.666655 GCTTTGCCTCAATATATACACGCG 60.667 45.833 3.53 3.53 0.00 6.01
4708 4923 4.378459 GGCTTTGCCTCAATATATACACGC 60.378 45.833 0.73 0.00 46.69 5.34
4709 4924 5.283060 GGCTTTGCCTCAATATATACACG 57.717 43.478 0.73 0.00 46.69 4.49
4724 4939 2.358939 CTTGTCATCCAAGGCTTTGC 57.641 50.000 2.41 0.00 45.70 3.68
4732 4947 5.063204 CCTTCACTGTAACTTGTCATCCAA 58.937 41.667 0.00 0.00 0.00 3.53
4733 4948 4.102524 ACCTTCACTGTAACTTGTCATCCA 59.897 41.667 0.00 0.00 0.00 3.41
4734 4949 4.642429 ACCTTCACTGTAACTTGTCATCC 58.358 43.478 0.00 0.00 0.00 3.51
4735 4950 5.758296 TCAACCTTCACTGTAACTTGTCATC 59.242 40.000 0.00 0.00 0.00 2.92
4736 4951 5.680619 TCAACCTTCACTGTAACTTGTCAT 58.319 37.500 0.00 0.00 0.00 3.06
4737 4952 5.092554 TCAACCTTCACTGTAACTTGTCA 57.907 39.130 0.00 0.00 0.00 3.58
4738 4953 5.107453 CGATCAACCTTCACTGTAACTTGTC 60.107 44.000 0.00 0.00 0.00 3.18
4739 4954 4.750098 CGATCAACCTTCACTGTAACTTGT 59.250 41.667 0.00 0.00 0.00 3.16
4740 4955 4.988540 TCGATCAACCTTCACTGTAACTTG 59.011 41.667 0.00 0.00 0.00 3.16
4741 4956 5.010719 TCTCGATCAACCTTCACTGTAACTT 59.989 40.000 0.00 0.00 0.00 2.66
4742 4957 4.523173 TCTCGATCAACCTTCACTGTAACT 59.477 41.667 0.00 0.00 0.00 2.24
4743 4958 4.806330 TCTCGATCAACCTTCACTGTAAC 58.194 43.478 0.00 0.00 0.00 2.50
4744 4959 4.765339 TCTCTCGATCAACCTTCACTGTAA 59.235 41.667 0.00 0.00 0.00 2.41
4745 4960 4.332828 TCTCTCGATCAACCTTCACTGTA 58.667 43.478 0.00 0.00 0.00 2.74
4746 4961 3.157881 TCTCTCGATCAACCTTCACTGT 58.842 45.455 0.00 0.00 0.00 3.55
4747 4962 3.428725 CCTCTCTCGATCAACCTTCACTG 60.429 52.174 0.00 0.00 0.00 3.66
4748 4963 2.757868 CCTCTCTCGATCAACCTTCACT 59.242 50.000 0.00 0.00 0.00 3.41
4749 4964 2.755655 TCCTCTCTCGATCAACCTTCAC 59.244 50.000 0.00 0.00 0.00 3.18
4750 4965 3.020274 CTCCTCTCTCGATCAACCTTCA 58.980 50.000 0.00 0.00 0.00 3.02
4751 4966 3.283751 TCTCCTCTCTCGATCAACCTTC 58.716 50.000 0.00 0.00 0.00 3.46
4752 4967 3.374042 TCTCCTCTCTCGATCAACCTT 57.626 47.619 0.00 0.00 0.00 3.50
4753 4968 3.486383 GATCTCCTCTCTCGATCAACCT 58.514 50.000 0.00 0.00 34.98 3.50
4754 4969 2.225491 CGATCTCCTCTCTCGATCAACC 59.775 54.545 0.00 0.00 34.63 3.77
4755 4970 3.135225 TCGATCTCCTCTCTCGATCAAC 58.865 50.000 0.00 0.00 36.57 3.18
4756 4971 3.070302 TCTCGATCTCCTCTCTCGATCAA 59.930 47.826 0.00 0.00 40.29 2.57
4757 4972 2.630580 TCTCGATCTCCTCTCTCGATCA 59.369 50.000 0.00 0.00 40.29 2.92
4758 4973 3.056821 TCTCTCGATCTCCTCTCTCGATC 60.057 52.174 0.00 0.00 40.29 3.69
4759 4974 2.897326 TCTCTCGATCTCCTCTCTCGAT 59.103 50.000 0.00 0.00 40.29 3.59
4760 4975 2.296190 CTCTCTCGATCTCCTCTCTCGA 59.704 54.545 0.00 0.00 38.95 4.04
4761 4976 2.610479 CCTCTCTCGATCTCCTCTCTCG 60.610 59.091 0.00 0.00 0.00 4.04
4762 4977 2.632996 TCCTCTCTCGATCTCCTCTCTC 59.367 54.545 0.00 0.00 0.00 3.20
4763 4978 2.634940 CTCCTCTCTCGATCTCCTCTCT 59.365 54.545 0.00 0.00 0.00 3.10
4764 4979 2.872038 GCTCCTCTCTCGATCTCCTCTC 60.872 59.091 0.00 0.00 0.00 3.20
4765 4980 1.072331 GCTCCTCTCTCGATCTCCTCT 59.928 57.143 0.00 0.00 0.00 3.69
4766 4981 1.202758 TGCTCCTCTCTCGATCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
4767 4982 0.843309 TGCTCCTCTCTCGATCTCCT 59.157 55.000 0.00 0.00 0.00 3.69
4768 4983 1.202758 TCTGCTCCTCTCTCGATCTCC 60.203 57.143 0.00 0.00 0.00 3.71
4769 4984 2.254546 TCTGCTCCTCTCTCGATCTC 57.745 55.000 0.00 0.00 0.00 2.75
4770 4985 2.172505 TCTTCTGCTCCTCTCTCGATCT 59.827 50.000 0.00 0.00 0.00 2.75
4771 4986 2.571212 TCTTCTGCTCCTCTCTCGATC 58.429 52.381 0.00 0.00 0.00 3.69
4772 4987 2.727123 TCTTCTGCTCCTCTCTCGAT 57.273 50.000 0.00 0.00 0.00 3.59
4773 4988 2.571212 GATCTTCTGCTCCTCTCTCGA 58.429 52.381 0.00 0.00 0.00 4.04
4774 4989 1.264020 CGATCTTCTGCTCCTCTCTCG 59.736 57.143 0.00 0.00 0.00 4.04
4775 4990 2.290641 GTCGATCTTCTGCTCCTCTCTC 59.709 54.545 0.00 0.00 0.00 3.20
4776 4991 2.297701 GTCGATCTTCTGCTCCTCTCT 58.702 52.381 0.00 0.00 0.00 3.10
4777 4992 1.336755 GGTCGATCTTCTGCTCCTCTC 59.663 57.143 0.00 0.00 0.00 3.20
4778 4993 1.341482 TGGTCGATCTTCTGCTCCTCT 60.341 52.381 0.00 0.00 0.00 3.69
4779 4994 1.066908 CTGGTCGATCTTCTGCTCCTC 59.933 57.143 0.00 0.00 0.00 3.71
4780 4995 1.110442 CTGGTCGATCTTCTGCTCCT 58.890 55.000 0.00 0.00 0.00 3.69
4781 4996 0.820871 ACTGGTCGATCTTCTGCTCC 59.179 55.000 0.00 0.00 0.00 4.70
4782 4997 1.470632 CCACTGGTCGATCTTCTGCTC 60.471 57.143 0.00 0.00 0.00 4.26
4783 4998 0.534412 CCACTGGTCGATCTTCTGCT 59.466 55.000 0.00 0.00 0.00 4.24
4784 4999 0.247736 ACCACTGGTCGATCTTCTGC 59.752 55.000 0.00 0.00 0.00 4.26
4785 5000 2.285827 GACCACTGGTCGATCTTCTG 57.714 55.000 12.59 0.00 43.14 3.02
4795 5010 2.244695 TCTCATGTAACGACCACTGGT 58.755 47.619 0.00 0.00 39.44 4.00
4796 5011 3.526931 ATCTCATGTAACGACCACTGG 57.473 47.619 0.00 0.00 0.00 4.00
4797 5012 5.851703 CGTATATCTCATGTAACGACCACTG 59.148 44.000 0.00 0.00 0.00 3.66
4798 5013 5.048921 CCGTATATCTCATGTAACGACCACT 60.049 44.000 0.00 0.00 0.00 4.00
4799 5014 5.152097 CCGTATATCTCATGTAACGACCAC 58.848 45.833 0.00 0.00 0.00 4.16
4800 5015 4.216902 CCCGTATATCTCATGTAACGACCA 59.783 45.833 0.00 0.00 0.00 4.02
4801 5016 4.456911 TCCCGTATATCTCATGTAACGACC 59.543 45.833 0.00 0.00 0.00 4.79
4802 5017 5.618056 TCCCGTATATCTCATGTAACGAC 57.382 43.478 0.00 0.00 0.00 4.34
4803 5018 7.333323 TCTATCCCGTATATCTCATGTAACGA 58.667 38.462 0.00 0.00 0.00 3.85
4804 5019 7.494952 TCTCTATCCCGTATATCTCATGTAACG 59.505 40.741 0.00 0.00 0.00 3.18
4805 5020 8.734218 TCTCTATCCCGTATATCTCATGTAAC 57.266 38.462 0.00 0.00 0.00 2.50
4806 5021 8.769359 TCTCTCTATCCCGTATATCTCATGTAA 58.231 37.037 0.00 0.00 0.00 2.41
4807 5022 8.320338 TCTCTCTATCCCGTATATCTCATGTA 57.680 38.462 0.00 0.00 0.00 2.29
4808 5023 7.201702 TCTCTCTATCCCGTATATCTCATGT 57.798 40.000 0.00 0.00 0.00 3.21
4809 5024 7.990314 TCTTCTCTCTATCCCGTATATCTCATG 59.010 40.741 0.00 0.00 0.00 3.07
4810 5025 8.096621 TCTTCTCTCTATCCCGTATATCTCAT 57.903 38.462 0.00 0.00 0.00 2.90
4811 5026 7.497773 TCTTCTCTCTATCCCGTATATCTCA 57.502 40.000 0.00 0.00 0.00 3.27
4812 5027 8.262227 TCTTCTTCTCTCTATCCCGTATATCTC 58.738 40.741 0.00 0.00 0.00 2.75
4813 5028 8.153221 TCTTCTTCTCTCTATCCCGTATATCT 57.847 38.462 0.00 0.00 0.00 1.98
4814 5029 8.262227 TCTCTTCTTCTCTCTATCCCGTATATC 58.738 40.741 0.00 0.00 0.00 1.63
4815 5030 8.153221 TCTCTTCTTCTCTCTATCCCGTATAT 57.847 38.462 0.00 0.00 0.00 0.86
4816 5031 7.556416 TCTCTTCTTCTCTCTATCCCGTATA 57.444 40.000 0.00 0.00 0.00 1.47
4817 5032 6.442541 TCTCTTCTTCTCTCTATCCCGTAT 57.557 41.667 0.00 0.00 0.00 3.06
4818 5033 5.890752 TCTCTTCTTCTCTCTATCCCGTA 57.109 43.478 0.00 0.00 0.00 4.02
4819 5034 4.781775 TCTCTTCTTCTCTCTATCCCGT 57.218 45.455 0.00 0.00 0.00 5.28
4820 5035 6.707290 TCTATCTCTTCTTCTCTCTATCCCG 58.293 44.000 0.00 0.00 0.00 5.14
4821 5036 9.614792 GTATCTATCTCTTCTTCTCTCTATCCC 57.385 40.741 0.00 0.00 0.00 3.85
4826 5041 9.920946 AACTTGTATCTATCTCTTCTTCTCTCT 57.079 33.333 0.00 0.00 0.00 3.10
4845 5060 9.498176 GGAATAGAAGAGGTGTTTAAACTTGTA 57.502 33.333 18.72 7.96 0.00 2.41
4846 5061 8.218488 AGGAATAGAAGAGGTGTTTAAACTTGT 58.782 33.333 18.72 6.11 0.00 3.16
4847 5062 8.622948 AGGAATAGAAGAGGTGTTTAAACTTG 57.377 34.615 18.72 0.00 0.00 3.16
4879 5094 9.551339 TCTTACTACTCCCTCCTGTTAAAATTA 57.449 33.333 0.00 0.00 0.00 1.40
4880 5095 8.445361 TCTTACTACTCCCTCCTGTTAAAATT 57.555 34.615 0.00 0.00 0.00 1.82
4881 5096 8.445361 TTCTTACTACTCCCTCCTGTTAAAAT 57.555 34.615 0.00 0.00 0.00 1.82
4882 5097 7.860649 TTCTTACTACTCCCTCCTGTTAAAA 57.139 36.000 0.00 0.00 0.00 1.52
4883 5098 7.860649 TTTCTTACTACTCCCTCCTGTTAAA 57.139 36.000 0.00 0.00 0.00 1.52
4884 5099 7.038516 CCTTTTCTTACTACTCCCTCCTGTTAA 60.039 40.741 0.00 0.00 0.00 2.01
4885 5100 6.439692 CCTTTTCTTACTACTCCCTCCTGTTA 59.560 42.308 0.00 0.00 0.00 2.41
4886 5101 5.248705 CCTTTTCTTACTACTCCCTCCTGTT 59.751 44.000 0.00 0.00 0.00 3.16
4887 5102 4.778427 CCTTTTCTTACTACTCCCTCCTGT 59.222 45.833 0.00 0.00 0.00 4.00
4888 5103 4.778427 ACCTTTTCTTACTACTCCCTCCTG 59.222 45.833 0.00 0.00 0.00 3.86
4889 5104 5.026093 ACCTTTTCTTACTACTCCCTCCT 57.974 43.478 0.00 0.00 0.00 3.69
5034 5250 2.631160 AACGGAATGAATATGCCCGA 57.369 45.000 0.00 0.00 42.49 5.14
5321 5541 2.023181 CGAAATCCGTGCGCATGG 59.977 61.111 37.72 37.72 38.85 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.